Activity
From 08/23/2018 to 09/21/2018
09/21/2018
- 05:36 PM bug #7786 (In Progress): ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- 05:35 PM bug #7786 (Resolved): ERS: Try to solve those occurrence sources for which the reference number can not be resolved
- Some of them only have a trailing whitespace problem and can be found by
~~~
SELECT *
FROM emOccurrenceSource
... - 04:33 PM task #7785: CdmUserHelper caches permission information
- Can the cache of the presenter be used in the CdmUserHelper to avoid loading the entities again?
- 04:25 PM task #7785 (Closed): CdmUserHelper caches permission information
- CdmUserHelper has been identified being hostspot in the cpu time analysis:
Caching entit... - 03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
- 03:45 PM task #7784 (Resolved): deduplicate and harmonize ClassificationController methods
- Applied in changeset commit:cdmlib|c3be000f7a4dee3e84481b0d1a020109cdf9ad59.
- 03:45 PM task #7784 (Closed): deduplicate and harmonize ClassificationController methods
- * ClassificationPortalController needs to be a subclass of ClassificationController
* duplicate and deprecated metho... - 01:25 PM bug #7783 (Closed): NamePopupEditor new buttons for genus and species
- For species the genus can only be selected from existing genera. In order to use a not existing genus it is currently...
- 01:17 PM feature request #7782 (New): for a new synonym it should be possible to change it to missaplied name without saving
- As comfortable way to create a MAN it would be good that changeToMisappliedName can be done for not persisted synonym...
- 01:10 PM bug #7424: right click menu does not show up in name editor
- the problem appears because the menu is set to disposed when a groupContainer is removed.
- 01:01 PM feature request #7594 (Closed): RegistrationWorkingsetEditor click on new serveral times
- problem solved, please review.
- 01:00 PM feature request #7594 (Resolved): RegistrationWorkingsetEditor click on new serveral times
- Applied in changeset commit:cdm-vaadin|edce7749ded3f3f7f3860106f45235532afe09a2.
- 11:45 AM bug #7187: ReferenceEditor: saving with DOI casues exception
- bitte review
- 11:44 AM feature request #3234 (Closed): implement cdm service method to collect SpecimensAndObservations via taxon
- 11:42 AM bug #7723 (Resolved): PhycoBank unpublished data must not be visible in Portal
- Issue fixed, only PUBLISHED registrations are visible now, please review.
- 10:40 AM bug #7781 (In Progress): original spelling is missing for accepted taxon in taxon page
- Hallo,
im Portal wird das “as ....“ nicht angezeigt
Beispiel:
http://caryophyllale... - 09:37 AM feature request #7780 (New): improve order of nomenclatural status types
- the order of nomenclatural status type should represent the importance of the type. Types used often, should be at th...
- 08:50 AM bug #7779 (Closed): swagger UI broken after springfox-swagger2 upgrade
- after upgrading springfox-swagger2 to version 2.6.1 (commit:4518f4b) the swagger UI is broken.
Presumably an upgrad... - 12:10 AM bug #7449 (Resolved): E+M: Import common names with no regionFk correctly
- The empty ones are all common names for ILDIS taxa:
~~~
SELECT n.FullNameCache, n.NameCache, cn.*
FROM emCommonN...
09/20/2018
- 11:44 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
- Ticket is fixed. Remaining issue is a data issue. Needs to be fixed by ERS.
- 11:43 PM feature request #7769: E+M: Handle postulated parental species as taxon extensions
- der Import für die postulated … ist fertig. Es gibt ein paar Fälle, bei denen die Namen nicht kursiv gesetzt sind. We...
- 03:57 PM feature request #7769 (In Progress): E+M: Handle postulated parental species as taxon extensions
- 11:39 PM bug #7424: right click menu does not show up in name editor
- Add this to current milestone as it is critical (often mentioned by users)
- 03:58 PM task #7455 (In Progress): [Check] Check all markers for correctnes
- 01:56 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
- 01:56 PM bug #7778 (Resolved): identifier links missing in taxon relations footnotes
- Applied in changeset commit:cdm-dataportal|c714960cc180ca547c9a9ddb25776c48e06f6141.
- 12:12 PM bug #7778 (Closed): identifier links missing in taxon relations footnotes
- identifier links missing when a footnote is created for taxon relations
see e.g.: http://caryophyllales.org/nepe... - 12:27 PM bug #3276: NPE for "Move Elements" context menu option
- please review
- 12:26 PM bug #3276 (Resolved): NPE for "Move Elements" context menu option
- Applied in changeset commit:taxeditor|90f49fe41d5816b7fce308a5200a950550758e1e.
- 11:27 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
- 11:27 AM bug #7773 (Closed): when changing rank the hybrid section is empty
- please review
- 11:25 AM bug #7773 (Resolved): when changing rank the hybrid section is empty
- Applied in changeset commit:taxeditor|2e765343e89b57f860f7661ad06385608b991d94.
- 11:26 AM feature request #2444 (Resolved): Disable binom and trinom hybrid flag when epithets are not available
- the problem of disappearing hybrid section is solved, so we can close this ticket as well.
please review - 11:14 AM bug #7777 (Closed): NPE on login attempt after logout
- login attempt after logging out
~~~
Caused by: java.lang.NullPointerException
at eu.etaxonomy.cdm.vaadin.view.L... - 09:41 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions added to it
- Applied in changeset commit:cdmlib|74ab8c12e9283ca97969609df026ec62708aa9f5.
- 08:12 AM feature request #7776 (Resolved): Add source of descriptive data set to SpecimenDescriptions added to it
- If a SpecimenDescription is added to the descriptive data set the source of the data set should be copied to the spec...
- 08:44 AM feature request #7599: treeView for specimen data in dataportal
- Andreas Kohlbecker wrote:
> 2)
>
> diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc... - 08:10 AM feature request #7775 (Closed): Factual Data label issue
- * ~~change context menu entry for creation of a new description to "New Factual Data Set"~~
* ~~add alternative for ... - 07:54 AM feature request #7774 (Closed): Show description source for description elements
- In the details view the list of sources of description elements should contain the source of the description but it s...
09/19/2018
- 04:24 PM feature request #7502 (Feedback): Add further columns to bulk editor
- @Andreas: Please review the first implementation of this for id and uuid
- 04:18 PM feature request #2444 (In Progress): Disable binom and trinom hybrid flag when epithets are not available
- this is implemented now, but there is still a bug see #7773
- 04:12 PM bug #7773 (Closed): when changing rank the hybrid section is empty
- When changing the rank the hybrid section is updated, but after this the section is empty. Resize or close and open t...
- 03:14 PM task #2406: DeterminationEventElement is lacking references
- Now, you can select the determination event to edit its supplemental data.
However, it is not possible anymore to se... - 03:07 PM task #2406 (Resolved): DeterminationEventElement is lacking references
- Applied in changeset commit:taxeditor|097d348b1b100faae233b8574a4a090de48fdbdd.
- 02:27 PM feature request #7674 (Resolved): Show taxon descriptions in character matrix editor
- 02:16 PM bug #7772: Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
- also rename attribute "term_id"
- 02:15 PM bug #7772 (Closed): Rename TermBase_inverseRepresentation to DefinedTermBase_InverseRepresentation
- to be consistent. If other TermBase classes are relevant they need an own table anyway, similar to the handling of (d...
- 02:00 PM feature request #7771 (Feedback): Format Misapplication search results as MAN, not as accepted taxa
- If a search result contains a misapplication only as a taxon related to an accepted taxon in the search filter it sho...
- 10:41 AM bug #7424 (In Progress): right click menu does not show up in name editor
- this problem appears only for synonyms and the accepted taxon, for missapplied names and pro parte synonyms the menu ...
- 10:15 AM bug #7541 (In Progress): Insufficient rights lead to missing focus in name editor
- 10:14 AM bug #7541: Insufficient rights lead to missing focus in name editor
- the missing possibility to set the focus on the name editor was because of a wrong permission check.
09/18/2018
- 03:37 PM feature request #7770 (New): E+M: Handle extensions like "postulated parental species" in data portal
- for details see #7769.
Postulated parental species are now implemented as TaxonBase Extensions of ExtensionType "p... - 03:28 PM feature request #7769 (Resolved): E+M: Handle postulated parental species as taxon extensions
- Postulated parental species are Name.Notes in BM. They should become Extensions of respective type, to be shown behin...
- 01:57 PM feature request #4129: Allow filtering by OriginalSourceType
- KL an ERS:
parallel zu den Import Issues für Euro+Med arbeiten wir auch die Editor Tickets ab, die Euro+Med betref... - 12:48 PM feature request #7283: Improvements for alternative identifier search
- ~~In search result the alternative identifier and the titlecache of the reference should be displayed (behind titleCa...
- 12:43 PM feature request #7283 (In Progress): Improvements for alternative identifier search
- 11:36 AM feature request #7345 (Resolved): [E+M] Common name references selectable in TaxEditor
- added a new markerType 'common name reference' and everytime a reference is added as source reference a marker of thi...
09/17/2018
- 10:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- I will try to write tests for the remaining issues and move them to a new ticket.
- 04:42 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- I moved synonym search and classification/subtree filters to new ticket #7764 as it is not really related to the topi...
- 03:22 AM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- The classification filter does NOT have any effect in the webservice (1). But it has in the service(2)!
I tested (... - 10:03 PM bug #7745 (Resolved): Subtree filter for dataportal services
- By the way there might be not implemented webservices that need to be protected, e.g. for PolytomousKeys. I think the...
- 10:02 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> Open issues:
>
> 3) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/7114... - 09:57 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> Open issues:
>
>
> 2) http://api.cybertaxonomy.org/caryophyllales_spp/portal/taxon/... - 04:53 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> Open issues:
>
> tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uui... - 02:59 PM bug #7745 (Feedback): Subtree filter for dataportal services
- Open issues:
tested with subtree filter `Plumbaginaceae Juss. [#t10#1986#28#] uuid=0ad45274-c5cf-4a95-aa1b-dc698e7... - 01:33 PM bug #7745 (Resolved): Subtree filter for dataportal services
- Can you please do the final review and close if everything works as expected (but we will probably get user feedback ...
- 09:01 AM bug #7745 (Feedback): Subtree filter for dataportal services
- Have to reopen. Freetext search on context does not yet work as expected. Searching for "All" returns no result with ...
- 08:48 AM bug #7745 (Closed): Subtree filter for dataportal services
- From all what I tested it works. I never got an "external" taxon.
- 08:01 PM feature request #7720: use new taxonRelationshipsDTO webservice for all taxon relations
- Remaining issues handled in #7766
- 07:52 PM feature request #7720 (Resolved): use new taxonRelationshipsDTO webservice for all taxon relations
- I think this was already done in 5.3. Maybe we can close **this** ticket as duplicate as #7658 includes by title all ...
- 08:00 PM feature request #7658 (Closed): use new taxon relationship DTO webservice in portal
- Close this ticket. Remaining (and new) issues moved to #7766
- 04:33 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
- duplicates #7767
- 04:32 PM bug #7768 (Duplicate): wrong tag type for secReference microcitation
- 04:32 PM bug #7767 (Resolved): Incorrect handling of secundum detail reference in formatter
- Applied in changeset commit:cdmlib|0ef1a15ed1a417160deec0b112f36a12de7363dc.
- 04:29 PM bug #7767 (Closed): Incorrect handling of secundum detail reference in formatter
- The sec detail is formatted as TagEnum.secundum not TagEnum.secMicroRef. This results in strange behavior on data por...
- 03:57 PM bug #7656 (Duplicate): Adapt inverse symbol for MisappliedName relationship type
- 03:56 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- AM an WGB:
die MANs sollten jetzt auch sichtbar sein und hoffentlich besser formatiert. Ein Problem ist noch, welc... - 12:33 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- ... and don't forget to adapt csv files.
- 12:32 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- ... and for pp Synonyms
~~~
UPDATE DefinedTermBase
SET symbol='⊃p.p.' , inverseSymbol = 'p.p.'
WHERE uuid= '8... - 12:17 PM bug #7514 (In Progress): Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- Critical because in use already
- 12:17 PM bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- For misapplied names (we may think about using a larger dash, also maybe change idInVocabulary)
~~~
UPDATE Define... - 03:27 PM bug #7766 (Closed): Remaining issues for using relationship DTO webservice in portal
- for details see #7658
* taxonrelation footnotes missing (see #7658#note-51 for details)
* sort order of the rel... - 03:04 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
- Andreas Kohlbecker wrote:
> The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are no... - 01:44 PM bug #7047 (In Progress): Vaadin UI and View scope beans are not always destroyed correctly
- 01:44 PM bug #7047: Vaadin UI and View scope beans are not always destroyed correctly
- The `RegistrationWorkingsetPresenter`, `LoginPresenter` and `RegistationUI` still are not destroyed correctly. At lea...
- 11:39 AM bug #7047 (Resolved): Vaadin UI and View scope beans are not always destroyed correctly
- 02:22 PM task #7757 (Closed): Replace deprecated hibernate @Index annotation
- The creation of a new database works as expected, the creation of the index works without exception and the search wo...
- 01:28 PM task #7757: Replace deprecated hibernate @Index annotation
- Please review, e.g. by creating a new database with the new code and compare if all table names and indexes work simi...
- 02:14 PM bug #7638 (Resolved): problem with media data missing meta data
- 01:50 PM feature request #7644 (Closed): Add "continued" flag to (Verbatim)Timeperiod
- 01:23 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- The code changes look ok.
- 01:42 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
- There is still a comma missing beetween the types if there are >1 types.
- 01:30 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- We should think about throwing an exception in the moment when the cacher is used incorrectly (e.g. for volatile obje...
- 01:25 PM feature request #7765 (New): Advanced UI to define the subtree filter in data portal
- Follow up from #7759
- 01:23 PM bug #7759 (Closed): classification subtreefilter settings in portal
- Yes we can close this ticket. But maybe we should create a follow up ticket for easier defining the subtree? Knowing ...
- 12:53 PM bug #7294 (Closed): keys block can not be disabled in tabless taxon page
- this obviously works now
- 12:36 PM bug #7691 (Closed): Empty "Bibliography" section
- *Nepenthes ampullacea* is now without the empty Bibliography section, so this works now!
- 11:43 AM feature request #7408: [E+M] Support for preferred common names in data portal
- This is soon required for E+M
- 11:33 AM task #7420 (Feedback): Import for higher taxon graph for phycobank
- Needs to be adapted
- 11:20 AM bug #7085 (New): cdmserver logfiles getting too big, use RollingFileAppender
- 11:11 AM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- Andreas Müller wrote:
> Unfortunately the solution is not complete for includeUnpublished = true.
>
> In this cas... - 04:41 AM bug #7764: Fix classification and synonym bug in taxon name freetext search
- The bug introduced by #5890 and the synonym search bug should now be fixed. Please review.
- 04:39 AM bug #7764 (Resolved): Fix classification and synonym bug in taxon name freetext search
- Applied in changeset commit:cdmlib|0c3d038322ffb0292ef44c461391233c20785cec.
- 04:25 AM bug #7764 (Closed): Fix classification and synonym bug in taxon name freetext search
- The bug is described in #5868#note-20 and previous.
* synonym search does not work with classification or subtree ...
09/16/2018
- 08:43 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- Andreas Müller wrote:
> OK, on th enew vesion of the cyprus database it works better. Especially the geo-search work... - 07:09 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- OK, on th enew vesion of the cyprus database it works better. Especially the geo-search works better.
But synonym ... - 02:52 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- The area search has a problem. Searching for "V*" and division1 returns NO result.
Searching for "*".
Searching ... - 02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- was it like this before. Is the sorting by some kind of percentage?
- 02:45 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- The search seems not to be sorted. This is what I get for "V*"
Vitex
Vitis vinifera L.
Vitis
Vulpia brevis Bois... - 02:37 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- For names with multiple whitespaces it is even more tricky.
*wilhelm* returns "Achillea santolinoides subsp. wilhe... - 02:32 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- Wildcards in the same word seem to work. I tested with "*chi*ll*" on test.cyprus.
However, "*chi*ll*san*" to find... - 02:25 PM bug #5868 (Feedback): re-establish support for wildcard at start of query string (includes the query string '*' )
- I get a warning when searching for Achil* on test.cyprus. This is probably not related to this ticket but mention thi...
- 07:20 PM feature request #7658: use new taxon relationship DTO webservice in portal
- And ofcourse the footnotes for non-MAN data are still missing. #7658#note-37 or should this be fixed already? If yes,...
- 07:15 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- 07:15 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Kohlbecker wrote:
> all mentioned bugs fixed!
Tested the 2 issues. Both work.
So the only open issue i... - 05:41 PM feature request #7658: use new taxon relationship DTO webservice in portal
- This problem is not release critical. We can fix it in 5.4. Maybe only moving up ppSyn to top would be nice but if no...
- 05:39 PM feature request #7658: use new taxon relationship DTO webservice in portal
- The sort order is still not correct. We should first have pro parte/partial synonyms, then invalid designations, then...
- 05:37 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- all mentioned bugs fixed!
- 05:08 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Andreas Müller wrote:
> > "auct." (appended phrase) does not show up, e.g.
> >
> > * "... - 05:00 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name... - 03:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Deduplication takes not yet place when the relationship is of type "pro parte Misaplied Name" or "partial Misapplied ...
- 03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> "auct." (appended phrase) does not show up, e.g.
>
> * "Achillea santolina" , non Test ... - 03:27 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- 03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
- "auct." (appended phrase) does not show up, e.g.
* "Achillea santolina" , non Test , but should be "Achillea ...
09/15/2018
- 03:15 PM task #7762: E+M: Handle "{non ..." annotations for misapplied names currently handled as appended phrase
- ~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
... - 03:02 PM task #7762 (New): E+M: Handle "{non ..." annotations for misapplied names currently handled as appended phrase
- ... check the names against existing names with exactly same reference and replace name if possible, also remove appe...
- 03:14 PM bug #7763: E+M (post?): Deduplicate "[non ..." blocking names for synonyms
- ~~~
SELECT n1.FullNameCache,n2.FullNameCache, r.Notes, n1.notes, n2.notes, pt1.notes, r.*
FROM RelPTaxon AS r
... - 03:13 PM bug #7763 (New): E+M (post?): Deduplicate "[non ..." blocking names for synonyms
- These are handled in BerlinModelTaxonRelationshipImport.handleSynonymNotes
About 150 cases, many of them easy to h...
09/14/2018
- 09:31 PM bug #5868: re-establish support for wildcard at start of query string (includes the query string '*' )
- please review
- 09:30 PM bug #5868 (Resolved): re-establish support for wildcard at start of query string (includes the query string '*' )
- Applied in changeset commit:cdmlib|d6bdbc3d4a6d81dd3298913e1a31b64d76b88211.
- 07:05 PM bug #7745 (Resolved): Subtree filter for dataportal services
- 03:16 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Kohlbecker wrote:
> Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs ... - 02:23 PM bug #7686: Specimen title cache issues in data portal specimen table
- The full titleCache is now available and no warning anymore: http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_...
- 01:36 PM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
- The titleCache issue is fixed.
I do not get the warnings on my local copy of the cyprus data base so I am not able... - 01:39 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
- 01:37 PM feature request #7761 (Closed): Invalid designations should be displayed like misapplied names in name editor
- The taxon relationship invalid designation should be displayed like MAN and pro parte synonyms in editor.
- 11:35 AM bug #7047 (Feedback): Vaadin UI and View scope beans are not always destroyed correctly
- this should also be fixed now that #7742 is solved
- 11:15 AM bug #7759: classification subtreefilter settings in portal
- fertig! das filtern im Portal scheint nun zu funktionieren.
09/13/2018
- 05:57 PM bug #7745: Subtree filter for dataportal services
- Also the following webservices need to get a subtree filter:
* /portal/taxon/{uuid}
* /portal/taxon/{uuid}/taxo... - 05:46 PM bug #7745: Subtree filter for dataportal services
- Andreas Kohlbecker wrote:
> the query parameter should be the same in all webservice uris: `subtree`
DONE: commit... - 05:43 PM bug #7745: Subtree filter for dataportal services
- the query parameter should be the same in all webservice uris: `subtree`
- 12:38 AM bug #7745: Subtree filter for dataportal services
- Subtree filter is now implemented for (rankSpecific)rootNotes and simple taxon search. API exists also for freetext s...
- 12:36 AM bug #7745 (In Progress): Subtree filter for dataportal services
- 05:37 PM bug #7759 (Resolved): classification subtreefilter settings in portal
- Applied in changeset commit:cdm-dataportal|80d21b78a68c7c45042e9b14b1e628e62cc7c1fc.
- 03:49 PM bug #7759 (Closed): classification subtreefilter settings in portal
- As fist step we need a simple subtreefilter field which takes the UUID of a TaxonNode.
This uuid is to be used as... - 04:49 PM feature request #7760 (New): Specimen compressed table issues
- **AK** :
hier scheint mir noch einiges offen. V.a. nehme ich Norbert und Tilo mit in cc, weil sie ja für die Requi... - 03:46 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- this method is also used for the synonyms, so this is not solved or obsoletd by #7658
- 03:43 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Fehler wie bei *Achillea santolinoides* beseitigt, aber die Fußnoten bei den nicht MANs fehlen noch - kommt in 3.4!
- 03:16 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- 03:12 PM feature request #7658: use new taxon relationship DTO webservice in portal
- please review again
- 03:17 PM task #7758 (New): Manual cleanup after E+M import
- The following tasks should be done manually after final E+M import:
* remaining issues from logfile
* deduplic... - 12:38 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- Unfortunately the solution is not complete for includeUnpublished = true.
In this case you again get an NPE as you... - 11:37 AM task #7757 (Resolved): Replace deprecated hibernate @Index annotation
- Applied in changeset commit:cdmlib|2b2a66ac3dcc84707a5c5bc631b1eb0241701cf6.
- 11:37 AM task #7757 (Closed): Replace deprecated hibernate @Index annotation
- ... from model classes
09/12/2018
- 09:29 PM bug #7756 (Closed): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- 03:46 PM bug #7756 (Resolved): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- Applied in changeset commit:cdmlib|273b0cdc0b621b1a4314631f83bf9bba9491f9ea.
- 03:45 PM bug #7756: org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
- the bug was introduced by the commit:e08838f0 for #3560
- 03:44 PM bug #7756 (Feedback): org.hibernate.QueryException in portal/taxon/{uuid}/subtree/media.json webservice related to relation direction param in prepareTaxonRelationshipQuery()
http://api.cybertaxonomy.org/corvidae/portal/taxon/147cb0d4-0f0e-4ba4-a234-e0b55d51677a/subtree/media.json?type=Ima...- 03:47 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Müller wrote:
> We may think about changing to ".../occurrence/uuid" if we want to have a common access po... - 02:20 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as... - 02:05 PM feature request #7755: Implement advanced detail page for occurrences
- Andreas Kohlbecker wrote:
> i think the specimens page should be extended to also show the fieldUnit data as well as... - 01:28 PM feature request #7755: Implement advanced detail page for occurrences
- i think the specimens page should be extended to also show the fieldUnit data as well as the data on all originals. H...
- 12:12 PM feature request #7755 (New): Implement advanced detail page for occurrences
- we also need a detail page for field units. At the moment we only can display the details of derived units.
implem... - 01:37 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Does not yet work for pro parte and partial MANs.
This is also still an open issue. - 01:33 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Deduplication should include appendedPhrase part I think (this is also not yet implemented in the server side misappl...
- 12:55 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Exception for second MAN of Achillea santolinoides Lag.
>
>
> for this data on test.cyp... - 12:49 PM feature request #7658: use new taxon relationship DTO webservice in portal
- The MANs are still unsorted. In the above example you can see that Achillea santolina sensu Chrtek ... is before Achi...
- 12:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
- I tested the above behavior. The reason is that secDetail differs (or misses in one case). secDetail is part of the s...
- 12:32 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- Deduplication still does not work if everything is similar except for sensu and sensu detail. In the following screes...
- 01:29 PM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- is fixed now.
- 12:23 PM feature request #7753 (Feedback): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- ~~"&" is not yet masked and not shown (e.g. as separator for the last member in a team)~~
done - 09:48 AM feature request #7753 (Closed): use TaxonRelationshipFormatter for MAN and pro parte synonyms in name editor
- This replaces the implementation #6681
- 01:07 PM feature request #7335 (Closed): Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor
- This is fixed.
- 12:38 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- This can probably be closed either as duplicate or as rejected (we use the TaxonRelationFormatter instead).
Can you ... - 12:10 PM feature request #7599: treeView for specimen data in dataportal
- as long as the detail page for field units is not implemented the link to detail page of field unit is removed.
- 12:02 PM bug #3535 (Closed): Automatically update descriptive view if content changed
- 12:01 PM bug #7754 (New): tab order should be the same after saving of moved descriptions
- copied from #3535:
It would be nice if the tap order of the editors could be the same as before saving. Currently th... - 11:54 AM feature request #7648: Create taxonrelation to genus or species when subordinate names are created
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > When creating a species a new Taxon needs to be created for t... - 11:52 AM feature request #7415 (Closed): Implement ExternalLinks for OriginalSources in TaxEditor
- 08:15 AM bug #7752: accepted name context menu blocked after adding first misapplication
- I think this is a duplicate for a known issue since e4.
Patrick, could you please link to the according ticket and...
09/11/2018
- 07:05 PM feature request #7599: treeView for specimen data in dataportal
- thank you for fixing the issues so far. Unfortunately there are still some:
1)
on this page the *Locality* shoul... - 12:02 PM feature request #7599: treeView for specimen data in dataportal
- the php problems are solved and the NPE in CollectionDto as well
- 08:23 AM feature request #7599: treeView for specimen data in dataportal
- There are still problems in **tree view** mode, see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datapo...
- 06:40 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- finally fully solved, please review
- 06:19 PM bug #7752 (Duplicate): accepted name context menu blocked after adding first misapplication
- after adding a first misapplication in the name editor the context menu for the accepted name is no longer showing up...
- 05:04 PM feature request #7594 (New): RegistrationWorkingsetEditor click on new serveral times
- 04:58 PM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- 04:56 PM bug #7742: vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- Applied in changeset commit:cdm-vaadin|c6b02b73bf43ef58ae109d89adb17fc4058d46b4.
- 10:35 AM bug #7742 (Resolved): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- Applied in changeset commit:cdm-vaadin|5b7fa02addec342fc2190abc52f66430aefc5533.
- 04:28 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
- This seems all to be fixed or moved to new ticket.
Only open issue is the tab order which may change by saving (#... - 03:23 PM feature request #7751 (New): Refactor drop down menus to allow empty selection
- Currently we are using the trash can to remove the selection of a drop down. It is more intuitiv to have an empty ele...
- 03:21 PM feature request #7750 (New): Allow multi selection for taxon assignment filter in specimen tree editor
- The following options should be available:
* Individuals Associations
* Type Designation
* Determination
The ... - 03:18 PM feature request #7749 (Rejected): Add "Link with taxon selection" as an icon to the toolbar of the specimen tree editor
- This button should only be active if one or more items are selected.
- 02:51 PM bug #6742 (Closed): IAE when using "Link with taxon selection" in Specimen-Editor
- This works now.
We discussed to move the menu entry to an icon to make it more intuitive and present for the user... - 02:24 PM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
- This works now and can be closed. Only we could also change the label "External Link Type" to "Type", as this is clea...
- 09:10 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
- I set this ticket to resolved and create a new ticket for the reduced spaces between the fields.
- 02:16 PM feature request #6559 (Closed): Order misapplied names in name editor
- Works fine. It can be discussed if setting the new elements to beginning is expected behavior. But for now we can lea...
- 01:18 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- I checked at some places and it looks well. I think if we find places with to long labels we should decide in future ...
- 09:11 AM feature request #7747 (New): Enhance display for URI element
- copied from #7415:
Can we reduce the space between the 3 fields? Usually I like this but here I think it is better t...
09/10/2018
- 05:31 PM bug #7686: Specimen title cache issues in data portal specimen table
- On the specimen page still the Class UUID formatting occurs.
Also there are 2 warning now.
Example from test.cy... - 05:27 PM bug #7686 (Feedback): Specimen title cache issues in data portal specimen table
- > Offenbar wird die Zeile “xType of” nur ausgegeben, wenn die Typuskategorie eingegeben wurde? Das ist bei mehrere Sp...
- 05:07 PM bug #7746 (Closed): NPE when deleting volatile DescriptionBase
- In Facts View, when I tried to delete a volatile (not yet persisted) description I got the following exception
~... - 04:29 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> & handling does not yet work correctly in teams. Probably a formatter issue #7666.
>
> ... - 11:10 AM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN
- Applied in changeset commit:taxeditor|a5dfa142a6e4540690c1b4c7f7ed3eaf176272c8.
- 10:30 AM bug #7500 (Feedback): Can't open both related accepted taxa of reused MAN
- Now, when trying to open the MANs in a Nameeditor I always get
Maybe I am wrong but also... - 01:16 PM bug #7743 (Rejected): test application contexts without <context:annotation-config />
- rejected since the remote test context is not a full context
- 01:14 PM bug #7743: test application contexts without <context:annotation-config />
- add the configuration:
~~~xml
<context:annotation-config />
<context:component-scan base-package="eu/eta... - 01:01 PM bug #7743 (Rejected): test application contexts without <context:annotation-config />
- the configuration `<context:annotation-config/>` to enable the annotation based spring configuration is missing in so...
- 01:05 PM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- Now again we have a line break for some labels which is not good for UX and not necessary I think.
Maybe this is OS ... - 12:19 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- 11:19 AM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- Again, in my original mail I mentioned to maybe change both, Nomenclatural title and Nomenclatural cache to Nomencl. ...
- 10:23 AM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- 09:15 AM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- As mentioned in the original mail (please always copy these mails completely - or at least the part that is relevant ...
- 12:54 PM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement
- 11:27 AM feature request #7715: Description sources should be handled same as DescriptionElement
- changed the label of descriptions and descriptionelements sources to sources
- 11:10 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
- Applied in changeset commit:taxeditor|b717449e43d02a06fe22849e383f8a6e922682aa.
- 09:48 AM feature request #7715: Description sources should be handled same as DescriptionElement
- Generally this ticket is ready and can be closed.
- 09:48 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement
- Andreas Müller wrote:
> The section is called "Description Sources" we should either relabel them "References" as in... - 11:33 AM bug #7742 (In Progress): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- 11:32 AM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks
- 11:09 AM bug #7729 (In Progress): potential ehcache CacheConfiguration problem
- 11:07 AM bug #7729: potential ehcache CacheConfiguration problem
- There are a couple of ehcaches being used in the cdmlib and in cdm-vaadin which need different configurations:
1) ... - 10:51 AM bug #6850 (Closed): NPE when clearing label of "kind of" term in TermEditor
- Andreas Müller wrote:
> Much better now. Only the Supplemental data do not automatically synchronize their label. Do... - 09:54 AM bug #6850 (Feedback): NPE when clearing label of "kind of" term in TermEditor
- Much better now. Only the Supplemental data do not automatically synchronize their label. Don't know if this is a gen...
- 10:50 AM feature request #7741 (New): Refresh supplemental data view title when editing terms
- Copied from #6973 and #6850
When editing the label of terms in the details view the label is not reflected immedia... - 10:17 AM feature request #7740 (New): Extract RCP styling to css file
- Many colors, font sizes and font styles can be defined declaratively in an external CSS file instead of in Java.
S... - 10:06 AM bug #7739 (New): If a volatile synonym is changed to a MAN it is not necessary to save first
- Currently when creating a MAN by first creating a synonym and then changing it to MAN WITHOUT saving the synonym befo...
- 09:18 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI
- It works well now and is also intuitive IMO.
- 09:06 AM bug #7738 (Closed): NPE for cancel in Use existing media dialog of specimen tree editor
- I did not really test explicitly but the code looks reasonable
- 08:57 AM bug #7738: NPE for cancel in Use existing media dialog of specimen tree editor
- exception was
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxonomy.eu (edit-test) / r... - 08:30 AM bug #7738 (Resolved): NPE for cancel in Use existing media dialog of specimen tree editor
- Applied in changeset commit:taxeditor|62079f0371543d34bde1fe550ecee2c0f7ea13eb.
- 08:30 AM bug #7738 (Closed): NPE for cancel in Use existing media dialog of specimen tree editor
- 12:17 AM bug #7736 (Duplicate): reusing media in the DescriptionElementDetailsView
- 12:02 AM bug #7736 (Duplicate): reusing media in the DescriptionElementDetailsView
- reusing media in the DescriptionElementDetailsView is not yet possible but should (needs discussion how the multiple ...
- 12:09 AM bug #7737 (Closed): Reference Details view does NOT give a multiple usage warning
- copied from #7706
testing other such warnings I realized that for references the warnings appear in the dialog but... - 12:07 AM bug #7733: show warning for multiple usage of media for SpecimenMedia
- remove first part of description as it has nothing to do with MediaSpecimen. It is handled in #7736 now in more complete
09/06/2018
- 09:39 PM feature request #7706 (Closed): Warning for reused Media is missing
- create several follow up tickets (#7732, #7733, #7734)
- 09:39 PM bug #7735 (New): reusing media in the DescriptionElementDetailsView
- copied from #7706:
reusing media in the DescriptionElementDetailsView is not yet possible but should (the multiple... - 09:38 PM bug #7734 (New): show warning for multiple usage also if the reference is not persisted yet
- copied from #7706:
when the new reference to a persisted and linked media object is not yet saved no warning is sh... - 09:35 PM bug #7733 (New): show warning for multiple usage of media for SpecimenMedia
- copied from #7706:
the warning is not shown in the Specimen Tree Editor for Media specimen. This is probably becau... - 09:33 PM bug #7732 (New): layout issues for the media details view
- copied from #7706:
* layout: the form type changer is not moved down and now appears beside the warning. This ... - 09:29 PM bug #7728 (Closed): NPE in wizard when changing type of reference
- 09:29 PM bug #7728: NPE in wizard when changing type of reference
- works fine. This was something like a copy&paste error because only the indention should be removed
- 03:54 PM bug #7728 (Resolved): NPE in wizard when changing type of reference
- Applied in changeset commit:taxeditor|656cc90a6ba5dbe24426373b9043fe92413bdcb2.
- 03:52 PM bug #7728: NPE in wizard when changing type of reference
- The class DateElement has a DisposeListener that disposes of the cdmFormFactory. But this is not how it should be han...
- 03:18 PM bug #7728: NPE in wizard when changing type of reference
- Patrick Plitzner wrote:
> It actually does not have anything to do with which type you choose or if it is an in-refe... - 03:02 PM bug #7728: NPE in wizard when changing type of reference
- It actually does not have anything to do with which type you choose or if it is an in-reference. The error can be rep...
- 02:58 PM bug #7728: NPE in wizard when changing type of reference
- Patrick Plitzner wrote:
> I cannot reproduce this. What exactly did you do?
>
> I opened a taxon in the name edi... - 02:58 PM bug #7728: NPE in wizard when changing type of reference
- open a reference and create a new inReference, set the type to webPage, after finish go back to the first reference a...
- 02:56 PM bug #7728: NPE in wizard when changing type of reference
- I cannot reproduce this. What exactly did you do?
I opened a taxon in the name editor -> Opened the reference wiz... - 01:04 PM bug #7728: NPE in wizard when changing type of reference
- This problem is caused by a cdmFormFactory which is set to disposed. at the moment we handle widget is disposed excep...
- 12:59 PM bug #7728 (Closed): NPE in wizard when changing type of reference
- Hallo Katja,
Beim Öffnen einer In-Referenz einer Referenz, die selber bereits im Dialog geöffnet ist, kam reproduz... - 09:06 PM bug #3535 (Resolved): Automatically update descriptive view if content changed
- 09:06 PM bug #3535: Automatically update descriptive view if content changed
- this ticket is fixed, created a new ticket for not moving image galleries ( #7731) and for the same moving functional...
- 10:22 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Note: when moving full description to another taxon the new label of the description is: "El... - 10:14 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove... - 09:40 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Note: the selection dialog for the target taxon does show the "start" taxon too. This is not... - 09:33 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Katja Luther wrote:
> > this fix was only for the menu entry in taxonnavigator, but I will ... - 08:42 AM bug #3535: Automatically update descriptive view if content changed
- But then we should separately allow to also move media/image galleries. Otherwise it is difficult to handle images wh...
- 08:05 AM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> By the way, moving facts also moves image galleries. For the user this might be unexpected a... - 09:06 PM bug #7731 (New): service method for moving descriptions should not move image galleries
- this is a follow up ticket for #3535#note-16
- 09:04 PM feature request #7730 (New): Add moving functionality to media view
- this is a follow up ticket from #3535#note-18
- 08:54 PM feature request #7433 (In Progress): new service method to get specimen by genetic AccessionNumber
- 08:52 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import
- 08:44 PM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted
- 10:15 AM feature request #7694 (In Progress): cdmlight export output of types needs to be adapted
- This is already in progress I guess, together with #7700. How far are these duplicates and how far is this ticket res...
- 06:35 PM feature request #7599 (In Progress): treeView for specimen data in dataportal
- 06:35 PM feature request #7599: treeView for specimen data in dataportal
- the php issues should be solved and the tree view is shown now.
- 06:11 PM feature request #7599: treeView for specimen data in dataportal
- further minor php problems at the example of http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/ta...
- 02:38 PM feature request #7599: treeView for specimen data in dataportal
- php notice in http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/1ad7630a-290b-464f-99e3-43...
- 02:19 PM feature request #7599: treeView for specimen data in dataportal
- Andreas Kohlbecker wrote:
> sollte eigentlich nicht in `_description_list_group_add()` hinein. Besser den link sch... - 02:18 PM feature request #7599: treeView for specimen data in dataportal
- 2)
diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc`
~~~php
if (strpos($desc... - 06:18 PM bug #7729 (New): potential ehcache CacheConfiguration problem
- the below warnings are reported frequently. ~~Interestingly it happens often short before the server freezes due to o...
- 03:45 PM feature request #7658: use new taxon relationship DTO webservice in portal
- & handling does not yet work correctly in teams. Probably a formatter issue #7666.
 - 03:38 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Deduplication must NOT take place if the rel. sec. differs (e.g. only one of the MANs has a rel. sec.). This is not y...
- 03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Andreas Müller wrote:
> Strange, with this entry:
>
> the webservice even does not return a second entry though i... - 03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Strange, with this entry:
the webservice even does not return a second entry though it exi... - 02:46 PM feature request #7658: use new taxon relationship DTO webservice in portal
- But it works when adding an explicit sensu reference. But explicit sensu is not a requirement.
- 02:44 PM feature request #7658: use new taxon relationship DTO webservice in portal
- Exception for second MAN of Achillea santolinoides Lag.
for this data on test.cyprus
!... - 02:31 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal
- Does not yet work for pro parte and partial MANs.
- 03:44 PM bug #6276: Nomenclatural references show parsed date string instead of publication year
- Sorry, wrong ticket
- 01:52 PM bug #7585 (Closed): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION
- 01:51 PM bug #7585 (Resolved): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION
- Applied in changeset commit:cdm-vaadin|e080f6ded006655d94a94b876eb9c1fb2143d60f.
- 01:49 PM feature request #6351 (Closed): jenkins cdmserver-index-job.groovy supports http basic authentication
- 11:56 AM feature request #6351 (Worksforme): jenkins cdmserver-index-job.groovy supports http basic authentication
- this is already implemented
- 01:37 PM bug #6850 (Resolved): NPE when clearing label of "kind of" term in TermEditor
- 08:49 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor
- Let's call it different: show the current titleCache, and for a completely empty term the Class+UUID will be generate...
- 08:42 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor
- So you want the default titleCache (class + UUID) to be shown everywhere except the text field, correct?
- 01:19 PM feature request #7680: Refactor TaxonNodeDetailElement
- the functionality is available now, but as described in the comment above we would need the functionality to create a...
- 12:53 PM feature request #7717: Implement "continued" in TimePeriod UI
- Andreas Müller wrote:
> Best would be to not show the "end" line at all if continued == true
I think it is cleare... - 12:51 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
- Applied in changeset commit:taxeditor|a1fbc94af7ad08a851eb87b92e7b8aa34b1f6a89.
- 12:30 PM bug #7500: Can't open both related accepted taxa of reused MAN
- now the chooseAcceptedTaxon dialog also used if a taxon is used as MAN and accepted taxon
- 11:47 AM bug #7500: Can't open both related accepted taxa of reused MAN
- ??
- 12:15 PM feature request #7727 (New): Server availability indication in TaxEditor
- Split from #5209:
We may also think about having a status line icon/label which permanently (every 2-3 seconds) ch... - 12:06 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- Applied in changeset commit:taxeditor|9f90442961085aa4cca97151bca3ba19ac77520f.
- 12:05 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references
- 12:05 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships()
- is this a duplicate for #7658? If yes it can be closed as duplicate.
- 11:56 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- This is critical for version 5.4 as needed for E+M
- 11:53 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- Why has this been moved? It was for review.
- 11:51 AM feature request #7725: Implement server availability check
- Andreas Kohlbecker wrote:
> Using the same service endpoint, with a HTTP HEAD requests you will check for the availa... - 10:48 AM feature request #7725: Implement server availability check
- > We may also want to have 2 services, one for checking availability of the server (without DB check) and one checkin...
- 10:31 AM feature request #7725 (New): Implement server availability check
- Split from #5209:
Applications may need to check if the server is available.
These services could be used for t... - 10:47 AM feature request #5209: Improve server availability check
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Shouldn't we split this ticket. This one stays a "how to handle... - 10:31 AM feature request #5209: Improve server availability check
- Andreas Müller wrote:
> Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
... - 10:22 AM feature request #5209: Improve server availability check
- Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
And then we need a sep... - 08:05 AM feature request #5209: Improve server availability check
- Copied from #6355:
In the above case the interruption took place during lazy initialization:
~~~
login : w.ber... - 08:04 AM feature request #5209 (New): Improve server availability check
- Copied from #6355:
Andreas M.:
"wie schon öfters erwähnt, sollten wir hier ja versuchen, eine nutzerfreundlichere... - 08:01 AM feature request #5209 (Duplicate): Improve server availability check
- 09:57 AM bug #5430 (New): P2 update of Taxonomic Editor bundled with JRE does not work
- 08:01 AM task #6736 (Duplicate): Handle server not available user friendly
- 08:01 AM bug #6355 (Duplicate): Improve message if server is down
- 12:06 AM feature request #3955: Are TermVocabularies URIs needed
- Should be decided within additivity. Also compare with handling of other classes allowing remote data such as Referen...
- 12:01 AM feature request #4028 (Resolved): Distinguish Features and Characters
- Check if this is fully handled (a duplicate) of #6618
09/05/2018
- 11:41 PM feature request #3972: Strictly validate username to not null and not empty
- Still need to implement notEmpty, not null already exists. Also the TaxEditor does not allow to enter empty usernames...
- 11:24 PM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view
- It seems to work now as expected.
- 04:27 PM feature request #7717 (Feedback): Implement "continued" in TimePeriod UI
- 03:57 PM feature request #7717: Implement "continued" in TimePeriod UI
- Best would be to not show the "end" line at all if continued == true
- 03:55 PM feature request #7717: Implement "continued" in TimePeriod UI
- Also I would move the continued flag up, before "End" as it is something inbetween start and end. This may make the b...
- 03:50 PM feature request #7717: Implement "continued" in TimePeriod UI
- I don't know if this is related, but when entering data into the parse field now, the cursor always jumps to the begi...
- 12:59 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
- 12:59 PM feature request #7717 (New): Implement "continued" in TimePeriod UI
- the continued flag is implemented in editor now. at the moment the end date is removed when the continued flag is set...
- 12:56 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI
- Applied in changeset commit:taxeditor|f36a68ee91d7e3c3c8365b13507c25af4da48b81.
- 03:56 PM feature request #7599: treeView for specimen data in dataportal
- Review Result:
1)
* method `create_cdm_specimen_or_observation()` needs either be named `render_cdm_specimen_o... - 03:42 PM feature request #7599 (Resolved): treeView for specimen data in dataportal
- starting review
- 03:43 PM bug #3535: Automatically update descriptive view if content changed
- By the way, moving facts also moves image galleries. For the user this might be unexpected as for the user it is not ...
- 03:39 PM bug #3535: Automatically update descriptive view if content changed
- Katja Luther wrote:
> this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems... - 03:31 PM bug #3535: Automatically update descriptive view if content changed
- Upps, even more critical. Even selecting "Cancel" does not cancel the operation but still saves the target data and a...
- 03:18 PM bug #3535: Automatically update descriptive view if content changed
- this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems in factual data view.
- 02:55 PM bug #3535: Automatically update descriptive view if content changed
- If the target taxon is dirty and unsaved and gives a warning. It says ".... all other unsaved changes will be saved"....
- 02:46 PM bug #3535: Automatically update descriptive view if content changed
- Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove... - 02:43 PM bug #3535: Automatically update descriptive view if content changed
- Note: ~~~when moving full description to another taxon the new label of the description is: "Elements moved from ..."...
- 02:41 PM bug #3535: Automatically update descriptive view if content changed
- Moving the full description seems to work correctly.
- 02:36 PM bug #3535 (Feedback): Automatically update descriptive view if content changed
- ~~~Now, the fact is not removed from the old taxon. Only closing and reopening the taxon removes it.
I tested this f... - 02:32 PM bug #3535: Automatically update descriptive view if content changed
- Note: ~~the selection dialog for the target taxon does show the "start" taxon too. This is not needed and should be f...
- 03:42 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus
- perfect !
- 02:47 PM bug #7722: NamePopupEditor: validation not working for rank genus
- solved, please review
- 02:46 PM bug #7722 (Resolved): NamePopupEditor: validation not working for rank genus
- Applied in changeset commit:cdm-vaadin|e8e0ad3ba36e287dc5fc1c398bc505f3f0a5a38e.
- 02:04 PM bug #7722: NamePopupEditor: validation not working for rank genus
- It could be that people validate higher rank names, too.
- 03:05 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- the mail from WB:
Hallo,
habe mir das angesehen. Es gibt ja praktisch 3 Fälle.
1. Gesamte information ist im ... - 03:03 PM feature request #7700 (Resolved): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- 02:27 PM bug #6742: IAE when using "Link with taxon selection" in Specimen-Editor
- I did not get the IAE anymore but also could not create any result. I tried to
* Select or not select a taxon in ... - 01:59 PM bug #4573 (Closed): Handle duplicate username, group or grantedAuthority correctly
- Works fine
- 01:49 PM feature request #7712 (Closed): PhycoBank UI Reference detail size
- perfect!
- 01:48 PM feature request #7624 (Closed): Note field for Reference in Vaadin
- Perfect!
- 11:11 AM feature request #7624: Note field for Reference in Vaadin
- please review
- 01:45 PM bug #7724 (New): PatternSyntaxException in GrantedAuthority search dialog
- See stacktrace. I looked at the code and wondered why first ALL GAs are loaded and then compared via regex. Is this s...
- 01:22 PM feature request #6475 (Closed): Make specimen tree editor collapsable and expandable
- Seems to work (though it took me some time to find the buttons. But it is general RCP way of putting them so it shoul...
- 12:48 PM bug #6850: NPE when clearing label of "kind of" term in TermEditor
- Generally this seems to work now. I also could not reproduce.
Only related issue: with empty label the label refre... - 12:37 PM bug #7371 (Closed): Deleting Polytomous Key throws NPE
- Works fine with nightly.
- 12:22 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE
- ... upps sorry, looks like I tested with production on test server , will test again
- 12:21 PM bug #7371 (Feedback): Deleting Polytomous Key throws NPE
- I still get
~~~
login : admin
editor version : 5.2.1
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
... - 12:35 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- Katja Luther wrote:
> if the continued flag is set and then setContinued(false) is called, this.end should be set to... - 12:24 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- if the continued flag is set and then setContinued(false) is called, this.end should be set to null
- 09:22 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- Can you please review? (Katja can you maybe also shortly review?)
- 12:03 PM bug #7622 (Closed): RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system
- no empty registrations since this has been fixed.
- 12:02 PM bug #7622: RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system
- this was originally a dataportal ticket which has erroneously be overwritten with other information. There is a new t...
- 12:01 PM bug #7667: NoHttpResponseException for large queries in bulk editor
- Difficult to test. Currently the test server does not respond very often. So it can't be decided if this is related.
... - 11:54 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
- Applied in changeset commit:taxeditor|d2c62a2b15901df2b03ad04d2f384f523d781492.
- 09:20 AM feature request #7715: Description sources should be handled same as DescriptionElement
- The section is called "Description Sources" we should either relabel them "References" as in DescriptionElementDetail...
- 09:14 AM feature request #7715: Description sources should be handled same as DescriptionElement
- Generally we need to discuss if moving the sources from Supplemental Data to Details View means removing them at firs...
- 09:12 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement
- Generally it works, but there comes a selection dialog for choosing the source type. This needs to be removed as for ...
- 11:52 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- Added AK as this is maybe a general ticket about handling of disposed in CdmTransientEntityCacher so might be interes...
- 11:50 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- It still exists sometimes
~~~
login :
editor version : 5.3.0.201809042248
server : ()
schema version :
os... - 11:35 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
- I can't reproduce this exception, I tested with nightly and rem_conf_am
- 10:43 AM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor
- Adding an external link throws NPE
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxon... - 09:14 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor
- 11:25 AM bug #7294: keys block can not be disabled in tabless taxon page
- review after release
- 11:25 AM bug #7691: Empty "Bibliography" section
- review after release
- 11:21 AM bug #7582 (Duplicate): prevent from creating empty registrations
- 11:12 AM bug #7702 (Closed): corrupted hibernate session after previous error during save operation
- hard to review - time will show - closing ticket
- 10:58 AM feature request #7412 (Closed): Allow editing supplemental data for DescriptiveDataSets
- Seems to work as expected
- 10:15 AM bug #7484 (Closed): Protected titleCache handling not correct in Reference detail view
- This specific issue seems to work consistent now.
General review of titleCache behavior is still open for review ... - 09:01 AM feature request #7706: Warning for reused Media is missing
- Is there a Media editing dialog at all? I was searching to check if the warning also works there but didn't find any....
- 08:50 AM feature request #7706 (Feedback): Warning for reused Media is missing
- Generally the ticket can be closed as it works if the above issues are either closed or moved to a new ticket.
- 08:49 AM feature request #7706: Warning for reused Media is missing
- Generally it works but there are some questions regarding various issues:
* layout: the form type changer is not ... - 07:56 AM bug #7698: CCE when creating new datasource
- works fine
- 07:55 AM bug #7698 (Closed): CCE when creating new datasource
09/04/2018
- 06:03 PM bug #7723 (Closed): PhycoBank unpublished data must not be visible in Portal
- Unpublished data visible in Portal, not in scientific name search, but as list under a reference including published ...
- 04:34 PM bug #7722 (Feedback): NamePopupEditor: validation not working for rank genus
- the validation has explicitly limited to ranks at SpeciesOrBelow. Is it sufficient to also include genus an below or ...
- 02:03 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus
- Validation button of genus without function (basionym, replaced syn. okay)
![] (picture672-1.png) - 04:01 PM bug #7582 (Resolved): prevent from creating empty registrations
- this has been solved mean while. Add according commits to the issue and close it.
- 04:00 PM feature request #7712: PhycoBank UI Reference detail size
- fixed, please review
- 04:00 PM feature request #7712 (Resolved): PhycoBank UI Reference detail size
- Applied in changeset commit:cdm-vaadin|8626f58493068136e66ff322a6834ce24cf53310.
- 12:03 PM feature request #7712: PhycoBank UI Reference detail size
- place citation detail below reference field and make both 100%wide
- 03:17 PM feature request #7624 (Resolved): Note field for Reference in Vaadin
- Applied in changeset commit:cdm-vaadin|85743e03023024ec6a9d0449fa91aa6bc08f5f6e.
- 03:16 PM feature request #7600: public setters for entity collections
- with commmit:a55fe58a I implemented the suggested setter for annotations. This implementation is not generic and shou...
- 01:59 PM bug #7721 (Rejected): Contraint Violation Exception on saving Reference Popup Editor
der Fehler trat auf, als in einem Workingset in Vaadin in einer Referenz eine Section angelegt worden war (Submitte...- 01:58 PM feature request #7706 (Resolved): Warning for reused Media is missing
- please review
- 01:49 PM feature request #7644 (Resolved): Add "continued" flag to (Verbatim)Timeperiod
- Applied in changeset commit:cdmlib|72b0e291fb98b3dcab357b7b5f0160bb8818a000.
- 09:52 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod
- We may not need a model change for this.
Instead we use a defined constant end date 9999-12-30 witch stands for "c... - 01:44 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal
- implementation complete, please review
- 01:43 PM feature request #7720 (Closed): use new taxonRelationshipsDTO webservice for all taxon relations
- for details see #6682
since completion of #7658 the taxonRelationshipsDTO is used for misapplied names and invlali... - 01:24 PM bug #7719 (New): UX Problems with context menu access in Bulkeditors
- in den Bulkeditoren kann man keine neuen Entities anlegen, ohne dass die Tabelle zu sehen ist.
Klickt man nicht auf... - 11:17 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Andreas Kohlbecker wrote:
> the NARROW_NO_BREAK is now a constant in the UTF8 class.
>
> But what about the
>
... - 10:59 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Andreas Müller wrote:
> should we change Assignee of this ticket?
No need to, the NARROW_NO_BREAK is now a consta... - 09:45 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- should we change Assignee of this ticket?
- 09:44 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- When implementing:
>add NARROW NO-BREAK (\u202F) after doubtful marker as requested in #5492
can you please add... - 10:38 AM feature request #7718 (Closed): New Registration: Exclude irrelevant reference types from list of existing publications
- Problem 1
In einem WorkingSet (Buch) sind Dutzende Arten neu beschieben. Die Buchreferenz sollte ein mal vorhanden ... - 10:23 AM feature request #7717: Implement "continued" in TimePeriod UI
- for the expected behavior see also TimePeriodTest.testContinued and .testToStringTimePeriod
- 09:55 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI
- The continued flag should be alternative to the end date. As described in #7644 either the flag is set or we have an ...
- 09:40 AM feature request #5882: option (as new default) to show full citation of accepted name below taxon page title
- I can not really see why this **follows** the last scrutiny ticket.
**This** ticket is about nomenclatural referen...
09/03/2018
- 03:14 PM feature request #7412 (Resolved): Allow editing supplemental data for DescriptiveDataSets
- Applied in changeset commit:taxeditor|0186b94d518629ffe1e2c7cb0c4ad0ee59605002.
- 02:45 PM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement
- Applied in changeset commit:taxeditor|472f773b8ac025f074ab28f5ef674533cda95717.
- 11:53 AM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement
- Description sources are currently in supplemental data, DescriptionElement in Details view.
Both should be in Deta... - 02:28 PM bug #3992 (In Progress): [CHECK] Use last scrutiny instead of sec reference
- Last scrutiny is now imported as sec references for those taxa having a last scrutiny information. Otherwise PTaxon.p...
- 02:24 PM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- The former citations suggestions (deriving from the last scrutiny references, PTaxon.lastScrutinyFk) are now imported...
- 01:32 PM task #7553 (Closed): move TypeDesignationSetManagerIT to cdmlib
- All tests on integration server where successful, so we can close this issue.
- 12:12 PM task #7553 (Resolved): move TypeDesignationSetManagerIT to cdmlib
- please review
- 12:03 PM feature request #1847 (Rejected): Apply description sources (references) for a DescriptionBase to all included description elements
- This is not primarily a taxeditor ticket therefore I close it but open a similar ticket for cdmlib services: #7716
- 12:01 PM bug #7716 (In Progress): Apply description sources (references) for a DescriptionBase to all included description elements
- Currently webservices, exports, dataportal and aggregation algorithms do not include source of Description for Descri...
- 11:00 AM feature request #674: Turn off all concept-related functionality in the Editor in Preferences
- The idea is to simplify the UI for standard users
09/01/2018
- 06:29 PM feature request #7714 (Rejected): PhycoBank UI Restrictions for reference types
- Do not allow registrations under Reference types "Journal", "Printseries"
1. there are nomenclatural acts in artic... - 09:17 AM task #7713: Atomize last scrutiny references
- Find last scrutiny references not in use:
~~~
SELECT *
FROM Reference AS r
WHERE (RefId NOT IN
(SELECT L... - 08:26 AM task #7713: Atomize last scrutiny references
- ~~~
SELECT RefId, Notes, RefYear, RefCategoryFk, RefCache, NomRefCache, PreliminaryFlag, InRefFk, Title, NomTitleAb...
08/31/2018
- 11:20 PM task #7713 (In Progress): Atomize last scrutiny references
- 11:17 PM task #7713 (In Progress): Atomize last scrutiny references
- Last scrutiny references currently are all(?) flat and with protected cache. They should:
* ~~use inreferences (s... - 06:18 PM feature request #7712 (Closed): PhycoBank UI Reference detail size
- Field "Reference detail" not long enough for standard entries,
e.g. 100, pl. 100, fig. 50-60 (see screen shot)
Prob... - 11:08 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Ok from this future perspective it makes sense to decouple the loading of the references and the display of the MANs....
- 01:47 AM bug #7711 (Resolved): Bugs in media gallery
- * ~~when removing a Media from image gallery it is immediately saved but should be saved only after save command, ins...
- 12:33 AM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- I reverted using UUID as key in CdmEntityCacheKey because
* the eu.etaxonomy.cdm.cache.CdmTransientEntityCacher s...
08/30/2018
- 06:34 PM bug #7641 (Closed): Reference editor: Error when incerting several new authors into a new author team
- Test 1: #3, #6, 3.screenshot: fehlerhaftes Team komplett gelöscht und neu angelegt mit 2 Autoren aus der Liste und 2 ...
- 12:22 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team
- Problem solved, please test.
- 12:20 PM bug #7641 (Resolved): Reference editor: Error when incerting several new authors into a new author team
- Applied in changeset commit:cdm-vaadin|fe3180d3be765b382f150b613f9936c711af9823.
- 06:11 PM feature request #7666 (In Progress): Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Andreas Kohlbecker wrote:
> A disadvantage of the current implememtation of the taxon relationships webservice and D... - 05:08 PM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- A disadvantage of the current implememtation of the taxon relationships webservice and DTO when being used in the dat...
- 03:13 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Kohlbecker wrote:
> I forgot one thing:
>
> I am a bit frightend about the change you made in the cacher ... - 03:11 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- I discussed with Katja the handling of un-persisted objects. She also thinks that unpersisted objects should/are not ...
- 02:20 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- I forgot one thing:
I am a bit frightend about the change you made in the cacher as this is touching an essential ... - 02:17 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Can you please check if this implementation solves your problems
My problem has been sol... - 02:12 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Andreas Müller wrote:
> Is this on purpose assigned to me?
>
You are the default assignee for cdmlib, as this t... - 02:10 PM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Can you please check if this implementation solves your problems and if you generally agree with the implementation?
... - 02:06 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Applied in changeset commit:cdmlib|67ff6af5f4a24c899385e13c671c8071d301f3e7.
- 01:39 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- With commit c5eb9820 I introduced more generics to the cacher (not yet 100% finished). Maybe we need to adapt externa...
- 01:33 PM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
- Is this on purpose assigned to me?
If yes, please give more info what is meant by PersonField. PersonField is not ... - 12:15 PM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type
the following code would fail:
~~~java
newP1 = Person.NewInstance();
newP2 = Person.NewInstance();
pf1 = ...- 02:39 PM task #7553: move TypeDesignationSetManagerIT to cdmlib
- Hallo Katja, könnntest du dieses ticket übernehmen?
Andreas
- 01:30 PM bug #7710 (New): Server info is missing in case of RemoteAccessException
- The method `MessagingUtils.getContextInfo()` generates the info.
It seems like `CdmStore.getActiveCdmSource()` ret... - 11:45 AM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table
- All the UI issues have been solved.
The issue with the DerivedUnit with no FieldUnit is handled in #7704 - 11:24 AM feature request #5972: Prevent user from unwanted author and reference updates
- > we might also handle this via rights&roles but probably this is not adequate. Generally we allow those users to upd...
- 11:15 AM feature request #7708 (New): Unify handling of i18n title/representation in identifiable entities
- Copied from #7707:
Also there are IdentifiableEntity someclasses which have similar but not equal data structures ... - 11:13 AM feature request #7707 (New): Handle title / titleCache similar to Media in Classification and other classes
- In #7705 the best way to handle i18n-title and titleCache in the UI for classes with "simple titleCache" (titleCache ...
- 10:58 AM task #6864 (Duplicate): [DISCUSS] Title and titleCache in Media
- This is mostly a duplicate for #7705
- 10:48 AM feature request #7706 (Closed): Warning for reused Media is missing
- If Media is linked from multiple data the according warning is missing in the details view. This is critical.
===
... - 10:45 AM feature request #7705: Improve handling of title/titleCache and multi-language support for Media
- Katja, Patrick: do you think we can move this ticket to one of the current target versions (5.3 or 5.4)?
- 10:30 AM feature request #7705 (New): Improve handling of title/titleCache and multi-language support for Media
- We need i18n support for Media title and description if i18n support is switched on in preferences.
Also we to edi... - 09:46 AM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- Patrick Plitzner wrote:
> This case can happen for type specimens that were created without a FieldUnit and just ass... - 08:04 AM feature request #7704 (Closed): Dataportal specimen table should be able to show DerivedUnits without a FieldUnit
- The current implementation of the specimen table works only on FieldUnits. Each row represents a FieldUnit and if ext...
- 07:57 AM bug #7703 (New): Multiple names cannot be shown in TypeDesignationDetailElement for specimens
- If a SpecimenTypeDesignation has more than one name set as `typifiedName` the DetailsView shows the following:
![]...
08/29/2018
- 06:50 PM bug #7702 (Resolved): corrupted hibernate session after previous error during save operation
- Applied in changeset commit:cdm-vaadin|7450d44bf31c73a41b69d836d1b87f0305784ad7.
- 06:11 PM bug #7702 (Closed): corrupted hibernate session after previous error during save operation
- This is the same problem as in #7559
the bug has not 100% been fixed be the changes made last time.
After this ... - 04:54 PM bug #7667 (Feedback): NoHttpResponseException for large queries in bulk editor
- I could not reproduce this anymore.
I tested on production and test server. - 04:28 PM bug #7528 (Closed): Allow changing the Registration status in the RegistrationWorkingsetEditor
- For curators all status are available but the selection of the available status is limited to guarantee a directed an...
- 03:20 PM feature request #7701 (New): Add link to typified name on specimen page of data portal
- "Anmerkung: Auf der Specimen Seite fehlt noch ein Link auf den typifizierten Namen, entsprechend den associated taxa."
- 03:19 PM bug #7686: Specimen title cache issues in data portal specimen table
- Andreas M.:
* Gibt der verwendete Webservice grundsätzlich nur Fieldunits oder werden auch DerivedUnits zurückgege... - 03:16 PM bug #7686: Specimen title cache issues in data portal specimen table
- Walter:
"Hierzu dann gleich auch noch zwei Anmerkungen:
Den Titel mit der ID ist unschön, zumal ja diese I... - 02:14 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- Andreas Müller wrote:
> On rem_conf_am (see stacktrace) and search for "A*"
I cannot reproduce this here either - 01:32 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- On rem_conf_am (see stacktrace) and search for "A*"
- 01:25 PM bug #7699 (Feedback): NPE in CdmTransientEntityCacher.getCacheElement()
- I cannot reproduce this. On which DB did you test? Does it always happen for any search on any DB?
- 11:59 AM bug #7699 (In Progress): NPE in CdmTransientEntityCacher.getCacheElement()
- NPE when searching for specimen (but probably not only then).
#9174 (duplicate) suggests that it happens when the ... - 01:51 PM bug #7500: Can't open both related accepted taxa of reused MAN
- Should I already review this ticket?
- 01:24 PM bug #7698 (Resolved): CCE when creating new datasource
- Applied in changeset commit:taxeditor|954982ef90bc8d6a36def59139fe9e96a2a7becc.
- 11:06 AM bug #7698 (Closed): CCE when creating new datasource
- ~~~
login : admin
editor version : 5.3.0.201808280657
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
schem... - 01:00 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- see also #7695
the typedesignationSetManager already do the deduplication of specimen for one homotypical group an... - 01:00 PM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport
- 12:23 PM bug #7371: Deleting Polytomous Key throws NPE
- please review
- 12:23 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE
- Applied in changeset commit:taxeditor|de55078200c8f2e52f4784ed9aa6b1c6611ddb86.
- 12:16 PM bug #4429 (Rejected): List of available software sites gets overwritten when updating product
- Not relevant anymore as update sites are hardcoded now.
- 09:21 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- I wonder if we should really require a single name uuid as obligatory input parameter. The semantics of the service s...
08/28/2018
- 04:00 PM bug #7692 (Worksforme): Empty "Specimens" section
- This is not a bug in the webservice. The Specimen in question actually has no FieldUnit.
So this is primarily a data... - 03:48 PM bug #7692: Empty "Specimens" section
- The actual problem is that the webservice `portal/taxon/fb987766-3ea5-45e0-a606-ca9b9d1253cf/associatedFieldUnits.jso...
- 03:08 PM bug #7692 (In Progress): Empty "Specimens" section
- The web service returns one specimen for this taxon:
http://api.cybertaxonomy.org/caryo_nepenthaceae/occurrence/by... - 03:01 PM bug #7691 (Resolved): Empty "Bibliography" section
- Applied in changeset commit:cdm-dataportal|850092a77002da04822cb23ce097e58b05ecbd5d.
- 02:31 PM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN
- Applied in changeset commit:taxeditor|c5cfeefde69828735b910d91075f0d7bdb42464f.
- 01:43 PM bug #7500 (In Progress): Can't open both related accepted taxa of reused MAN
- 01:52 PM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page
- this is a duplicate of #7294
- 07:39 AM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page
- When the tabless taxon page mode is enabled, the "Section/Tab visibility" setting for the "keys" section has no effect.
- 01:48 PM bug #7294 (Resolved): keys block can not be disabled in tabless taxon page
- Applied in changeset commit:cdm-dataportal|48a6d7e8e45c3140d00fc2b8ee5b66f472aa5a5a.
- 01:39 PM task #6778: remove big objects from taxeditor git repository
- Andreas Kohlbecker wrote:
> Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
>
> "To celebrate today's good... - 10:57 AM task #6778: remove big objects from taxeditor git repository
- Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
"To celebrate today's good news we've permanently raised ou... - 01:30 PM feature request #7680 (In Progress): Refactor TaxonNodeDetailElement
- the problems of not visible unplaced, excluded and publish checkboxes are fixed now. But to implement the NewTaxonNod...
- 12:43 PM bug #6289 (Closed): “Back to images” link as “Back to taxon page” when in table-less mode
- fixed and tested
- 12:41 PM bug #6289 (Resolved): “Back to images” link as “Back to taxon page” when in table-less mode
- Applied in changeset commit:cdm-dataportal|78bac306ef38b006fb5e622ce73f3ae699e6a10b.
- 12:28 PM bug #7563 (Closed): requests with %2F in URL are rejected by apache
- 12:28 PM bug #7563 (Resolved): requests with %2F in URL are rejected by apache
- 11:52 AM bug #7576 (Closed): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor
- Ok, the most severe problems seem to be fixed so far.
- 11:47 AM task #7596 (Closed): PhycoBank Portal - Formatting
- 11:35 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)"
- Problems with current implementation of the new webservice:
1. `relations.representation_L10n` and `relations.repr... - 11:09 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- The TypeDesignationSetManager needs to be modified, so that it can be used for multiple usecases. By default it valid...
- 10:28 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa
- changing the controller endpoint to `/name/{uuid}/homotypicGroupTypeDesignationsDTO`, issue description updated.
- 09:10 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation for homotypic groups and individual taxa
The webservice path:
* ~~`typedesignations/byTaxon/{taxon_uuid}`, `typedesignations/byHomotypicalGroup/{group_...- 10:51 AM bug #7679 (Closed): NPE when creating root child in classification
- OK, seems to work now.
- 08:52 AM bug #7679: NPE when creating root child in classification
- Andreas Müller wrote:
> Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to bot... - 10:26 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view
- 09:20 AM feature request #7696 (Resolved): use compact type representations in the synonymy as provided by the typedesignations/byTaxon/{taxon_uuid} service
* Source references should be shown as footnotes to the types
Note: see `compose_registation_dto($registration...- 09:10 AM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted
-
Relativ einfach sollte das (zumindest bei Nepenthes) für die nicht-atomisierten Typenzitate sein; da steht das Ori...
08/27/2018
- 10:24 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view
- yes you are right, it is better to create a new status with default type nom. illeg. then we do not have to set the s...
- 08:30 PM bug #7677 (Feedback): Nomenclatural Status is always set to nom illeg in details view
- The implementation is still not fully correct. If a NomenclaturalStatus WITHOUT type exists the type will be set to n...
- 07:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement
- Looks fine now.
Only, I would prefer to add some color to the parse field and/or the parse label. But this is not... - 07:33 PM bug #7679 (Feedback): NPE when creating root child in classification
- Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to both branches.
Can't test... - 03:25 PM bug #7679 (Resolved): NPE when creating root child in classification
- 03:00 PM bug #7679 (Feedback): NPE when creating root child in classification
- The setting of the publish flag does not yet work in this case. It should either be "true" (but currently is "false")...
- 01:49 PM bug #7679 (Resolved): NPE when creating root child in classification
- Andreas Müller wrote:
> Can't we put this to resolved already?
As we already moved it to 5.2 because of the hotfi... - 01:30 PM bug #7679: NPE when creating root child in classification
- Can't we put this to resolved already?
- 06:08 PM bug #7689: Mutliple representation exception when creating taxon nodes
- We should try to fix this soon if it is reproducable
- 03:46 PM bug #7689 (Worksforme): Mutliple representation exception when creating taxon nodes
- Steps to reproduce:
1. Create a root taxon via right-click on classification
2. Directly create a second one on t... - 05:25 PM bug #7555 (Closed): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
- Andreas Müller wrote:
> The issue described in the description (as link) seems to be solved.
>
> The 2 later link... - 05:11 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"
- Andreas Müller wrote:
> Maybe it is related that for Nepenthes alata no specimen appear: http://caryophyllales.org/n... - 05:08 PM bug #7692 (Worksforme): Empty "Specimens" section
- In some cases the tabless taxon page shows an empty "Specimens" section.
Example: http://caryophyllales.org/nepent... - 05:07 PM bug #7691 (Closed): Empty "Bibliography" section
- In some cases the tabless taxon page shows an empty "Bibliography" section.
Example: http://caryophyllales.org/nep... - 04:11 PM bug #7690 (New): Adapt available typedesignation editors to name rank
- The RegistrationWorkingsetEditor offers a selection dialog for NameTypeDesignationEditor and SpecimenTypeDesignationE...
- 02:17 PM feature request #7688 (New): Agent (person/team/instituion) page
- To make agents (persons, teams, institutions) linkable and give an overview on all data available on an agent we need...
- 02:03 PM bug #7687 (Closed): NPE in TypeDesignationSetManager
- Fix looks ok!
- 01:57 PM bug #7687: NPE in TypeDesignationSetManager
- Hallo,
habe ich vorläufig gefixt: commit:73e4daa. Wird heute Nacht eingespielt.
Andreas K., schaust du nochma... - 01:55 PM bug #7687 (Closed): NPE in TypeDesignationSetManager
Arbeit mit Vaadin http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/8295ec6c...- 01:49 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
- Andreas Kohlbecker wrote:
>...
> Maybe the http://docs.geotools.org/ provide a suitable parser? Also a possibility,... - 01:36 PM task #7089: Rights and Roles Workshop 2017-11
- I think it is better to close this ticket and open a new "Open issues for Rights and Roles" ticket.
- 01:31 PM task #7089 (In Progress): Rights and Roles Workshop 2017-11
- It is linked from [[WorkshopRightsAndRoles2017-11]], therefore I think we could close it without losing anything, BUT...
- 12:33 PM task #7089: Rights and Roles Workshop 2017-11
- Do we want to keep this ticket open?
- 01:31 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table
- 
Walter:
* Der Name nach Holotype of wird doppelt ausgegeben.
* Vor dem Link zum Herbarb... - 01:28 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal
- * add test data to 160.45.63.201/cdm_integration_reference
* create new dump which needs to be stored in edit-integr... - 01:22 PM bug #7528 (In Progress): Allow changing the Registration status in the RegistrationWorkingsetEditor
- This issue should not be closed as duplicate as it contains the references to the code changes.
I will rather clo... - 01:20 PM feature request #7618 (Duplicate): PhycoBank Curator rights
- closing this issue as duplicate of #7528 the discussion on the status `rejected` has moved to #7684
- 01:01 PM bug #7676 (Feedback): Suchfunktionalität in Registration UI Dateneingabe
- In der Ticketbeschreibung sind verschiedene Probleme beschrieben.
1. Suche nach der Registrierung (100267) für den... - 12:37 PM bug #6247 (Rejected): Check if concept relationships are correctly implemented in Gefäßpflanzenimport B
- As the redlists are not using the platform anymore we do not need the import anymore.
- 12:09 PM bug #7683 (In Progress): external links Audit table should allow uuid to be null
- 12:09 PM bug #7683: external links Audit table should allow uuid to be null
- This is generally the case already when databases are created via hibernate CREATE (see e.g. edit-test.cdm_test_eurom...
- 11:32 AM bug #7683 (Closed): external links Audit table should allow uuid to be null
- when deleting an external link an com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Column ...
- 11:49 AM bug #7682 (In Progress): Point.precision must not be 0 by default
- Already removed default value in class, still need update script to remove all 0 values from existing data
- 09:48 AM bug #7682 (Closed): Point.precision must not be 0 by default
- It seems as if there is a problem with the embedded type Point. Whenever long and lat are set the radius is always se...
- 11:32 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor
- the fields are available now, but the AUD table definition needs to be updated, the uuid should be allowed to be null...
08/24/2018
- 12:39 PM bug #7681 (Resolved): Update date field when editing parse field in TimePeriodElement
- Applied in changeset commit:taxeditor|9be67535c6cfd81916477c02af59ea94dcf4487b.
- 12:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement
- The date fields are only updated when a correct date could be parsed.
This could be misleading if i.e. you clear t... - 10:28 AM bug #7679: NPE when creating root child in classification
- I created a new ticket for the redesign -> #7680
- 10:26 AM bug #7679: NPE when creating root child in classification
- While investigating this issue I realized that the *NewTaxonNodeWizard* does not work like all the other "new" wizard...
- 08:36 AM bug #7679: NPE when creating root child in classification
- When entering data in "Detail" an exception is thrown with every key stroke
~~~
login : admin
editor version : 5... - 10:27 AM feature request #7680 (Closed): Refactor TaxonNodeDetailElement
- Copied from #7679:
While investigating this issue I realized that the *NewTaxonNodeWizard* does not work like all ...
08/23/2018
- 05:28 PM bug #7679 (In Progress): NPE when creating root child in classification
- 05:28 PM bug #7679 (Closed): NPE when creating root child in classification
- When calling "new" on classification, the dialog does not show the "publish" checkbox for some reason. Also the unpla...
- 04:09 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view
- ~~~ sql
select distinct name.id nameId, name.fullTitleCache fullTitle, defNow.titleCache currentStatus, a.date, ns.r... - 11:39 AM bug #7677: Nomenclatural Status is always set to nom illeg in details view
- This is the statement to get all nomenclatural status changes for update and create and which are changed to nom. ill...
- 10:10 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view
- 10:09 AM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view
- Hallo,
es scheint so, dass die default-Einstellung für Nomenclatural Status als "nom. illeg." einen gefährlichen N... - 11:26 AM feature request #7678 (New): Show exception message if editor update fails
- For example IOException when the hard drive is full
~~~
java.io.IOException: Es steht nicht genug Speicherplatz a...
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