Activity

From 08/09/2018 to 09/07/2018

09/07/2018

02:59 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: Andreas Müller wrote:
> Katja Luther wrote:
> > this is already i18n because CdmStore.getDefaultLanguage() returns ... Katja Luther
02:08 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: ~~Also please move "type" to top.~~ Andreas Müller
02:07 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: Can we reduce the space between the 3 fields? Usually I like this but here I think it is better to be compact. Andreas Müller
02:06 PM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor: Andreas Müller
02:06 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: ~~The labels may be shortened "External Link URI" -> "URI" . Same for Type. The "External links" header makes it clea... Andreas Müller
02:04 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: Katja Luther wrote:
> this is already i18n because CdmStore.getDefaultLanguage() returns the default language define... Andreas Müller
01:48 PM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor: Katja Luther
12:45 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: Andreas Müller wrote:
> For DescriptionElementSources the ExternalLinks appear now above Name in Source. This is bad... Katja Luther
12:25 PM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: this is already i18n because CdmStore.getDefaultLanguage() returns the default language defined in the preferences or... Katja Luther
09:38 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: Katja Luther wrote:
> I can't reproduce this exception, I tested with nightly and rem_conf_am
The exception still... Andreas Müller
09:21 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: For DescriptionElementSources the ExternalLinks appear now above Name in Source. This is bad for UX. We need to put i... Andreas Müller
01:48 PM bug #3535 (Resolved): Automatically update descriptive view if content changed: now only once the user is asked for saving and text is adapted. Katja Luther
12:53 PM bug #3535: Automatically update descriptive view if content changed: Andreas Müller wrote:
> Now, changes in the source are saved properly. Changes in the target are not saved even when... Katja Luther
12:50 PM bug #3535: Automatically update descriptive view if content changed: Also the request for saving now appears twice if both taxa are dirty. Once before selecting the target, and then afte... Andreas Müller
12:32 PM bug #3535 (Feedback): Automatically update descriptive view if content changed: Andreas Müller
12:31 PM bug #3535: Automatically update descriptive view if content changed: Now, changes in the source are saved properly. Changes in the target are not saved even when choosing "OK" Andreas Müller
12:28 PM bug #3535: Automatically update descriptive view if content changed: It would be nice if the tap order of the editors could be the same as before saving. Currently the order changes whic... Andreas Müller
11:44 AM bug #3535: Automatically update descriptive view if content changed: A minor issue: the processes often take time which is acceptable but an hourglass that the process is still ongoing i... Andreas Müller
01:33 PM bug #7500 (Closed): Can't open both related accepted taxa of reused MAN: Katja Luther
01:22 PM bug #7500 (Feedback): Can't open both related accepted taxa of reused MAN: I slightly changed the text of the selection dialog. Can you pleas check if this is ok.
I think it should appear o... Andreas Müller
11:13 AM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN: Katja Luther
11:13 AM bug #7500 (Feedback): Can't open both related accepted taxa of reused MAN: Andreas Müller wrote:
> Now, when trying to open the MANs in a Nameeditor I always get
>
> ![](picture898-1.png)... Katja Luther
11:10 AM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN: Applied in changeset commit:taxeditor|a5dfa142a6e4540690c1b4c7f7ed3eaf176272c8. Katja Luther
10:30 AM bug #7500 (Feedback): Can't open both related accepted taxa of reused MAN: Now, when trying to open the MANs in a Nameeditor I always get
![](picture898-1.png)
Maybe I am wrong but also... Andreas Müller
01:16 PM bug #7743 (Rejected): test application contexts without <context:annotation-config />: rejected since the remote test context is not a full context Andreas Kohlbecker
01:14 PM bug #7743: test application contexts without <context:annotation-config />: add the configuration:
~~~xml
<context:annotation-config />
<context:component-scan base-package="eu/eta... Andreas Kohlbecker
01:01 PM bug #7743 (Rejected): test application contexts without <context:annotation-config />: the configuration `<context:annotation-config/>` to enable the annotation based spring configuration is missing in so... Andreas Kohlbecker
01:05 PM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references: Now again we have a line break for some labels which is not good for UX and not necessary I think.
Maybe this is OS ... Andreas Müller
12:19 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references: Patrick Plitzner
11:19 AM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references: Again, in my original mail I mentioned to maybe change both, Nomenclatural title and Nomenclatural cache to Nomencl. ... Andreas Müller
10:23 AM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references: Patrick Plitzner
09:15 AM feature request #7726 (Feedback): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references: As mentioned in the original mail (please always copy these mails completely - or at least the part that is relevant ... Andreas Müller
12:54 PM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement: Andreas Müller
11:27 AM feature request #7715: Description sources should be handled same as DescriptionElement: changed the label of descriptions and descriptionelements sources to sources Katja Luther
11:10 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement: Applied in changeset commit:taxeditor|b717449e43d02a06fe22849e383f8a6e922682aa. Katja Luther
09:48 AM feature request #7715: Description sources should be handled same as DescriptionElement: Generally this ticket is ready and can be closed. Andreas Müller
09:48 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement: Andreas Müller wrote:
> The section is called "Description Sources" we should either relabel them "References" as in... Andreas Müller
11:33 AM bug #7742 (In Progress): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks: Andreas Kohlbecker
11:32 AM bug #7742 (Closed): vaadin view presenters not disposing ehcaches and object references in event bus which can cause memory leaks: Andreas Kohlbecker
11:09 AM bug #7729 (In Progress): potential ehcache CacheConfiguration problem: Andreas Kohlbecker
11:07 AM bug #7729: potential ehcache CacheConfiguration problem: There are a couple of ehcaches being used in the cdmlib and in cdm-vaadin which need different configurations:
1) ... Andreas Kohlbecker
10:51 AM bug #6850 (Closed): NPE when clearing label of "kind of" term in TermEditor: Andreas Müller wrote:
> Much better now. Only the Supplemental data do not automatically synchronize their label. Do... Patrick Plitzner
09:54 AM bug #6850 (Feedback): NPE when clearing label of "kind of" term in TermEditor: Much better now. Only the Supplemental data do not automatically synchronize their label. Don't know if this is a gen... Andreas Müller
10:50 AM feature request #7741 (New): Refresh supplemental data view title when editing terms: Copied from #6973 and #6850
When editing the label of terms in the details view the label is not reflected immedia... Patrick Plitzner
10:17 AM feature request #7740 (New): Extract RCP styling to css file: Many colors, font sizes and font styles can be defined declaratively in an external CSS file instead of in Java.
S... Patrick Plitzner
10:06 AM bug #7739 (New): If a volatile synonym is changed to a MAN it is not necessary to save first: Currently when creating a MAN by first creating a synonym and then changing it to MAN WITHOUT saving the synonym befo... Andreas Müller
09:18 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI: It works well now and is also intuitive IMO. Andreas Müller
09:06 AM bug #7738 (Closed): NPE for cancel in Use existing media dialog of specimen tree editor: I did not really test explicitly but the code looks reasonable Andreas Müller
08:57 AM bug #7738: NPE for cancel in Use existing media dialog of specimen tree editor: exception was
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxonomy.eu (edit-test) / r... Andreas Müller
08:30 AM bug #7738 (Resolved): NPE for cancel in Use existing media dialog of specimen tree editor: Applied in changeset commit:taxeditor|62079f0371543d34bde1fe550ecee2c0f7ea13eb. Patrick Plitzner
08:30 AM bug #7738 (Closed): NPE for cancel in Use existing media dialog of specimen tree editor: Patrick Plitzner
12:17 AM bug #7736 (Duplicate): reusing media in the DescriptionElementDetailsView: Andreas Müller
12:02 AM bug #7736 (Duplicate): reusing media in the DescriptionElementDetailsView: reusing media in the DescriptionElementDetailsView is not yet possible but should (needs discussion how the multiple ... Andreas Müller
12:09 AM bug #7737 (Closed): Reference Details view does NOT give a multiple usage warning: copied from #7706
testing other such warnings I realized that for references the warnings appear in the dialog but... Andreas Müller
12:07 AM bug #7733: show warning for multiple usage of media for SpecimenMedia: remove first part of description as it has nothing to do with MediaSpecimen. It is handled in #7736 now in more complete Andreas Müller

09/06/2018

09:39 PM feature request #7706 (Closed): Warning for reused Media is missing: create several follow up tickets (#7732, #7733, #7734) Katja Luther
09:39 PM bug #7735 (New): reusing media in the DescriptionElementDetailsView: copied from #7706:
reusing media in the DescriptionElementDetailsView is not yet possible but should (the multiple... Katja Luther
09:38 PM bug #7734 (New): show warning for multiple usage also if the reference is not persisted yet: copied from #7706:
when the new reference to a persisted and linked media object is not yet saved no warning is sh... Katja Luther
09:35 PM bug #7733 (New): show warning for multiple usage of media for SpecimenMedia: copied from #7706:
the warning is not shown in the Specimen Tree Editor for Media specimen. This is probably becau... Katja Luther
09:33 PM bug #7732 (New): layout issues for the media details view: copied from #7706:

* layout: the form type changer is not moved down and now appears beside the warning. This ... Katja Luther
09:29 PM bug #7728 (Closed): NPE in wizard when changing type of reference: Katja Luther
09:29 PM bug #7728: NPE in wizard when changing type of reference: works fine. This was something like a copy&paste error because only the indention should be removed Katja Luther
03:54 PM bug #7728 (Resolved): NPE in wizard when changing type of reference: Applied in changeset commit:taxeditor|656cc90a6ba5dbe24426373b9043fe92413bdcb2. Patrick Plitzner
03:52 PM bug #7728: NPE in wizard when changing type of reference: The class DateElement has a DisposeListener that disposes of the cdmFormFactory. But this is not how it should be han... Patrick Plitzner
03:18 PM bug #7728: NPE in wizard when changing type of reference: Patrick Plitzner wrote:
> It actually does not have anything to do with which type you choose or if it is an in-refe... Patrick Plitzner
03:02 PM bug #7728: NPE in wizard when changing type of reference: It actually does not have anything to do with which type you choose or if it is an in-reference. The error can be rep... Patrick Plitzner
02:58 PM bug #7728: NPE in wizard when changing type of reference: Patrick Plitzner wrote:
> I cannot reproduce this. What exactly did you do?
>
> I opened a taxon in the name edi... Patrick Plitzner
02:58 PM bug #7728: NPE in wizard when changing type of reference: open a reference and create a new inReference, set the type to webPage, after finish go back to the first reference a... Katja Luther
02:56 PM bug #7728: NPE in wizard when changing type of reference: I cannot reproduce this. What exactly did you do?
I opened a taxon in the name editor -> Opened the reference wiz... Patrick Plitzner
01:04 PM bug #7728: NPE in wizard when changing type of reference: This problem is caused by a cdmFormFactory which is set to disposed. at the moment we handle widget is disposed excep... Katja Luther
12:59 PM bug #7728 (Closed): NPE in wizard when changing type of reference: Hallo Katja,
Beim Öffnen einer In-Referenz einer Referenz, die selber bereits im Dialog geöffnet ist, kam reproduz... Katja Luther
09:06 PM bug #3535 (Resolved): Automatically update descriptive view if content changed: Katja Luther
09:06 PM bug #3535: Automatically update descriptive view if content changed: this ticket is fixed, created a new ticket for not moving image galleries ( #7731) and for the same moving functional... Katja Luther
10:22 AM bug #3535: Automatically update descriptive view if content changed: Andreas Müller wrote:
> Note: when moving full description to another taxon the new label of the description is: "El... Katja Luther
10:14 AM bug #3535: Automatically update descriptive view if content changed: Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove... Katja Luther
09:40 AM bug #3535: Automatically update descriptive view if content changed: Andreas Müller wrote:
> Note: the selection dialog for the target taxon does show the "start" taxon too. This is not... Katja Luther
09:33 AM bug #3535: Automatically update descriptive view if content changed: Andreas Müller wrote:
> Katja Luther wrote:
> > this fix was only for the menu entry in taxonnavigator, but I will ... Katja Luther
08:42 AM bug #3535: Automatically update descriptive view if content changed: But then we should separately allow to also move media/image galleries. Otherwise it is difficult to handle images wh... Andreas Müller
08:05 AM bug #3535: Automatically update descriptive view if content changed: Andreas Müller wrote:
> By the way, moving facts also moves image galleries. For the user this might be unexpected a... Andreas Kohlbecker
09:06 PM bug #7731 (New): service method for moving descriptions should not move image galleries: this is a follow up ticket for #3535#note-16 Katja Luther
09:04 PM feature request #7730 (New): Add moving functionality to media view: this is a follow up ticket from #3535#note-18 Katja Luther
08:54 PM feature request #7433 (In Progress): new service method to get specimen by genetic AccessionNumber: Katja Luther
08:52 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import: Katja Luther
08:44 PM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted: Katja Luther
10:15 AM feature request #7694 (In Progress): cdmlight export output of types needs to be adapted: This is already in progress I guess, together with #7700. How far are these duplicates and how far is this ticket res... Andreas Müller
06:35 PM feature request #7599 (In Progress): treeView for specimen data in dataportal: Katja Luther
06:35 PM feature request #7599: treeView for specimen data in dataportal: the php issues should be solved and the tree view is shown now. Katja Luther
06:11 PM feature request #7599: treeView for specimen data in dataportal: further minor php problems at the example of http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/ta... Andreas Kohlbecker
02:38 PM feature request #7599: treeView for specimen data in dataportal: php notice in http://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/1ad7630a-290b-464f-99e3-43... Andreas Kohlbecker
02:19 PM feature request #7599: treeView for specimen data in dataportal: Andreas Kohlbecker wrote:
> sollte eigentlich nicht in `_description_list_group_add()` hinein. Besser den link sch... Andreas Kohlbecker
02:18 PM feature request #7599: treeView for specimen data in dataportal: 2)
diese neue Funktionalität in `modules/cdm_dataportal/includes/pre-drupal8.inc`
~~~php
if (strpos($desc... Andreas Kohlbecker
06:18 PM bug #7729 (New): potential ehcache CacheConfiguration problem: the below warnings are reported frequently. ~~Interestingly it happens often short before the server freezes due to o... Andreas Kohlbecker
03:45 PM feature request #7658: use new taxon relationship DTO webservice in portal: & handling does not yet work correctly in teams. Probably a formatter issue #7666.
![](picture944-1.png) Andreas Müller
03:38 PM feature request #7658: use new taxon relationship DTO webservice in portal: Deduplication must NOT take place if the rel. sec. differs (e.g. only one of the MANs has a rel. sec.). This is not y... Andreas Müller
03:30 PM feature request #7658: use new taxon relationship DTO webservice in portal: Andreas Müller wrote:
> Strange, with this entry:
>
> the webservice even does not return a second entry though i... Andreas Müller
03:27 PM feature request #7658: use new taxon relationship DTO webservice in portal: Strange, with this entry:
![](picture38-1.png)
the webservice even does not return a second entry though it exi... Andreas Müller
02:46 PM feature request #7658: use new taxon relationship DTO webservice in portal: But it works when adding an explicit sensu reference. But explicit sensu is not a requirement. Andreas Müller
02:44 PM feature request #7658: use new taxon relationship DTO webservice in portal: Exception for second MAN of Achillea santolinoides Lag.
![](picture970-1.png)
for this data on test.cyprus
!... Andreas Müller
02:31 PM feature request #7658 (Feedback): use new taxon relationship DTO webservice in portal: Does not yet work for pro parte and partial MANs. Andreas Müller
03:44 PM bug #6276: Nomenclatural references show parsed date string instead of publication year: Sorry, wrong ticket Andreas Müller
01:52 PM bug #7585 (Closed): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION: Andreas Kohlbecker
01:51 PM bug #7585 (Resolved): RegistrationCuratorRoleProbe does not only check the ROLE_CURATION: Applied in changeset commit:cdm-vaadin|e080f6ded006655d94a94b876eb9c1fb2143d60f. Andreas Kohlbecker
01:49 PM feature request #6351 (Closed): jenkins cdmserver-index-job.groovy supports http basic authentication: Andreas Kohlbecker
11:56 AM feature request #6351 (Worksforme): jenkins cdmserver-index-job.groovy supports http basic authentication: this is already implemented Andreas Kohlbecker
01:37 PM bug #6850 (Resolved): NPE when clearing label of "kind of" term in TermEditor: Patrick Plitzner
08:49 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor: Let's call it different: show the current titleCache, and for a completely empty term the Class+UUID will be generate... Andreas Müller
08:42 AM bug #6850: NPE when clearing label of "kind of" term in TermEditor: So you want the default titleCache (class + UUID) to be shown everywhere except the text field, correct? Patrick Plitzner
01:19 PM feature request #7680: Refactor TaxonNodeDetailElement: the functionality is available now, but as described in the comment above we would need the functionality to create a... Katja Luther
12:53 PM feature request #7717: Implement "continued" in TimePeriod UI: Andreas Müller wrote:
> Best would be to not show the "end" line at all if continued == true
I think it is cleare... Katja Luther
12:51 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI: Applied in changeset commit:taxeditor|a1fbc94af7ad08a851eb87b92e7b8aa34b1f6a89. Katja Luther
12:30 PM bug #7500: Can't open both related accepted taxa of reused MAN: now the chooseAcceptedTaxon dialog also used if a taxon is used as MAN and accepted taxon Katja Luther
11:47 AM bug #7500: Can't open both related accepted taxa of reused MAN: ?? Andreas Müller
12:15 PM feature request #7727 (New): Server availability indication in TaxEditor: Split from #5209:
We may also think about having a status line icon/label which permanently (every 2-3 seconds) ch... Andreas Müller
12:06 PM feature request #7726 (Resolved): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references: Applied in changeset commit:taxeditor|9f90442961085aa4cca97151bca3ba19ac77520f. Patrick Plitzner
12:05 PM feature request #7726 (Closed): Change label of "Abbrev. Title Cache" to "Nomenclatural Cache" in details view for references: Patrick Plitzner
12:05 PM feature request #5232: use TaxonBase.getTaggedTitle to get the sec reference in theme_cdm_taxonRelationships(): is this a duplicate for #7658? If yes it can be closed as duplicate. Andreas Müller
11:56 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon: This is critical for version 5.4 as needed for E+M Andreas Müller
11:53 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod: Why has this been moved? It was for review. Andreas Müller
11:51 AM feature request #7725: Implement server availability check: Andreas Kohlbecker wrote:
> Using the same service endpoint, with a HTTP HEAD requests you will check for the availa... Andreas Müller
10:48 AM feature request #7725: Implement server availability check: > We may also want to have 2 services, one for checking availability of the server (without DB check) and one checkin... Andreas Kohlbecker
10:31 AM feature request #7725 (New): Implement server availability check: Split from #5209:
Applications may need to check if the server is available.
These services could be used for t... Patrick Plitzner
10:47 AM feature request #5209: Improve server availability check: Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Shouldn't we split this ticket. This one stays a "how to handle... Andreas Müller
10:31 AM feature request #5209: Improve server availability check: Andreas Müller wrote:
> Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
... Patrick Plitzner
10:22 AM feature request #5209: Improve server availability check: Shouldn't we split this ticket. This one stays a "how to handle the exception" best ticket.
And then we need a sep... Andreas Müller
08:05 AM feature request #5209: Improve server availability check: Copied from #6355:
In the above case the interruption took place during lazy initialization:
~~~
login : w.ber... Patrick Plitzner
08:04 AM feature request #5209 (New): Improve server availability check: Copied from #6355:
Andreas M.:
"wie schon öfters erwähnt, sollten wir hier ja versuchen, eine nutzerfreundlichere... Patrick Plitzner
08:01 AM feature request #5209 (Duplicate): Improve server availability check: Patrick Plitzner
09:57 AM bug #5430 (New): P2 update of Taxonomic Editor bundled with JRE does not work: Patrick Plitzner
08:01 AM task #6736 (Duplicate): Handle server not available user friendly: Patrick Plitzner
08:01 AM bug #6355 (Duplicate): Improve message if server is down: Patrick Plitzner
12:06 AM feature request #3955: Are TermVocabularies URIs needed: Should be decided within additivity. Also compare with handling of other classes allowing remote data such as Referen... Andreas Müller
12:01 AM feature request #4028 (Resolved): Distinguish Features and Characters: Check if this is fully handled (a duplicate) of #6618 Andreas Müller

09/05/2018

11:41 PM feature request #3972: Strictly validate username to not null and not empty: Still need to implement notEmpty, not null already exists. Also the TaxEditor does not allow to enter empty usernames... Andreas Müller
11:24 PM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view: It seems to work now as expected. Andreas Müller
04:27 PM feature request #7717 (Feedback): Implement "continued" in TimePeriod UI: Andreas Müller
03:57 PM feature request #7717: Implement "continued" in TimePeriod UI: Best would be to not show the "end" line at all if continued == true Andreas Müller
03:55 PM feature request #7717: Implement "continued" in TimePeriod UI: Also I would move the continued flag up, before "End" as it is something inbetween start and end. This may make the b... Andreas Müller
03:50 PM feature request #7717: Implement "continued" in TimePeriod UI: I don't know if this is related, but when entering data into the parse field now, the cursor always jumps to the begi... Andreas Müller
12:59 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI: Katja Luther
12:59 PM feature request #7717 (New): Implement "continued" in TimePeriod UI: the continued flag is implemented in editor now. at the moment the end date is removed when the continued flag is set... Katja Luther
12:56 PM feature request #7717 (Resolved): Implement "continued" in TimePeriod UI: Applied in changeset commit:taxeditor|f36a68ee91d7e3c3c8365b13507c25af4da48b81. Katja Luther
03:56 PM feature request #7599: treeView for specimen data in dataportal: Review Result:
1)
* method `create_cdm_specimen_or_observation()` needs either be named `render_cdm_specimen_o... Andreas Kohlbecker
03:42 PM feature request #7599 (Resolved): treeView for specimen data in dataportal: starting review
Andreas Kohlbecker
03:43 PM bug #3535: Automatically update descriptive view if content changed: By the way, moving facts also moves image galleries. For the user this might be unexpected as for the user it is not ... Andreas Müller
03:39 PM bug #3535: Automatically update descriptive view if content changed: Katja Luther wrote:
> this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems... Andreas Müller
03:31 PM bug #3535: Automatically update descriptive view if content changed: Upps, even more critical. Even selecting "Cancel" does not cancel the operation but still saves the target data and a... Andreas Müller
03:18 PM bug #3535: Automatically update descriptive view if content changed: this fix was only for the menu entry in taxonnavigator, but I will have a look at the problems in factual data view. Katja Luther
02:55 PM bug #3535: Automatically update descriptive view if content changed: If the target taxon is dirty and unsaved and gives a warning. It says ".... all other unsaved changes will be saved".... Andreas Müller
02:46 PM bug #3535: Automatically update descriptive view if content changed: Andreas Müller wrote:
> Now, the fact is not removed from the old taxon. Only closing and reopening the taxon remove... Andreas Müller
02:43 PM bug #3535: Automatically update descriptive view if content changed: Note: ~~~when moving full description to another taxon the new label of the description is: "Elements moved from ..."... Andreas Müller
02:41 PM bug #3535: Automatically update descriptive view if content changed: Moving the full description seems to work correctly. Andreas Müller
02:36 PM bug #3535 (Feedback): Automatically update descriptive view if content changed: ~~~Now, the fact is not removed from the old taxon. Only closing and reopening the taxon removes it.
I tested this f... Andreas Müller
02:32 PM bug #3535: Automatically update descriptive view if content changed: Note: ~~the selection dialog for the target taxon does show the "start" taxon too. This is not needed and should be f... Andreas Müller
03:42 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus: perfect ! Wolf-Henning Kusber
02:47 PM bug #7722: NamePopupEditor: validation not working for rank genus: solved, please review Andreas Kohlbecker
02:46 PM bug #7722 (Resolved): NamePopupEditor: validation not working for rank genus: Applied in changeset commit:cdm-vaadin|e8e0ad3ba36e287dc5fc1c398bc505f3f0a5a38e. Andreas Kohlbecker
02:04 PM bug #7722: NamePopupEditor: validation not working for rank genus: It could be that people validate higher rank names, too. Wolf-Henning Kusber
03:05 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmlightExport: the mail from WB:
Hallo,
habe mir das angesehen. Es gibt ja praktisch 3 Fälle.
1. Gesamte information ist im ... Katja Luther
03:03 PM feature request #7700 (Resolved): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport: Katja Luther
02:27 PM bug #6742: IAE when using "Link with taxon selection" in Specimen-Editor: I did not get the IAE anymore but also could not create any result. I tried to
* Select or not select a taxon in ... Andreas Müller
01:59 PM bug #4573 (Closed): Handle duplicate username, group or grantedAuthority correctly: Works fine Andreas Müller
01:49 PM feature request #7712 (Closed): PhycoBank UI Reference detail size: perfect! Wolf-Henning Kusber
01:48 PM feature request #7624 (Closed): Note field for Reference in Vaadin: Perfect! Wolf-Henning Kusber
11:11 AM feature request #7624: Note field for Reference in Vaadin: please review Andreas Kohlbecker
01:45 PM bug #7724 (New): PatternSyntaxException in GrantedAuthority search dialog: See stacktrace. I looked at the code and wondered why first ALL GAs are loaded and then compared via regex. Is this s... Andreas Müller
01:22 PM feature request #6475 (Closed): Make specimen tree editor collapsable and expandable: Seems to work (though it took me some time to find the buttons. But it is general RCP way of putting them so it shoul... Andreas Müller
12:48 PM bug #6850: NPE when clearing label of "kind of" term in TermEditor: Generally this seems to work now. I also could not reproduce.
Only related issue: with empty label the label refre... Andreas Müller
12:37 PM bug #7371 (Closed): Deleting Polytomous Key throws NPE: Works fine with nightly. Andreas Müller
12:22 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE: ... upps sorry, looks like I tested with production on test server , will test again Andreas Müller
12:21 PM bug #7371 (Feedback): Deleting Polytomous Key throws NPE: I still get
~~~
login : admin
editor version : 5.2.1
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
... Andreas Müller
12:35 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod: Katja Luther wrote:
> if the continued flag is set and then setContinued(false) is called, this.end should be set to... Andreas Müller
12:24 PM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod: if the continued flag is set and then setContinued(false) is called, this.end should be set to null Katja Luther
09:22 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod: Can you please review? (Katja can you maybe also shortly review?) Andreas Müller
12:03 PM bug #7622 (Closed): RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system: no empty registrations since this has been fixed. Andreas Kohlbecker
12:02 PM bug #7622: RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system: this was originally a dataportal ticket which has erroneously be overwritten with other information. There is a new t... Andreas Kohlbecker
12:01 PM bug #7667: NoHttpResponseException for large queries in bulk editor: Difficult to test. Currently the test server does not respond very often. So it can't be decided if this is related.
... Andreas Müller
11:54 AM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement: Applied in changeset commit:taxeditor|d2c62a2b15901df2b03ad04d2f384f523d781492. Katja Luther
09:20 AM feature request #7715: Description sources should be handled same as DescriptionElement: The section is called "Description Sources" we should either relabel them "References" as in DescriptionElementDetail... Andreas Müller
09:14 AM feature request #7715: Description sources should be handled same as DescriptionElement: Generally we need to discuss if moving the sources from Supplemental Data to Details View means removing them at firs... Andreas Müller
09:12 AM feature request #7715 (Feedback): Description sources should be handled same as DescriptionElement: Generally it works, but there comes a selection dialog for choosing the source type. This needs to be removed as for ... Andreas Müller
11:52 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement(): Added AK as this is maybe a general ticket about handling of disposed in CdmTransientEntityCacher so might be interes... Andreas Müller
11:50 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement(): It still exists sometimes
~~~
login :
editor version : 5.3.0.201809042248
server : ()
schema version :
os... Andreas Müller
11:35 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: I can't reproduce this exception, I tested with nightly and rem_conf_am Katja Luther
10:43 AM feature request #7415 (Feedback): Implement ExternalLinks for OriginalSources in TaxEditor: Adding an external link throws NPE
~~~
login : admin
editor version : 5.3.0.201809042248
server : test.e-taxon... Andreas Müller
09:14 AM feature request #7415 (Resolved): Implement ExternalLinks for OriginalSources in TaxEditor: Katja Luther
11:25 AM bug #7294: keys block can not be disabled in tabless taxon page: review after release Andreas Kohlbecker
11:25 AM bug #7691: Empty "Bibliography" section: review after release Andreas Kohlbecker
11:21 AM bug #7582 (Duplicate): prevent from creating empty registrations: Andreas Kohlbecker
11:12 AM bug #7702 (Closed): corrupted hibernate session after previous error during save operation: hard to review - time will show - closing ticket Andreas Kohlbecker
10:58 AM feature request #7412 (Closed): Allow editing supplemental data for DescriptiveDataSets: Seems to work as expected Andreas Müller
10:15 AM bug #7484 (Closed): Protected titleCache handling not correct in Reference detail view: This specific issue seems to work consistent now.
General review of titleCache behavior is still open for review ... Andreas Müller
09:01 AM feature request #7706: Warning for reused Media is missing: Is there a Media editing dialog at all? I was searching to check if the warning also works there but didn't find any.... Andreas Müller
08:50 AM feature request #7706 (Feedback): Warning for reused Media is missing: Generally the ticket can be closed as it works if the above issues are either closed or moved to a new ticket. Andreas Müller
08:49 AM feature request #7706: Warning for reused Media is missing: Generally it works but there are some questions regarding various issues:
* layout: the form type changer is not ... Andreas Müller
07:56 AM bug #7698: CCE when creating new datasource: works fine Andreas Müller
07:55 AM bug #7698 (Closed): CCE when creating new datasource: Andreas Müller

09/04/2018

06:03 PM bug #7723 (Closed): PhycoBank unpublished data must not be visible in Portal: Unpublished data visible in Portal, not in scientific name search, but as list under a reference including published ... Wolf-Henning Kusber
04:34 PM bug #7722 (Feedback): NamePopupEditor: validation not working for rank genus: the validation has explicitly limited to ranks at SpeciesOrBelow. Is it sufficient to also include genus an below or ... Andreas Kohlbecker
02:03 PM bug #7722 (Closed): NamePopupEditor: validation not working for rank genus: Validation button of genus without function (basionym, replaced syn. okay)
![] (picture672-1.png) Wolf-Henning Kusber
04:01 PM bug #7582 (Resolved): prevent from creating empty registrations: this has been solved mean while. Add according commits to the issue and close it. Andreas Kohlbecker
04:00 PM feature request #7712: PhycoBank UI Reference detail size: fixed, please review Andreas Kohlbecker
04:00 PM feature request #7712 (Resolved): PhycoBank UI Reference detail size: Applied in changeset commit:cdm-vaadin|8626f58493068136e66ff322a6834ce24cf53310. Andreas Kohlbecker
12:03 PM feature request #7712: PhycoBank UI Reference detail size: place citation detail below reference field and make both 100%wide Andreas Kohlbecker
03:17 PM feature request #7624 (Resolved): Note field for Reference in Vaadin: Applied in changeset commit:cdm-vaadin|85743e03023024ec6a9d0449fa91aa6bc08f5f6e. Andreas Kohlbecker
03:16 PM feature request #7600: public setters for entity collections: with commmit:a55fe58a I implemented the suggested setter for annotations. This implementation is not generic and shou... Andreas Kohlbecker
01:59 PM bug #7721 (Rejected): Contraint Violation Exception on saving Reference Popup Editor: der Fehler trat auf, als in einem Workingset in Vaadin in einer Referenz eine Section angelegt worden war (Submitte... Andreas Kohlbecker
01:58 PM feature request #7706 (Resolved): Warning for reused Media is missing: please review Katja Luther
01:49 PM feature request #7644 (Resolved): Add "continued" flag to (Verbatim)Timeperiod: Applied in changeset commit:cdmlib|72b0e291fb98b3dcab357b7b5f0160bb8818a000. Andreas Müller
09:52 AM feature request #7644: Add "continued" flag to (Verbatim)Timeperiod: We may not need a model change for this.
Instead we use a defined constant end date 9999-12-30 witch stands for "c... Andreas Müller
01:44 PM feature request #7658 (Resolved): use new taxon relationship DTO webservice in portal: implementation complete, please review Andreas Kohlbecker
01:43 PM feature request #7720 (Closed): use new taxonRelationshipsDTO webservice for all taxon relations: for details see #6682
since completion of #7658 the taxonRelationshipsDTO is used for misapplied names and invlali... Andreas Kohlbecker
01:24 PM bug #7719 (New): UX Problems with context menu access in Bulkeditors: in den Bulkeditoren kann man keine neuen Entities anlegen, ohne dass die Tabelle zu sehen ist.
Klickt man nicht auf... Andreas Kohlbecker
11:17 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)": Andreas Kohlbecker wrote:
> the NARROW_NO_BREAK is now a constant in the UTF8 class.
>
> But what about the
>
... Andreas Müller
10:59 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)": Andreas Müller wrote:
> should we change Assignee of this ticket?
No need to, the NARROW_NO_BREAK is now a consta... Andreas Kohlbecker
09:45 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)": should we change Assignee of this ticket? Andreas Müller
09:44 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)": When implementing:
>add NARROW NO-BREAK (\u202F) after doubtful marker as requested in #5492
can you please add... Andreas Müller
10:38 AM feature request #7718 (Closed): New Registration: Exclude irrelevant reference types from list of existing publications: Problem 1
In einem WorkingSet (Buch) sind Dutzende Arten neu beschieben. Die Buchreferenz sollte ein mal vorhanden ... Wolf-Henning Kusber
10:23 AM feature request #7717: Implement "continued" in TimePeriod UI: for the expected behavior see also TimePeriodTest.testContinued and .testToStringTimePeriod Andreas Müller
09:55 AM feature request #7717 (Closed): Implement "continued" in TimePeriod UI: The continued flag should be alternative to the end date. As described in #7644 either the flag is set or we have an ... Andreas Müller
09:40 AM feature request #5882: option (as new default) to show full citation of accepted name below taxon page title: I can not really see why this **follows** the last scrutiny ticket.
**This** ticket is about nomenclatural referen... Andreas Müller

09/03/2018

03:14 PM feature request #7412 (Resolved): Allow editing supplemental data for DescriptiveDataSets: Applied in changeset commit:taxeditor|0186b94d518629ffe1e2c7cb0c4ad0ee59605002. Patrick Plitzner
02:45 PM feature request #7715 (Resolved): Description sources should be handled same as DescriptionElement: Applied in changeset commit:taxeditor|472f773b8ac025f074ab28f5ef674533cda95717. Patrick Plitzner
11:53 AM feature request #7715 (Closed): Description sources should be handled same as DescriptionElement: Description sources are currently in supplemental data, DescriptionElement in Details view.
Both should be in Deta... Andreas Müller
02:28 PM bug #3992 (In Progress): [CHECK] Use last scrutiny instead of sec reference: Last scrutiny is now imported as sec references for those taxa having a last scrutiny information. Otherwise PTaxon.p... Andreas Müller
02:24 PM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon: The former citations suggestions (deriving from the last scrutiny references, PTaxon.lastScrutinyFk) are now imported... Andreas Müller
01:32 PM task #7553 (Closed): move TypeDesignationSetManagerIT to cdmlib: All tests on integration server where successful, so we can close this issue. Andreas Kohlbecker
12:12 PM task #7553 (Resolved): move TypeDesignationSetManagerIT to cdmlib: please review Katja Luther
12:03 PM feature request #1847 (Rejected): Apply description sources (references) for a DescriptionBase to all included description elements: This is not primarily a taxeditor ticket therefore I close it but open a similar ticket for cdmlib services: #7716 Andreas Müller
12:01 PM bug #7716 (In Progress): Apply description sources (references) for a DescriptionBase to all included description elements: Currently webservices, exports, dataportal and aggregation algorithms do not include source of Description for Descri... Andreas Müller
11:00 AM feature request #674: Turn off all concept-related functionality in the Editor in Preferences: The idea is to simplify the UI for standard users Andreas Müller

09/01/2018

06:29 PM feature request #7714 (Rejected): PhycoBank UI Restrictions for reference types: Do not allow registrations under Reference types "Journal", "Printseries"
1. there are nomenclatural acts in artic... Wolf-Henning Kusber
09:17 AM task #7713: Atomize last scrutiny references: Find last scrutiny references not in use:
~~~
SELECT *
FROM Reference AS r
WHERE (RefId NOT IN
(SELECT L... Andreas Müller
08:26 AM task #7713: Atomize last scrutiny references: ~~~
SELECT RefId, Notes, RefYear, RefCategoryFk, RefCache, NomRefCache, PreliminaryFlag, InRefFk, Title, NomTitleAb... Andreas Müller

08/31/2018

11:20 PM task #7713 (In Progress): Atomize last scrutiny references: Andreas Müller
11:17 PM task #7713 (In Progress): Atomize last scrutiny references: Last scrutiny references currently are all(?) flat and with protected cache. They should:
* ~~use inreferences (s... Andreas Müller
06:18 PM feature request #7712 (Closed): PhycoBank UI Reference detail size: Field "Reference detail" not long enough for standard entries,
e.g. 100, pl. 100, fig. 50-60 (see screen shot)
Prob... Wolf-Henning Kusber
11:08 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)": Ok from this future perspective it makes sense to decouple the loading of the references and the display of the MANs.... Andreas Kohlbecker
01:47 AM bug #7711 (Resolved): Bugs in media gallery: * ~~when removing a Media from image gallery it is immediately saved but should be saved only after save command, ins... Andreas Müller
12:33 AM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: I reverted using UUID as key in CdmEntityCacheKey because
* the eu.etaxonomy.cdm.cache.CdmTransientEntityCacher s... Andreas Müller

08/30/2018

06:34 PM bug #7641 (Closed): Reference editor: Error when incerting several new authors into a new author team: Test 1: #3, #6, 3.screenshot: fehlerhaftes Team komplett gelöscht und neu angelegt mit 2 Autoren aus der Liste und 2 ... Wolf-Henning Kusber
12:22 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team: Problem solved, please test. Andreas Kohlbecker
12:20 PM bug #7641 (Resolved): Reference editor: Error when incerting several new authors into a new author team: Applied in changeset commit:cdm-vaadin|fe3180d3be765b382f150b613f9936c711af9823. Andreas Kohlbecker
06:11 PM feature request #7666 (In Progress): Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)": Andreas Kohlbecker wrote:
> A disadvantage of the current implememtation of the taxon relationships webservice and D... Andreas Müller
05:08 PM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)": A disadvantage of the current implememtation of the taxon relationships webservice and DTO when being used in the dat... Andreas Kohlbecker
03:13 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: Andreas Kohlbecker wrote:
> I forgot one thing:
>
> I am a bit frightend about the change you made in the cacher ... Andreas Müller
03:11 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: I discussed with Katja the handling of un-persisted objects. She also thinks that unpersisted objects should/are not ... Andreas Müller
02:20 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: I forgot one thing:
I am a bit frightend about the change you made in the cacher as this is touching an essential ... Andreas Kohlbecker
02:17 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: Andreas Müller wrote:
> Can you please check if this implementation solves your problems
My problem has been sol... Andreas Kohlbecker
02:12 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: Andreas Müller wrote:
> Is this on purpose assigned to me?
>
You are the default assignee for cdmlib, as this t... Andreas Kohlbecker
02:10 PM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: Can you please check if this implementation solves your problems and if you generally agree with the implementation?
... Andreas Müller
02:06 PM bug #7709 (Resolved): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: Applied in changeset commit:cdmlib|67ff6af5f4a24c899385e13c671c8071d301f3e7. Andreas Müller
01:39 PM bug #7709: CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: With commit c5eb9820 I introduced more generics to the cacher (not yet 100% finished). Maybe we need to adapt externa... Andreas Müller
01:33 PM bug #7709 (In Progress): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: Is this on purpose assigned to me?
If yes, please give more info what is meant by PersonField. PersonField is not ... Andreas Müller
12:15 PM bug #7709 (Feedback): CdmTransientEntityCacher cannot handle multiple unpersisted entities of the same type: the following code would fail:
~~~java
newP1 = Person.NewInstance();
newP2 = Person.NewInstance();
pf1 = ... Andreas Kohlbecker
02:39 PM task #7553: move TypeDesignationSetManagerIT to cdmlib: Hallo Katja, könnntest du dieses ticket übernehmen?
Andreas
Andreas Kohlbecker
01:30 PM bug #7710 (New): Server info is missing in case of RemoteAccessException: The method `MessagingUtils.getContextInfo()` generates the info.
It seems like `CdmStore.getActiveCdmSource()` ret... Patrick Plitzner
11:45 AM bug #7686 (Resolved): Specimen title cache issues in data portal specimen table: All the UI issues have been solved.
The issue with the DerivedUnit with no FieldUnit is handled in #7704 Patrick Plitzner
11:24 AM feature request #5972: Prevent user from unwanted author and reference updates: > we might also handle this via rights&roles but probably this is not adequate. Generally we allow those users to upd... Andreas Kohlbecker
11:15 AM feature request #7708 (New): Unify handling of i18n title/representation in identifiable entities: Copied from #7707:
Also there are IdentifiableEntity someclasses which have similar but not equal data structures ... Andreas Müller
11:13 AM feature request #7707 (New): Handle title / titleCache similar to Media in Classification and other classes: In #7705 the best way to handle i18n-title and titleCache in the UI for classes with "simple titleCache" (titleCache ... Andreas Müller
10:58 AM task #6864 (Duplicate): [DISCUSS] Title and titleCache in Media: This is mostly a duplicate for #7705 Andreas Müller
10:48 AM feature request #7706 (Closed): Warning for reused Media is missing: If Media is linked from multiple data the according warning is missing in the details view. This is critical.
===
... Andreas Müller
10:45 AM feature request #7705: Improve handling of title/titleCache and multi-language support for Media: Katja, Patrick: do you think we can move this ticket to one of the current target versions (5.3 or 5.4)? Andreas Müller
10:30 AM feature request #7705 (New): Improve handling of title/titleCache and multi-language support for Media: We need i18n support for Media title and description if i18n support is switched on in preferences.
Also we to edi... Andreas Müller
09:46 AM feature request #7704: Dataportal specimen table should be able to show DerivedUnits without a FieldUnit: Patrick Plitzner wrote:
> This case can happen for type specimens that were created without a FieldUnit and just ass... Andreas Müller
08:04 AM feature request #7704 (Closed): Dataportal specimen table should be able to show DerivedUnits without a FieldUnit: The current implementation of the specimen table works only on FieldUnits. Each row represents a FieldUnit and if ext... Patrick Plitzner
07:57 AM bug #7703 (New): Multiple names cannot be shown in TypeDesignationDetailElement for specimens: If a SpecimenTypeDesignation has more than one name set as `typifiedName` the DetailsView shows the following:
![]... Patrick Plitzner

08/29/2018

06:50 PM bug #7702 (Resolved): corrupted hibernate session after previous error during save operation: Applied in changeset commit:cdm-vaadin|7450d44bf31c73a41b69d836d1b87f0305784ad7. Andreas Kohlbecker
06:11 PM bug #7702 (Closed): corrupted hibernate session after previous error during save operation: This is the same problem as in #7559
the bug has not 100% been fixed be the changes made last time.
After this ... Andreas Kohlbecker
04:54 PM bug #7667 (Feedback): NoHttpResponseException for large queries in bulk editor: I could not reproduce this anymore.
I tested on production and test server. Patrick Plitzner
04:28 PM bug #7528 (Closed): Allow changing the Registration status in the RegistrationWorkingsetEditor: For curators all status are available but the selection of the available status is limited to guarantee a directed an... Andreas Kohlbecker
03:20 PM feature request #7701 (New): Add link to typified name on specimen page of data portal: "Anmerkung: Auf der Specimen Seite fehlt noch ein Link auf den typifizierten Namen, entsprechend den associated taxa." Patrick Plitzner
03:19 PM bug #7686: Specimen title cache issues in data portal specimen table: Andreas M.:
* Gibt der verwendete Webservice grundsätzlich nur Fieldunits oder werden auch DerivedUnits zurückgege... Patrick Plitzner
03:16 PM bug #7686: Specimen title cache issues in data portal specimen table: Walter:
"Hierzu dann gleich auch noch zwei Anmerkungen:

Den Titel mit der ID ist unschön, zumal ja diese I... Patrick Plitzner
02:14 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement(): Andreas Müller wrote:
> On rem_conf_am (see stacktrace) and search for "A*"
I cannot reproduce this here either Patrick Plitzner
01:32 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement(): On rem_conf_am (see stacktrace) and search for "A*" Andreas Müller
01:25 PM bug #7699 (Feedback): NPE in CdmTransientEntityCacher.getCacheElement(): I cannot reproduce this. On which DB did you test? Does it always happen for any search on any DB? Patrick Plitzner
11:59 AM bug #7699 (In Progress): NPE in CdmTransientEntityCacher.getCacheElement(): NPE when searching for specimen (but probably not only then).
#9174 (duplicate) suggests that it happens when the ... Katja Luther
01:51 PM bug #7500: Can't open both related accepted taxa of reused MAN: Should I already review this ticket? Andreas Müller
01:24 PM bug #7698 (Resolved): CCE when creating new datasource: Applied in changeset commit:taxeditor|954982ef90bc8d6a36def59139fe9e96a2a7becc. Patrick Plitzner
11:06 AM bug #7698 (Closed): CCE when creating new datasource: ~~~
login : admin
editor version : 5.3.0.201808280657
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
schem... Andreas Müller
01:00 PM feature request #7700: use TypeDesignationSetManager for creating typedesignation string in cdmlightExport: see also #7695
the typedesignationSetManager already do the deduplication of specimen for one homotypical group an... Katja Luther
01:00 PM feature request #7700 (Closed): use TypeDesignationSetManager for creating typedesignation string in cdmlightExport: Katja Luther
12:23 PM bug #7371: Deleting Polytomous Key throws NPE: please review Katja Luther
12:23 PM bug #7371 (Resolved): Deleting Polytomous Key throws NPE: Applied in changeset commit:taxeditor|de55078200c8f2e52f4784ed9aa6b1c6611ddb86. Katja Luther
12:16 PM bug #4429 (Rejected): List of available software sites gets overwritten when updating product: Not relevant anymore as update sites are hardcoded now. Andreas Müller
09:21 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation for homotypic groups and individual taxa: I wonder if we should really require a single name uuid as obligatory input parameter. The semantics of the service s... Andreas Müller

08/28/2018

04:00 PM bug #7692 (Worksforme): Empty "Specimens" section: This is not a bug in the webservice. The Specimen in question actually has no FieldUnit.
So this is primarily a data... Andreas Kohlbecker
03:48 PM bug #7692: Empty "Specimens" section: The actual problem is that the webservice `portal/taxon/fb987766-3ea5-45e0-a606-ca9b9d1253cf/associatedFieldUnits.jso... Andreas Kohlbecker
03:08 PM bug #7692 (In Progress): Empty "Specimens" section: The web service returns one specimen for this taxon:
http://api.cybertaxonomy.org/caryo_nepenthaceae/occurrence/by... Andreas Kohlbecker
03:01 PM bug #7691 (Resolved): Empty "Bibliography" section: Applied in changeset commit:cdm-dataportal|850092a77002da04822cb23ce097e58b05ecbd5d. Andreas Kohlbecker
02:31 PM bug #7500 (Resolved): Can't open both related accepted taxa of reused MAN: Applied in changeset commit:taxeditor|c5cfeefde69828735b910d91075f0d7bdb42464f. Katja Luther
01:43 PM bug #7500 (In Progress): Can't open both related accepted taxa of reused MAN: Katja Luther
01:52 PM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page: this is a duplicate of #7294 Andreas Kohlbecker
07:39 AM bug #7693 (Duplicate): keys section can not be hidden in tabless taxon page: When the tabless taxon page mode is enabled, the "Section/Tab visibility" setting for the "keys" section has no effect. Andreas Kohlbecker
01:48 PM bug #7294 (Resolved): keys block can not be disabled in tabless taxon page: Applied in changeset commit:cdm-dataportal|48a6d7e8e45c3140d00fc2b8ee5b66f472aa5a5a. Andreas Kohlbecker
01:39 PM task #6778: remove big objects from taxeditor git repository: Andreas Kohlbecker wrote:
> Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
>
> "To celebrate today's good... Patrick Plitzner
10:57 AM task #6778: remove big objects from taxeditor git repository: Eine weitere Möglichkeit ist der Umzug auf Gitlab.com.
"To celebrate today's good news we've permanently raised ou... Andreas Kohlbecker
01:30 PM feature request #7680 (In Progress): Refactor TaxonNodeDetailElement: the problems of not visible unplaced, excluded and publish checkboxes are fixed now. But to implement the NewTaxonNod... Katja Luther
12:43 PM bug #6289 (Closed): “Back to images” link as “Back to taxon page” when in table-less mode: fixed and tested Andreas Kohlbecker
12:41 PM bug #6289 (Resolved): “Back to images” link as “Back to taxon page” when in table-less mode: Applied in changeset commit:cdm-dataportal|78bac306ef38b006fb5e622ce73f3ae699e6a10b. Andreas Kohlbecker
12:28 PM bug #7563 (Closed): requests with %2F in URL are rejected by apache: Andreas Kohlbecker
12:28 PM bug #7563 (Resolved): requests with %2F in URL are rejected by apache: Andreas Kohlbecker
11:52 AM bug #7576 (Closed): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor: Ok, the most severe problems seem to be fixed so far. Andreas Kohlbecker
11:47 AM task #7596 (Closed): PhycoBank Portal - Formatting: Andreas Kohlbecker
11:35 AM feature request #7666: Remaining issues for "Formatter and DTO for taxon relationships (e.g. misapplied names)": Problems with current implementation of the new webservice:
1. `relations.representation_L10n` and `relations.repr... Andreas Kohlbecker
11:09 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa: The TypeDesignationSetManager needs to be modified, so that it can be used for multiple usecases. By default it valid... Andreas Kohlbecker
10:28 AM feature request #7695: web service providing compact TypeDesignation representation for homotypic groups and individual taxa: changing the controller endpoint to `/name/{uuid}/homotypicGroupTypeDesignationsDTO`, issue description updated. Andreas Kohlbecker
09:10 AM feature request #7695 (In Progress): web service providing compact TypeDesignation representation for homotypic groups and individual taxa: The webservice path:
* ~~`typedesignations/byTaxon/{taxon_uuid}`, `typedesignations/byHomotypicalGroup/{group_... Andreas Kohlbecker
10:51 AM bug #7679 (Closed): NPE when creating root child in classification: OK, seems to work now. Andreas Müller
08:52 AM bug #7679: NPE when creating root child in classification: Andreas Müller wrote:
> Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to bot... Patrick Plitzner
10:26 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view: Katja Luther
09:20 AM feature request #7696 (Resolved): use compact type representations in the synonymy as provided by the typedesignations/byTaxon/{taxon_uuid} service: * Source references should be shown as footnotes to the types
Note: see `compose_registation_dto($registration... Andreas Kohlbecker
09:10 AM feature request #7694 (Duplicate): cdmlight export output of types needs to be adapted: Relativ einfach sollte das (zumindest bei Nepenthes) für die nicht-atomisierten Typenzitate sein; da steht das Ori... Katja Luther

08/27/2018

10:24 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view: yes you are right, it is better to create a new status with default type nom. illeg. then we do not have to set the s... Katja Luther
08:30 PM bug #7677 (Feedback): Nomenclatural Status is always set to nom illeg in details view: The implementation is still not fully correct. If a NomenclaturalStatus WITHOUT type exists the type will be set to n... Andreas Müller
07:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement: Looks fine now.
Only, I would prefer to add some color to the parse field and/or the parse label. But this is not... Andreas Müller
07:33 PM bug #7679 (Feedback): NPE when creating root child in classification: Looks like commit 46f913aa went only into the hotfix branch but needs to be committed to both branches.
Can't test... Andreas Müller
03:25 PM bug #7679 (Resolved): NPE when creating root child in classification: Patrick Plitzner
03:00 PM bug #7679 (Feedback): NPE when creating root child in classification: The setting of the publish flag does not yet work in this case. It should either be "true" (but currently is "false")... Andreas Müller
01:49 PM bug #7679 (Resolved): NPE when creating root child in classification: Andreas Müller wrote:
> Can't we put this to resolved already?
As we already moved it to 5.2 because of the hotfi... Patrick Plitzner
01:30 PM bug #7679: NPE when creating root child in classification: Can't we put this to resolved already? Andreas Müller
06:08 PM bug #7689: Mutliple representation exception when creating taxon nodes: We should try to fix this soon if it is reproducable Andreas Müller
03:46 PM bug #7689 (Worksforme): Mutliple representation exception when creating taxon nodes: Steps to reproduce:
1. Create a root taxon via right-click on classification
2. Directly create a second one on t... Patrick Plitzner
05:25 PM bug #7555 (Closed): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis": Andreas Müller wrote:
> The issue described in the description (as link) seems to be solved.
>
> The 2 later link... Andreas Kohlbecker
05:11 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis": Andreas Müller wrote:
> Maybe it is related that for Nepenthes alata no specimen appear: http://caryophyllales.org/n... Andreas Kohlbecker
05:08 PM bug #7692 (Worksforme): Empty "Specimens" section: In some cases the tabless taxon page shows an empty "Specimens" section.
Example: http://caryophyllales.org/nepent... Andreas Kohlbecker
05:07 PM bug #7691 (Closed): Empty "Bibliography" section: In some cases the tabless taxon page shows an empty "Bibliography" section.
Example: http://caryophyllales.org/nep... Andreas Kohlbecker
04:11 PM bug #7690 (New): Adapt available typedesignation editors to name rank: The RegistrationWorkingsetEditor offers a selection dialog for NameTypeDesignationEditor and SpecimenTypeDesignationE... Andreas Kohlbecker
02:17 PM feature request #7688 (New): Agent (person/team/instituion) page: To make agents (persons, teams, institutions) linkable and give an overview on all data available on an agent we need... Andreas Müller
02:03 PM bug #7687 (Closed): NPE in TypeDesignationSetManager: Fix looks ok! Andreas Kohlbecker
01:57 PM bug #7687: NPE in TypeDesignationSetManager: Hallo,

habe ich vorläufig gefixt: commit:73e4daa. Wird heute Nacht eingespielt.

Andreas K., schaust du nochma... Andreas Kohlbecker
01:55 PM bug #7687 (Closed): NPE in TypeDesignationSetManager: Arbeit mit Vaadin http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/8295ec6c... Andreas Kohlbecker
01:49 PM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats: Andreas Kohlbecker wrote:
>...
> Maybe the http://docs.geotools.org/ provide a suitable parser? Also a possibility,... Andreas Müller
01:36 PM task #7089: Rights and Roles Workshop 2017-11: I think it is better to close this ticket and open a new "Open issues for Rights and Roles" ticket. Andreas Müller
01:31 PM task #7089 (In Progress): Rights and Roles Workshop 2017-11: It is linked from [[WorkshopRightsAndRoles2017-11]], therefore I think we could close it without losing anything, BUT... Andreas Kohlbecker
12:33 PM task #7089: Rights and Roles Workshop 2017-11: Do we want to keep this ticket open? Andreas Müller
01:31 PM bug #7686 (Closed): Specimen title cache issues in data portal specimen table: ![](picture727-1.png)
Walter:
* Der Name nach Holotype of wird doppelt ausgegeben.
* Vor dem Link zum Herbarb... Patrick Plitzner
01:28 PM feature request #7685 (Closed): Add Selenium tests for specimen table in data portal: * add test data to 160.45.63.201/cdm_integration_reference
* create new dump which needs to be stored in edit-integr... Patrick Plitzner
01:22 PM bug #7528 (In Progress): Allow changing the Registration status in the RegistrationWorkingsetEditor: This issue should not be closed as duplicate as it contains the references to the code changes.
I will rather clo... Andreas Kohlbecker
01:20 PM feature request #7618 (Duplicate): PhycoBank Curator rights: closing this issue as duplicate of #7528 the discussion on the status `rejected` has moved to #7684 Andreas Kohlbecker
01:01 PM bug #7676 (Feedback): Suchfunktionalität in Registration UI Dateneingabe: In der Ticketbeschreibung sind verschiedene Probleme beschrieben.
1. Suche nach der Registrierung (100267) für den... Andreas Kohlbecker
12:37 PM bug #6247 (Rejected): Check if concept relationships are correctly implemented in Gefäßpflanzenimport B: As the redlists are not using the platform anymore we do not need the import anymore. Andreas Müller
12:09 PM bug #7683 (In Progress): external links Audit table should allow uuid to be null: Andreas Müller
12:09 PM bug #7683: external links Audit table should allow uuid to be null: This is generally the case already when databases are created via hibernate CREATE (see e.g. edit-test.cdm_test_eurom... Andreas Müller
11:32 AM bug #7683 (Closed): external links Audit table should allow uuid to be null: when deleting an external link an com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Column ... Katja Luther
11:49 AM bug #7682 (In Progress): Point.precision must not be 0 by default: Already removed default value in class, still need update script to remove all 0 values from existing data Andreas Müller
09:48 AM bug #7682 (Closed): Point.precision must not be 0 by default: It seems as if there is a problem with the embedded type Point. Whenever long and lat are set the radius is always se... Andreas Kohlbecker
11:32 AM feature request #7415: Implement ExternalLinks for OriginalSources in TaxEditor: the fields are available now, but the AUD table definition needs to be updated, the uuid should be allowed to be null... Katja Luther

08/24/2018

12:39 PM bug #7681 (Resolved): Update date field when editing parse field in TimePeriodElement: Applied in changeset commit:taxeditor|9be67535c6cfd81916477c02af59ea94dcf4487b. Patrick Plitzner
12:38 PM bug #7681 (Closed): Update date field when editing parse field in TimePeriodElement: The date fields are only updated when a correct date could be parsed.
This could be misleading if i.e. you clear t... Patrick Plitzner
10:28 AM bug #7679: NPE when creating root child in classification: I created a new ticket for the redesign -> #7680 Patrick Plitzner
10:26 AM bug #7679: NPE when creating root child in classification: While investigating this issue I realized that the *NewTaxonNodeWizard* does not work like all the other "new" wizard... Patrick Plitzner
08:36 AM bug #7679: NPE when creating root child in classification: When entering data in "Detail" an exception is thrown with every key stroke
~~~
login : admin
editor version : 5... Patrick Plitzner
10:27 AM feature request #7680 (Closed): Refactor TaxonNodeDetailElement: Copied from #7679:
While investigating this issue I realized that the *NewTaxonNodeWizard* does not work like all ... Patrick Plitzner

08/23/2018

05:28 PM bug #7679 (In Progress): NPE when creating root child in classification: Andreas Müller
05:28 PM bug #7679 (Closed): NPE when creating root child in classification: When calling "new" on classification, the dialog does not show the "publish" checkbox for some reason. Also the unpla... Andreas Müller
04:09 PM bug #7677: Nomenclatural Status is always set to nom illeg in details view: ~~~ sql
select distinct name.id nameId, name.fullTitleCache fullTitle, defNow.titleCache currentStatus, a.date, ns.r... Andreas Müller
11:39 AM bug #7677: Nomenclatural Status is always set to nom illeg in details view: This is the statement to get all nomenclatural status changes for update and create and which are changed to nom. ill... Katja Luther
10:10 AM bug #7677 (Resolved): Nomenclatural Status is always set to nom illeg in details view: Katja Luther
10:09 AM bug #7677 (Closed): Nomenclatural Status is always set to nom illeg in details view: Hallo,
es scheint so, dass die default-Einstellung für Nomenclatural Status als "nom. illeg." einen gefährlichen N... Katja Luther
11:26 AM feature request #7678 (New): Show exception message if editor update fails: For example IOException when the hard drive is full
~~~
java.io.IOException: Es steht nicht genug Speicherplatz a... Patrick Plitzner

08/22/2018

04:31 PM bug #7672: use taxonRelationship formatter for label in referencing objects view: Maybe we should first consider moving formatting to server side as it is faster and as we may also make formatting de... Andreas Müller
02:31 PM bug #7672 (New): use taxonRelationship formatter for label in referencing objects view: Die Formatierer der Konzeptrelationen im RefObjects View scheinen die Relationen noch falsch herum zu beschreiben. Au... Katja Luther
03:41 PM bug #7676: Suchfunktionalität in Registration UI Dateneingabe: Das Phänomen ist schlecht reproduzierbar.
Bevor ich das Ticket geschrieben habe, hatte ich mich als admin aus und wi... Wolf-Henning Kusber
03:24 PM bug #7676 (Closed): Suchfunktionalität in Registration UI Dateneingabe: Referenz lt. Datenbankausgabe:
Moestrup, Ø. & Calado, A.J., Dinophyceae.Süßwasserflora von Mitteleuropa, 6: [I]-IX, ... Wolf-Henning Kusber
02:50 PM feature request #7675 (Rejected): Make columns with default values togglable: Columns that have default values defined in a taxon description should have a function to toggle their visibility Patrick Plitzner
02:47 PM feature request #7674 (Closed): Show taxon descriptions in character matrix editor: There are two types of taxon descriptions:
1. description from literature
1. description for default values
Th... Patrick Plitzner
02:32 PM task #7673 (New): review ABCD import: please review the ABCD import for alga terra new Katja Luther
02:22 PM bug #3535: Automatically update descriptive view if content changed: please review
Katja Luther
02:22 PM bug #3535 (Resolved): Automatically update descriptive view if content changed: Applied in changeset commit:taxeditor|c799a32e590620a2719f8f4edfa30604d5a23306. Katja Luther
01:13 PM bug #7484 (Resolved): Protected titleCache handling not correct in Reference detail view: Applied in changeset commit:taxeditor|0656435dc061bddf14ebdbdad6b3868f6e0f2eb3. Katja Luther
12:35 PM bug #7665: ConcurrentModificationException when closing Editor: Patrick Plitzner wrote:
> Applied in changeset commit:taxeditor|c7b20ed3c866508182a3d5d1b44b57fc1244b6f8.
Not sur... Andreas Müller
12:25 PM bug #7665 (Resolved): ConcurrentModificationException when closing Editor: Applied in changeset commit:taxeditor|c7b20ed3c866508182a3d5d1b44b57fc1244b6f8. Patrick Plitzner
12:24 PM bug #7665: ConcurrentModificationException when closing Editor: I could never reproduce this problem, so for reviewing we could just wait test for a while and see if it happens again. Patrick Plitzner
11:30 AM bug #7665 (In Progress): ConcurrentModificationException when closing Editor: use iterator.remove() Andreas Müller
12:21 PM bug #7352 (Closed): review propertyPaths in editor: Andreas Müller
12:07 PM feature request #6565 (Closed): [MASTER] Eclipse 4 Migration: Andreas Müller
12:05 PM feature request #6932 (Closed): Migrate bulk editor: Close this ticket as bulk editor has new developments like NAT tables and parallel loading anyways. Andreas Müller
12:01 PM bug #4465 (Worksforme): Handle Drag and Drop for Synonyms: this issue is fixed, follow up ticket with remaining problems is #7671 Katja Luther
11:59 AM bug #7064 (Closed): NameEditor remaining issues: Andreas Müller
11:56 AM bug #7064: NameEditor remaining issues: Created new tickets for open issues Andreas Müller
11:57 AM bug #7671 (New): Drag & Drop for synonyms has refresh problems: when drag & drop synonym from an existing homotypic group or into an existing homotypic group the refresh of the name... Katja Luther
11:49 AM feature request #7670 (New): [DISCUSS] Do we need right click "save" menu: ... or is icon + Str/S enough.
Ask users.
It was like this in Name Editor before e4. Either we should have it e... Andreas Müller
11:34 AM feature request #7015 (New): Migrate recent menu item: The recent menu should preferably show only recent items from the currently connected database Andreas Müller
09:36 AM bug #7576 (Resolved): Set Publish Flag for Subtree Dialog - Problems with Progressmonitor: The problem of lost connection between server and progress monitor dialog is fixed, the percentage display is fixed t... Katja Luther
08:42 AM feature request #7657 (Rejected): Use HQL query for loading character matrix: issue should be handled in #7589 Patrick Plitzner
08:41 AM feature request #7589: Performance, UX and stability patches for CharacterMatrix: commit:cdmlib|d9c066f5584fd689621509488a82c6649abb84d4 Patrick Plitzner

08/21/2018

03:41 PM bug #6850 (Feedback): NPE when clearing label of "kind of" term in TermEditor: @Andreas: I could not reproduce this behavior. Maybe this was fixed a while ago. Can you please test and close this t... Patrick Plitzner
03:29 PM bug #6742 (Feedback): IAE when using "Link with taxon selection" in Specimen-Editor: @Andreas: I could not reproduce this behavior. Maybe this was fixed a while ago. Can you please test and close this t... Patrick Plitzner
03:14 PM feature request #6475 (Resolved): Make specimen tree editor collapsable and expandable: Patrick Plitzner
01:50 PM feature request #5021 (Rejected): TreeNodeDropAdapterAssistant should use RemotingMoveTaxonNodeHandler: I think this is obsolete because the functionality is now in the service method which is used by both classes. Katja Luther
12:46 PM bug #4573 (Resolved): Handle duplicate username, group or grantedAuthority correctly: please review Katja Luther
12:33 PM bug #4573: Handle duplicate username, group or grantedAuthority correctly: now for users and groups there is a check for identical names and a message that the user/group already exists, pops up. Katja Luther
11:25 AM bug #7638: problem with media data missing meta data: The media file above does not exist, clicking on the link results in:
Sorry, no connection ...
Sorry, no conn... Katja Luther
09:46 AM bug #7145: NPE when trying to move a synonym into another homotypic group: this exception appeared again for Sabine:
Hallo,
bei Sabulina afghanica kann ich das Synonym nicht von hetero- ... Katja Luther
09:44 AM bug #7668 (Closed): NPE when changing author: mail of Sabine:
Hallo,
beim Versuch bei der Art Arenaria brachypetala den Autor zu ändern (Auswahl eines andere... Katja Luther
08:05 AM bug #7606: compact display of CDM Point data: Maybe we can leave it as an expandable element which is by default not expanded.
This allows to also show the deci... Andreas Müller

08/15/2018

08:12 PM bug #7656 (Duplicate): Adapt inverse symbol for MisappliedName relationship type: this is required for #6682
still need update script here Andreas Müller
03:38 PM feature request #7518 (Resolved): remaining issues for usage of NatTable for bulkeditor: Patrick Plitzner
03:31 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor: ~~**possibility to copy from a cell content**: On linux the context menu does not exist at all but CTRL+C works. I th... Patrick Plitzner
12:23 PM feature request #6321 (Resolved): Implement parallel loading + progress bar for loading objects into the bulk editor: Patrick Plitzner
09:54 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: Comment #6321#note-40: I just added a delay of 500ms to wait for the previous job to finish. Waiting explicitily is v... Patrick Plitzner
12:16 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team: All new authors, except the last one are not saved = they can not be selected. Wolf-Henning Kusber
12:06 PM bug #7641: Reference editor: Error when incerting several new authors into a new author team: http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/1c70fa46-c7a5-43e7-922a-379b200... Wolf-Henning Kusber
11:44 AM bug #7641: Reference editor: Error when incerting several new authors into a new author team: 2018-08-15
Documentation http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registration#!workingset/8be1a... Wolf-Henning Kusber
09:13 AM feature request #7653: [DISCUSS] Delete NameFacts => Result: no: WGB:
richtig wichtig erscheint mir vor allem die Sache mit den Typen. Aber für alle Fälle gilt, dass man das vorlä... Andreas Müller

08/14/2018

06:54 PM feature request #7655 (Duplicate): References Editor: book section offers title field: References Editor: A book section does not provide a title field, yet.
External users might miss this.
Workaround... Wolf-Henning Kusber
06:51 PM feature request #7654 (Duplicate): New registration page existing publications combobox does 'begins with search' on author names: The search on bibliographic authors is a full text search.
Example "Lange-Bert" (see screen shot) is searching for t... Wolf-Henning Kusber
04:41 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created: Also after import of new higher classifications we need to attache subgeneric taxa to their according taxa in bulk.
... Andreas Müller
04:38 PM feature request #7648: Create taxonrelation to genus or species when subordinate names are created: Andreas Kohlbecker wrote:
> When creating a species a new Taxon needs to be created for this species and the new tax... Andreas Müller
04:26 PM feature request #7653: [DISCUSS] Delete NameFacts => Result: no: WGB:
ich sehe da eine Reihe von Anwendungen für Namens-bezogene Fakten:
* ~~Etymologie – ist ganz allgemein wie ein... Andreas Müller
10:25 AM feature request #7653: [DISCUSS] Delete NameFacts => Result: no: AM:
upps, das ist mir vollständig neu, dass für Namen über den Bulkeditor auch (Name-)facts editiert werden können... Andreas Müller
10:23 AM feature request #7653 (Closed): [DISCUSS] Delete NameFacts => Result: no: NameFacts are currently very rarely used except for protologues. Protologues will be handled with nomenclatural sourc... Andreas Müller
09:49 AM feature request #7281 (Closed): Implement bromelian import: Katja Luther
09:46 AM bug #7638 (Resolved): problem with media data missing meta data: Katja Luther
09:42 AM bug #7614 (Closed): IndexOutOfBoundsException after deleting in bulkeditor: works fine now and the code seems to be correct. Katja Luther
09:12 AM feature request #7652 (New): add possibility to delete only the taxon node and keep the taxon in taxon navigator: Katja Luther

08/13/2018

11:02 PM task #7651 (New): RegistrationManager implemented: The commit:6ed17427 which was made for #7622 contains business logic which was placed in the RegistrationService for ... Andreas Kohlbecker
10:57 PM task #7650 (New): RegistrationFactory implemented: The commit:6ed17427 which was made for #7622 contains factory methods (at least one) which were placed in the Registr... Andreas Kohlbecker
07:21 PM bug #7622: RegistrationWorkingsetEditor: navigating to other pages with fresh registrations leaves empty registrations in the system: Updating the subject to better reflect the cause Andreas Kohlbecker
05:21 PM feature request #6682: Formatter and DTO for taxon relationships (e.g. misapplied names): This should rather be a formatter for concept relations and a new DTO service in remote. Andreas Müller
04:34 PM bug #7649 (Closed): Term editor loads/saves extremely slow: Walter:
"Der Term Editor braucht extrem lange, um aufzugehen – macht nichts, aber könnte ja sein, dass da etwas n... Patrick Plitzner
04:31 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: Patrick Plitzner wrote:
> Andreas Müller wrote:
> > when testing a couple of times I got an EagerLoadingException c... Andreas Müller
04:20 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: Andreas Müller wrote:
> when testing a couple of times I got an EagerLoadingException caused by an NoHttpResponseExc... Patrick Plitzner
03:26 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: Andreas Müller wrote:
> When running a search and stopping it by running a new search the results of the first searc... Patrick Plitzner
04:30 PM bug #7614 (Resolved): IndexOutOfBoundsException after deleting in bulkeditor: Patrick Plitzner
04:29 PM bug #7614: IndexOutOfBoundsException after deleting in bulkeditor: There are cases when -1 is returned as the current row index. This is now caught before getting the element at the in... Patrick Plitzner
04:05 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis": Also an issue for Nepenthes ampullaria
http://caryophyllales.org/nepenthaceae/cdm_api/proxy/http%253A%252F%252Fap... Andreas Müller
01:33 PM bug #7555 (Resolved): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis": please review Andreas Kohlbecker
01:32 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis": fixed in commit:0d70754 Andreas Kohlbecker
01:29 PM bug #7555: TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis": also reported by walter
http://caryophyllales.org/nepenthaceae/cdm_api/proxy/http%253A%252F%252Fapi.cybertaxono... Andreas Kohlbecker
03:20 PM feature request #7648 (Resolved): Create taxonrelation to genus or species when subordinate names are created: When creating a species a new Taxon needs to be created for this species and the new taxon needs to be related to the... Andreas Kohlbecker
02:28 PM feature request #7506 (Duplicate): Allow direct editing bulk editor: Patrick Plitzner
02:27 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor: Andreas Müller wrote:
> The following comment was missing when the ticket was copied from #7439: "Additionally offer... Patrick Plitzner
01:17 PM feature request #4383: multiple issues with de-duplication of references in bibliography: Same or similar problem reported by Walter:
bei http://caryophyllales.org/nepenthaceae/cdm_dataportal/taxon/463255... Andreas Kohlbecker
01:09 PM task #3249 (Duplicate): [DISCUSS] Free text search for specimen details: this seems like a duplicate of #3223
The requirement details given in this issue are very campanula secific and co... Andreas Kohlbecker
01:04 PM bug #7645 (Closed): specimen admin preferences are not saved: works now Andreas Müller
09:53 AM bug #7645: specimen admin preferences are not saved: Applied in changeset commit:taxeditor|3935afdf45ef9ddc44850fab61cf53ba79125643. Katja Luther
09:45 AM bug #7645 (Resolved): specimen admin preferences are not saved: Andreas Müller
09:13 AM bug #7645 (Closed): specimen admin preferences are not saved: The specimen admin preferences are not in the database after clicking apply or OK. Katja Luther
01:03 PM bug #7647 (Resolved): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in details view: Katja Luther
01:02 PM bug #7647 (Closed): accepted taxa also used as MAN or Pro Parte Synonym are displayed as MAN in details view: Katja Luther
12:47 PM bug #6289: “Back to images” link as “Back to taxon page” when in table-less mode: Fixing this should be easy and quickly. Andreas Kohlbecker
11:58 AM feature request #6677: Add "hort." flag to Botanical names: AM:
ok, das heißt, hort. könnte eigentlich an allen 4 Stellen stehen (Kombinations- und Ex-Author, sowie auch als ... Andreas Müller
11:51 AM feature request #6677: Add "hort." flag to Botanical names: WGB:
im Stearn (4ed, 355) wird die Abkürzung „hort.“ als „hortorum, of gardens; hortulanorum, of gardeners“ defini... Andreas Müller
10:43 AM feature request #6677: Add "hort." flag to Botanical names: AM:
Hallo Walter,
ich glaube im Zuge des Nepenthes Imports bin ich irgendwann mal auf die Abkürzung „hort.“ ges... Andreas Müller
10:38 AM feature request #7646 (Closed): Implement parser and formatter for "hort.": as soon as #6677 is implemented Andreas Müller
09:51 AM feature request #7419 (Closed): Provide example NormalImplicit import file for phycobank higher taxon graph imports: I think we can close this ticket. Andreas Müller
09:30 AM feature request #7419: Provide example NormalImplicit import file for phycobank higher taxon graph imports: Why did you pass this issue to me? From reading the comments I got the impression that this issue is completed. I thi... Andreas Kohlbecker

08/10/2018

09:41 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: Also got an NPE when deleting (and saving the delete) of a Reference. Maybe this is also related to parallel loading?... Andreas Müller
09:21 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: Reloading after save and setting selection after save if selection is one of the later records in a huge dataset is s... Andreas Müller
09:17 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: In name bulk editor changing e.g. specific epithet does NOT change the labels for "Name" and "Scientific name" and al... Andreas Müller
09:07 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: when testing a couple of times I got an EagerLoadingException caused by an NoHttpResponseException. May the test serv... Andreas Müller
08:33 PM feature request #6321 (Feedback): Implement parallel loading + progress bar for loading objects into the bulk editor: When running a search and stopping it by running a new search the results of the first search are still (partly) avai... Andreas Müller
08:18 PM feature request #7429 (Closed): Improve parsing and formatting for VerbatimTimePeriod: Andreas Müller
08:11 PM feature request #7506 (Feedback): Allow direct editing bulk editor: To me this seems to be a duplicate for #7503. Can you please double check and if you agree close ticket as duplicate ... Andreas Müller
08:01 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor: The following comment was missing when the ticket was copied from #7439: "Additionally offering tooltips saying that ... Andreas Müller
07:56 PM feature request #7518: remaining issues for usage of NatTable for bulkeditor: By the way, once we have >3 columns we will need horizontal scrolling anyway. So maybe this can already be implemente... Andreas Müller
07:49 PM feature request #7518 (Feedback): remaining issues for usage of NatTable for bulkeditor: * possibility to copy from a cell content
* this works now except for the fact that in editing mode the right cli... Andreas Müller
07:27 PM bug #7544 (Closed): Dragging a misapplication onto itself throws an exception in name editor: Disabling d&d seems to work. Advanced features copied to #7609 so we can close this ticket. Andreas Müller
07:15 PM bug #7603 (Closed): Changing a user group does not work as expected: As far as I understand the ticket this is fully fixed. Andreas Müller
02:27 PM task #7420: Import for higher taxon graph for phycobank: Andreas Müller wrote:
> What should be done with existing IAPT data. Should they be adapted to the new data model?
... Andreas Müller
02:23 PM task #7420: Import for higher taxon graph for phycobank: What should be done with existing IAPT data. Should they be adapted to the new data model? Andreas Müller
02:07 PM task #7420 (In Progress): Import for higher taxon graph for phycobank: First version of import is ready and tested with Frey and WoRMS data running into empty local database.
Next step:... Andreas Müller
02:03 PM feature request #7419 (Resolved): Provide example NormalImplicit import file for phycobank higher taxon graph imports: Wolf-Henning Kusber wrote:
> prefered: use a single excel sheet per classification
great, makes it easier Andreas Müller

08/09/2018

01:09 PM feature request #7419: Provide example NormalImplicit import file for phycobank higher taxon graph imports: prefered: use a single excel sheet per classification Wolf-Henning Kusber
01:02 PM feature request #7419 (Feedback): Provide example NormalImplicit import file for phycobank higher taxon graph imports: There seems to be an open issue: As we decided to create a classification for each reference and create a new taxon p... Andreas Müller
11:10 AM feature request #7419 (Resolved): Provide example NormalImplicit import file for phycobank higher taxon graph imports: As we have decided on the format and an example file exists as attachement to #7420 I think we can close this ticket. Andreas Müller
11:07 AM feature request #7643 (Feedback): cdmlight export: for bibliographic short citation use the freetext of the date as default: Andreas Müller
11:07 AM feature request #7643: cdmlight export: for bibliographic short citation use the freetext of the date as default: This will throw an NPE if datePublished does not exist!!
Also it is a bit dangerous as freetext in some cases may ... Andreas Müller
10:20 AM feature request #7643 (Resolved): cdmlight export: for bibliographic short citation use the freetext of the date as default: Katja Luther
10:19 AM feature request #7643 (Closed): cdmlight export: for bibliographic short citation use the freetext of the date as default: mail of WB:
noch ein Problemchen mit dem Output:
Nepenthes Datenbank – Da habe ich die folgende Referenz:
sieh... Katja Luther
11:03 AM feature request #7644 (Closed): Add "continued" flag to (Verbatim)Timeperiod: ... to indicate that a reference (usually a database) is continously edited and has no end date (yet).
E.g. Berend... Andreas Müller
10:44 AM task #7420: Import for higher taxon graph for phycobank: Please save future versions of the excel file in the current .xslx format, .xls is outdated. Andreas Müller
01:22 AM feature request #7640: Update ISO country names where necessary: This is not related to vaadin but a general cdm issue.
There are a couple of issues related to ISO 3166, many of t... Andreas Müller

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