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From 09/09/2018 to 10/08/2018

10/08/2018

03:00 PM task #7420 (Closed): Import for higher taxon graph for phycobank
new ticket for the actual import tasks created: #7811 Andreas Kohlbecker
11:21 AM task #7420: Import for higher taxon graph for phycobank
Ok, can you close the ticket and open a ticket for what ever you stil need? Andreas Müller
11:04 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
I reviewed the imported taxon graph relations. The resulting graph exactly matches the expectations.
The implementat...
Andreas Kohlbecker
08:54 AM task #7420: Import for higher taxon graph for phycobank
all other data import and data cleaning issues are copied to #7808 Andreas Kohlbecker
08:31 AM task #7420: Import for higher taxon graph for phycobank
Andreas Müller wrote:
> You should check by
>
> ~~~ sql
> SELECT titleCache, count(*) as n
> FROM TaxonName tn...
Andreas Kohlbecker
02:59 PM task #7811 (In Progress): Import higher classifications
Andreas Kohlbecker
02:59 PM task #7811 (Resolved): Import higher classifications
The following classifications need to be imported using the import created for #7420
* Frey W. 2015: Syllabus of t...
Andreas Kohlbecker
02:36 PM bug #7777 (Resolved): NPE on login attempt after logout
Applied in changeset commit:cdm-vaadin|3363dabd63329f2f2fd160f5a6c5107ba10a9d2e. Andreas Kohlbecker
01:30 PM feature request #7810 (In Progress): DB preference to make all Specimen functionality/menu items ...
Katja Luther
01:29 PM feature request #7810 (Feedback): DB preference to make all Specimen functionality/menu items inv...
if the preference is set to false everything concerning specimen should be disabled:
* imports
* Specimen Type...
Katja Luther
01:08 PM feature request #7809 (In Progress): Improve namerelationship handling in editor
Katja Luther
01:08 PM feature request #7809 (Feedback): Improve namerelationship handling in editor
copied from #7793:
Namerelationships should be available for both directions in name editor details view.
We sh...
Katja Luther
11:36 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
Andreas Kohlbecker wrote:
> Do you want me to do something about this issue? I think my task was the according imple...
Andreas Müller
08:23 AM feature request #3990 (Feedback): [DISCUSS] How to implement citation suggestion to each taxon
Do you want me to do something about this issue? I think my task was the according implementation in the data-portal. Andreas Kohlbecker
07:57 AM bug #7807 (New): Multiple mobile Usability issues
The new google webmasters console reports multiple mobile Usability issues:
* Text too small to read
* Viewport n...
Andreas Kohlbecker

10/05/2018

06:34 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
implementation complete! Andreas Kohlbecker
12:32 PM bug #3276 (Closed): NPE for "Move Elements" context menu option
works fine Patrick Plitzner
10:14 AM bug #3276: NPE for "Move Elements" context menu option
The NPE I could not reproduce. The menu entry for move factual data is displayed only for descritions, now.
Why the...
Katja Luther
09:17 AM bug #3276 (Feedback): NPE for "Move Elements" context menu option
I could not reproduce this exception how described above but there is another one.
Now there is also the context m...
Patrick Plitzner
12:28 PM feature request #7502 (Resolved): Add further columns to bulk editor
I implemented all of the mentioned properties as columns.
Please check all types of bulk editors.
Patrick Plitzner
08:43 AM feature request #7806 (Resolved): GfBio Term Search issues
Patrick Plitzner

10/04/2018

09:53 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
"Session is closed!"-problem is solved now. Andreas Kohlbecker
05:44 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
There is a problem when running the test in the maven test suite. The `TaxonGraphHibernateListenerTest` fails when it... Andreas Kohlbecker
07:54 PM bug #6303 (Closed): distribution map is moving too fast
Andreas Müller
03:31 PM bug #6303 (Worksforme): distribution map is moving too fast
Works for me, thanks! Gabriele Dröge
02:23 PM feature request #7438: implement citation suggestion in dataportal
done! the E+M portal is already configured accordingly
Andreas Kohlbecker
02:17 PM feature request #7438 (Resolved): implement citation suggestion in dataportal
Applied in changeset commit:cdm-dataportal|1cda248cd9db631b3fd3b34c519f85a820283514. Andreas Kohlbecker
11:34 AM feature request #7806 (Closed): GfBio Term Search issues
* Only use "search" endpoint
* Use interal_only flag
* Allow wildcard (*) search
* Move ontology abbreviation to t...
Patrick Plitzner
11:29 AM feature request #7805 (Duplicate): GfBio Term Search issues
* use only "search" endpoint and not the "suggest" endpoint
* use "interal_only" ontologies
* Allow '*' wildcard se...
Patrick Plitzner
09:45 AM feature request #7660 (Resolved): Indicate the row state in a NAT table via symbols
Applied in changeset commit:taxeditor|1f677abd3ea026eab1835f317828d8be5ad6bd65. Patrick Plitzner

10/03/2018

12:32 PM feature request #7804 (New): add names of concept relationships as mouse over to synonymy tab
It is hard to remember meanings of all signs of the concept relations. Would be of great help if the name of the rela... Gabriele Dröge

10/02/2018

06:20 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names...
please review commit:335d7c23
especially
* `PreferencePredicate.TaxonGraphSecRefUuid` predicate ok?
* `Cdm...
Andreas Kohlbecker
06:05 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
All names imported only by occurrences: (n=1435)
~~~ sql
SELECT n.nameId, n.nameCache, n.FullNameCache, n.uuid,...
Andreas Müller
08:51 AM feature request #7803 (New): Add possibility to change feature of a fact
It should be possible to change the feature of a fact.
This could be done by drag & drop into another group of facts...
Katja Luther

10/01/2018

05:31 PM bug #7676 (Closed): Suchfunktionalität in Registration UI Dateneingabe
Das war ein Problem mit der Verwechslung von TestProduktions und Test-System, guter Hinweis. Ticket geschlossen. Wolf-Henning Kusber
05:25 PM feature request #7802 (Duplicate): Portal-Info when an http-identifier "in preparation" is requested
Ein heikeler Punkt ist, dass im editorial process, spätestens beim Proof-Reading Gutachter*innen oder Herausgeber*inn... Wolf-Henning Kusber

09/29/2018

06:14 PM task #7798 (In Progress): [AM, ERS]: Import (freetext) nameInSource correctly
Andreas Müller
04:35 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
In einer nicht ganz kleinen Anzahl Fälle, für die der Name NUR als Freitext vorliegt, nicht als Link, wurde ein entsp... Andreas Müller
03:39 PM task #7798: [AM, ERS]: Import (freetext) nameInSource correctly
im Berlin Model gibt es ja 2 Felder in die man den Namen, der in der Quelle für eine Verbreitungsangabe verwendet wur... Andreas Müller
11:40 AM task #7798 (Resolved): [AM, ERS]: Import (freetext) nameInSource correctly
For occurrence sources and maybe also for common names and facts.
Occurrences:
1. case: freetext exists parall...
Andreas Müller
12:32 PM feature request #7801 (In Progress): AM: Deduplicate references
Many references are duplicates. We could try to deduplicate them during import.
TODO:
* check for parameters l...
Andreas Müller
12:30 PM feature request #7800 (In Progress): Parse preliminary RefDetails
There are >40000 RefDetails imported as the are preliminary. We could try to parse them during import. Andreas Müller
12:04 PM feature request #7799 (Resolved): AM: Parse authorteams
many of them are single persons and also the resulting persons/teams could be parsed probably Andreas Müller

09/28/2018

01:26 AM task #7369: Handle taxonomically valueless taxa correctly
ERS (2015-08-15):
zum Thema Rubus lässt sich sagen:
die 19 Taxa, die im Baum direkt unter Plantae included sind...
Andreas Müller
01:20 AM task #7796: [CHECK] Handle Bibliography Name Facts correctly
ERS: (2014-11-08)
diese Angaben in eckigen Klammern hinter der eigentlichen nom.ref. stammen aus dem ILDIS-Import....
Andreas Müller
08:18 PM task #7796: [CHECK] Handle Bibliography Name Facts correctly
~~~ sql
SELECT n.NameCache, n.FullNameCache, n.NomRefFk, pt.PTRefFk, fact.NameFactId, fact.PTNameFk, fact.NameFact, ...
Andreas Müller
08:01 PM task #7796 (Resolved): [CHECK] Handle Bibliography Name Facts correctly
There are 13568 name facts of type "Bibliography" (Cat=3).
These are currently attached to the according names as ...
Andreas Müller
12:48 AM task #7435: Handle also published in correctly
We keep it as a name fact for now. Andreas Müller
12:47 AM task #7435 (In Progress): Handle also published in correctly
Only the remaining 2 comments need to be handled by ERS (see mail). Maybe also some name notes in CDM.
The issue ...
Andreas Müller
08:51 PM task #7435: Handle also published in correctly
... achso, und es gibt auch noch einige, die nicht mit „&“ oder „=“ oder „or“ anfangen, wie die meisten anderen. Ist ... Andreas Müller
12:41 AM feature request #7797: Second nomenclatural reference
ein Einzelfall:
Reynoutria sachalinensis (F. Schmidt) Nakai (7300000): hier steht in den Detail notes
„in T. Mor...
Andreas Müller
12:14 AM feature request #7797: Second nomenclatural reference
Auräumen von E+M:
Daher einige Fragen:
* Können wir bei denen mit Klammern und & die Klammer und das & löschen?...
Andreas Müller
11:48 PM feature request #7797 (New): Second nomenclatural reference
In E+M and other databases second or even more nomenclatural references exist or are required.
This is currently h...
Andreas Müller
11:57 PM bug #7456 (Duplicate): E+M: NameFacts von ILDIS Daten
Duplicates #7435, #7437 and #7796 Andreas Müller
06:41 PM feature request #7345: [E+M] Common name references selectable in TaxEditor
now the selection dialog searches only for references with marker of markerType commonNameReference and when creating... Katja Luther
06:15 PM feature request #7440 (Resolved): E+M mark common name reference with according marker
The markers were imported Andreas Müller
04:18 PM feature request #6554: The details views are newly created with every change of the focus
The count cache might be also something for the data portals Andreas Müller
04:17 PM feature request #6554: The details views are newly created with every change of the focus
Patrick Plitzner wrote:
> Another bottleneck is
>
> ~~~
> org.hibernate.collection.internal.PersistentSet.size(...
Andreas Müller
02:45 PM feature request #6554: The details views are newly created with every change of the focus
Another bottleneck is
~~~
org.hibernate.collection.internal.PersistentSet.size()
org.hibernate.collection.inter...
Patrick Plitzner
11:20 AM task #7795: untilis xml DataSets creation without "[NULL]" values
now that we can create datasets without "[NULL]"s we can clean up the test datasets if needed.
If you don't feel lik...
Andreas Kohlbecker
11:14 AM task #7795 (Resolved): untilis xml DataSets creation without "[NULL]" values
Applied in changeset commit:cdmlib|a400c76fcbbe92ca47c01798c378a44bf73a3e4d. Andreas Kohlbecker
11:13 AM task #7795 (Closed): untilis xml DataSets creation without "[NULL]" values
After upgrading to Unitils 3.x it was needed to add "[NULL]" values to the attributed in the xml datasets since the `... Andreas Kohlbecker

09/27/2018

03:47 PM task #7455: [Check] Check all markers for correctnes
The publish flag (=false) is related to distributions with no status in BM. This is handled now in #2764 and #4822 Andreas Müller
03:44 PM feature request #7063: Improve the area selection wizard for distribution editor
now the admin can define the vocabulary and in the distribution editor itself the shown areas can be defined.
Katja Luther
03:05 PM task #7420: Import for higher taxon graph for phycobank
You should check by
~~~ sql
SELECT titleCache, count(*) as n
FROM TaxonName tn
GROUP BY tn.titleCache
Having ...
Andreas Müller
02:59 PM task #7420 (Resolved): Import for higher taxon graph for phycobank
I did run a new import to test.cdm_phycobank. Please check the results.
One issue I can see is that the existing I...
Andreas Müller
02:24 PM task #7420: Import for higher taxon graph for phycobank
Andreas Kohlbecker wrote:
> Hi Andreas,
>
> a small change of the strategy: All Taxa and TaxonRelations which bel...
Andreas Müller
12:17 PM bug #7794 (Closed): Update TaxonNodeWizard
The taxonnode wizard needs to be updated, the taxon, parent and classification should not be editable and the "open i... Katja Luther
11:20 AM feature request #7793 (Feedback): Master ticket for E+M editor issues
Following issues should be solved for E+M migration:
Perspectives:
* start perspective with reduced number of w...
Katja Luther

09/26/2018

05:43 PM task #7420: Import for higher taxon graph for phycobank
Hi Andreas,
a small change of the strategy: All Taxa and TaxonRelations which belong to the classifications-graph ...
Andreas Kohlbecker
11:35 AM feature request #6554 (In Progress): The details views are newly created with every change of the...
Patrick Plitzner
11:34 AM feature request #6554: The details views are newly created with every change of the focus
The performance loss is separated in two areas:
1. SWT/UI rendering
* can be optimized by caching the UI widgets...
Patrick Plitzner

09/25/2018

01:49 PM bug #7792 (Resolved): Rendering of context menu of factual data view is super slow
Applied in changeset commit:taxeditor|2a6e2626fddd5f6637955f7f7479468c03767929. Patrick Plitzner
01:48 PM bug #7792 (Closed): Rendering of context menu of factual data view is super slow
Patrick Plitzner
12:31 PM feature request #7791 (Resolved): Visualize the phycobank higher taxon graph

Visualization as a layered graph which allows to explore the graph interactively
Current concept:
* potenti...
Andreas Kohlbecker
11:09 AM bug #7447: ERS: Fix misapplied name issues for E+M common names.
AM:
...
Lediglich für den letzten Fall „Hieracium glaucinum subsp. glaucinum“ bräuchte ich noch Feedback von di...
Andreas Müller
11:07 AM feature request #7788 (In Progress): Registration page shows registration date and office
Andreas Kohlbecker
09:59 AM bug #7783 (Resolved): NamePopupEditor new buttons for genus and species
completed now, please review Andreas Kohlbecker
09:58 AM bug #7630 (Resolved): blocking registration relations get lost after saving adding a typedesignat...
fixed, please review Andreas Kohlbecker
09:30 AM task #7346 (In Progress): [CHECK] Use separate area vocabulary for common names
Andreas Müller

09/24/2018

03:30 PM feature request #7790 (New): [DISCUSS] E+M: Language-Area Mapping
E+M in BM allows a mapping for all languages to the available area (or the other way round - need to check in BM edit... Andreas Müller
03:04 PM task #7789: redirect URIs referencing Drupal nodes to lowercase URI
This could be implemented by adding an according redirect rule to the Drupal `.htaccess` file with the following dire... Andreas Kohlbecker
02:59 PM task #7789 (New): redirect URIs referencing Drupal nodes to lowercase URI
Ich habe mich also nochmals eingehender mit diesem Thema beschäftigt:

Nach dem was in https://stackoverflow.com/q...
Andreas Kohlbecker
02:48 PM bug #7745: Subtree filter for dataportal services
For the polytomous keys the following webservices need to be filtered by the subTree to avoid unpublished taxa showin... Andreas Kohlbecker
02:48 PM bug #7745: Subtree filter for dataportal services
Andreas Müller wrote:
> So can we close the ticket?
You were too fast ;-)
Andreas Kohlbecker
02:44 PM bug #7745: Subtree filter for dataportal services
So can we close the ticket? Andreas Müller
02:33 PM bug #7745: Subtree filter for dataportal services
To the issues 1) - 3) reported in #7745#note-17:
1) You are right, this web service behaves ok.
2) I reported t...
Andreas Kohlbecker
12:29 PM feature request #7502 (In Progress): Add further columns to bulk editor
Patrick Plitzner wrote:
> @Andreas: Please review the first implementation of this for id and uuid
Looks ok.
...
Andreas Müller
11:51 AM feature request #7775 (Resolved): Factual Data label issue
Applied in changeset commit:cdmlib|3c0cadbbcdb4d44a395a6ab3131090ef811eac3f. Patrick Plitzner
11:45 AM feature request #7788 (Closed): Registration page shows registration date and office
Registration page needs to show the registration date and office Andreas Kohlbecker
08:08 AM bug #7787: default occurrence view shows media also in expanded state
Vielleicht sollte man das per java-script machen, das Bild ist auf der Seite schon vorhanden und müsste nur an eine a... Andreas Kohlbecker
08:08 AM bug #7787: default occurrence view shows media also in expanded state
[Katja]:
ich hatte mir das ja auch mal angesehen und soweit ich das verstanden habe, sind die Bilder sozusagen die...
Andreas Kohlbecker
08:07 AM bug #7787 (New): default occurrence view shows media also in expanded state
Bilder werden nur im collapsten Zustand angezeigt werden, expanded kann man sie nicht sehen.
![](picture982-1.pn...
Andreas Kohlbecker

09/22/2018

02:22 PM feature request #7440 (In Progress): E+M mark common name reference with according marker
Done. Still needs to be tested. Andreas Müller
02:20 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
Applied in changeset commit:cdmlib-apps|59d588d3618128a6980f1d9bbf10e840f23e049c. Andreas Müller
01:24 PM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be r...
~~~
SELECT DISTINCT SourceNumber2Ref.*, r.*
FROM SourceNumber2Ref INNER JOIN
Reference r ON SourceNumber2Re...
Andreas Müller
08:26 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be r...
bei den OccurrenceSources sind ein paar kaputt gegangen, vermutlich weil die Identifier hier nicht als Zahlen sondern... Andreas Müller
08:25 AM bug #7786: ERS: Try to solve those occurrence sources for which the reference number can not be r...
irgendwas ist auch noch seltsam bei folgenden Taxa:
Juncus acutiflorus Hoffm.
Juncus acutus L.
Juncus anceps Lah...
Andreas Müller

09/21/2018

05:36 PM bug #7786 (In Progress): ERS: Try to solve those occurrence sources for which the reference numbe...
Andreas Müller
05:35 PM bug #7786 (Resolved): ERS: Try to solve those occurrence sources for which the reference number c...
Some of them only have a trailing whitespace problem and can be found by
~~~
SELECT *
FROM emOccurrenceSource
...
Andreas Müller
04:33 PM task #7785: CdmUserHelper caches permission information
Can the cache of the presenter be used in the CdmUserHelper to avoid loading the entities again? Andreas Kohlbecker
04:25 PM task #7785 (Closed): CdmUserHelper caches permission information
CdmUserHelper has been identified being hostspot in the cpu time analysis:
![](picture159-1.png)
Caching entit...
Andreas Kohlbecker
03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
Andreas Kohlbecker
03:45 PM task #7784 (Resolved): deduplicate and harmonize ClassificationController methods
Applied in changeset commit:cdmlib|c3be000f7a4dee3e84481b0d1a020109cdf9ad59. Andreas Kohlbecker
03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
* ClassificationPortalController needs to be a subclass of ClassificationController
* duplicate and deprecated metho...
Andreas Kohlbecker
01:25 PM bug #7783 (Closed): NamePopupEditor new buttons for genus and species
For species the genus can only be selected from existing genera. In order to use a not existing genus it is currently... Andreas Kohlbecker
01:17 PM feature request #7782 (New): for a new synonym it should be possible to change it to missaplied n...
As comfortable way to create a MAN it would be good that changeToMisappliedName can be done for not persisted synonym... Katja Luther
01:10 PM bug #7424: right click menu does not show up in name editor
the problem appears because the menu is set to disposed when a groupContainer is removed. Katja Luther
01:01 PM feature request #7594 (Closed): RegistrationWorkingsetEditor click on new serveral times
problem solved, please review. Andreas Kohlbecker
01:00 PM feature request #7594 (Resolved): RegistrationWorkingsetEditor click on new serveral times
Applied in changeset commit:cdm-vaadin|edce7749ded3f3f7f3860106f45235532afe09a2. Andreas Kohlbecker
11:45 AM bug #7187: ReferenceEditor: saving with DOI casues exception
bitte review Andreas Kohlbecker
11:44 AM feature request #3234 (Closed): implement cdm service method to collect SpecimensAndObservations ...
Andreas Kohlbecker
11:42 AM bug #7723 (Resolved): PhycoBank unpublished data must not be visible in Portal
Issue fixed, only PUBLISHED registrations are visible now, please review. Andreas Kohlbecker
10:40 AM bug #7781 (New): original spelling is missing for accepted taxon in taxon page
Hallo,
im Portal wird das “as ....“ nicht angezeigt
Beispiel:
![](picture440-1.png)
http://caryophyllale...
Andreas Kohlbecker
09:37 AM feature request #7780 (New): improve order of nomenclatural status types
the order of nomenclatural status type should represent the importance of the type. Types used often, should be at th... Katja Luther
08:50 AM bug #7779 (Closed): swagger UI broken after springfox-swagger2 upgrade
after upgrading springfox-swagger2 to version 2.6.1 (commit:4518f4b) the swagger UI is broken.
Presumably an upgrad...
Andreas Kohlbecker

09/20/2018

12:10 AM bug #7449 (Resolved): E+M: Import common names with no regionFk correctly
The empty ones are all common names for ILDIS taxa:
~~~
SELECT n.FullNameCache, n.NameCache, cn.*
FROM emCommonN...
Andreas Müller
11:44 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
Ticket is fixed. Remaining issue is a data issue. Needs to be fixed by ERS. Andreas Müller
11:43 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
der Import für die postulated … ist fertig. Es gibt ein paar Fälle, bei denen die Namen nicht kursiv gesetzt sind. We... Andreas Müller
03:57 PM feature request #7769 (In Progress): E+M: Handle postulated parental species as taxon extensions
Andreas Müller
11:39 PM bug #7424: right click menu does not show up in name editor
Add this to current milestone as it is critical (often mentioned by users) Andreas Müller
03:58 PM task #7455 (In Progress): [Check] Check all markers for correctnes
Andreas Müller
01:56 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
Andreas Kohlbecker
01:56 PM bug #7778 (Resolved): identifier links missing in taxon relations footnotes
Applied in changeset commit:cdm-dataportal|c714960cc180ca547c9a9ddb25776c48e06f6141. Andreas Kohlbecker
12:12 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
identifier links missing when a footnote is created for taxon relations
see e.g.: http://caryophyllales.org/nepe...
Andreas Kohlbecker
12:27 PM bug #3276: NPE for "Move Elements" context menu option
please review Katja Luther
12:26 PM bug #3276 (Resolved): NPE for "Move Elements" context menu option
Applied in changeset commit:taxeditor|90f49fe41d5816b7fce308a5200a950550758e1e. Katja Luther
11:27 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
Katja Luther
11:27 AM bug #7773 (Closed): when changing rank the hybrid section is empty
please review Katja Luther
11:25 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
Applied in changeset commit:taxeditor|2e765343e89b57f860f7661ad06385608b991d94. Katja Luther
11:26 AM feature request #2444 (Resolved): Disable binom and trinom hybrid flag when epithets are not avai...
the problem of disappearing hybrid section is solved, so we can close this ticket as well.
please review
Katja Luther
11:14 AM bug #7777 (Closed): NPE on login attempt after logout
login attempt after logging out
~~~
Caused by: java.lang.NullPointerException
at eu.etaxonomy.cdm.vaadin.view.L...
Andreas Kohlbecker
09:41 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions adde...
Applied in changeset commit:cdmlib|74ab8c12e9283ca97969609df026ec62708aa9f5. Patrick Plitzner
08:12 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions adde...
If a SpecimenDescription is added to the descriptive data set the source of the data set should be copied to the spec... Patrick Plitzner
08:44 AM feature request #7599: treeView for specimen data in dataportal
Andreas Kohlbecker wrote:
> 2)
>
> diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc...
Andreas Kohlbecker
08:10 AM feature request #7775 (Closed): Factual Data label issue
* ~~change context menu entry for creation of a new description to "New Factual Data Set"~~
* ~~add alternative for ...
Patrick Plitzner
07:54 AM feature request #7774 (New): Show description source for description elements
In the details view the list of sources of description elements should contain the source of the description but it s... Patrick Plitzner

09/19/2018

04:24 PM feature request #7502 (Feedback): Add further columns to bulk editor
@Andreas: Please review the first implementation of this for id and uuid Patrick Plitzner
04:18 PM feature request #2444 (In Progress): Disable binom and trinom hybrid flag when epithets are not a...
this is implemented now, but there is still a bug see #7773 Katja Luther
04:12 PM bug #7773 (Closed): when changing rank the hybrid section is empty
When changing the rank the hybrid section is updated, but after this the section is empty. Resize or close and open t... Katja Luther
03:14 PM task #2406: DeterminationEventElement is lacking references
Now, you can select the determination event to edit its supplemental data.
However, it is not possible anymore to se...
Patrick Plitzner
03:07 PM task #2406 (Resolved): DeterminationEventElement is lacking references
Applied in changeset commit:taxeditor|097d348b1b100faae233b8574a4a090de48fdbdd. Patrick Plitzner
02:27 PM feature request #7674 (Resolved): Show taxon descriptions in character matrix editor
Patrick Plitzner
02:16 PM bug #7772: Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
also rename attribute "term_id" Andreas Müller
02:15 PM bug #7772 (Closed): Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
to be consistent. If other TermBase classes are relevant they need an own table anyway, similar to the handling of (d... Andreas Müller
02:00 PM feature request #7771 (New): Format Misapplication search results as MAN, not as accepted taxa
If a search result contains a misapplication only as a taxon related to an accepted taxon in the search filter it sho... Andreas Müller
10:41 AM bug #7424 (In Progress): right click menu does not show up in name editor
this problem appears only for synonyms and the accepted taxon, for missapplied names and pro parte synonyms the menu ... Katja Luther
10:15 AM bug #7541 (In Progress): Insufficient rights lead to missing focus in name editor
Katja Luther
10:14 AM bug #7541: Insufficient rights lead to missing focus in name editor
the missing possibility to set the focus on the name editor was because of a wrong permission check. Katja Luther

09/18/2018

03:37 PM feature request #7770 (New): E+M: Handle extensions like "postulated parental species" in data po...
for details see #7769.
Postulated parental species are now implemented as TaxonBase Extensions of ExtensionType "p...
Andreas Müller
03:28 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
Postulated parental species are Name.Notes in BM. They should become Extensions of respective type, to be shown behin... Andreas Müller
01:57 PM feature request #4129: Allow filtering by OriginalSourceType
KL an ERS:
parallel zu den Import Issues für Euro+Med arbeiten wir auch die Editor Tickets ab, die Euro+Med betref...
Andreas Müller
12:48 PM feature request #7283: Improvements for alternative identifier search
~~In search result the alternative identifier and the titlecache of the reference should be displayed (behind titleCa... Katja Luther
12:43 PM feature request #7283 (In Progress): Improvements for alternative identifier search
Katja Luther
11:36 AM feature request #7345 (Resolved): [E+M] Common name references selectable in TaxEditor
added a new markerType 'common name reference' and everytime a reference is added as source reference a marker of thi... Katja Luther

09/17/2018

10:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
I will try to write tests for the remaining issues and move them to a new ticket. Andreas Müller
04:42 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
I moved synonym search and classification/subtree filters to new ticket #7764 as it is not really related to the topi... Andreas Müller
03:22 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The classification filter does NOT have any effect in the webservice (1). But it has in the service(2)!
I tested (...
Andreas Müller
10:03 PM bug #7745 (Resolved): Subtree filter for dataportal services
By the way there might be not implemented webservices that need to be protected, e.g. for PolytomousKeys. I think the... Andreas Müller
10:02 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
> 3) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/7114...
Andreas Müller
09:57 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
>
> 2) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/...
Andreas Müller
04:53 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> Open issues:
>
> tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uui...
Andreas Müller
02:59 PM bug #7745 (Feedback): Subtree filter for dataportal services
Open issues:
tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uuid=0ad45274-c5cf-4a95-aa1b-dc698e7...
Andreas Kohlbecker
01:33 PM bug #7745 (Resolved): Subtree filter for dataportal services
Can you please do the final review and close if everything works as expected (but we will probably get user feedback ... Andreas Müller
09:01 AM bug #7745 (Feedback): Subtree filter for dataportal services
Have to reopen. Freetext search on context does not yet work as expected. Searching for "All" returns no result with ... Andreas Müller
08:48 AM bug #7745 (Closed): Subtree filter for dataportal services
From all what I tested it works. I never got an "external" taxon. Andreas Müller
08:01 PM feature request #7720: use new taxonRelationshipsDTO webservice for all taxon relations
Remaining issues handled in #7766 Andreas Müller
07:52 PM feature request #7720 (Resolved): use new taxonRelationshipsDTO webservice for all taxon relations
I think this was already done in 5.3. Maybe we can close **this** ticket as duplicate as #7658 includes by title all ... Andreas Müller
08:00 PM feature request #7658 (Closed): use new taxon relationship DTO webservice in portal
Close this ticket. Remaining (and new) issues moved to #7766 Andreas Müller
04:33 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
duplicates #7767 Andreas Müller
04:32 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
Andreas Kohlbecker
04:32 PM bug #7767 (Resolved): Incorrect handling of secundum detail reference in formatter
Applied in changeset commit:cdmlib|0ef1a15ed1a417160deec0b112f36a12de7363dc. Andreas Müller
04:29 PM bug #7767 (Closed): Incorrect handling of secundum detail reference in formatter
The sec detail is formatted as TagEnum.secundum not TagEnum.secMicroRef. This results in strange behavior on data por... Andreas Müller
03:57 PM bug #7656 (Duplicate): Adapt inverse symbol for MisappliedName relationship type
Andreas Müller
03:56 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
AM an WGB:
die MANs sollten jetzt auch sichtbar sein und hoffentlich besser formatiert. Ein Problem ist noch, welc...
Andreas Müller
12:33 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
... and don't forget to adapt csv files. Andreas Müller
12:32 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
... and for pp Synonyms
~~~
UPDATE DefinedTermBase
SET symbol='⊃p.p.' , inverseSymbol = 'p.p.'
WHERE uuid= '8...
Andreas Müller
12:17 PM bug #7514 (In Progress): Change direct and inverse symbol for pro parte synonym and misapplied na...
Critical because in use already Andreas Müller
12:17 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationshi...
For misapplied names (we may think about using a larger dash, also maybe change idInVocabulary)
~~~
UPDATE Define...
Andreas Müller
03:27 PM bug #7766 (Resolved): Remaining issues for using relationship DTO webservice in portal
for details see #7658
* taxonrelation footnotes missing (see #7658#note-51 for details)
* sort order of the rel...
Andreas Kohlbecker
03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker wrote:
> The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are no...
Andreas Kohlbecker
01:44 PM bug #7047 (In Progress): Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker
01:44 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are not destroyed correctly. At lea... Andreas Kohlbecker
11:39 AM bug #7047 (Resolved): Vaadin UI and View scope beans are not always destroyed correctly
Andreas Kohlbecker
02:22 PM task #7757 (Closed): Replace deprecated hibernate @Index annotation
The creation of a new database works as expected, the creation of the index works without exception and the search wo... Katja Luther
01:28 PM task #7757: Replace deprecated hibernate @Index annotation
Please review, e.g. by creating a new database with the new code and compare if all table names and indexes work simi... Andreas Müller
02:14 PM bug #7638 (Resolved): problem with media data missing meta data
Andreas Müller
01:50 PM feature request #7644 (Closed): Add "continued" flag to (Verbatim)Timeperiod
Andreas Kohlbecker
01:23 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
The code changes look ok. Andreas Kohlbecker
01:42 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
There is still a comma missing beetween the types if there are >1 types. Andreas Müller
01:30 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
We should think about throwing an exception in the moment when the cacher is used incorrectly (e.g. for volatile obje... Andreas Müller
01:25 PM feature request #7765 (New): Advanced UI to define the subtree filter in data portal
Follow up from #7759 Andreas Müller
01:23 PM bug #7759 (Closed): classification subtreefilter settings in portal
Yes we can close this ticket. But maybe we should create a follow up ticket for easier defining the subtree? Knowing ... Andreas Müller
12:53 PM bug #7294 (Closed): keys block can not be disabled in tabless taxon page
this obviously works now Andreas Kohlbecker
12:36 PM bug #7691 (Closed): Empty "Bibliography" section
*Nepenthes ampullacea* is now without the empty Bibliography section, so this works now! Andreas Kohlbecker
11:43 AM feature request #7408: [E+M] Support for preferred common names in data portal
This is soon required for E+M Andreas Müller
11:33 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
Needs to be adapted Andreas Müller
11:20 AM bug #7085 (New): cdmserver logfiles getting too big, use DailyRollingFileAppender
Andreas Kohlbecker
11:11 AM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice rela...
Andreas Müller wrote:
> Unfortunately the solution is not complete for includeUnpublished = true.
>
> In this cas...
Andreas Kohlbecker
04:41 AM bug #7764: Fix classification and synonym bug in taxon name freetext search
The bug introduced by #5890 and the synonym search bug should now be fixed. Please review. Andreas Müller
04:39 AM bug #7764 (Resolved): Fix classification and synonym bug in taxon name freetext search
Applied in changeset commit:cdmlib|0c3d038322ffb0292ef44c461391233c20785cec. Andreas Müller
04:25 AM bug #7764 (Resolved): Fix classification and synonym bug in taxon name freetext search
The bug is described in #5868#note-20 and previous.
* synonym search does not work with classification or subtree ...
Andreas Müller

09/16/2018

08:43 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
Andreas Müller wrote:
> OK, on th enew vesion of the cyprus database it works better. Especially the geo-search work...
Andreas Müller
07:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
OK, on th enew vesion of the cyprus database it works better. Especially the geo-search works better.
But synonym ...
Andreas Müller
02:52 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The area search has a problem. Searching for "V*" and division1 returns NO result.
Searching for "*".
Searching ...
Andreas Müller
02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
was it like this before. Is the sorting by some kind of percentage? Andreas Müller
02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
The search seems not to be sorted. This is what I get for "V*"
Vitex
Vitis vinifera L.
Vitis
Vulpia brevis Bois...
Andreas Müller
02:37 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
For names with multiple whitespaces it is even more tricky.
*wilhelm* returns "Achillea santolinoides subsp. wilhe...
Andreas Müller
02:32 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
Wildcards in the same word seem to work. I tested with "*chi*ll*" on test.cyprus.
However, "*chi*ll*san*" to find...
Andreas Müller
02:25 PM bug #5868 (Feedback): re-establish support for wildcard at start of query string (includes the qu...
I get a warning when searching for Achil* on test.cyprus. This is probably not related to this ticket but mention thi... Andreas Müller
07:20 PM feature request #7658: use new taxon relationship DTO webservice in portal
And ofcourse the footnotes for non-MAN data are still missing. #7658#note-37 or should this be fixed already? If yes,... Andreas Müller
07:15 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Andreas Müller
07:15 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Kohlbecker wrote:
> all mentioned bugs fixed!
Tested the 2 issues. Both work.
So the only open issue i...
Andreas Müller
05:41 PM feature request #7658: use new taxon relationship DTO webservice in portal
This problem is not release critical. We can fix it in 5.4. Maybe only moving up ppSyn to top would be nice but if no... Andreas Müller
05:39 PM feature request #7658: use new taxon relationship DTO webservice in portal
The sort order is still not correct. We should first have pro parte/partial synonyms, then invalid designations, then... Andreas Müller
05:37 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
all mentioned bugs fixed! Andreas Kohlbecker
05:08 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Andreas Müller wrote:
> > "auct." (appended phrase) does not show up, e.g.
> >
> > * "...
Andreas Kohlbecker
05:00 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name...
Andreas Kohlbecker
03:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name" or "partial Misapplied ... Andreas Müller
03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> "auct." (appended phrase) does not show up, e.g.
>
> * "Achillea santolina" , non Test ...
Andreas Müller
03:27 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Andreas Müller
03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
"auct." (appended phrase) does not show up, e.g.
* "Achillea santolina" , non Test , but should be "Achillea ...
Andreas Müller

09/15/2018

03:15 PM task #7762: E+M: Handle "{non ..." annotations for misapplied names currently handled as appended...
~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
...
Andreas Müller
03:02 PM task #7762 (New): E+M: Handle "{non ..." annotations for misapplied names currently handled as ap...
... check the names against existing names with exactly same reference and replace name if possible, also remove appe... Andreas Müller
03:14 PM bug #7763: E+M (post?): Deduplicate "[non ..." blocking names for synonyms
~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
...
Andreas Müller
03:13 PM bug #7763 (New): E+M (post?): Deduplicate "[non ..." blocking names for synonyms
These are handled in BerlinModelTaxonRelationshipImport.handleSynonymNotes
About 150 cases, many of them easy to h...
Andreas Müller

09/14/2018

09:31 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string ...
please review Andreas Kohlbecker
09:30 PM bug #5868 (Resolved): re-establish support for wildcard at start of query string (includes the qu...
Applied in changeset commit:cdmlib|d6bdbc3d4a6d81dd3298913e1a31b64d76b88211. Andreas Kohlbecker
07:05 PM bug #7745 (Resolved): Subtree filter for dataportal services
Andreas Müller
03:16 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Kohlbecker wrote:
> Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs ...
Andreas Kohlbecker
02:23 PM bug #7686: Specimen title cache issues in data portal specimen table
The full titleCache is now available and no warning anymore: http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_... Andreas Müller
01:36 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
The titleCache issue is fixed.
I do not get the warnings on my local copy of the cyprus data base so I am not able...
Patrick Plitzner
01:39 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
Patrick Plitzner
01:37 PM feature request #7761 (Closed): Invalid designations should be displayed like misapplied names in...
The taxon relationship invalid designation should be displayed like MAN and pro parte synonyms in editor. Katja Luther
11:35 AM bug #7047 (Feedback): Vaadin UI and View scope beans are not always destroyed correctly
this should also be fixed now that #7742 is solved
Andreas Kohlbecker
11:15 AM bug #7759: classification subtreefilter settings in portal
fertig! das filtern im Portal scheint nun zu funktionieren.
Andreas Kohlbecker

09/13/2018

05:57 PM bug #7745: Subtree filter for dataportal services
Also the following webservices need to get a subtree filter:
* /portal/taxon/{uuid}
* /portal/taxon/{uuid}/taxo...
Andreas Kohlbecker
05:46 PM bug #7745: Subtree filter for dataportal services
Andreas Kohlbecker wrote:
> the query parameter should be the same in all webservice uris: `subtree`
DONE: commit...
Andreas Kohlbecker
05:43 PM bug #7745: Subtree filter for dataportal services
the query parameter should be the same in all webservice uris: `subtree` Andreas Kohlbecker
05:37 PM bug #7759 (Resolved): classification subtreefilter settings in portal
Applied in changeset commit:cdm-dataportal|80d21b78a68c7c45042e9b14b1e628e62cc7c1fc. Andreas Kohlbecker
03:49 PM bug #7759 (Closed): classification subtreefilter settings in portal
As fist step we need a simple subtreefilter field which takes the UUID of a TaxonNode.
This uuid is to be used as...
Andreas Kohlbecker
04:49 PM feature request #7760 (New): Specimen compressed table issues
**Andreas**:
~~~
hier scheint mir noch einiges offen. V.a. nehme ich Norbert und Tilo mit in cc, weil sie ja für ...
Patrick Plitzner
03:46 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRe...
this method is also used for the synonyms, so this is not solved or obsoletd by #7658 Andreas Kohlbecker
03:43 PM feature request #7658: use new taxon relationship DTO webservice in portal
Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs fehlen noch - kommt in 3.4! Andreas Kohlbecker
03:16 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
Andreas Müller
03:12 PM feature request #7658: use new taxon relationship DTO webservice in portal
please review again Andreas Kohlbecker
03:17 PM task #7758 (New): Manual cleanup after E+M import
The following tasks should be done manually after final E+M import:

* remaining issues from logfile
* deduplic...
Andreas Müller
12:38 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webs...
Unfortunately the solution is not complete for includeUnpublished = true.
In this case you again get an NPE as you...
Andreas Müller
11:37 AM task #7757 (Resolved): Replace deprecated hibernate @Index annotation
Applied in changeset commit:cdmlib|2b2a66ac3dcc84707a5c5bc631b1eb0241701cf6. Andreas Müller
11:37 AM task #7757 (Closed): Replace deprecated hibernate @Index annotation
... from model classes Andreas Müller

09/12/2018

12:38 AM bug #7745: Subtree filter for dataportal services
Subtree filter is now implemented for (rankSpecific)rootNotes and simple taxon search. API exists also for freetext s... Andreas Müller
12:36 AM bug #7745 (In Progress): Subtree filter for dataportal services
Andreas Müller
09:29 PM bug #7756 (Closed): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webser...
Andreas Kohlbecker
03:46 PM bug #7756 (Resolved): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webs...
Applied in changeset commit:cdmlib|273b0cdc0b621b1a4314631f83bf9bba9491f9ea. Andreas Kohlbecker
03:45 PM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice rela...
the bug was introduced by the commit:e08838f0 for #3560 Andreas Kohlbecker
03:44 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webs...

http://api.cybertaxonomy.org/corvidae/portal/taxon/147cb0d4-0f0e-4ba4-a234-e0b55d51677a/subtree/media.json?type=Ima...
Andreas Kohlbecker
03:47 PM feature request #7755: Implement advanced detail page for occurrences
Andreas Müller wrote:
> We may think about changing to ".../occurrence/uuid" if we want to have a common access po...
Andreas Kohlbecker
02:20 PM feature request #7755: Implement advanced detail page for occurrences
Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as...
Andreas Müller
02:05 PM feature request #7755: Implement advanced detail page for occurrences
Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as...
Katja Luther
01:28 PM feature request #7755: Implement advanced detail page for occurrences
i think the specimens page should be extended to also show the fieldUnit data as well as the data on all originals. H... Andreas Kohlbecker
12:12 PM feature request #7755 (New): Implement advanced detail page for occurrences
we also need a detail page for field units. At the moment we only can display the details of derived units.
implem...
Katja Luther
01:37 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Does not yet work for pro parte and partial MANs.
This is also still an open issue.
Andreas Müller
01:33 PM feature request #7658: use new taxon relationship DTO webservice in portal
Deduplication should include appendedPhrase part I think (this is also not yet implemented in the server side misappl... Andreas Müller
12:55 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> Exception for second MAN of Achillea santolinoides Lag.
>
>
> for this data on test.cyp...
Andreas Müller
12:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
The MANs are still unsorted. In the above example you can see that Achillea santolina sensu Chrtek ... is before Achi... Andreas Müller
12:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
I tested the above behavior. The reason is that secDetail differs (or misses in one case). secDetail is part of the s... Andreas Müller
12:32 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
Deduplication still does not work if everything is similar except for sensu and sensu detail. In the following screes... Andreas Müller
01:29 PM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in ...
is fixed now. Katja Luther
12:23 PM feature request #7753 (Feedback): use TaxonRelationshipFormatter for MAN and pro parte synonyms i...
~~"&" is not yet masked and not shown (e.g. as separator for the last member in a team)~~
done
Andreas Müller
09:48 AM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in ...
This replaces the implementation #6681 Katja Luther
01:07 PM feature request #7335 (Closed): Allow editing of pro parte and partial synonyms in the same way a...
This is fixed. Katja Luther
12:38 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRe...
This can probably be closed either as duplicate or as rejected (we use the TaxonRelationFormatter instead).
Can you ...
Andreas Müller
12:10 PM feature request #7599: treeView for specimen data in dataportal
as long as the detail page for field units is not implemented the link to detail page of field unit is removed. Katja Luther
12:02 PM bug #3535 (Closed): Automatically update descriptive view if content changed
Katja Luther
12:01 PM bug #7754 (New): tab order should be the same after saving of moved descriptions
copied from #3535:
It would be nice if the tap order of the editors could be the same as before saving. Currently th...
Katja Luther
11:54 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > When creating a species a new Taxon needs to be created for t...
Andreas Kohlbecker
11:52 AM feature request #7415 (Closed): Implement ExternalLinks for OriginalSources in TaxEditor
Katja Luther
08:15 AM bug #7752: accepted name context menu blocked after adding first misapplication
I think this is a duplicate for a known issue since e4.
Patrick, could you please link to the according ticket and...
Andreas Müller

09/11/2018

07:05 PM feature request #7599: treeView for specimen data in dataportal
thank you for fixing the issues so far. Unfortunately there are still some:
1)
on this page the *Locality* shoul...
Andreas Kohlbecker
12:02 PM feature request #7599: treeView for specimen data in dataportal
the php problems are solved and the NPE in CollectionDto as well Katja Luther
08:23 AM feature request #7599: treeView for specimen data in dataportal
There are still problems in **tree view** mode, see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datapo... Andreas Kohlbecker
06:40 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
finally fully solved, please review Andreas Kohlbecker
06:19 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
after adding a first misapplication in the name editor the context menu for the accepted name is no longer showing up... Andreas Kohlbecker
05:04 PM feature request #7594 (New): RegistrationWorkingsetEditor click on new serveral times
Andreas Kohlbecker
04:58 PM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event ...
Andreas Kohlbecker
04:56 PM bug #7742: vaadin view presenters not disposing ehcaches and object references in event bus which...
Applied in changeset commit:cdm-vaadin|c6b02b73bf43ef58ae109d89adb17fc4058d46b4. Andreas Kohlbecker
10:35 AM bug #7742 (Resolved): vaadin view presenters not disposing ehcaches and object references in even...
Applied in changeset commit:cdm-vaadin|5b7fa02addec342fc2190abc52f66430aefc5533. Andreas Kohlbecker
04:28 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
This seems all to be fixed or moved to new ticket.
Only open issue is the tab order which may change by saving (#...
Andreas Müller
03:23 PM feature request #7751 (New): Refactor drop down menus to allow empty selection
Currently we are using the trash can to remove the selection of a drop down. It is more intuitiv to have an empty ele... Patrick Plitzner
03:21 PM feature request #7750 (New): Allow multi selection for taxon assignment filter in specimen tree ...
The following options should be available:
* Individuals Associations
* Type Designation
* Determination
The ...
Patrick Plitzner
03:18 PM feature request #7749 (New): Add "Link with taxon selection" as an icon to the toolbar of the spe...
Patrick Plitzner
02:51 PM bug #6742 (Closed): IAE when using "Link with taxon selection" in Specimen-Editor
This works now.
We discussed to move the menu entry to an icon to make it more intuitive and present for the user...
Andreas Müller
02:24 PM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
This works now and can be closed. Only we could also change the label "External Link Type" to "Type", as this is clea... Andreas Müller
09:10 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
I set this ticket to resolved and create a new ticket for the reduced spaces between the fields. Katja Luther
02:16 PM feature request #6559 (Closed): Order misapplied names in name editor
Works fine. It can be discussed if setting the new elements to beginning is expected behavior. But for now we can lea... Andreas Müller
01:18 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in...
I checked at some places and it looks well. I think if we find places with to long labels we should decide in future ... Andreas Müller
09:11 AM feature request #7747 (New): Enhance display for URI element
copied from #7415:
Can we reduce the space between the 3 fields? Usually I like this but here I think it is better t...
Katja Luther

09/10/2018

05:31 PM bug #7686: Specimen title cache issues in data portal specimen table
On the specimen page still the Class UUID formatting occurs.
Also there are 2 warning now.
Example from test.cy...
Andreas Müller
05:27 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
> Offenbar wird die Zeile “xType of” nur ausgegeben, wenn die Typuskategorie eingegeben wurde? Das ist bei mehrere Sp... Andreas Müller
05:07 PM bug #7746 (Closed): NPE when deleting volatile DescriptionBase
In Facts View, when I tried to delete a volatile (not yet persisted) description I got the following exception
~...
Andreas Müller
04:29 PM feature request #7658: use new taxon relationship DTO webservice in portal
Andreas Müller wrote:
> & handling does not yet work correctly in teams. Probably a formatter issue #7666.
>
> ![...
Andreas Müller
01:50 PM feature request #6559 (Resolved): Order misapplied names in name editor
now the MAN, pro parte synonyms and invalid designations are sorted by titleCache, new elements are set at the beginn... Katja Luther
12:43 PM feature request #6559 (In Progress): Order misapplied names in name editor
Katja Luther
01:48 PM bug #6742 (Resolved): IAE when using "Link with taxon selection" in Specimen-Editor
Applied in changeset commit:taxeditor|cb86d7ee94765fcb197a9bd26f896e0a429d09ac. Patrick Plitzner
11:49 AM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" ...
I disabled wrapping for all detail view elements. Please also click through some other details views. I think this lo... Patrick Plitzner

09/09/2018

11:33 PM bug #7745 (Resolved): Subtree filter for dataportal services
This is a bit similar to the publish flag filter for data portal (#3560) and other services (#7492) Andreas Müller
10:16 PM task #7420 (Resolved): Import for higher taxon graph for phycobank
please review results of import on test.cdm_phycobank Andreas Müller
05:59 PM bug #7744 (New): The Concept View does not have Label
Other views do have a label which makes it easier to recognize for which object the respective data are shown (e.g. S... Andreas Müller
 

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