Activity
From 09/10/2018 to 10/09/2018
10/09/2018
- 06:26 PM task #7785: CdmUserHelper caches permission information
- Can you define what functionality is exactly needed from the CdmTransientEntityCacher and why #7709 needs to be fixed...
- 05:58 PM bug #7222: Phycobank UI improve labels
- To "Start a new registration process either for a name or typification."
Suggestion:
* "Start registering scien... - 05:54 PM bug #7222: Phycobank UI improve labels
- This issue is almost complete, please see the two open TODOs in the issue description.
- 05:51 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
- ERS: probably not to be imported at all
- 05:40 PM feature request #7815 (New): TaxonNameEditor: Hint user on missing citation detail for nomenclatural reference
- Reference detail, wenn NULL bei Speicherversuch: warning “Please insert the reference page and of figure of the nomen...
- 05:32 PM Revision d98b71cb (cdm-vaadin): ref #7222 modifying the text on nomRef sub sections
- 05:27 PM Revision b378fe05 (cdm-vaadin): ref #7222 removing the 'Hint:' line in TaxonNameEditor
- 03:40 PM feature request #7799 (In Progress): AM: Parse authorteams
- 03:18 PM Revision 3b975922 (taxeditor): ref #7793: add DB preferences to hide specimen and import issues and smaller changes in db preferences
- 02:58 PM Revision 81641aab (taxeditor): Fix possible IOOB exception
- 02:00 PM bug #7814: Section in Name and section in Basionym, usability
- Es funktioniert nur die erste Version, die für User etwas fehlerhaft wirkt.
Ich kann bei der Basionym-Referenz mit... - 01:23 PM bug #7814: Section in Name and section in Basionym, usability
- 2. Screenshot sollte zeigen:
You, Q. & Kociolek, J.P. - in You, Q., Kociolek, J.P. & Wang, X., New Gomphoneis Cleve ... - 01:22 PM bug #7814 (Closed): Section in Name and section in Basionym, usability
- Bedienungsfehler möglich, wenn neuer Name und Basionym jeweils eine In-Zitierung haben.
Vorgehen: Referenz eingebe... - 12:55 PM bug #7813 (Duplicate): Basionym without journal
- When a new name has a basionym, the basionym reference can be selected or be new.
If the reference is a new article ...
10/08/2018
- 03:00 PM task #7420 (Closed): Import for higher taxon graph for phycobank
- new ticket for the actual import tasks created: #7811
- 11:21 AM task #7420: Import for higher taxon graph for phycobank
- Ok, can you close the ticket and open a ticket for what ever you stil need?
- 11:04 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
- I reviewed the imported taxon graph relations. The resulting graph exactly matches the expectations.
The implementat... - 08:54 AM task #7420: Import for higher taxon graph for phycobank
- all other data import and data cleaning issues are copied to #7808
- 08:31 AM task #7420: Import for higher taxon graph for phycobank
- Andreas Müller wrote:
> You should check by
>
> ~~~ sql
> SELECT titleCache, count(*) as n
> FROM TaxonName tn... - 02:59 PM task #7811 (In Progress): Import higher classifications
- 02:59 PM task #7811 (Feedback): Import higher classifications
- The following classifications need to be imported using the import created for #7420
* Frey W. 2015: Syllabus of t... - 02:36 PM bug #7777 (Resolved): NPE on login attempt after logout
- Applied in changeset commit:cdm-vaadin|3363dabd63329f2f2fd160f5a6c5107ba10a9d2e.
- 02:35 PM Revision 3363dabd (cdm-vaadin): fix #7777 avoiding null access to views of undisposed LoginPresenters
- 01:55 PM Revision e14cd818 (taxeditor): Merge branch 'develop' into detailsViewCache
- # Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/name/NameDetailElement.java - 01:30 PM feature request #7810 (In Progress): DB preference to make Specimen editors visible
- 01:29 PM feature request #7810 (Closed): DB preference to make Specimen editors visible
- if the preference is set to false everything concerning specimen should be disabled:
* imports
* Specimen Type... - 01:08 PM feature request #7809 (In Progress): Improve namerelationship handling in editor
- 01:08 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
- copied from #7793:
Namerelationships should be available for both directions in name editor details view.
We sh... - 12:41 PM Revision c61ea4bc (taxeditor): Remove duplicate methods
- 12:40 PM Revision 0dda9c8f (taxeditor): ref #7502 Save table settings when closing bulk editor
- 12:36 PM Revision 85bb59b4 (taxongraph-view): oops
- 12:34 PM Revision d54ba758 (taxongraph-view): ref #7791 using edit-test as datasource and adding more test data
- 12:29 PM Revision 3005f915 (taxongraph-view): ref #7791 display of the chosen datasource
- 12:16 PM Revision 271be809 (taxeditor): ref #7502 Fix "de" translation
- 12:12 PM Revision ef7ec8ab (taxeditor): ref #7502 Add table settings to search bar
- 12:09 PM Revision 6fd483b7 (taxeditor): ref #7502 Remove debug context menu
- 11:36 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- Andreas Kohlbecker wrote:
> Do you want me to do something about this issue? I think my task was the according imple... - 08:23 AM feature request #3990 (Feedback): [DISCUSS] How to implement citation suggestion to each taxon
- Do you want me to do something about this issue? I think my task was the according implementation in the data-portal.
- 08:16 AM Revision 29b3b816 (cdmlib): commenting createTestDataSet() @Test annotation
- 07:57 AM bug #7807 (New): Multiple mobile Usability issues
- The new google webmasters console reports multiple mobile Usability issues:
* Text too small to read
* Viewport n...
10/05/2018
- 06:38 PM Revision bab39794 (taxongraph-view): adding test data file edges.json
- 06:34 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- implementation complete!
- 06:34 PM Revision 11ab88e8 (cdmlib): ref #7648 automatic management of lower ranked names in the taxon graph
- 05:56 PM Revision 62b55a78 (taxeditor): ref #7502 Show tooltip for lock icon in header
- 05:35 PM Revision 9767c1ad (taxeditor): ref #7502 Show lock icon in header
- 03:59 PM Revision 4c90f595 (cdmlib): Merge branch 'feature/#7648' into develop
- - TaxonGraphDao
- TaxonGraphController
- TaxonGraphService
- TaxonGraphDTO
- TaxonGraphHibernateListener and proc... - 03:58 PM Revision 19628819 (cdmlib): ref #7648 fixing problems in TaxonGraphTest
- 03:34 PM Revision 849697fa (cdm-vaadin): fixing bug related to creation of new names in RegistrationWorkingsets
- 03:23 PM Revision 91e05af0 (cdmlib): ref #7791 TaxonGraphDao supressing Names associated with Registrations where the status is not PUBLISHED
- 02:55 PM Revision 4c5284df (cdmlib): ref #7648 moving taxongraph methods from taxonDao to taxonGraphDao
- 02:48 PM Revision 397b3cd7 (cdm-vaadin): ref #7648 startup option for registrations to create missing taxon graph edges
- 02:46 PM Revision 9bdd2739 (cdmlib): ref #7791 TaxonGraphNodeDTO with rank labels
- 02:40 PM Revision 3406fef9 (taxongraph-view): initial version of the taxonGraph visualization using cytoscape.js with dagre v0.6.4
- 12:32 PM bug #3276 (Closed): NPE for "Move Elements" context menu option
- works fine
- 10:14 AM bug #3276: NPE for "Move Elements" context menu option
- The NPE I could not reproduce. The menu entry for move factual data is displayed only for descritions, now.
Why the... - 09:17 AM bug #3276 (Feedback): NPE for "Move Elements" context menu option
- I could not reproduce this exception how described above but there is another one.
Now there is also the context m... - 12:28 PM feature request #7502 (Resolved): Add further columns to bulk editor
- I implemented all of the mentioned properties as columns.
Please check all types of bulk editors. - 12:27 PM Revision 079534a2 (taxeditor): ref #7502 Show boolean properties in checkboxes
- 12:27 PM Revision 9d42b88f (taxeditor): ref #7502 Add various occurrence columns
- 12:27 PM Revision d9ade402 (taxeditor): ref #7502 Add protected cache boolean property columns
- 12:27 PM Revision 0e7c806f (taxeditor): ref #7502 Add boolean property columns
- 12:27 PM Revision d1ccac39 (taxeditor): ref #7502 Add property columns for agents, media and references
- 12:27 PM Revision 27cee58f (taxeditor): ref #7502 Add Name.Genus and epithets
- 12:27 PM Revision 091afa8b (taxeditor): ref #7659 Normalize column size
- 12:27 PM Revision 68befb95 (taxeditor): ref #7502 Add abbrev (nomencl.) cache for references
- 12:27 PM Revision fe289550 (taxeditor): ref #7502 Add name cache and authorship cache for names
- 12:27 PM Revision de3db973 (taxeditor): ref #7502 code cleaning
- 12:27 PM Revision 11ba4bed (taxeditor): ref #7502 Change column order
- - Move type column back
- 12:27 PM Revision bb67f3ba (taxeditor): ref #7502 Add nomenclatural title to agent bulk editor
- 12:27 PM Revision 521ddbfc (taxeditor): ref #7502 Refactor column generation
- - move constants and column properties to bulk editor input
- 11:38 AM Revision 43c739f3 (taxeditor): smaller changes for factual data menu
- 10:24 AM Revision bd0c87e3 (taxeditor): ref #3276:minor
- 10:11 AM Revision feef82e2 (taxeditor): ref #3276:move fact should be displayed only for facts
- 10:11 AM Revision ae468727 (taxeditor): fix NPE when no ABCD preference exist when opening preference dialog
- 08:47 AM Revision 2984c728 (taxeditor): ref #7806 Make description text scrollabel and multi-line
- 08:43 AM feature request #7806 (Resolved): GfBio Term Search issues
- 08:42 AM Revision e2c16f04 (taxeditor): ref #7806 Handle wildcard search
- 08:42 AM Revision 9f8cd368 (taxeditor): ref #7806 Sort result list
- 08:42 AM Revision efab2544 (taxeditor): ref #7806 small label change
- 08:42 AM Revision 9e521c57 (taxeditor): ref #7806 Implement selection dialog for ontologies
- 08:42 AM Revision 341c6293 (taxeditor): ref #7806 show search result count
- - also remove "Load details" button
- 08:42 AM Revision b5610bde (taxeditor): ref #7806 Move ontology abbreviation to the end of the term label
10/04/2018
- 09:53 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- "Session is closed!"-problem is solved now.
- 05:44 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- There is a problem when running the test in the maven test suite. The `TaxonGraphHibernateListenerTest` fails when it...
- 09:44 PM Revision 81c01935 (cdmlib): ref #7648 more pulling up into AbstractHibernateTaxonGraphProcessor
- 09:21 PM Revision 954ad762 (cdm-vaadin): ref #6621 commenting no longer used registrationCreate and registrationWipeout options
- 09:09 PM Revision 75338ad3 (cdmlib): ref #7648 common base class AbstractHibernateTaxonGraphProcessor to deduplicate TaxonGraph methods
- 08:21 PM Revision 9a2d0b71 (cdmlib): ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments
- 08:21 PM Revision 15d2f2bf (cdmlib): ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments
- 07:54 PM bug #6303 (Closed): distribution map is moving too fast
- 03:31 PM bug #6303 (Worksforme): distribution map is moving too fast
- Works for me, thanks!
- 07:05 PM Revision 5e4cc7ea (cdmlib): ref #7648 solving session corruption problems in test suite for TaxonGraphHibernateListenerTest
- 04:54 PM Revision 196c665f (cdmlib): ref #7648 fixing inconsistency in test data and improving logging
- 04:18 PM Revision eb82a77d (taxeditor): ref #7063: add base element to named area tree in selection wizard to provide the posibility to check this and/or the elements of it
- 02:48 PM Revision 5e403d42 (cdmlib): ref #7791 using name.titleCache as title for TaxonGraphNodeDTO
- 02:23 PM feature request #7438: implement citation suggestion in dataportal
- done! the E+M portal is already configured accordingly
- 02:17 PM feature request #7438 (Resolved): implement citation suggestion in dataportal
- Applied in changeset commit:cdm-dataportal|1cda248cd9db631b3fd3b34c519f85a820283514.
- 02:22 PM Revision c6bed6e8 (cdm-dataportal): fix #7438 adding margin above secRef line
- 02:17 PM Revision 1cda248c (cdm-dataportal): fix #7438 secReference optional in separate line above accepted taxon
- 11:34 AM feature request #7806 (Closed): GfBio Term Search issues
- * Only use "search" endpoint
* Use interal_only flag
* Allow wildcard (*) search
* Move ontology abbreviation to t... - 11:29 AM feature request #7805 (Duplicate): GfBio Term Search issues
- * use only "search" endpoint and not the "suggest" endpoint
* use "interal_only" ontologies
* Allow '*' wildcard se... - 10:37 AM Revision 5642c43a (taxeditor): ref #7063: optimise setGrayed and check children in distribution selection wizard
- 10:37 AM Revision 61cd8ee1 (taxeditor): ref #7063: optimise setGrayed and check children in distribution selection wizard
- 09:45 AM feature request #7660 (Resolved): Indicate the row state in a NAT table via symbols
- Applied in changeset commit:taxeditor|1f677abd3ea026eab1835f317828d8be5ad6bd65.
- 09:45 AM Revision 1f677abd (taxeditor): fix #7660 Add icons to bulk editor for deduplication target/candidate
- 09:12 AM Revision 528d11e6 (taxeditor): Add @CanExecute method to handler to avoid class cast exception
- 08:45 AM Revision 136f91f9 (taxeditor): Merge branch 'develop' into taxonDescription
- 08:33 AM Revision e8f10d34 (cdmlib): adapt CdmPermissionClass
10/03/2018
- 12:32 PM feature request #7804 (New): add names of concept relationships as mouse over to synonymy tab
- It is hard to remember meanings of all signs of the concept relations. Would be of great help if the name of the rela...
- 01:22 AM Revision bc08a1ea (cdmlib): cleanup
10/02/2018
- 10:45 PM Revision c919ebc6 (taxeditor): ref #7674 Add icon to mark descriptions with sources
- 10:36 PM Revision 0092c621 (taxeditor): Fix matrix selection listener
- 09:48 PM Revision 33288925 (taxeditor): Merge branch 'develop' into taxonDescription
- 07:06 PM Revision 0962e21b (cdmlib): ref #7791 TaxonGraphService and TaxonGraphController implemented
- 06:48 PM Revision 97312e07 (cdm-vaadin): ref #7648 registering TaxonGraphHibernateListener for RefistrationUI
- 06:42 PM Revision 38588c66 (cdmlib): ref #7648 correct handling existing taxa without secReference
- 06:20 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names are created
- please review commit:335d7c23
especially
* `PreferencePredicate.TaxonGraphSecRefUuid` predicate ok?
* `Cdm... - 06:16 PM Revision 335d7c23 (cdmlib): ref #7648 introducing CdmPreferenceLookup for cached access to the CdmProperty with predicate 'TaxonGraphSecRefUuid' and others
- - using this Preference in TaxonGraphDaoHibernateImpl and TaxonGraphBeforeTransactionCompleteProcess
- adapting tes... - 06:05 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
- All names imported only by occurrences: (n=1435)
~~~ sql
SELECT n.nameId, n.nameCache, n.FullNameCache, n.uuid,... - 03:12 PM Revision 6b3c858a (cdmlib): ref #7648 cleaning up and attempting to fix TaxonGraphService test setup
- 02:42 PM Revision 3a77d114 (taxeditor): ref #7063: work in progress: selection in treeview of namedAreas for distribution editor should be more reasonable
- 01:06 PM Revision fe54edf5 (taxeditor): Clear Gfbio term synonym list when selection changes
- 01:05 PM Revision 2f93dafd (taxeditor): ref #7674 Show details and supplemental data for matrix selection
- 12:01 PM Revision 005f3c40 (cdmlib): ref #7648 all TaxonGraph updating done in a BeforeTransactionCompletionProcess implementation - TaxonGraphHibernateListener is working now
- 11:49 AM Revision fc9c0563 (taxeditor): ref #7063:handle orderedTerms without orderindex and order by lable
- 11:49 AM Revision be7068cc (taxeditor): ref #7063:handle orderedTerms without orderindex and order by lable
- 08:51 AM feature request #7803 (New): Add possibility to change feature of a fact
- It should be possible to change the feature of a fact.
This could be done by drag & drop into another group of facts...
10/01/2018
- 05:31 PM bug #7676 (Closed): Suchfunktionalität in Registration UI Dateneingabe
- Das war ein Problem mit der Verwechslung von TestProduktions und Test-System, guter Hinweis. Ticket geschlossen.
- 05:25 PM feature request #7802 (Duplicate): Portal-Info when an http-identifier "in preparation" is requested
- Ein heikeler Punkt ist, dass im editorial process, spätestens beim Proof-Reading Gutachter*innen oder Herausgeber*inn...
- 04:23 PM Revision e12facbf (taxeditor): ref #6554 Avoid unnecessary refreshs
- 03:23 PM Revision e15e805c (cdmlib): ref #7648 TaxonGraphService as dao and TaxonGraphObserver as TaxonGraphHibernateListener
- 03:05 PM Revision 2635a611 (taxeditor): minor
- 02:36 PM Revision 1e45e654 (taxeditor): ref #7440: filter common name references only when preference is set
- 02:22 PM Revision a9faed7f (taxeditor): ref #7440: filter common name references only when preference is set
- 01:52 PM Revision 1d76231c (taxeditor): ref #7063: better handling of preferences for distribution editor and other places
- 11:00 AM Revision e9ca40c5 (cdmlib): ref #7648 TaxonGraphService complete with full set of tests
- 10:17 AM Revision bb6c8049 (taxeditor): ref #6554 Evaluate expansion state for missing sections
- 09:50 AM Revision 00d02c3f (taxeditor): Add missing nattable dependencie to platform feature
- 09:49 AM Revision ac4c5087 (taxeditor): ref #6554 Pull up isCached() to abstract data viewer class
- 07:19 AM Revision 7a572190 (taxeditor): Merge branch 'develop' into detailsViewCache
09/29/2018
- 06:19 PM Revision c436b453 (cdmlib-apps): ref #2764 ref #4822 add WolrdDistCompl to query
- 06:18 PM Revision 981ec2fb (cdmlib-apps): improve commonName import validation
- 06:17 PM Revision c4591f7a (cdmlib-apps): ref #7798 import freetext nameInSource for occurrences best way and log all problems
- 06:14 PM task #7798 (In Progress): [AM, ERS]: Import (freetext) nameInSource correctly
- 04:35 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
- In einer nicht ganz kleinen Anzahl Fälle, für die der Name NUR als Freitext vorliegt, nicht als Link, wurde ein entsp...
- 03:39 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
- im Berlin Model gibt es ja 2 Felder in die man den Namen, der in der Quelle für eine Verbreitungsangabe verwendet wur...
- 11:40 AM task #7798 (Resolved): [AM, ERS]: Import (freetext) nameInSource correctly
- For occurrence sources and maybe also for common names and facts.
Occurrences:
1. case: freetext exists parall... - 12:32 PM feature request #7801 (Closed): AM: Deduplicate references
- Many references are duplicates. We could try to deduplicate them during import.
TODO:
* check for parameters l... - 12:30 PM feature request #7800 (Closed): Parse preliminary RefDetails
- There are >40000 RefDetails imported as the are preliminary. We could try to parse them during import.
- 12:04 PM feature request #7799 (Resolved): AM: Parse authorteams
- many of them are single persons and also the resulting persons/teams could be parsed probably
- 11:19 AM Revision 173bcffb (cdmlib-apps): revert unwanted last commit partly
- 11:16 AM Revision 94853726 (cdmlib-apps): ref #3986 remove It(I) and IT(S) from imported areas
- 11:16 AM Revision 07995a3a (cdmlib-apps): Add label to EM feature tree
- 11:15 AM Revision 31938ede (cdmlib-apps): cleanup
- 01:26 AM task #7369: Handle taxonomically valueless taxa correctly
- ERS (2015-08-15):
zum Thema Rubus lässt sich sagen:
die 19 Taxa, die im Baum direkt unter Plantae included sind... - 01:20 AM task #7796: [CHECK] Handle Bibliography Name Facts correctly
- ERS: (2014-11-08)
diese Angaben in eckigen Klammern hinter der eigentlichen nom.ref. stammen aus dem ILDIS-Import.... - 12:48 AM task #7435: Handle also published in correctly
- We keep it as a name fact for now.
- 12:47 AM task #7435 (In Progress): Handle also published in correctly
- Only the remaining 2 comments need to be handled by ERS (see mail). Maybe also some name notes in CDM.
The issue ... - 12:41 AM feature request #7797: Second nomenclatural reference
- ein Einzelfall:
Reynoutria sachalinensis (F. Schmidt) Nakai (7300000): hier steht in den Detail notes
„in T. Mor... - 12:14 AM feature request #7797: Second nomenclatural reference
- Auräumen von E+M:
Daher einige Fragen:
* Können wir bei denen mit Klammern und & die Klammer und das & löschen?...
09/28/2018
- 11:57 PM bug #7456 (Duplicate): E+M: NameFacts von ILDIS Daten
- Duplicates #7435, #7437 and #7796
- 11:48 PM feature request #7797 (New): Second nomenclatural reference
- In E+M and other databases second or even more nomenclatural references exist or are required.
This is currently h... - 08:51 PM task #7435: Handle also published in correctly
- ... achso, und es gibt auch noch einige, die nicht mit „&“ oder „=“ oder „or“ anfangen, wie die meisten anderen. Ist ...
- 08:18 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
- ~~~ sql
SELECT n.NameCache, n.FullNameCache, n.NomRefFk, pt.PTRefFk, fact.NameFactId, fact.PTNameFk, fact.NameFact, ... - 08:01 PM task #7796 (Resolved): [CHECK] Handle Bibliography Name Facts correctly
- There are 13568 name facts of type "Bibliography" (Cat=3).
These are currently attached to the according names as ... - 06:55 PM Revision 67861132 (cdmlib): ref #7345: fix dao method to get entities with special marker and pattern in titleCache
- 06:41 PM feature request #7345: [E+M] Common name references selectable in TaxEditor
- now the selection dialog searches only for references with marker of markerType commonNameReference and when creating...
- 06:40 PM Revision 601b8e6e (cdmlib): ref #7345: add dao and service methods to get UuidAndTitleCache marked with a special markerType
- 06:36 PM Revision 93682936 (taxeditor): ref #7345: for common names only common name marked references are selectable now
- 06:15 PM feature request #7440 (Resolved): E+M mark common name reference with according marker
- The markers were imported
- 04:18 PM feature request #6554: The details views are newly created with every change of the focus
- The count cache might be also something for the data portals
- 04:17 PM feature request #6554: The details views are newly created with every change of the focus
- Patrick Plitzner wrote:
> Another bottleneck is
>
> ~~~
> org.hibernate.collection.internal.PersistentSet.size(... - 02:45 PM feature request #6554: The details views are newly created with every change of the focus
- Another bottleneck is
~~~
org.hibernate.collection.internal.PersistentSet.size()
org.hibernate.collection.inter... - 03:59 PM Revision 53f6e21d (cdmlib): avoiding NPE when relationship type = null
- 03:57 PM Revision d4babfbb (cdmlib): ref #2764 ref #3817 move negative endemism states down in order
- 03:48 PM Revision 80b84cd4 (taxeditor): Merge branch 'develop' into detailsViewCache
- # Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/AbstractEntityCollectionE... - 03:19 PM Revision a2f11b66 (cdmlib-apps): latest state for EuroMedActivator
- 03:19 PM Revision 9a9b6083 (cdmlib-apps): ref #2764 ref #4822 distinguish EM and other areas status handling and use specific endemism status and annotation types
- 03:18 PM Revision aff7bab0 (taxeditor): ref #7063:fix that the last selection always appears in next field in distribution editor
- 03:18 PM Revision 04f83f13 (taxeditor): ref #7063:fix that the last selection always appears in next field in distribution editor
- 03:15 PM Revision f8a8d72a (cdmlib): ref #4822 use specific annotation type for distribution information
- 03:14 PM Revision e1d2afdb (cdmlib): cleanup
- 03:14 PM Revision 093a2fae (cdmlib): ref #2764 ref #3814 add endemic non and unknown status
- 02:25 PM Revision 69957587 (taxeditor): ref #6554 Evaluate expansion state for remaining elements
- 01:54 PM Revision 9d0d72ef (taxeditor): ref #6554 Cache preferred terms in TermManager
- 01:53 PM Revision ae2b6d7b (taxeditor): ref #6554 Cache preferred terms in TermManager
- 01:25 PM Revision 69955d6c (taxeditor): ref #6554 Revert caching of NameDetailElement
- 01:24 PM Revision a8ef58b2 (cdmlib): ref #7648 initial implementation of TaxonGraphService with tests and TaxonGraphObserver
- 11:20 AM task #7795: untilis xml DataSets creation without "[NULL]" values
- now that we can create datasets without "[NULL]"s we can clean up the test datasets if needed.
If you don't feel lik... - 11:14 AM task #7795 (Resolved): untilis xml DataSets creation without "[NULL]" values
- Applied in changeset commit:cdmlib|a400c76fcbbe92ca47c01798c378a44bf73a3e4d.
- 11:13 AM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
- After upgrading to Unitils 3.x it was needed to add "[NULL]" values to the attributed in the xml datasets since the `...
- 11:14 AM Revision a400c76f (cdmlib): fix #7795 untilis xml DataSets can optionally be created without "[NULL]" values
- 11:14 AM Revision b1e975a8 (cdmlib): minor issue with return type of listToTaxonRelationships() fixed
- 10:49 AM Revision ed60b90e (taxeditor): ref #6554 Evaluate expansion state at widget creation time
- 10:07 AM Revision 515cd3ec (taxeditor): ref #6554 Cache NameDetailElement (experimental)
09/27/2018
- 06:24 PM Revision 143dd6ba (taxeditor): ref #6554 Rename ISelectable interface to avoid ambiguity for checkboxes
- 06:21 PM Revision 25fe366b (taxeditor): ref #6554 Implement update() for taxon details view sections
- 06:20 PM Revision 1685391e (taxeditor): ref #6554 Fix checkbox selection in update() method
- 04:43 PM Revision 90524380 (taxeditor): ref #6554 Evaluate expansion state at widget creation time
- # Conflicts:
# eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/e4/details/DetailsViewerE4.java - 03:51 PM Revision 9c8494ea (taxeditor): ref #7063: fix preselection of vocabulary
- 03:47 PM task #7455: [Check] Check all markers for correctnes
- The publish flag (=false) is related to distributions with no status in BM. This is handled now in #2764 and #4822
- 03:44 PM feature request #7063: Improve the area selection wizard for distribution editor
- now the admin can define the vocabulary and in the distribution editor itself the shown areas can be defined.
- 03:42 PM Revision 4f25e642 (taxeditor): ref #7063: add vocabulary selection for distribution editor and area selection in editor
- 03:27 PM Revision 781b44c5 (cdmlib-apps): ref #7420 updates to phycobank import according to requirements
- 03:05 PM task #7420: Import for higher taxon graph for phycobank
- You should check by
~~~ sql
SELECT titleCache, count(*) as n
FROM TaxonName tn
GROUP BY tn.titleCache
Having ... - 02:59 PM task #7420 (Resolved): Import for higher taxon graph for phycobank
- I did run a new import to test.cdm_phycobank. Please check the results.
One issue I can see is that the existing I... - 02:24 PM task #7420: Import for higher taxon graph for phycobank
- Andreas Kohlbecker wrote:
> Hi Andreas,
>
> a small change of the strategy: All Taxa and TaxonRelations which bel... - 12:37 PM Revision 7cc3798b (taxeditor): rename Database repair functionality to repair functionality
- 12:17 PM bug #7794 (Closed): Update TaxonNodeWizard
- The taxonnode wizard needs to be updated, the taxon, parent and classification should not be editable and the "open i...
- 11:35 AM Revision 683272b3 (taxeditor): External link type is only type in details view
- 11:25 AM Revision 93f8c270 (taxeditor): fix update hybrid flag
- 11:20 AM feature request #7793 (Closed): Master ticket for E+M editor issues
- Following issues should be solved for E+M migration:
Perspectives:
* start perspective with reduced number of w... - 11:01 AM Revision 18b043ef (taxeditor): ref #6554 Implement update() for DeterminationDetailElement
- 11:00 AM Revision 81215eb9 (taxeditor): ref #6554 set cached collection to null when entity is null
- 10:20 AM Revision 59916c08 (taxeditor): ref #6554 Avoid double setInput() on managedForm
- 10:19 AM Revision 2e1e89cd (taxeditor): ref #6554 Cache collection for entity collection sections
- 10:02 AM Revision 2a6c978e (taxeditor): fix typos
- 09:57 AM Revision e11bc05e (taxeditor): add warning for referencing objects in details view and code cleaning
- 09:37 AM Revision 490c3c24 (cdmlib): check for protected caches in cdmlight export
- 09:07 AM Revision 57ed8811 (cdmlib): smaller changes in cdmlightexport
- 09:06 AM Revision eed70a73 (cdmlib): smaller changes in cdmlightexport
09/26/2018
- 11:25 PM Revision 005dd7a3 (cdmlib): cleanup
- 11:14 PM Revision 37bb08e2 (cdmlib-apps): cleanup
- 06:17 PM Revision 9fa90675 (taxeditor): Add missing i18n
- 06:16 PM Revision 12fc6c2f (taxeditor): Add missing i18n
- 06:16 PM Revision 93246c1b (taxeditor): ref #6554 Fix class cast exception
- 05:43 PM task #7420: Import for higher taxon graph for phycobank
- Hi Andreas,
a small change of the strategy: All Taxa and TaxonRelations which belong to the classifications-graph ... - 04:00 PM Revision 9ef8582f (taxeditor): ref #6554 Cache form section for taxon and derived unit details view
- 01:38 PM Revision 4e19a89d (cdm-vaadin): ref #7648 using CdmEntityInstantiator to disentangle the handling the creation of new taxon names for registrations
- 01:35 PM Revision 3aad942d (cdm-vaadin): using CdmEntity.isPersisted()
- 12:17 PM Revision 6d636c9e (cdm-vaadin): ref #7648 generalizing bean instantiation in cdm presenters
- 11:35 AM feature request #6554 (In Progress): The details views are newly created with every change of the focus
- 11:34 AM feature request #6554: The details views are newly created with every change of the focus
- The performance loss is separated in two areas:
1. SWT/UI rendering
* can be optimized by caching the UI widgets... - 10:01 AM Revision 5d2a4b43 (cdmlib): remove unnecessary warning in cdmlight export
09/25/2018
- 03:12 PM Revision 3b7513fa (taxeditor): ref #6554 Avoid re-rendering of details view for same selection
- 02:05 PM Revision f0fe6915 (cdm-dataportal): ref #7788 displaying registration date and institution - layout
- 02:04 PM Revision 250f2a96 (cdm-dataportal): ref #7788 displaying registration date and institution - formatting the datetime
- 01:56 PM Revision 79052a88 (taxeditor): Fix potential NPE
- 01:49 PM bug #7792 (Resolved): Rendering of context menu of factual data view is super slow
- Applied in changeset commit:taxeditor|2a6e2626fddd5f6637955f7f7479468c03767929.
- 01:48 PM bug #7792 (Closed): Rendering of context menu of factual data view is super slow
- 01:49 PM Revision 2a6e2626 (taxeditor): fix #7792 Cache global language for rendering speed up
- 01:34 PM Revision 959bcc8d (cdmlib-apps): ref #3986 , ref #7346 remove some areas from area import
- 01:05 PM Revision 442f63c3 (cdm-dataportal): ref #7788 displaying registration date and institution - adapting to changed DTO
- 12:31 PM feature request #7791 (Closed): Visualize the phycobank higher taxon graph
Visualization as a layered graph which allows to explore the graph interactively
Current concept:
* potenti...- 12:00 PM Revision 8da50b71 (taxeditor): ref #6554 Avoid double destruction of details view sections
- 11:57 AM Revision 9f2542a8 (cdmlib): ref #7788 adding institutionTitleCache to RegistrationDTO
- 11:11 AM Revision 4982a63b (cdmlib-apps): cleanup
- 11:09 AM bug #7447: ERS: Fix misapplied name issues for E+M common names.
- AM:
...
Lediglich für den letzten Fall „Hieracium glaucinum subsp. glaucinum“ bräuchte ich noch Feedback von di... - 11:07 AM feature request #7788 (In Progress): Registration page shows registration date and office
- 11:04 AM Revision 9ccb5ab6 (cdmlib): ref #7783 assuring registrations have an identifier when saved - adapting test
- 10:25 AM Revision b7d7d26d (cdm-dataportal): ref #7788 displaying registration date and institution
- 10:25 AM Revision 63744291 (cdmlib): ref #7788 adding institution to RegistrationDTO
- 10:04 AM Revision c8dd76ae (cdm-vaadin): removing commented code
- 10:02 AM Revision de9f5331 (cdmlib): ref #7783 TaxonNamePart with uuid & assuring registrations have an identifier when saved
- 09:59 AM bug #7783 (Resolved): NamePopupEditor new buttons for genus and species
- completed now, please review
- 09:58 AM bug #7630 (Resolved): blocking registration relations get lost after saving adding a typedesignation to a newly created "typification only" registration
- fixed, please review
- 09:57 AM Revision 510ac6e7 (cdm-vaadin): ref #7630 fixing creation of blocking relations (part 2) and assuring registrations have an identifier when saved
- 09:55 AM Revision 5055127f (cdm-vaadin): ref #7783, ref #7630 fixing creation of blocking relations (was broken since commit:f6d73035
- 09:30 AM task #7346 (In Progress): [CHECK] Use separate area vocabulary for common names
- 08:42 AM Revision ead9700e (taxeditor): code cleaning and fix NPE
- 07:32 AM Revision ed8e3da9 (cdmlib): ref #7589 Fix initial loading of matrix
- 07:09 AM Revision d6455c9e (cdmlib): ref #7775 Fix source information in description titlecache
09/24/2018
- 09:25 PM Revision 8ef74e91 (cdmlib-apps): ref #7346 use E+M area vocabulary for common names
- 05:48 PM Revision 98c2f401 (cdm-vaadin): ref #7783 using WeaklyRelatedEntityCombobox in TaxonNameEditor: add, edit buttons working and enabled state updating ok
- 03:36 PM Revision 6ed2f1ef (taxeditor): missing english translation
- 03:30 PM Revision 958e78a4 (taxeditor): ref #7761: add invalid designation and adapt right click menu for name editor
- 03:30 PM feature request #7790 (New): [DISCUSS] E+M: Language-Area Mapping
- E+M in BM allows a mapping for all languages to the available area (or the other way round - need to check in BM edit...
- 03:04 PM task #7789: redirect URIs referencing Drupal nodes to lowercase URI
- This could be implemented by adding an according redirect rule to the Drupal `.htaccess` file with the following dire...
- 02:59 PM task #7789 (New): redirect URIs referencing Drupal nodes to lowercase URI
- Ich habe mich also nochmals eingehender mit diesem Thema beschäftigt:
Nach dem was in https://stackoverflow.com/q... - 02:50 PM Revision 2194a7c6 (taxeditor): merge fragment.e4.xmi
- 02:48 PM bug #7745: Subtree filter for dataportal services
- For the polytomous keys the following webservices need to be filtered by the subTree to avoid unpublished taxa showin...
- 02:48 PM bug #7745: Subtree filter for dataportal services
- Andreas Müller wrote:
> So can we close the ticket?
You were too fast ;-)
- 02:44 PM bug #7745: Subtree filter for dataportal services
- So can we close the ticket?
- 02:33 PM bug #7745: Subtree filter for dataportal services
- To the issues 1) - 3) reported in #7745#note-17:
1) You are right, this web service behaves ok.
2) I reported t... - 01:21 PM Revision 7ccb7304 (taxeditor): ref #7424: after updating name editor set menu to all containers to avoid missing menu
- 12:29 PM feature request #7502 (In Progress): Add further columns to bulk editor
- Patrick Plitzner wrote:
> @Andreas: Please review the first implementation of this for id and uuid
Looks ok.
... - 12:14 PM Revision 2d25257c (cdm-vaadin): ref #7783 implementing WeaklyRelatedEntityCombobox according PagingProvider
- 11:51 AM feature request #7775 (Resolved): Factual Data label issue
- Applied in changeset commit:cdmlib|3c0cadbbcdb4d44a395a6ab3131090ef811eac3f.
- 11:50 AM Revision 3c0cadbb (cdmlib): fix #7775 Add source information to description titlecache
- 11:45 AM feature request #7788 (Closed): Registration page shows registration date and office
- Registration page needs to show the registration date and office
- 08:08 AM bug #7787: default occurrence view shows media also in expanded state
- Vielleicht sollte man das per java-script machen, das Bild ist auf der Seite schon vorhanden und müsste nur an eine a...
- 08:08 AM bug #7787: default occurrence view shows media also in expanded state
- [Katja]:
ich hatte mir das ja auch mal angesehen und soweit ich das verstanden habe, sind die Bilder sozusagen die... - 08:07 AM bug #7787 (New): default occurrence view shows media also in expanded state
- Bilder werden nur im collapsten Zustand angezeigt werden, expanded kann man sie nicht sehen.
: E+M mark common name reference with according marker
- Done. Still needs to be tested.
- 02:20 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
- Applied in changeset commit:cdmlib-apps|59d588d3618128a6980f1d9bbf10e840f23e049c.
- 02:20 PM Revision 853106aa (cdmlib-apps): ref #7440 add common name marker to common name references
- 02:19 PM Revision 4b241d73 (cdmlib-apps): cleanup
- 02:15 PM Revision a077e729 (cdmlib): add parental species ext to BerlinModelTransformer
- 02:14 PM Revision 32eec7cd (cdmlib): cleanup
- 01:24 PM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- ~~~
SELECT DISTINCT SourceNumber2Ref.*, r.*
FROM SourceNumber2Ref INNER JOIN
Reference r ON SourceNumber2Re... - 08:26 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- bei den OccurrenceSources sind ein paar kaputt gegangen, vermutlich weil die Identifier hier nicht als Zahlen sondern...
- 08:25 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- irgendwas ist auch noch seltsam bei folgenden Taxa:
Juncus acutiflorus Hoffm.
Juncus acutus L.
Juncus anceps Lah...
09/21/2018
- 05:36 PM bug #7786 (In Progress): ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- 05:35 PM bug #7786 (Resolved): ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- Some of them only have a trailing whitespace problem and can be found by
~~~
SELECT *
FROM emOccurrenceSource
... - 04:33 PM task #7785: CdmUserHelper caches permission information
- Can the cache of the presenter be used in the CdmUserHelper to avoid loading the entities again?
- 04:25 PM task #7785 (Closed): CdmUserHelper caches permission information
- CdmUserHelper has been identified being hostspot in the cpu time analysis:
Caching entit... - 03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
- 03:45 PM task #7784 (Resolved): deduplicate and harmonize ClassificationController methods
- Applied in changeset commit:cdmlib|c3be000f7a4dee3e84481b0d1a020109cdf9ad59.
- 03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
- * ClassificationPortalController needs to be a subclass of ClassificationController
* duplicate and deprecated metho... - 03:45 PM Revision c3be000f (cdmlib): fix #7784 deduplicating and harmonizing ClassificationController methods
- 01:25 PM bug #7783 (Closed): NamePopupEditor new buttons for genus and species
- For species the genus can only be selected from existing genera. In order to use a not existing genus it is currently...
- 01:17 PM feature request #7782 (New): for a new synonym it should be possible to change it to missaplied name without saving
- As comfortable way to create a MAN it would be good that changeToMisappliedName can be done for not persisted synonym...
- 01:10 PM bug #7424: right click menu does not show up in name editor
- the problem appears because the menu is set to disposed when a groupContainer is removed.
- 01:01 PM feature request #7594 (Closed): RegistrationWorkingsetEditor click on new serveral times
- problem solved, please review.
- 01:00 PM feature request #7594 (Resolved): RegistrationWorkingsetEditor click on new serveral times
- Applied in changeset commit:cdm-vaadin|edce7749ded3f3f7f3860106f45235532afe09a2.
- 01:00 PM Revision edce7749 (cdm-vaadin): fix #7594 RegistrationWorkingsetEditor new name button disbled when opening name popup editor
- 11:45 AM bug #7187: ReferenceEditor: saving with DOI casues exception
- bitte review
- 11:44 AM feature request #3234 (Closed): implement cdm service method to collect SpecimensAndObservations via taxon
- 11:42 AM bug #7723 (Resolved): PhycoBank unpublished data must not be visible in Portal
- Issue fixed, only PUBLISHED registrations are visible now, please review.
- 11:14 AM Revision b9188a94 (cdmlib): ref #7723 adding missing permission check to RegistrationServiceImpl to supress unpublished registrations
- 10:40 AM bug #7781 (In Progress): original spelling is missing for accepted taxon in taxon page
- Hallo,
im Portal wird das “as ....“ nicht angezeigt
Beispiel:
http://caryophyllale... - 09:37 AM feature request #7780 (New): improve order of nomenclatural status types
- the order of nomenclatural status type should represent the importance of the type. Types used often, should be at th...
- 08:50 AM bug #7779 (Closed): swagger UI broken after springfox-swagger2 upgrade
- after upgrading springfox-swagger2 to version 2.6.1 (commit:4518f4b) the swagger UI is broken.
Presumably an upgrad... - 12:10 AM bug #7449 (Resolved): E+M: Import common names with no regionFk correctly
- The empty ones are all common names for ILDIS taxa:
~~~
SELECT n.FullNameCache, n.NameCache, cn.*
FROM emCommonN...
09/20/2018
- 11:44 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
- Ticket is fixed. Remaining issue is a data issue. Needs to be fixed by ERS.
- 11:43 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
- der Import für die postulated … ist fertig. Es gibt ein paar Fälle, bei denen die Namen nicht kursiv gesetzt sind. We...
- 03:57 PM feature request #7769 (In Progress): E+M: Handle postulated parental species as taxon extensions
- 11:39 PM bug #7424: right click menu does not show up in name editor
- Add this to current milestone as it is critical (often mentioned by users)
- 06:11 PM Revision 621f2ae0 (cdm-dataportal): ref #7723 supressing un-published registrations in the reference page
- 06:10 PM Revision ae472365 (cdm-dataportal): ref #7723 supressing un-published registrations in the reference page
- 03:58 PM task #7455 (In Progress): [Check] Check all markers for correctnes
- 03:03 PM Revision 95116a15 (taxeditor): ref #7775 i18n
- 03:03 PM Revision d9fbbe86 (taxeditor): ref #7775 Add option "Create new factual data set with sources"
- 03:03 PM Revision 1d4ca46e (taxeditor): ref #7775 Renamed context menu label
- 01:56 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
- 01:56 PM bug #7778 (Resolved): identifier links missing in taxon relations footnotes
- Applied in changeset commit:cdm-dataportal|c714960cc180ca547c9a9ddb25776c48e06f6141.
- 12:12 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
- identifier links missing when a footnote is created for taxon relations
see e.g.: http://caryophyllales.org/nepe... - 01:56 PM Revision c714960c (cdm-dataportal): fix #7778 display of doi and other identifiers in taxon relations section
- 12:27 PM bug #3276: NPE for "Move Elements" context menu option
- please review
- 12:26 PM bug #3276 (Resolved): NPE for "Move Elements" context menu option
- Applied in changeset commit:taxeditor|90f49fe41d5816b7fce308a5200a950550758e1e.
- 12:25 PM Revision 90f49fe4 (taxeditor): fix #3276: avoid exception when moving unpersisted facts
- 12:15 PM Revision 7e1f5d18 (cdm-dataportal): fix #7742 unsubscribing other beans from event bus on dispose()
- 12:12 PM Revision 8e15d0fb (cdm-dataportal): ref #7599: create link and render array when description is URL in compose_sequences
- 12:04 PM Revision 58c1a035 (cdm-dataportal): revert last changes
- 11:27 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
- 11:27 AM bug #7773 (Closed): when changing rank the hybrid section is empty
- please review
- 11:25 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
- Applied in changeset commit:taxeditor|2e765343e89b57f860f7661ad06385608b991d94.
- 11:26 AM feature request #2444 (Resolved): Disable binom and trinom hybrid flag when epithets are not available
- the problem of disappearing hybrid section is solved, so we can close this ticket as well.
please review - 11:25 AM Revision 2e765343 (taxeditor): fix #7773: update only the checkboxes state when changing rank
- 11:14 AM bug #7777 (Closed): NPE on login attempt after logout
- login attempt after logging out
~~~
Caused by: java.lang.NullPointerException
at eu.etaxonomy.cdm.vaadin.view.L... - 10:42 AM Revision f1239704 (cdm-dataportal): ref #7599: fix problem with links in descriptions
- 09:41 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions added to it
- Applied in changeset commit:cdmlib|74ab8c12e9283ca97969609df026ec62708aa9f5.
- 08:12 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions added to it
- If a SpecimenDescription is added to the descriptive data set the source of the data set should be copied to the spec...
- 09:37 AM Revision d95dc737 (taxeditor): fix #7776 Add sources to details view for specimen descriptions
- 08:49 AM Revision 6d1422f1 (taxeditor): fix #7776 Adapt to service layer change
- 08:44 AM feature request #7599: treeView for specimen data in dataportal
- Andreas Kohlbecker wrote:
> 2)
>
> diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc... - 08:44 AM Revision 74ab8c12 (cdmlib): fix #7776 Add descriptive data set sources to specimen descriptions
- 08:10 AM feature request #7775 (Closed): Factual Data label issue
- * ~~change context menu entry for creation of a new description to "New Factual Data Set"~~
* ~~add alternative for ... - 07:54 AM feature request #7774 (Closed): Show description source for description elements
- In the details view the list of sources of description elements should contain the source of the description but it s...
09/19/2018
- 04:24 PM feature request #7502 (Feedback): Add further columns to bulk editor
- @Andreas: Please review the first implementation of this for id and uuid
- 04:23 PM Revision bcc1d18a (taxeditor): ref #7502 Add option to hide and show columns
- 04:20 PM Revision 436a661e (taxeditor): ref #2444: enable and disable binom/trinom flag
- 04:18 PM feature request #2444 (In Progress): Disable binom and trinom hybrid flag when epithets are not available
- this is implemented now, but there is still a bug see #7773
- 04:15 PM Revision 92a795af (taxeditor): ref #7502 Add id and uuid to bulk editor
- 04:12 PM bug #7773 (Closed): when changing rank the hybrid section is empty
- When changing the rank the hybrid section is updated, but after this the section is empty. Resize or close and open t...
- 03:14 PM task #2406: DeterminationEventElement is lacking references
- Now, you can select the determination event to edit its supplemental data.
However, it is not possible anymore to se... - 03:07 PM task #2406 (Resolved): DeterminationEventElement is lacking references
- Applied in changeset commit:taxeditor|097d348b1b100faae233b8574a4a090de48fdbdd.
- 03:07 PM Revision 097d348b (taxeditor): fix #2406 Allow editing supplemental data for determination event
- 02:27 PM feature request #7674 (Resolved): Show taxon descriptions in character matrix editor
- 02:16 PM bug #7772: Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
- also rename attribute "term_id"
- 02:15 PM bug #7772 (Closed): Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
- to be consistent. If other TermBase classes are relevant they need an own table anyway, similar to the handling of (d...
- 02:11 PM Revision eeede4bd (taxeditor): Merge branch 'develop' into taxonDescription
- 02:00 PM feature request #7771 (Feedback): Format Misapplication search results as MAN, not as accepted taxa
- If a search result contains a misapplication only as a taxon related to an accepted taxon in the search filter it sho...
- 12:28 PM Revision 51308344 (taxeditor): ref #7674 Allow editing descriptions in details view
- 10:41 AM bug #7424 (In Progress): right click menu does not show up in name editor
- this problem appears only for synonyms and the accepted taxon, for missapplied names and pro parte synonyms the menu ...
- 10:15 AM bug #7541 (In Progress): Insufficient rights lead to missing focus in name editor
- 10:14 AM bug #7541: Insufficient rights lead to missing focus in name editor
- the missing possibility to set the focus on the name editor was because of a wrong permission check.
- 10:10 AM Revision 86a05229 (taxeditor): ref #7541: fix permission handling in name editor
- 08:19 AM Revision 5e15b964 (taxeditor): Merge branch 'develop' into taxonDescription
- 08:16 AM Revision d9f9f1df (cdmlib): Merge branch 'develop' into taxonDecription
09/18/2018
- 04:22 PM Revision 59d588d3 (cdmlib-apps): fix #7769 implement postulated parental species as extension
- 04:20 PM Revision 91f5b910 (cdmlib-apps): ref #3992 fix sec/last scrutiny for MANs
- 04:14 PM Revision c29d1c8f (cdmlib-apps): cleanup and improve BM validators
- 04:13 PM Revision ede99ce1 (cdmlib-apps): cleanup
- 03:37 PM feature request #7770 (New): E+M: Handle extensions like "postulated parental species" in data portal
- for details see #7769.
Postulated parental species are now implemented as TaxonBase Extensions of ExtensionType "p... - 03:28 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
- Postulated parental species are Name.Notes in BM. They should become Extensions of respective type, to be shown behin...
- 01:57 PM feature request #4129: Allow filtering by OriginalSourceType
- KL an ERS:
parallel zu den Import Issues für Euro+Med arbeiten wir auch die Editor Tickets ab, die Euro+Med betref... - 01:28 PM Revision ca2ed7a5 (cdm-dataportal): ref #7766 adapting test to modified data - 2.
- 12:48 PM feature request #7283: Improvements for alternative identifier search
- ~~In search result the alternative identifier and the titlecache of the reference should be displayed (behind titleCa...
- 12:43 PM feature request #7283 (In Progress): Improvements for alternative identifier search
- 12:48 PM Revision 1b6b0ad8 (taxeditor): ref #7283: add identifier string in reference selection if searched for identifier
- 12:17 PM Revision 8b2a5cc0 (cdm-dataportal): ref #7766 adapting test to modified data
- 11:58 AM Revision 68024392 (taxeditor): ref #7674 Adjust order of matrix rows
- 11:36 AM feature request #7345 (Resolved): [E+M] Common name references selectable in TaxEditor
- added a new markerType 'common name reference' and everytime a reference is added as source reference a marker of thi...
- 11:33 AM Revision 809f6237 (taxeditor): ref #7345: every reference used for a common name gets a marker 'common name reference'
- 11:21 AM Revision 0373fd3e (cdmlib): ref #7345: add markertype commonNameReference
- 07:52 AM Revision 2a2911e8 (cdmlib): javadoc
- 07:45 AM Revision e739cccb (cdmlib): ref #7745 filter getSynonymy for subtree - fix bug in checkExistsSubtreeAndAccess
09/17/2018
- 10:55 PM Revision 2941b4e5 (cdmlib): ref #7745 filter getSynonymy for subtree - fix compile issue in cdmlib print
- 10:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- I will try to write tests for the remaining issues and move them to a new ticket.
- 04:42 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- I moved synonym search and classification/subtree filters to new ticket #7764 as it is not really related to the topi...
- 03:22 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- The classification filter does NOT have any effect in the webservice (1). But it has in the service(2)!
I tested (... - 10:03 PM bug #7745 (Resolved): Subtree filter for dataportal services
- By the way there might be not implemented webservices that need to be protected, e.g. for PolytomousKeys. I think the...
- 10:02 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> Open issues:
>
> 3) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/7114... - 09:57 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> Open issues:
>
>
> 2) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/... - 04:53 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> Open issues:
>
> tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uui... - 02:59 PM bug #7745 (Feedback): Subtree filter for dataportal services
- Open issues:
tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uuid=0ad45274-c5cf-4a95-aa1b-dc698e7... - 01:33 PM bug #7745 (Resolved): Subtree filter for dataportal services
- Can you please do the final review and close if everything works as expected (but we will probably get user feedback ...
- 09:01 AM bug #7745 (Feedback): Subtree filter for dataportal services
- Have to reopen. Freetext search on context does not yet work as expected. Searching for "All" returns no result with ...
- 08:48 AM bug #7745 (Closed): Subtree filter for dataportal services
- From all what I tested it works. I never got an "external" taxon.
- 09:54 PM Revision bc9db6bf (cdmlib): ref #7745 filter getSynonymy for subtree
- 09:54 PM Revision d5d8d750 (cdmlib): return error if passing not existing classification uuid to taxon search web service
- 09:53 PM Revision 5ca67609 (cdmlib): cleanup
- 08:01 PM feature request #7720: use new taxonRelationshipsDTO webservice for all taxon relations
- Remaining issues handled in #7766
- 07:52 PM feature request #7720 (Resolved): use new taxonRelationshipsDTO webservice for all taxon relations
- I think this was already done in 5.3. Maybe we can close **this** ticket as duplicate as #7658 includes by title all ...
- 08:00 PM feature request #7658 (Closed): use new taxon relationship DTO webservice in portal
- Close this ticket. Remaining (and new) issues moved to #7766
- 05:02 PM Revision bf312a2e (taxeditor): ref #7674 Adapt to service layer change
- 05:02 PM Revision e6b120bb (cdmlib): ref #7674 Fix LIE
- 04:47 PM Revision 79f9e857 (cdm-dataportal): ref #7767 checking all possible tag types for sec microreferences
- 04:33 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
- duplicates #7767
- 04:32 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
- 04:32 PM bug #7767 (Resolved): Incorrect handling of secundum detail reference in formatter
- Applied in changeset commit:cdmlib|0ef1a15ed1a417160deec0b112f36a12de7363dc.
- 04:29 PM bug #7767 (Closed): Incorrect handling of secundum detail reference in formatter
- The sec detail is formatted as TagEnum.secundum not TagEnum.secMicroRef. This results in strange behavior on data por...
- 04:32 PM Revision d969ee7a (cdmlib): cleanup
- 04:31 PM Revision 0ef1a15e (cdmlib): fix #7767 fix wrong TagEnum for sec detail
- 03:57 PM bug #7656 (Duplicate): Adapt inverse symbol for MisappliedName relationship type
- 03:56 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- AM an WGB:
die MANs sollten jetzt auch sichtbar sein und hoffentlich besser formatiert. Ein Problem ist noch, welc... - 12:33 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- ... and don't forget to adapt csv files.
- 12:32 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- ... and for pp Synonyms
~~~
UPDATE DefinedTermBase
SET symbol='⊃p.p.' , inverseSymbol = 'p.p.'
WHERE uuid= '8... - 12:17 PM bug #7514 (In Progress): Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- Critical because in use already
- 12:17 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- For misapplied names (we may think about using a larger dash, also maybe change idInVocabulary)
~~~
UPDATE Define... - 03:54 PM Revision 0bc7725a (taxeditor): Fix initialization of specimen selection dialog
- 03:30 PM Revision e5926729 (cdm-dataportal): ref #7766 creating testcase - currently ignored
- 03:27 PM bug #7766 (Closed): Remaining issues for using relationship DTO webservice in portal
- for details see #7658
* taxonrelation footnotes missing (see #7658#note-51 for details)
* sort order of the rel... - 03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
- Andreas Kohlbecker wrote:
> The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are no... - 01:44 PM bug #7047 (In Progress): Vaadin UI and View scope beans are not always destroyed correctly
- 01:44 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
- The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are not destroyed correctly. At lea...
- 11:39 AM bug #7047 (Resolved): Vaadin UI and View scope beans are not always destroyed correctly
- 02:53 PM Revision 75d544f0 (taxeditor): Merge branch 'develop' into taxonDescription
- 02:52 PM Revision 99113da9 (cdmlib): Merge branch 'develop' into taxonDecription
- 02:51 PM Revision 437d2b64 (taxeditor): minor
- 02:22 PM task #7757 (Closed): Replace deprecated hibernate @Index annotation
- The creation of a new database works as expected, the creation of the index works without exception and the search wo...
- 01:28 PM task #7757: Replace deprecated hibernate @Index annotation
- Please review, e.g. by creating a new database with the new code and compare if all table names and indexes work simi...
- 02:14 PM bug #7638 (Resolved): problem with media data missing meta data
- 01:50 PM feature request #7644 (Closed): Add "continued" flag to (Verbatim)Timeperiod
- 01:23 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- The code changes look ok.
- 01:42 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
- There is still a comma missing beetween the types if there are >1 types.
- 01:30 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- We should think about throwing an exception in the moment when the cacher is used incorrectly (e.g. for volatile obje...
- 01:25 PM feature request #7765 (New): Advanced UI to define the subtree filter in data portal
- Follow up from #7759
- 01:23 PM bug #7759 (Closed): classification subtreefilter settings in portal
- Yes we can close this ticket. But maybe we should create a follow up ticket for easier defining the subtree? Knowing ...
- 12:53 PM bug #7294 (Closed): keys block can not be disabled in tabless taxon page
- this obviously works now
- 12:36 PM bug #7691 (Closed): Empty "Bibliography" section
- *Nepenthes ampullacea* is now without the empty Bibliography section, so this works now!
- 11:43 AM feature request #7408: [E+M] Support for preferred common names in data portal
- This is soon required for E+M
- 11:33 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
- Needs to be adapted
- 11:28 AM Revision c172618f (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 11:28 AM Revision 9efc1615 (cdm-server): updating poms for branch'release/5.3.0' with non-snapshot versions
- 11:20 AM bug #7085 (New): cdmserver logfiles getting too big, use RollingFileAppender
- 11:19 AM Revision da30015f (cdm-webapp): Merge branch 'release/5.3.0' into develop
- 11:19 AM Revision 8b425a99 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 11:19 AM Revision 4fd4a1fd (cdm-webapp): updating poms for branch'release/5.3.0' with non-snapshot versions
- 11:19 AM Revision 99cdb3ef (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.3.0
- 11:19 AM Revision 05bb4a08 (taxeditor): Merge branch 'release/5.3.0' into develop
- 11:19 AM Revision bd05baf3 (taxeditor): Merge branch 'release/5.3.0'
- 11:18 AM Revision 0367f111 (cdm-vaadin): Merge branch 'release/5.3.0' into develop
- 11:18 AM Revision 0ba46ce4 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 11:14 AM Revision e65d391e (cdm-dataportal): Merge branch 'release/5.3.0' into develop
- 11:14 AM Revision b3cf03c4 (cdm-vaadin): updating poms for branch'release/5.3.0' with non-snapshot versions
- 11:14 AM Revision 954051e2 (cdm-dataportal): updating poms for branch'release/5.3.0' with non-snapshot versions
- 11:14 AM Revision 4c07fd1e (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0
- 11:14 AM Revision 420900d7 (cdm-dataportal): release-preparation: production level css
- 11:14 AM Revision 4402420e (cdmlib): Updating develop poms back to pre merge state
- 11:14 AM Revision b035bb12 (cdmlib): Merge branch 'master' into develop
- 11:14 AM Revision 85e49a21 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 11:14 AM Revision e2e042b7 (cdmlib): Merge branch 'release/5.3.0'
- 11:11 AM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- Andreas Müller wrote:
> Unfortunately the solution is not complete for includeUnpublished = true.
>
> In this cas... - 10:56 AM Revision 4672679d (cdmlib): updating poms for branch'release/5.3.0' with non-snapshot versions
- 10:50 AM Revision 2f2824a5 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.3.0-SNAPSHOT
- 10:50 AM Revision e8a4f976 (cdm-webapp): updating poms for 5.4.0-SNAPSHOT development
- 10:50 AM Revision 023f2279 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.4.0-SNAPSHOT
- 10:50 AM Revision 43803bca (taxeditor): Updated version in pom / project files to taxeditor version : 5.4.0-SNAPSHOT and cdmlib version : 5.4.0-SNAPSHOT
- 10:50 AM Revision 832b8251 (taxeditor): Updated version in pom / project files to taxeditor version : 5.3.0 and cdmlib version : 5.3.0
- 10:48 AM Revision dd6235d4 (cdm-vaadin): jenkins bumping cdmlib.version to 5.3.0-SNAPSHOT
- 10:48 AM Revision 385bbd80 (cdm-vaadin): updating poms for 5.4.0-SNAPSHOT development
- 10:47 AM Revision 3da39777 (cdm-vaadin): jenkins bumping cdmlib.version to 5.4.0-SNAPSHOT
- 10:47 AM Revision 97232390 (cdm-dataportal): updating poms for 5.4.0-SNAPSHOT development
- 10:47 AM Revision 1cfc433b (cdm-server): updating poms for 5.4.0-SNAPSHOT development
- 10:44 AM Revision 29057537 (cdmlib): updating poms for 5.4.0-SNAPSHOT development
- 10:19 AM Revision 9e76e997 (cdmlib): ref #7745 fix failing freetext search in facts freetext search
- 10:18 AM Revision e5dadfea (taxeditor): Merge branch 'develop' into taxonDescription
- 10:14 AM Revision 24134ae2 (cdmlib): ref #7745 fix failing freetext search in facts freetext search
- 10:12 AM Revision 949cae00 (cdmlib): ref #7750 Adapt services to new AssignmentStatus
- 10:03 AM Revision 351ba84b (cdmlib): adding additional testcase for QueryFactory
- 09:54 AM Revision 9ee6e0cd (cdmlib): ref #7745 fix failing freetext search in facts freetext search
- 09:48 AM Revision a15edbb0 (cdm-dataportal): temp. solution to avoid problem with dot characters in freetext search
- 09:39 AM Revision 007bb138 (taxeditor): merge of NameEditorPropertyTester and fix NPE in ConceptContainer for new Taxonrelationships
- 08:55 AM Revision c3f658e9 (cdmlib): Merge branch 'develop' into taxonDecription
- 04:41 AM bug #7764: Fix classification and synonym bug in taxon name freetext search
- The bug introduced by #5890 and the synonym search bug should now be fixed. Please review.
- 04:39 AM bug #7764 (Resolved): Fix classification and synonym bug in taxon name freetext search
- Applied in changeset commit:cdmlib|0c3d038322ffb0292ef44c461391233c20785cec.
- 04:25 AM bug #7764 (Closed): Fix classification and synonym bug in taxon name freetext search
- The bug is described in #5868#note-20 and previous.
* synonym search does not work with classification or subtree ... - 04:39 AM Revision 0c3d0383 (cdmlib): fix #7764 revert incorrect tree parameter in search service and test for incorrect classification uuid
- 04:37 AM Revision 0add62bd (cdmlib): cleanup
- 04:36 AM Revision 38b1c817 (cdmlib): ref #7764 fix failing synonym search with classification or subtree filter
- 01:05 AM Revision e98feeb2 (taxeditor): add English translation for par parte synonym (again after revert)
09/16/2018
- 11:47 PM Revision 4e956294 (taxeditor): Revert "ref #7761: invalid designations are displayed in name editor and details view like MAN"
- This reverts commit 8e0e024c985ffbbe2ce2421270927059c9abf0cc.
- 08:43 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- Andreas Müller wrote:
> OK, on th enew vesion of the cyprus database it works better. Especially the geo-search work... - 07:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- OK, on th enew vesion of the cyprus database it works better. Especially the geo-search works better.
But synonym ... - 02:52 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- The area search has a problem. Searching for "V*" and division1 returns NO result.
Searching for "*".
Searching ... - 02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- was it like this before. Is the sorting by some kind of percentage?
- 02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- The search seems not to be sorted. This is what I get for "V*"
Vitex
Vitis vinifera L.
Vitis
Vulpia brevis Bois... - 02:37 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- For names with multiple whitespaces it is even more tricky.
*wilhelm* returns "Achillea santolinoides subsp. wilhe... - 02:32 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- Wildcards in the same word seem to work. I tested with "*chi*ll*" on test.cyprus.
However, "*chi*ll*san*" to find... - 02:25 PM bug #5868 (Feedback): re-establish support for wildcard at start of query string (includes the query string '*' )
- I get a warning when searching for Achil* on test.cyprus. This is probably not related to this ticket but mention thi...
- 07:20 PM feature request #7658: use new taxon relationship DTO webservice in portal
- And ofcourse the footnotes for non-MAN data are still missing. #7658#note-37 or should this be fixed already? If yes,...
- 07:15 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- 07:15 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Kohlbecker wrote:
> all mentioned bugs fixed!
Tested the 2 issues. Both work.
So the only open issue i... - 05:41 PM feature request #7658: use new taxon relationship DTO webservice in portal
- This problem is not release critical. We can fix it in 5.4. Maybe only moving up ppSyn to top would be nice but if no...
- 05:39 PM feature request #7658: use new taxon relationship DTO webservice in portal
- The sort order is still not correct. We should first have pro parte/partial synonyms, then invalid designations, then...
- 05:37 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- all mentioned bugs fixed!
- 05:08 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Andreas Müller wrote:
> > "auct." (appended phrase) does not show up, e.g.
> >
> > * "... - 05:00 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name... - 03:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name" or "partial Misapplied ...
- 03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> "auct." (appended phrase) does not show up, e.g.
>
> * "Achillea santolina" , non Test ... - 03:27 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- 03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
- "auct." (appended phrase) does not show up, e.g.
* "Achillea santolina" , non Test , but should be "Achillea ... - 05:36 PM Revision 45aaf1fe (cdm-dataportal): depuplication of p.p.MAN and partial MAN with test
- 05:29 PM Revision e56e5d1c (cdm-dataportal): adding test case for no sensu but with Combination Authors and fixing according bug
- 04:50 PM Revision 7400fb33 (cdmlib): allow nom status parsing without name (with ICNAFP as default)
- 04:49 PM Revision 60a3cd56 (cdmlib): ref #7761 add isInvalidDesignation to TaxonRelationshipType
- 04:27 PM Revision 891e2f48 (cdmlib): ref #7761 add isInvalidDesignation to TaxonRelationshipType
- 04:27 PM Revision 47bf9558 (cdmlib): make authenticationManager lazy to avoid circals during start up
- 04:17 PM Revision 26c22583 (taxeditor): add English translation for par parte synonym
- 03:25 PM Revision bafcf277 (cdm-dataportal): adapting xpaths in test framework to modified rendering of footnotes, related to ref #7658
09/15/2018
- 03:15 PM task #7762: E+M: Handle "{non ..." annotations for misapplied names currently handled as appended phrase
- ~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
... - 03:02 PM task #7762 (New): E+M: Handle "{non ..." annotations for misapplied names currently handled as appended phrase
- ... check the names against existing names with exactly same reference and replace name if possible, also remove appe...
- 03:14 PM bug #7763: E+M (post?): Deduplicate "[non ..." blocking names for synonyms
- ~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
... - 03:13 PM bug #7763 (New): E+M (post?): Deduplicate "[non ..." blocking names for synonyms
- These are handled in BerlinModelTaxonRelationshipImport.handleSynonymNotes
About 150 cases, many of them easy to h...
09/14/2018
- 09:33 PM Revision a0557101 (cdm-dataportal): fix #5868 avoiding unneccesary "complex phrase" queries, fixes bug introduced while solving #4223
- 09:31 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- please review
- 09:30 PM bug #5868 (Resolved): re-establish support for wildcard at start of query string (includes the query string '*' )
- Applied in changeset commit:cdmlib|d6bdbc3d4a6d81dd3298913e1a31b64d76b88211.
- 09:30 PM Revision d6bdbc3d (cdmlib): fix #5868 restoring freetext search with leading wildcard and with empty query string, also fixes bug introduced while solving #4223
- 07:05 PM bug #7745 (Resolved): Subtree filter for dataportal services
- 03:16 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Kohlbecker wrote:
> Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs ... - 03:14 PM Revision a9dc4b35 (cdm-dataportal): ref #7658 other relationship reprentation based on DTOs fully implemented
- 03:12 PM Revision 31ab4cf9 (cdm-dataportal): ref #7686 Change label for no type status
- 02:27 PM Revision 7070571d (taxeditor): ref #7761: adapt property tester
- 02:23 PM bug #7686: Specimen title cache issues in data portal specimen table
- The full titleCache is now available and no warning anymore: http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_...
- 01:36 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
- The titleCache issue is fixed.
I do not get the warnings on my local copy of the cyprus data base so I am not able... - 01:59 PM Revision 9657122e (cdmlib): ref #7760 Show name authors for type designations
- 01:45 PM Revision b7299e98 (taxeditor): ref #7761: fragment.xmi and plugin.properties file for invalid designation changes
- 01:43 PM Revision 8e0e024c (taxeditor): ref #7761: invalid designations are displayed in name editor and details view like MAN
- 01:42 PM Revision 619ccb21 (cdmlib): ref #7745 fix failing pathFrom if subtree is null
- 01:39 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
- 01:39 PM Revision 7118b734 (cdmlib): ref #7761: add isInvalidDeisgnation() method to taxon
- 01:37 PM feature request #7761 (Closed): Invalid designations should be displayed like misapplied names in name editor
- The taxon relationship invalid designation should be displayed like MAN and pro parte synonyms in editor.
- 01:34 PM Revision 0b4ac33b (cdm-dataportal): ref #7686 Fix NPE during specimen title generation
- 01:34 PM Revision d961cf30 (cdm-dataportal): ref #7759 adding more subtreefilter url patterns
- 01:24 PM Revision 87bf25dd (cdm-dataportal): ref #7686 Show titleCache as title of specimen page
- 12:28 PM Revision 4518f4b5 (cdmlib): ref #7745 upgrading springfox-swagger2 to circumvent bug related to @RequestMappings
- 11:35 AM bug #7047 (Feedback): Vaadin UI and View scope beans are not always destroyed correctly
- this should also be fixed now that #7742 is solved
- 11:25 AM Revision d1e04696 (cdmlib): cleanup
- 11:24 AM Revision d3dd860c (cdmlib): ref #7745 switch of required in getTaxonNodes
- 11:24 AM Revision 1251ffed (cdmlib): ref #7745 childNodesOf implemented
- 11:15 AM bug #7759: classification subtreefilter settings in portal
- fertig! das filtern im Portal scheint nun zu funktionieren.
- 11:14 AM Revision 6e2a9ba9 (cdm-dataportal): ref #7759 adding more subtreefilter url patterns and commenting redundant patterns
- 11:10 AM Revision 3769d06b (cdmlib): ref #7745 some exception handling for subtree filter
- 10:59 AM Revision fe2906f6 (cdmlib): de-dublicating doGetTaxonNodes() controller methods
- 10:07 AM Revision a8337363 (cdmlib): ref #7745 fixing workaround for override methods
- 09:43 AM Revision 5f218626 (cdmlib): ref #7745 workaround for duplicate TaxonPortalController getTaxonNodes Method
- 09:36 AM Revision a6150f24 (cdmlib): ref #7745 workaround for duplicate TaxonController get Method (for testing if this is the reason) for failing
- 09:24 AM Revision ba0ae53c (cdmlib): ref #7745 workaround for duplicate TaxonController get Method (for testing if this is the reason) for failing
09/13/2018
- 11:08 PM Revision d0df75bd (cdmlib): ref #7745 add subtree filter to missing methods (childNodesOf is still missing implementation)
- 11:05 PM Revision 8616c840 (cdmlib): cleanup
- 05:57 PM bug #7745: Subtree filter for dataportal services
- Also the following webservices need to get a subtree filter:
* /portal/taxon/{uuid}
* /portal/taxon/{uuid}/taxo... - 05:46 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> the query parameter should be the same in all webservice uris: `subtree`
DONE: commit... - 05:43 PM bug #7745: Subtree filter for dataportal services
- the query parameter should be the same in all webservice uris: `subtree`
- 12:38 AM bug #7745: Subtree filter for dataportal services
- Subtree filter is now implemented for (rankSpecific)rootNotes and simple taxon search. API exists also for freetext s...
- 12:36 AM bug #7745 (In Progress): Subtree filter for dataportal services
- 05:45 PM Revision 905f70dc (cdmlib): ref #7745 harmonizing subtree query parameters
- 05:44 PM Revision 9bce681c (cdmlib): ref #7759 additional TaxonNode webservice endpoint and solving logging problems
- 05:37 PM bug #7759 (Resolved): classification subtreefilter settings in portal
- Applied in changeset commit:cdm-dataportal|80d21b78a68c7c45042e9b14b1e628e62cc7c1fc.
- 03:49 PM bug #7759 (Closed): classification subtreefilter settings in portal
- As fist step we need a simple subtreefilter field which takes the UUID of a TaxonNode.
This uuid is to be used as... - 05:37 PM Revision 80d21b78 (cdm-dataportal): fix #7759 implementing classification subtree filtering
- 04:49 PM feature request #7760 (New): Specimen compressed table issues
- **AK** :
hier scheint mir noch einiges offen. V.a. nehme ich Norbert und Tilo mit in cc, weil sie ja für die Requi... - 04:41 PM Revision 25fc25ca (cdm-dataportal): ref #7686 Change label of specimen page link
- 03:46 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- this method is also used for the synonyms, so this is not solved or obsoletd by #7658
- 03:43 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs fehlen noch - kommt in 3.4!
- 03:16 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- 03:12 PM feature request #7658: use new taxon relationship DTO webservice in portal
- please review again
- 03:42 PM Revision 18c71cd1 (cdm-dataportal): ref #7658 using the taxonRelationDTO for other relationshipt also - footnotes are missing
- 03:17 PM task #7758 (New): Manual cleanup after E+M import
- The following tasks should be done manually after final E+M import:
* remaining issues from logfile
* deduplic... - 03:11 PM Revision 23ebb91f (cdm-dataportal): ref #7658 fixing final problems in MAN display related to appendedPhrase, citationDetail, footnotes
- 12:38 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- Unfortunately the solution is not complete for includeUnpublished = true.
In this case you again get an NPE as you... - 12:01 PM Revision dc231846 (cdmlib): fix #7757 first freetext search test working for subtree filter
- 11:38 AM Revision 0f5ab2e8 (cdmlib): cleanup
- 11:37 AM task #7757 (Resolved): Replace deprecated hibernate @Index annotation
- Applied in changeset commit:cdmlib|2b2a66ac3dcc84707a5c5bc631b1eb0241701cf6.
- 11:37 AM task #7757 (Closed): Replace deprecated hibernate @Index annotation
- ... from model classes
- 11:37 AM Revision 2b2a66ac (cdmlib): fix #7757 removed all deprecated hibernate @Index (and @Table) annotations from model
- 10:27 AM Revision 514ee70c (cdmlib): ref #7745 implement treeindex search in freetext search (untested)
- 10:25 AM Revision 1dc8e923 (cdmlib): cleanup
- 10:20 AM Revision 67d89439 (cdmlib): rename AbstractRelationshipEdge.relationshipType to be more generic
- 12:00 AM Revision 8b00105b (cdmlib): ref #7745 add subtree parameter to freetext search methods
09/12/2018
- 11:01 PM Revision d2f1dbf2 (cdmlib): ref #7745 fix bug in queries with subtree, some first test and cleanup
- 09:29 PM bug #7756 (Closed): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- 03:46 PM bug #7756 (Resolved): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- Applied in changeset commit:cdmlib|273b0cdc0b621b1a4314631f83bf9bba9491f9ea.
- 03:45 PM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- the bug was introduced by the commit:e08838f0 for #3560
- 03:44 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
http://api.cybertaxonomy.org/corvidae/portal/taxon/147cb0d4-0f0e-4ba4-a234-e0b55d51677a/subtree/media.json?type=Ima...- 07:28 PM Revision bc3200a9 (cdmlib): ref #7745 fix syntax for node.treeindex in query
- 06:52 PM Revision dce01054 (cdmlib): ref #7745 subtree filter to taxon search (add missing parameter for queries)
- 05:07 PM Revision 603aecbe (cdmlib): ref #7666 doGetTaxonRelationshipsDTO groupMisapplications paramter default = false
- 03:53 PM Revision 26ab7583 (cdmlib): ref #7745 add subtree filter to taxon search (not yet tested for subtree != null)
- 03:47 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Müller wrote:
> We may think about changing to ".../occurrence/uuid" if we want to have a common access po... - 02:20 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as... - 02:05 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as... - 01:28 PM feature request #7755: Implement advanced detail page for occurrences
- i think the specimens page should be extended to also show the fieldUnit data as well as the data on all originals. H...
- 12:12 PM feature request #7755 (New): Implement advanced detail page for occurrences
- we also need a detail page for field units. At the moment we only can display the details of derived units.
implem... - 03:46 PM Revision 273b0cdc (cdmlib): fix #7756 allowig direction to be null again
- 01:37 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Does not yet work for pro parte and partial MANs.
This is also still an open issue. - 01:33 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Deduplication should include appendedPhrase part I think (this is also not yet implemented in the server side misappl...
- 12:55 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Exception for second MAN of Achillea santolinoides Lag.
>
>
> for this data on test.cyp... - 12:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
- The MANs are still unsorted. In the above example you can see that Achillea santolina sensu Chrtek ... is before Achi...
- 12:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
- I tested the above behavior. The reason is that secDetail differs (or misses in one case). secDetail is part of the s...
- 12:32 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- Deduplication still does not work if everything is similar except for sensu and sensu detail. In the following screes...
- 01:29 PM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- is fixed now.
- 12:23 PM feature request #7753 (Feedback): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- ~~"&" is not yet masked and not shown (e.g. as separator for the last member in a team)~~
done - 09:48 AM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- This replaces the implementation #6681
- 01:07 PM feature request #7335 (Closed): Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor
- This is fixed.
- 12:38 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- This can probably be closed either as duplicate or as rejected (we use the TaxonRelationFormatter instead).
Can you ... - 12:37 PM Revision 35f94062 (taxeditor): english label for pro parte synonym added
- 12:25 PM Revision d78360bd (taxeditor): ref #7753: mask &
- 12:10 PM feature request #7599: treeView for specimen data in dataportal
- as long as the detail page for field units is not implemented the link to detail page of field unit is removed.
- 12:08 PM Revision a0f26798 (cdm-dataportal): remove link to detail page for fieldUnits
- 12:02 PM bug #3535 (Closed): Automatically update descriptive view if content changed
- 12:01 PM bug #7754 (New): tab order should be the same after saving of moved descriptions
- copied from #3535:
It would be nice if the tap order of the editors could be the same as before saving. Currently th... - 11:54 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > When creating a species a new Taxon needs to be created for t... - 11:52 AM feature request #7415 (Closed): Implement ExternalLinks for OriginalSources in TaxEditor
- 10:59 AM Revision 19f1d8b4 (cdmlib): ref #7745 add subtree filter also to ClassificationPortalListController
- 10:43 AM Revision c8d2852f (taxeditor): ref #7753: use Formatter in nameEditor for MAN and pro parte synonyms
- 10:33 AM Revision cc1a7529 (cdmlib): ref #7745 fix recursive call in deprecated method
- 09:59 AM Revision 18457b45 (taxeditor): revert use of TaxonRelationshipFormatter in NameEditro
- 09:35 AM Revision 55f79f52 (taxeditor): fix nomenclatural status problems
- 09:31 AM Revision 185155f8 (cdmlib): ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes
- 09:12 AM Revision e54b05e2 (taxeditor): add eu.etaxonomy.cdm.strategy.cache to export packages in cdmlib
- 08:15 AM bug #7752: accepted name context menu blocked after adding first misapplication
- I think this is a duplicate for a known issue since e4.
Patrick, could you please link to the according ticket and...
09/11/2018
- 10:27 PM Revision edeb0e69 (cdmlib-apps): remove Cyprus user import
- 07:05 PM feature request #7599: treeView for specimen data in dataportal
- thank you for fixing the issues so far. Unfortunately there are still some:
1)
on this page the *Locality* shoul... - 12:02 PM feature request #7599: treeView for specimen data in dataportal
- the php problems are solved and the NPE in CollectionDto as well
- 08:23 AM feature request #7599: treeView for specimen data in dataportal
- There are still problems in **tree view** mode, see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datapo...
- 06:40 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- finally fully solved, please review
- 06:39 PM Revision 439f531a (cdm-dataportal): ref #7658 MAN deduplication by full MAN representation except sensu reference
- 06:19 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
- after adding a first misapplication in the name editor the context menu for the accepted name is no longer showing up...
- 05:04 PM feature request #7594 (New): RegistrationWorkingsetEditor click on new serveral times
- 04:58 PM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- 04:56 PM bug #7742: vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- Applied in changeset commit:cdm-vaadin|c6b02b73bf43ef58ae109d89adb17fc4058d46b4.
- 10:35 AM bug #7742 (Resolved): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- Applied in changeset commit:cdm-vaadin|5b7fa02addec342fc2190abc52f66430aefc5533.
- 04:56 PM Revision c6b02b73 (cdm-vaadin): fix #7742 moving inner class SearchFilter into own class file RegistrationSearchFilter
- 04:28 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
- This seems all to be fixed or moved to new ticket.
Only open issue is the tab order which may change by saving (#... - 03:23 PM feature request #7751 (New): Refactor drop down menus to allow empty selection
- Currently we are using the trash can to remove the selection of a drop down. It is more intuitiv to have an empty ele...
- 03:21 PM feature request #7750 (New): Allow multi selection for taxon assignment filter in specimen tree editor
- The following options should be available:
* Individuals Associations
* Type Designation
* Determination
The ... - 03:18 PM feature request #7749 (Rejected): Add "Link with taxon selection" as an icon to the toolbar of the specimen tree editor
- This button should only be active if one or more items are selected.
- 02:58 PM Revision 21cbdd69 (taxeditor): use TaxonRelationshipFormatter for NameEditor
- 02:54 PM Revision dd3ea7ac (cdmlib): ref #7666 replace StringUtils dependency by correct one
- 02:51 PM bug #6742 (Closed): IAE when using "Link with taxon selection" in Specimen-Editor
- This works now.
We discussed to move the menu entry to an icon to make it more intuitive and present for the user... - 02:24 PM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
- This works now and can be closed. Only we could also change the label "External Link Type" to "Type", as this is clea...
- 09:10 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
- I set this ticket to resolved and create a new ticket for the reduced spaces between the fields.
- 02:16 PM feature request #6559 (Closed): Order misapplied names in name editor
- Works fine. It can be discussed if setting the new elements to beginning is expected behavior. But for now we can lea...
- 02:09 PM Revision 013e3b2f (cdmlib): ref #7666 allow formatting without name part (2. test)
- 02:09 PM Revision 51249b12 (cdmlib): cleanup
- 02:03 PM Revision b127d201 (cdmlib): ref #7666 allow formatting without name part
- 01:59 PM Revision 127f0e03 (taxeditor): move mediaToggleButton to the top
- 01:43 PM Revision 3ee27021 (taxeditor): find all occurrences of Misapplikation in german text
- 01:36 PM Revision 82f2be03 (cdm-vaadin): fix #7742 unsubscribing other beans from event bus on dispose()
- 01:18 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- I checked at some places and it looks well. I think if we find places with to long labels we should decide in future ...
- 01:12 PM Revision fba774b1 (cdm-vaadin): fix #7742 unsubscribing from event bus when disposing presenter
- 12:19 PM Revision 7ecaccda (taxeditor): Change default taxon row color
- 11:53 AM Revision 31190572 (taxeditor): minor
- 10:53 AM Revision d6f9e690 (taxeditor): nomenclaturalStatus is created without status type
- 10:35 AM Revision 5b7fa02a (cdm-vaadin): fix #7742 disposing view, presenter and ehcaches when popupviews are closed
- 09:49 AM Revision 106e1cf9 (cdm-dataportal): ref #7599: fix php problems and code cleaning
- 09:11 AM feature request #7747 (New): Enhance display for URI element
- copied from #7415:
Can we reduce the space between the 3 fields? Usually I like this but here I think it is better t... - 08:57 AM Revision 8963d4f9 (cdmlib): avoid NPE when creating CollectionDto
- 08:50 AM Revision 098bc626 (taxeditor): Misapplication should be called Fehlanwendung in german
09/10/2018
- 05:31 PM bug #7686: Specimen title cache issues in data portal specimen table
- On the specimen page still the Class UUID formatting occurs.
Also there are 2 warning now.
Example from test.cy... - 05:27 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
- > Offenbar wird die Zeile “xType of” nur ausgegeben, wenn die Typuskategorie eingegeben wurde? Das ist bei mehrere Sp...
- 05:07 PM bug #7746 (Closed): NPE when deleting volatile DescriptionBase
- In Facts View, when I tried to delete a volatile (not yet persisted) description I got the following exception
~... - 04:29 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> & handling does not yet work correctly in teams. Probably a formatter issue #7666.
>
> ![... - 04:23 PM Revision c331fa7e (cdmlib): ref #7666 fix team formatting (incorrect index of ambersand)
- 02:01 PM Revision 5794ab10 (taxeditor): add empty element in status type combo and sort by idInVocabulary
- 01:50 PM feature request #6559 (Resolved): Order misapplied names in name editor
- now the MAN, pro parte synonyms and invalid designations are sorted by titleCache, new elements are set at the beginn...
- 12:43 PM feature request #6559 (In Progress): Order misapplied names in name editor
- 01:48 PM bug #6742 (Resolved): IAE when using "Link with taxon selection" in Specimen-Editor
- Applied in changeset commit:taxeditor|cb86d7ee94765fcb197a9bd26f896e0a429d09ac.
- 01:48 PM Revision cb86d7ee (taxeditor): fix #6742 Fix Link with taxon selection in specimen tree editor
- 01:47 PM Revision 54cc3ca6 (taxeditor): ref #6559: order misapplied names, pro parte synonyms and invalid designations
- 01:40 PM Revision 653849b4 (cdmlib): ref #6559: get and ordered list of MAN, proparte synonyms and invalid designations
- 11:49 AM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- I disabled wrapping for all detail view elements. Please also click through some other details views. I think this lo...
- 11:47 AM Revision 8a715e5c (taxeditor): ref #7726 Disable wrapping for detail view elements
- 09:07 AM Revision 87e04225 (taxeditor): ref #7674 Adjust to service layer change
- 09:04 AM Revision c4b3991f (cdmlib): ref #7674 Adjust description tag depending on marker type
- 09:04 AM Revision 32b89663 (cdmlib): ref #7674 Move aggregation service method to data set service
- 08:46 AM Revision e0bbe0fa (taxeditor): ref #7674 Add specific style and label for each taxon description type
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