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From 06/18/2018 to 07/17/2018

07/17/2018

09:28 PM bug #7558 (Resolved): IllegalStateException: Multiple representations ... when saving first typeDesignation for nameless Registration
Andreas Kohlbecker
05:41 PM bug #7558 (Duplicate): IllegalStateException: Multiple representations ... when saving first typeDesignation for nameless Registration
New Registration -> new reference -> with rerenceType mit team (first autor + empty second) -> save -> reopen add fu... Andreas Kohlbecker
09:26 PM Revision 9399c5ec (cdm-vaadin): ref #7558 clearing the hibernate session after exceptions and closing it after any use to avoid dirty sessions dangling around
Andreas Kohlbecker
05:45 PM bug #7559 (Closed): possibly corrupted hiberante session after previous error on saving editor

this error has possibly been caused by the error documented in #7558
~~~
Jul 17, 2018 4:49:21 PM com.vaadin.s...
Andreas Kohlbecker
05:31 PM bug #7557 (Closed): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a sub popup editor
potentially caused by the same bug as #7574
from the stacktrace it is not clear which popup editor was being saved...
Andreas Kohlbecker
04:44 PM Revision e0d3e148 (cdm-dataportal): ref #7495 basic version of reference page implemented
Andreas Kohlbecker
04:27 PM Revision b517c9e7 (cdm-dataportal): removing useless theme mehod theme_cdm_specimen()
Andreas Kohlbecker
03:48 PM Revision 302af519 (taxeditor): Implement QuantitativeData cell editor prototypes
Patrick Plitzner
03:47 PM Revision 3a6e3f9e (taxeditor): ref #7549 Show chart for quantitative values
Patrick Plitzner
02:42 PM Revision a39a62de (taxeditor): i18n
Patrick Plitzner
02:33 PM Revision f87588d3 (taxeditor): Fix potential NPE
Patrick Plitzner
02:22 PM Revision 6789eff8 (cdm-dataportal): harmonizing search result rendering and theming
Andreas Kohlbecker
01:32 PM Revision 0a1dc066 (cdm-dataportal): harmonizing search method names
Andreas Kohlbecker
01:30 PM Revision 24797d7f (cdm-dataportal): removing unused code and harmonizing search method names
Andreas Kohlbecker
01:02 PM feature request #7494 (Resolved): RegistrationSearch implemented
Applied in changeset commit:cdm-dataportal|a6ae799bf137d61817db96bd5b32bdeed480e09e. Andreas Kohlbecker
01:02 PM Revision a6ae799b (cdm-dataportal): fix #7494 registration search form block and result page
Andreas Kohlbecker
12:35 PM bug #7552 (Closed): use TaggedText.entityReference to add style and uuid to html tags
Andreas Kohlbecker
12:35 PM bug #7552 (Resolved): use TaggedText.entityReference to add style and uuid to html tags
Applied in changeset commit:cdm-dataportal|55083981158955cd614c2c59cb4d965581686160. Andreas Kohlbecker
12:35 PM Revision 55083981 (cdm-dataportal): fix #7552 rendering TaggedText.entityReference information as class attribute
Andreas Kohlbecker
11:03 AM bug #7554 (In Progress): TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state
The bug obviously still exists when a Person is added to an existing team. Andreas Kohlbecker
07:15 AM bug #7554: TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state
Hallo Henning,
ich befürchte der Test-Server war noch nicht auf dem neuesten Stand als du getestet hattest. BItte ...
Andreas Kohlbecker
09:54 AM Revision 64a68019 (taxeditor): ref #7549 Change format of quantitative label
Patrick Plitzner
09:42 AM feature request #7217: SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats
Known minor point:
On my computer, decimal values are only accepted if a Komma is used. A full stop is ignored by th...
Wolf-Henning Kusber

07/16/2018

09:00 PM bug #7555 (Closed): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"

the request:
http://api.cybertaxonomy.org/cichorieae/portal/taxon/find.json?doTaxaByCommonNames=1&doMisapplie...
Andreas Kohlbecker
04:33 PM bug #7554: TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state
Problem solved, but not very user-friendly.
http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registrat...
Wolf-Henning Kusber
04:07 PM bug #7554: TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state
Problems solved, please test. Andreas Kohlbecker
04:06 PM bug #7554 (Resolved): TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state
Applied in changeset commit:cdm-vaadin|1fef72149b63a405d436e3174ca513c3e961275b. Andreas Kohlbecker
03:57 PM bug #7554 (Closed): TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state

habe ein Problem mit einem neuen Autorenteam in der Section.
Workingset: http://test.e-taxonomy.eu/cdmserver/phyco...
Andreas Kohlbecker
04:33 PM Revision 8938d9a0 (cdm-dataportal): method doc
Andreas Kohlbecker
04:06 PM Revision 1fef7214 (cdm-vaadin): fix #7554 resetting nested components readonly states when setting new team or person instance
Andreas Kohlbecker
03:26 PM task #7550: Move UserHelper from cdm-vaadin into cdmlib
can be closed if the changes are not again causing any obvious errors Andreas Kohlbecker
02:49 PM task #7550: Move UserHelper from cdm-vaadin into cdmlib
The `VaadinUserHelper` which was registering itself in the vaadin session was causing problems in the cdm-webapp.war ... Andreas Kohlbecker
02:57 PM Revision 587dbb82 (cdmlib): ref #7550 pluggable Role tests for the UserHelper
Andreas Kohlbecker
02:51 PM Revision 320ad9d6 (cdm-vaadin): ref #7550 replacing the selfregisration of the VaadinUserHelper to the vaadin session by a UserHelperAccess bean
Andreas Kohlbecker
12:06 PM Revision f6205f4c (taxeditor): Fix frozen layer when toggling tree/list view
Patrick Plitzner
11:20 AM Revision 49df31fc (taxeditor): Add loading label to character matrix
Patrick Plitzner
09:38 AM Revision daf4e2c3 (taxeditor): ref #7549 Change format of frequency count in tooltip
Patrick Plitzner

07/13/2018

02:54 PM Revision 59fd2600 (taxeditor): Fix potential NumberFormatException in quant data cell editor
Patrick Plitzner
02:52 PM Revision d05bf8bd (taxeditor): ref #7549 Add quant statistic tooltip to character matrix
Patrick Plitzner
01:56 PM Revision e2e88c52 (taxeditor): ref #7549 Rename categorical tooltip class
Patrick Plitzner
01:24 PM Revision eb71aa23 (taxeditor): ref #7549 Add quant statistic map to character matrix
Patrick Plitzner
01:22 PM Revision c0abdb1d (taxeditor): Fix potential NPE when saving
Patrick Plitzner
01:09 PM Revision 6eb9a868 (cdmlib): ref #7348 preliminar swagger documentation on RegistrationDTOController and RegistrationController
Andreas Kohlbecker
12:37 PM Revision 60f27ea9 (cdm-vaadin): ref #7348 implementing find service for registrations with user, typeDesignationStatus, registrationStatus, identifier and taxonname filters
Andreas Kohlbecker
12:36 PM Revision bca2429d (cdmlib): ref #7348 implementing find service for registrations with user, typeDesignationStatus, registrationStatus, identifier and taxonname filters
Andreas Kohlbecker
12:23 PM Revision 998e1b74 (cdm-server): setting java code level to 1.8 and removing attribute fom launcher
Andreas Kohlbecker
10:20 AM Revision bd5a558a (taxeditor): ref #7549 Refactoring
Patrick Plitzner
08:32 AM Revision a3a12095 (taxeditor): ref #7549 Add/use apache common math for frequency distribution
Patrick Plitzner
07:57 AM Revision 727a2e1a (cdmlib): ref #7348 typeDesignations as non bean property to supress it for RegistrationDTO serializations
Andreas Kohlbecker
07:51 AM Revision 2c2458d7 (cdm-vaadin): adapting TypeDesignationSetManagerIT to changes in TypeDesignationSetManager
Andreas Kohlbecker
07:41 AM Revision 6d3bedb0 (taxeditor): ref #7549 Fix layout
Patrick Plitzner
07:41 AM Revision 7a8baaba (taxeditor): ref #7549 Code refactoring
Patrick Plitzner

07/12/2018

10:26 PM feature request #7348: RegistrationDTO webservices implemented
**TODO:**
remove the following fields from DTO Serialization:
* `typeDesignations`
* `orderdTypeDesignationWo...
Andreas Kohlbecker
10:23 PM task #7527: CdmEntityDaoBase.*ByParam() public and also available in the service layer
please review.
Andreas Kohlbecker
10:19 PM task #7550 (Resolved): Move UserHelper from cdm-vaadin into cdmlib
close if the changes are not causing any obvious errors Andreas Kohlbecker
02:15 PM task #7550 (Closed): Move UserHelper from cdm-vaadin into cdmlib
The `AbstractController` already duplicates some of the methods offered by the UserHelper. The UserHelper for now is... Andreas Kohlbecker
10:13 PM Revision 0240f48b (cdm-vaadin): ref #7550 adding CdmUserHelper to test application context
Andreas Kohlbecker
10:11 PM Revision 050137a3 (cdmlib): ref #7348 TypeDesignationSetManager provides TaggedText representation
Andreas Kohlbecker
09:17 PM Revision 93d11c3e (cdmlib): removing bug which was introduced in 7dcfc77
Andreas Kohlbecker
05:44 PM task #7553 (Closed): move TypeDesignationSetManagerIT to cdmlib
the `TypeDesignationSetManager` has been moved (#7348, commit:6e858cb7) to cdmlib but the according test still reside... Andreas Kohlbecker
05:40 PM Revision 41556e03 (cdm-vaadin): ref #7552 adapting cdm-vaadin to TypedEntityReference now being in other package
Andreas Kohlbecker
05:31 PM Revision 09f4db2f (cdmlib): ref #7552 adding TypedEntityReference data to TaggedText
Andreas Kohlbecker
05:31 PM bug #7552 (Closed): use TaggedText.entityReference to add style and uuid to html tags
TaggedText as provided by the cdmlib not provides TypedEntityReference information in the property TaggedText.entityR... Andreas Kohlbecker
05:13 PM Revision 7dcfc771 (cdmlib): removing almost unused type check methods from TaggedText
Andreas Kohlbecker
05:06 PM feature request #7551 (Closed): TypeDesignationSetManager provides summary as TaggedText
TypeDesignationSetManager can provide a summary of the ordered type designations. For the dataportal the summary shou... Andreas Kohlbecker
04:58 PM feature request #6967 (Resolved): RegistrationController identifier endpoints implemented
Applied in changeset commit:cdmlib|f9bb9711ec4265c5862d4616477c24fc9a16fa2f. Andreas Kohlbecker
04:56 PM feature request #6967: RegistrationController identifier endpoints implemented
the endpoint `/registration/{localID}` is not needed, is it? Andreas Kohlbecker
04:58 PM Revision f9bb9711 (cdmlib): fix #6967 implementing registration/identifier endpoints for domain entity and DTO api
Andreas Kohlbecker
04:58 PM Revision 42171057 (cdmlib): typo
Andreas Kohlbecker
04:58 PM Revision d2e6ea3e (cdmlib): ref #7527 adding missing @Transactional to new service methods
Andreas Kohlbecker
04:58 PM Revision cb3d5203 (cdmlib): ref #7550 relaxing bean dependencies for tests without security context
Andreas Kohlbecker
04:58 PM Revision 36476e4c (cdmlib): ref #7550 adding CdmUserHelper and interfaces in cdmlib (commit also contains a new conroller helper method)
Andreas Kohlbecker
04:42 PM Revision 391e9f07 (taxeditor): ref #7549 Add toggle button for tooltips
Patrick Plitzner
03:17 PM Revision 96aadc03 (taxeditor): Fix refresh problem after toggling list/tree view
Patrick Plitzner
03:16 PM Revision 1d11c7f6 (taxeditor): Fix potential ClassCastException
Patrick Plitzner
02:43 PM Revision 39939f0e (cdm-vaadin): ref #6967 moving RegistrationWorkingSetService to cdmlib
Andreas Kohlbecker
02:41 PM Revision a2728ed2 (cdm-vaadin): ref #7550 moving the actual CdmUserHelper to cdmlib and making it available in cdm-vaadin by extending the UserHelper class and interface hierarchy
Andreas Kohlbecker
02:40 PM Revision 37f70555 (cdm-vaadin): ref #7550 moving the actual CdmUserHelper to cdmlib and making it available in cdm-vaadin by extending the UserHelper class and interface hierarchy
Andreas Kohlbecker
02:07 PM task #7546: Better guidance for users when creating registrations for exising names
Dieser 2. Satz ist vielleicht wirklich überflüssig, er beleuchtet lediglich die Hintergünde zu Satz 1.
Ok, streich...
Andreas Kohlbecker
01:48 PM task #7546: Better guidance for users when creating registrations for exising names
Brauchen wir alle 3 Sätze. Der 2. ist schwer verständlich. Bin alles mit unserer native Speakerin durchgegangen. Ihr ... Wolf-Henning Kusber
12:46 PM Revision 40cce442 (cdmlib): Specify return value for data value
Patrick Plitzner
12:45 PM Revision 41883468 (taxeditor): ref #7549 Implement historgram tooltip for categorical data
Patrick Plitzner
12:39 PM feature request #7549 (Closed): Show tooltip for data aggregation in character matrix
When hovering over any cell of the summary row a tooltip should show up giving a brief statistical summary of the cur... Patrick Plitzner
10:16 AM feature request #7548 (In Progress): RegistrationWorkingSetEditor loads slowly with big working sets
The RegistrationWorkingSetEditor not only loads slowly when initially opened also when saving a popup editor the work... Andreas Kohlbecker
09:08 AM Revision f4028415 (taxeditor): Fix potential NPE
Patrick Plitzner

07/11/2018

06:02 PM Revision 9d35d224 (cdm-vaadin): fixing NPE in ToManyRelatedEntitiesListSelect
Andreas Kohlbecker
03:47 PM task #7527 (Resolved): CdmEntityDaoBase.*ByParam() public and also available in the service layer
Applied in changeset commit:cdmlib|51ee66dc3a639019afbb58811e32c98e0f186b12. Andreas Kohlbecker
03:43 PM task #7527: CdmEntityDaoBase.*ByParam() public and also available in the service layer
... also `public Pager<T> page(Class<? extends T> clazz, String param, String queryString, MatchMode matchmode, List... Andreas Kohlbecker
03:04 PM task #7527 (In Progress): CdmEntityDaoBase.*ByParam() public and also available in the service layer
I implemented `public Pager<T> pageByRestrictions(Class<? extends T> clazz, String param, String queryString, MatchMo... Andreas Kohlbecker
03:47 PM Revision 86257e3b (cdmlib): ref #6967 implementing /registration/{identifier} in RegistrationController
Andreas Kohlbecker
03:46 PM Revision 51ee66dc (cdmlib): fix #7527 making page by parameter with criteria and restrictions available in the service layer
Andreas Kohlbecker
02:30 PM Revision 1a836a82 (cdm-vaadin): readonly notification in editors
Andreas Kohlbecker
01:31 PM bug #7547 (Closed): ToManyRelatedEntitiesComboboxSelect buttons enabled even if the containig editor is readOnly
fixed! Andreas Kohlbecker
01:31 PM bug #7547 (Resolved): ToManyRelatedEntitiesComboboxSelect buttons enabled even if the containig editor is readOnly
Applied in changeset commit:cdm-vaadin|8a1add900f82f756d5df22205144a50b0deca0cb. Andreas Kohlbecker
01:13 PM bug #7547 (Closed): ToManyRelatedEntitiesComboboxSelect buttons enabled even if the containig editor is readOnly
see this screenshot for example:
![](picture507-1.png)
Andreas Kohlbecker
01:31 PM Revision 8a1add90 (cdm-vaadin): fix #7547 ToManyRelatedEntitiesListSelect buttons adapt to component readonlystate
Andreas Kohlbecker
01:15 PM Revision 52ecbe10 (cdmlib): ref #7546 RegistrationIdentifierMinter can check for matching identifiers
Andreas Kohlbecker
01:07 PM task #7546: Better guidance for users when creating registrations for exising names
done and ready for review.
When reviewing please have extra critical eyeball on the text close to the bottom of t...
Andreas Kohlbecker
01:04 PM task #7546 (Resolved): Better guidance for users when creating registrations for exising names
Applied in changeset commit:cdm-vaadin|cf9c36f82e17e2f5fb613ef6132994544c523a81. Andreas Kohlbecker
11:56 AM task #7546 (In Progress): Better guidance for users when creating registrations for exising names
A dialog is not the best solution, adding the required ui elements to the footer section of the workingset editor is ... Andreas Kohlbecker
01:05 PM Revision 97ed6049 (taxeditor): ref #7509 Enhance aggregation dialog
Patrick Plitzner
01:04 PM Revision 72ad71d3 (cdm-vaadin): ref #7546 preventing from adding a second type only registration before the first one has a typification
Andreas Kohlbecker
01:03 PM Revision fe042ecb (taxeditor): ref #7509 Fix potential NPE
Patrick Plitzner
01:02 PM Revision 58d10253 (taxeditor): Add confirmDialog method for multiple dialog buttons
Patrick Plitzner
11:59 AM Revision cf9c36f8 (cdm-vaadin): fix #7546 implementing workflow for creating registrations for existing names:
- Label with explanations for users
- Select element offering to create registrations for name and types or for tape...
Andreas Kohlbecker

07/10/2018

06:41 PM Revision 1acb2d39 (taxeditor): ref #7509 Add "Aggregate" button to character matrix
- aggregation will create a description on the common parent taxon of
all taxa included in the descriptive data set O...
Patrick Plitzner
06:26 PM Revision c4606d40 (cdmlib): ref #7509 aggregate quant. and categorical data (simple concatenation)
Patrick Plitzner
05:32 PM bug #7545 (Closed): IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
perfekt! Wolf-Henning Kusber
04:39 PM bug #7545 (Resolved): IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Applied in changeset commit:cdm-vaadin|af8ec722535f95fcccdc5f4fd4562238987d300a. Andreas Kohlbecker
03:56 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
I reproduced this issue.
Duplicate cdm entities only exist after pressing the save button for the new typedesigna...
Andreas Kohlbecker
02:58 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
The aftereffects disappeared after restarting the cdm-remote instance. So these secondary problems where most probabl... Andreas Kohlbecker
02:30 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Hallo Henning,
durch den ersten Fehler wurde eine Registrierung erzeugt, die keine TypeDesignation hatte. Das sie ...
Andreas Kohlbecker
02:30 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Und wenn man nach diesem Identifier sucht gibt es auch eine Fehlermeldung [#!list/inProgress]:
~~~
java.lang.Null...
Andreas Kohlbecker
02:29 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Hallo,

nach dem Fehler, konnte ich keine neuen existierenden Namen auswählen (alter Fehler)
nach aus und einlogg...
Andreas Kohlbecker
02:29 PM bug #7545 (Closed): IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Henning reported this error which happened while creating a registration for the existing name *Rhopalodia hirudinifo... Andreas Kohlbecker
04:52 PM Revision 25bd222a (taxeditor): ref #7509 Add prototype aggregation function to character matrix
Patrick Plitzner
04:51 PM Revision da7cc762 (cdmlib): ref #7509 Adapt aggregation method parameter list
Patrick Plitzner
04:39 PM Revision af8ec722 (cdm-vaadin): fix #7545 loading typifiedName into cache to avoid multiple representation problems
Andreas Kohlbecker
03:46 PM bug #7331: AdvancedBeanInitializer fails to initialize properties of preinitialized beans in the graph in very special situations
Adding exported breakpoints from my eclipse which might help debugging this issue. Andreas Kohlbecker
03:37 PM bug #7523 (Rejected): RegistrationWorkingSetEditor: existing name combobox must only offer names which are not yet registered in phycobank
rejected in favor of #7546 Andreas Kohlbecker
12:04 PM bug #7523: RegistrationWorkingSetEditor: existing name combobox must only offer names which are not yet registered in phycobank
The above change has been applied after receiving the below email:
Hallo,

um vorgesehene Registrierungen (Ty...
Andreas Kohlbecker
03:35 PM task #7546 (Closed): Better guidance for users when creating registrations for exising names
The strategy followed in #7523 effectively blocks creating registrations for existing names, which makes not much sen... Andreas Kohlbecker
01:14 PM Revision 1b5e778c (cdmlib): ref #7509 Generalize method parameter to List
Patrick Plitzner
12:54 PM Revision 84482875 (cdmlib): Merge branch 'develop' into aggregation
# Conflicts:
# cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
Patrick Plitzner
12:07 PM feature request #7348 (In Progress): RegistrationDTO webservices implemented
Andreas Kohlbecker
11:55 AM Revision 3e1190d6 (cdm-vaadin): ref #7523 removing name filter again, since this is blocking the creation of pure typeDesignation registrations
Andreas Kohlbecker
11:16 AM Revision 587cdbe5 (taxeditor): Fix potential NPE and endless loop
Patrick Plitzner
11:15 AM bug #7544 (Closed): Dragging a misapplication onto itself throws an exception in name editor
When dragging and dropping a misapplication onto itself in the taxon name editor the following exception is thrown an... Patrick Plitzner
10:57 AM bug #7538: Concurrent editing transaction strategy: Taxon turned into synonym by other user prior to saving taxon which was modified in editor
This could also be related to the same problem of concurrent editing:
"...mal wieder ein hübscher kleiner Fehler b...
Patrick Plitzner
10:48 AM bug #7543 (New): Name Editor does not auto-scroll during dragging
Hallo,
bei langen Synonymlisten scrolled die Liste nicht nach oben, wenn man ein Synonym dem Namen oder einem ande...
Patrick Plitzner
10:42 AM bug #7542 (Closed): Move synonym of homotypical group to taxon does not move the homotypical group correctly
Hallo,
wir stoßen in neue Bug-Sphären vor.
Sophia hat versucht, im NameEditor die Reihenfolge der Synonyme zu k...
Patrick Plitzner
10:39 AM Revision 45649db0 (cdm-vaadin): enabling editing of registration identifiers
Andreas Kohlbecker
10:36 AM bug #7541 (Closed): Insufficient rights lead to missing focus in name editor
WGB:
wir haben angefangen die Iresines einzugeben. Auf Sophias Rechner traten dabei merkwürdige Fehler auf, und zw...
Patrick Plitzner
10:34 AM bug #7540 (New): RemoteAccessException when changing taxon to synonym in taxon navigator
"Hallo,
ich arbeite über Eduroam im Haus. Im Taxonomic Tree ändere ich den Status auf Synonym, dann langes Warten ...
Patrick Plitzner
10:31 AM bug #7539 (New): Synonym drag and drop sometimes does not refresh correctly
* one case is described in the parent ticket
* another case: "nach Synonym-Accepted Swap im NameEditor und anschließ...
Patrick Plitzner

07/09/2018

06:25 PM bug #7505 (Feedback): IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
@Andreas K.: Could you please test again if the multi rep exception still occurs? I re-enabled the parallel loading b... Patrick Plitzner
06:24 PM Revision 6fd99a64 (taxeditor): ref #7505 re-enable parallel loading for bulk editor
Patrick Plitzner
06:02 PM bug #7538 (New): Concurrent editing transaction strategy: Taxon turned into synonym by other user prior to saving taxon which was modified in editor
** Originally reported as:**
Liebes Edit-Team,
Manchmal erscheint dieser Fehler, wenn man nach Eingabe der Type...
Andreas Kohlbecker
05:56 PM Revision 92ec40db (taxeditor): Refactor character matrix
- code cleanup Patrick Plitzner
04:26 PM Revision bbed9d01 (taxeditor): Refactor character matrix
- unify summary row configs Patrick Plitzner
04:18 PM Revision c5a4b091 (taxeditor): Refactor character matrix
- extract cell selection config Patrick Plitzner
04:12 PM Revision f9df6d49 (taxeditor): Refactor character matrix
- extract column header config Patrick Plitzner
03:36 PM bug #7537 (Rejected): Taxeditor can not connect to restarted, added cdm instance
After adding and starting, stopping and restarting the new cdn-server instance cdm_phycobank_production on edit test,... Andreas Kohlbecker
03:15 PM Revision 5889f0c3 (taxeditor): Add small delay to description load job
Patrick Plitzner
03:06 PM Revision b9e727eb (cdm-vaadin): ref #7361 fixing update problem of editOrCreate button
Andreas Kohlbecker
02:37 PM bug #7361 (Feedback): Consistent UI concept for create, new, add, remove, delete, edit buttons
Henning,
what do you think?
Andreas
Andreas Kohlbecker
02:36 PM bug #7361: Consistent UI concept for create, new, add, remove, delete, edit buttons
Another UI concept:
* use add row and remove icons like: ![](picture79-1.png), ![](picture79-2.png) from (https:/...
Andreas Kohlbecker
02:27 PM bug #7361: Consistent UI concept for create, new, add, remove, delete, edit buttons
adding a screenshot of the more consistren UI with the new "create-new" icon:
![](picture29-1.png)
Andreas Kohlbecker
02:34 PM Revision dedec018 (taxeditor): Refactor character matrix
- extract data conversion config
- extract summary row config
Patrick Plitzner
02:11 PM Revision c500743f (taxeditor): Refactor character matrix + different color for taxon rows
Patrick Plitzner
01:57 PM Revision 3428ae9c (taxeditor): Refactor character matrix
- extract label accumulator Patrick Plitzner
01:15 PM Revision 7256d30f (cdm-vaadin): avoiding occational NPE in updateEditOrCreateButton()
Andreas Kohlbecker
01:10 PM Revision fb908fa3 (cdm-vaadin): ref #7361 icon 'create-new' modified
Andreas Kohlbecker
12:25 PM Revision c09732ba (cdm-vaadin): ref #7361 creating new icon 'create-new' & introducing ButtonFactory for harmonization of button creation
Andreas Kohlbecker
12:23 PM Revision ef4b0cab (cdm-vaadin): fixing NPE for selection of null Basionym
Andreas Kohlbecker
11:34 AM Revision f4928b93 (taxeditor): Updated style of character matrix
Patrick Plitzner
09:21 AM Revision 2c54db81 (taxeditor): Apply modern theme to CharacterMatrix
Patrick Plitzner
09:16 AM Revision f2e0fed4 (taxeditor): Refactor CharacterMatrix code
- extract bottom toolbar composite Patrick Plitzner
09:13 AM Revision 95272d6e (taxeditor): Refactor CharacterMatrix code
- extract toolbar composite Patrick Plitzner

07/06/2018

05:02 PM Revision afcdb95b (taxeditor): Extend troubleshooting (OpenJDK9 taxon navigator problem)
Patrick Plitzner
03:17 PM bug #7531 (Resolved): PermissionDeniedException on flushing registration with modified status even if the user has the required authority
Fixed by implementing solution 1)
@Andreas Müller: can you please review the changes in cdmlib?
Andreas Kohlbecker
03:14 PM Revision 9b0a65f5 (cdmlib): Merge branch 'feature/#7531' into develop
Andreas Kohlbecker
03:10 PM Revision 8f51ee96 (cdmlib): ref #7531 CdmPermissionEvaluator.hasPermission() wraps cdm entities in TargetEntityStates
Andreas Kohlbecker
02:32 PM Revision 99a498e7 (cdm-vaadin): ref #7534 fixing submitter filter for continue mode
Andreas Kohlbecker
02:28 PM Revision 56e9117c (cdmlib): ref #7531 RegistrationVoter evaluates previous state on Registration.status changes
Andreas Kohlbecker
02:01 PM Revision 96e043f8 (taxeditor): ref #7439 Split BulkEditorE4 in E4 part and Composite
- clean up code Patrick Plitzner
01:27 PM Revision 72ce5ca1 (cdmlib): ref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permission voting process
Andreas Kohlbecker
01:05 PM Revision 63a2e46c (taxeditor): ref #7439 Code refactoring
Patrick Plitzner
12:03 PM feature request #7518 (Resolved): remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner
12:02 PM Revision 6328df3b (taxeditor): ref #7518 Colorize deduplication rows + tooltip
Patrick Plitzner
11:59 AM bug #7535: TeamOrPersonField: remove OK button an select the chosen enitity immediately
implemented and ready for review Andreas Kohlbecker
08:27 AM bug #7535 (Resolved): TeamOrPersonField: remove OK button an select the chosen enitity immediately
Applied in changeset commit:cdm-vaadin|87bbccd430886b5a2b9c744e0dc018e7d6235920. Andreas Kohlbecker
08:02 AM bug #7535 (Closed): TeamOrPersonField: remove OK button an select the chosen enitity immediately

Henning:
Bei Auswahl eines Authors muss OK gedrückt werden, sonst wird eine leere Sektion gespeichert.
Vorschla...
Andreas Kohlbecker
11:58 AM Revision b7f9be76 (cdm-vaadin): fix #7535 TeamOrPersonField and PersonField without OK button - bugfix
Andreas Kohlbecker
08:27 AM Revision 87bbccd4 (cdm-vaadin): fix #7535 TeamOrPersonField and PersonField without OK button
Andreas Kohlbecker
08:06 AM Revision fd071f70 (cdm-vaadin): un-boxing
Andreas Kohlbecker

07/05/2018

09:40 PM bug #7534 (Closed): registration list filters preserved in session
Andreas Kohlbecker
09:38 PM bug #7534 (Resolved): registration list filters preserved in session
Applied in changeset commit:cdm-vaadin|1e6c448a39b44580362af902142a2af98cfadf2c. Andreas Kohlbecker
06:30 PM bug #7534: registration list filters preserved in session
storing this data in the session is faster to implement Andreas Kohlbecker
06:01 PM bug #7534 (Closed): registration list filters preserved in session
symptoms caused by this issue:
1. registration list pager loses filters when navigating to other page - critical
...
Andreas Kohlbecker
09:40 PM Revision 3c4acc0c (cdm-vaadin): hint on unselecting items in multiselect list
Andreas Kohlbecker
09:37 PM Revision b13dc53b (cdm-vaadin): fixing pager for last page
Andreas Kohlbecker
09:34 PM Revision 1e6c448a (cdm-vaadin): fix #7534 storing search filter settings in session
Andreas Kohlbecker
06:27 PM feature request #7518 (In Progress): remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner
06:26 PM Revision 112bb8fd (taxeditor): ref #7518 Adjust columns size
Patrick Plitzner
05:59 PM feature request #7533: add typeStatus filter to registration list
Ready for review Andreas Kohlbecker
05:57 PM feature request #7533: add typeStatus filter to registration list
there are a couple of old data sets with typeStatus = null, therefore I am adding the null as filter option Andreas Kohlbecker
05:22 PM feature request #7533 (Resolved): add typeStatus filter to registration list
Applied in changeset commit:cdm-vaadin|56432bdd018d92bebb99ecfdaeca8721d7927416. Andreas Kohlbecker
03:26 PM feature request #7533 (Closed): add typeStatus filter to registration list
The filter options in the registration list view should offer to filter by TypeDesignation.status:
The filter will...
Andreas Kohlbecker
05:55 PM Revision dcd8a4c1 (cdm-vaadin): ref #7533 typeStatus filter for registration list view - adding null option to filter
Andreas Kohlbecker
05:22 PM Revision 56432bdd (cdm-vaadin): fix #7533 typeStatus filter for registration list view
Andreas Kohlbecker
05:21 PM Revision 94263696 (cdmlib): ref #7533 RegistrationService with typeStatus filter
Andreas Kohlbecker
03:42 PM Revision 7e055a60 (cdmlib): renaming variable
Andreas Kohlbecker
02:14 PM bug #7531: PermissionDeniedException on flushing registration with modified status even if the user has the required authority
Solution 1) still looks like the best option we have. Andreas Kohlbecker
11:53 AM bug #7531 (In Progress): PermissionDeniedException on flushing registration with modified status even if the user has the required authority
Andreas Kohlbecker
02:11 PM Revision 1c47af77 (taxeditor): ref #7518 Adjust visibility of context menu items
Patrick Plitzner
02:11 PM Revision 212da61f (taxeditor): ref #7518 re-enable cell text selection (on double-click)
Patrick Plitzner
10:27 AM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
Andreas Müller wrote:
> shouldn't we close this as a kind of duplicate for #6321? With reverting #6321 this problem ...
Patrick Plitzner
08:56 AM Revision ead6f0f6 (cdm-vaadin): fixing problem with empty partials in RegistrationRequiredDataInserter
Andreas Kohlbecker
07:59 AM bug #7222: Phycobank UI improve labels
Andreas Kohlbecker wrote:
> [Answer by Walter]
>
> Also nur Namen ab der Rangstufe Genus sind „uninomials“, finde...
Andreas Kohlbecker
07:55 AM bug #7222: Phycobank UI improve labels
Hallo,

dann schließe ich mich gerne der allgemeinen Definition an. Habe es noch mal nachgelesen und Walter hat Re...
Andreas Kohlbecker
07:55 AM bug #7222: Phycobank UI improve labels
[Answer by Walter]
Hallo,
merkwürdig, da sind Henning und ich (und Nick Turland) nicht der gleichen Meinung:

...
Andreas Kohlbecker

07/04/2018

05:28 PM bug #7524 (Closed): TaxonNameEditor blocks entering new names for genera
Andreas Kohlbecker
05:25 PM bug #7524 (Worksforme): TaxonNameEditor blocks entering new names for genera
works :) Wolf-Henning Kusber
04:49 PM bug #7524 (In Progress): TaxonNameEditor blocks entering new names for genera
Solved and ready for the review. Andreas Kohlbecker
04:42 PM bug #7524 (Resolved): TaxonNameEditor blocks entering new names for genera
Applied in changeset commit:cdm-vaadin|9361ce643c9b449ce33d77973ffe7d6ff9fc80b5. Andreas Kohlbecker
03:29 PM bug #7524 (In Progress): TaxonNameEditor blocks entering new names for genera
Andreas Kohlbecker
04:53 PM feature request #4227: handle generated resources in eclipse workspace
Patrick and I decided that you will be the next tester. Andreas Kohlbecker
04:50 PM feature request #4227: handle generated resources in eclipse workspace
I tried the A+ strategy and it worked fine.
1. git checkout generated-resources
1. run `setup-project.sh`
1. Ins...
Patrick Plitzner
04:48 PM feature request #4227: handle generated resources in eclipse workspace
[Patrick has tested strategy A+, these are his results:]
* had to apply the `/cdmlib-parent/lifecycle-mapping-meta...
Andreas Kohlbecker
04:42 PM Revision 9361ce64 (cdm-vaadin): fix #7524 replacing uninomial field on rank change
Andreas Kohlbecker
03:24 PM bug #7385 (Closed): TaxonNameEditor adapt field visibility to rank
suggestion added to #7222#note-4 Andreas Kohlbecker
01:39 PM bug #7385: TaxonNameEditor adapt field visibility to rank
All is fine, except of one label:
Proposal: change "Infrageneric epithet" to "Infrageneric uninominal"
Reason: ...
Wolf-Henning Kusber
03:22 PM bug #7222 (Feedback): Phycobank UI improve labels
Henning suggested the following for the Name Editor:
* Proposal: change "Infrageneric epithet" to "Infrageneric un...
Andreas Kohlbecker
03:18 PM bug #7528: Allow changing the Registration status in the RegistrationWorkingsetEditor
This is now complete even if it is not yet possible for submitter to change the status due to the bug #7531. But this... Andreas Kohlbecker
03:06 PM bug #7528 (Resolved): Allow changing the Registration status in the RegistrationWorkingsetEditor
Applied in changeset commit:cdm-vaadin|725d1ff22626d3b584606a29756c4be7c750aca1. Andreas Kohlbecker
03:15 PM bug #7531 (Closed): PermissionDeniedException on flushing registration with modified status even if the user has the required authority
User with the Grantedauthority `REGISTRATION(PREPARATION).[UPDATE]{06649467-7c4f-4b8b-98e6-395e4d3af240}` changes th... Andreas Kohlbecker
03:06 PM Revision 725d1ff2 (cdm-vaadin): fix #7528 indroducing RegistrationStatusSelect to allow setting the status in the RegistrationWorkingsetEditor
Andreas Kohlbecker
03:04 PM Revision bfc37f02 (cdm-vaadin): adding method fo find cdmAuthorities in the autenticated user
Andreas Kohlbecker
03:03 PM Revision e84525a1 (cdm-vaadin): typo in method name
Andreas Kohlbecker
02:53 PM Revision 5ce3b66a (cdmlib): ref #7528 ref #6655 introducing RegistrationStatusTransitions to provide a matrix of allowed RegistrationStatus transitions
Andreas Kohlbecker
02:53 PM Revision 0d707542 (cdmlib): TeamAutoInitializer only loads members for Teams
Andreas Kohlbecker
02:53 PM Revision 5d585cce (cdmlib): removing unnecessary casts
Andreas Kohlbecker
02:53 PM Revision 4a93959c (cdmlib): java doc and formatting
Andreas Kohlbecker
01:58 PM feature request #7131 (Closed): Registrations ListView has pager to browse the whole result set
Perfekt! Wolf-Henning Kusber
01:09 PM Revision fb4c402b (taxeditor): setSelection in bulkeditor only if the model contains the selected object
Katja Luther
01:09 PM Revision 814cb7e1 (taxeditor): bulkeditor list comparator is set by bulkeditorinput.getTitleComparator
Katja Luther
01:09 PM Revision 2d912c1b (taxeditor): fix problem with titleCache comparator in user and group bulkeditor
Katja Luther
01:09 PM Revision 8da6ef3f (taxeditor): fix eexception in user and group bulk editor
Katja Luther
07:49 AM Revision 20878688 (cdm-vaadin): renaming RegistrationStateLabel to RegistrationStatusLabel
Andreas Kohlbecker

07/03/2018

06:25 PM Revision 5c3eea24 (cdm-vaadin): removing obsolete class TypeStateLabel
Andreas Kohlbecker
06:23 PM Revision 07fa0ede (cdm-vaadin): removing obsolete class RegistrationTypeConverter
Andreas Kohlbecker
06:21 PM bug #7528 (In Progress): Allow changing the Registration status in the RegistrationWorkingsetEditor
Andreas Kohlbecker
06:12 PM Revision 637becc5 (cdm-vaadin): ref #7331 using load instead of find to avoid the magic bug in the AdvancedBeaninitializer
Andreas Kohlbecker
06:00 PM feature request #7131: Registrations ListView has pager to browse the whole result set
Hi Henning,
the pager is ready, you can review this feature now.
Andreas
Andreas Kohlbecker
05:59 PM feature request #7131 (Resolved): Registrations ListView has pager to browse the whole result set
Applied in changeset commit:cdm-vaadin|1a4c1ca754f6e7d8ce2fb04adab9f14c226b24fc. Andreas Kohlbecker
05:59 PM Revision 1a4c1ca7 (cdm-vaadin): fix #7131 pager implemented and added to registration list view
Andreas Kohlbecker
03:49 PM Revision d8d3a36b (taxeditor): Merge branch 'hotfix/5.1.2'
jenkins
03:41 PM Revision fde7c010 (cdm-vaadin): ref #7523 fixing bug in CdmFilterablePagingProvider
Andreas Kohlbecker
12:33 PM Revision cfbac3ec (cdmlib): cleanup
Andreas Müller
12:23 PM Revision a7e57e62 (cdmlib): ref #7530 3 families and dianthus import (WFO Access Import)
Andreas Müller
12:04 PM feature request #4227: handle generated resources in eclipse workspace
Ich habe einen branch **generated-resources** committed in dem alle .classpath and .project files gelöscht sind: com... Andreas Kohlbecker
09:25 AM feature request #4227: handle generated resources in eclipse workspace
auch der Wechsel auf einen anderen Branch klappt mit diesem Setup problemlos:
1. start im develop branch
1. `gi...
Andreas Kohlbecker
09:13 AM feature request #4227: handle generated resources in eclipse workspace
Ich habe heute morgen noch eine radikalere Strategie getestet - Stratregie **A+**:
1. Projekt in Eclipse gelöscht,...
Andreas Kohlbecker
11:58 AM Revision 5cded95c (taxeditor): ref #4227 deleting all .classpath and .project files
Andreas Kohlbecker
11:22 AM task #7364 (Closed): TaxonNameEditor supports editing of a validated name
Wolf-Henning Kusber
11:16 AM bug #7387 (Closed): TaxonNamePopEditor: ConstraintViolationException on saving a basionym
Wolf-Henning Kusber
11:16 AM bug #7387 (Worksforme): TaxonNamePopEditor: ConstraintViolationException on saving a basionym
Wolf-Henning Kusber
11:07 AM Revision 0eaf479c (taxeditor): setSelection in bulkeditor only if the model contains the selected object
Katja Luther
10:36 AM Revision 62315c71 (taxeditor): cleanup
Andreas Müller
10:26 AM bug #7179 (Closed): Phycobank: set protectedTitleCaches = 1 where Person contains no data
finally fixed! All changes applied to the phycobank production database Andreas Kohlbecker
10:24 AM bug #7179: Phycobank: set protectedTitleCaches = 1 where Person contains no data
fixing protectedNomenclaturalTitleCache
~~~sql
UPDATE AgentBase a SET protectedNomenclaturalTitleCache = 1
...
Andreas Kohlbecker
10:22 AM bug #7179: Phycobank: set protectedTitleCaches = 1 where Person contains no data
fixing
~~~sql
UPDATE AgentBase a SET protectedCollectorTitleCache = 1
WHERE DTYPE = 'Person' AND a.givenNa...
Andreas Kohlbecker
10:10 AM bug #7179 (In Progress): Phycobank: set protectedTitleCaches = 1 where Person contains no data
This only has been fixed for protectedTitleCache. The flags protectedCollectorTitleCache and protectedNomenclaturalTi... Andreas Kohlbecker
09:44 AM bug #7529 (Closed): Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
The ROLE_PUBLISH was not yet in the database and thus was created using the Taxeditor GrantedAuthority Create Dialog.... Andreas Kohlbecker
08:40 AM Revision c3b22cae (taxeditor): ref #4227 eu.etaxonomy.taxeditor.cdmlib/.classpath.template
Andreas Kohlbecker

07/02/2018

11:01 PM feature request #4227: handle generated resources in eclipse workspace
Hiermit ist mein Monster-Feedback #4227#note-7 bis #4227#note-10 zu Ende.
und ich bin der Meinung, dass `eu.etaxon...
Andreas Kohlbecker
10:55 PM feature request #4227: handle generated resources in eclipse workspace
also nochmal die Strategie (A) mit m2 plugin aber ganz von vorn und unter Einbeziehung der bisherigen Erkentnisse:
...
Andreas Kohlbecker
10:31 PM feature request #4227: handle generated resources in eclipse workspace
... Mist ich hatte das "Set as Target Platform" vergessen, sonst hätte es wohl funktioniert, dies habe ich leider ers... Andreas Kohlbecker
09:58 PM feature request #4227: handle generated resources in eclipse workspace
... das Problem ist offenbar, dass eclipse die maven source folder nicht erkennt und und `eu.etaxonomy.taxeditor.cdml... Andreas Kohlbecker
09:41 PM feature request #4227: handle generated resources in eclipse workspace
1. Projekt in Eclipse gelöscht
1. git workspace komplett ge-cleant mit `git clean -x`
1. `rm eu.etaxonomy.taxeditor...
Andreas Kohlbecker
08:26 PM feature request #4227: handle generated resources in eclipse workspace
The only generated resources which still is causing a conflict after setting up the project in eclipse is the
~~~...
Andreas Kohlbecker
03:39 PM Revision a9fcc7a1 (taxeditor): bulkeditor list comparator is set by bulkeditorinput.getTitleComparator
Katja Luther
03:25 PM Revision ba5f20eb (taxeditor): fix problem with titleCache comparator in user and group bulkeditor
Katja Luther
03:12 PM Revision 68baf399 (taxeditor): Updated version in pom / project files to taxeditor version : 5.1.2 and cdmlib version : 5.1.0
jenkins
02:34 PM Revision 8a81795d (cdmlib): cleanup
Andreas Müller
01:53 PM bug #7528 (Closed): Allow changing the Registration status in the RegistrationWorkingsetEditor
* Submitters should be able to set the status to **Curation** or to **Rejected**
* Curators should have all status a...
Andreas Kohlbecker
12:57 PM feature request #7131 (In Progress): Registrations ListView has pager to browse the whole result set
Andreas Kohlbecker
12:51 PM bug #7523 (Resolved): RegistrationWorkingSetEditor: existing name combobox must only offer names which are not yet registered in phycobank
Applied in changeset commit:cdm-vaadin|cd993d9573144e244060321aee0c1fb28416a73f. Andreas Kohlbecker
12:51 PM Revision cd993d95 (cdm-vaadin): fix #7523 excluding taxon nams which are already published
Andreas Kohlbecker
12:50 PM Revision d01b74ef (cdmlib): ref #7525 ref #7523 allowing to use Restriction as exclude filter
Andreas Kohlbecker
12:27 PM Revision 40b02195 (taxeditor): Merge branch 'hotfix/5.1.1'
jenkins
12:20 PM Revision 200b0606 (taxeditor): fix eexception in user and group bulk editor
Katja Luther
12:06 PM Revision bcd18ba7 (taxeditor): Updated version in pom / project files to taxeditor version : 5.1.1 and cdmlib version : 5.1.0
jenkins
09:32 AM Revision 0c12e309 (cdm-vaadin): ref #7523 exteding CdmFilterablePagingProvider by Restrictions filter
Andreas Kohlbecker
09:13 AM Revision 024d9b21 (cdmlib): ref #7525 restoring all previously removed Criteria methods
Andreas Kohlbecker

07/01/2018

04:17 PM bug #7525: IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
Andreas Kohlbecker wrote:
> The methods with `List<Criterion> criteria` are offering a different type of flexibility...
Andreas Müller

06/29/2018

11:05 PM Revision d791337a (cdmlib): Revert "ref #7527 renaming CdmEntityDaoBase.*ByParam* methods"
This reverts commit 13ec97dbc071864563698e422a15ad725e28a55b. Andreas Kohlbecker
05:50 PM bug #7525: IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
The methods with `List<Criterion> criteria` are offering a different type of flexibility than those with `List<Restri... Andreas Kohlbecker
05:17 PM bug #7525 (Resolved): IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
Applied in changeset commit:cdmlib|a33babc0e0b88d6d8ee3968addd7f74bdaa14e93. Andreas Kohlbecker
05:27 PM task #7527 (Feedback): CdmEntityDaoBase.*ByParam() public and also available in the service layer
Hi Andreas,
what do you think about exposing these methods to the public?
Andreas
Andreas Kohlbecker
05:26 PM task #7527: CdmEntityDaoBase.*ByParam() public and also available in the service layer
I renamed the methods so that the more general an versatile methods have the shorter name. Andreas Kohlbecker
05:15 PM task #7527 (Closed): CdmEntityDaoBase.*ByParam() public and also available in the service layer
The methods
* `CdmEntityDaoBase.countBy(Class<? extends T> clazz, String param, String queryString, MatchMode matc...
Andreas Kohlbecker
05:24 PM Revision 13ec97db (cdmlib): ref #7527 renaming CdmEntityDaoBase.*ByParam* methods
Andreas Kohlbecker
05:17 PM Revision a33babc0 (cdmlib): fix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle() methods
Andreas Kohlbecker
10:33 AM feature request #7517 (New): Make search parameters like wildcards configurable
no, this is purely a taxeditor ticket. The service layer already offers many of these configurations but they can't b... Andreas Müller
10:24 AM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
shouldn't we close this as a kind of duplicate for #6321? With reverting #6321 this problem was "solved" also as far ... Andreas Müller

06/28/2018

05:29 PM task #7526 (New): move IdentifiableDaoBase.findByReferenceTitle() into ReferenceDao
findByReferenceTitle() searches for "title" which only exists in `Reference.class` therefor it makes no sense having ... Andreas Kohlbecker
04:27 PM bug #6282: FSI image viewer not working with https
I am assuming that it will not be possible to make the http://media.bgbm.org/ available under https therefore I am se... Andreas Kohlbecker
04:18 PM bug #6282: FSI image viewer not working with https
This is most probably caused by binding the fsi viewer flash app via http instead of https:
~~~html
<div id="im...
Andreas Kohlbecker
02:46 PM feature request #7517 (Feedback): Make search parameters like wildcards configurable
I guess this is more a cdmlib issue than something to be implemented in the taxeditor. The service methods need to of... Andreas Kohlbecker
02:36 PM bug #7525 (In Progress): IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
Andreas Kohlbecker
02:36 PM bug #7525 (Closed): IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
The methods `findByTitle()` and `listByTitle()` in IdentifiableServiceBase offer `List<Criterion> criteria` as method... Andreas Kohlbecker
12:56 PM task #7274 (Closed): GrantedAuthorityRevokingRegistrationUpdateLister: add the exception handling for failing flush or commit
Andreas Kohlbecker
12:56 PM task #7274 (Resolved): GrantedAuthorityRevokingRegistrationUpdateLister: add the exception handling for failing flush or commit
Applied in changeset commit:cdm-vaadin|4235f40e55e53768f68611ba51dc00721455e92e. Andreas Kohlbecker
12:56 PM Revision 4235f40e (cdm-vaadin): fix #7274 GrantedAuthorityRevokingRegistrationUpdateLister: closing second session in case of hibernate exceptions and let them bubble up
Andreas Kohlbecker
12:56 PM Revision becb5ef0 (cdm-vaadin): documenting GrantedAuthorityRevokingRegistrationUpdateLister
Andreas Kohlbecker
12:17 PM bug #7524 (Closed): TaxonNameEditor blocks entering new names for genera
since the implementation of #7338 new genus names can not be entered. Andreas Kohlbecker
12:13 PM bug #7523 (Rejected): RegistrationWorkingSetEditor: existing name combobox must only offer names which are not yet registered in phycobank
The existing name combobox currently offers all names even those which are already registered.
The pager CdmFilterab...
Andreas Kohlbecker
12:06 PM bug #7522: Show warning if the someone has changed data in a registration graph which is not a currently authenticated curator when RegistrationState > PREPARATION
Hi Henning,
we should discuss if this is really a requirement for data consistency.
Andreas
Andreas Kohlbecker
12:06 PM bug #7522 (New): Show warning if the someone has changed data in a registration graph which is not a currently authenticated curator when RegistrationState > PREPARATION
For registrations check if the adjacent name or typedesignation entity graphs have been upated by another user since ... Andreas Kohlbecker
11:55 AM bug #7520: Restore GrantedAuthorities removed by GrantedAuthorityRevokingRegistrationUpdateLister when the regsitration state returns to PREPARATION
The next idea came up during a call with Andreas Müller:
The GrantedAuthorities are deleted as it is at the moment...
Andreas Kohlbecker
10:25 AM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
I guess something went wrong this morning with Redmine I only moved tickets which are "New" or in "Progress", when c... Andreas Kohlbecker
10:12 AM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Isn't this solved (more or less) in 5.1 already? Andreas Müller
10:25 AM feature request #3984 (Closed): Easier reference selection - recently used references
works fine Andreas Müller
09:07 AM feature request #3984 (Resolved): Easier reference selection - recently used references
now the last 6 references are shown in the selection dialog. Katja Luther
10:21 AM feature request #7508 (Closed): Add language information to term representations
This was an mistake, I guess we can close it now, don't you? Andreas Kohlbecker
10:11 AM feature request #7508: Add language information to term representations
This should be solved in 5.1. Why did you move it? Andreas Müller
10:05 AM task #5375: cdm-server without jsvc
next major release is not to be used anymore Andreas Müller
09:57 AM bug #4847: Problem with session attributes for a UI used in different CDM Instances
Fabian can you please have a look on this issue? Andreas Müller
09:01 AM feature request #7463 (Closed): Move taxonnodes should be available for multiple selection
Katja Luther
09:00 AM feature request #7463: Move taxonnodes should be available for multiple selection
we have to have a look why the refresh sometimes does not work, therefore I create a new ticket and close this one (s... Katja Luther
09:00 AM bug #7521 (Closed): refresh of taxonnavigator sometimes does not work for moving taxonnodes
this is a remaining issue of 'Move taxonnodes should be available for multiple selection' (#7463#note-29)
Andreas Mü...
Katja Luther
08:55 AM feature request #7281 (In Progress): Implement bromelian import
Katja Luther
08:10 AM task #4911: improve performance of distributionInfoFor service
Hi Andreas, I am passing this issue to you, since you are in the euro+med sprint, ähhh, long-distance run! Andreas Kohlbecker
12:02 AM bug #7092 (Resolved): Adapt dates in Nicks images after mediaCreated became TimePeriod
Andreas Müller

06/27/2018

10:51 PM Revision c20857dd (taxeditor): Merge branch 'release/5.1.0' into develop
jenkins
10:51 PM Revision 69c7e199 (taxeditor): Merge branch 'release/5.1.0'
jenkins
10:45 PM Revision 4cfefef3 (cdmlib-apps): cleanup
Andreas Müller
10:43 PM Revision 562007ff (cdmlib-apps): update cdmlib version to 5.2.0-SNAPSHOT
Andreas Müller
10:39 PM Revision c5704ba9 (taxeditor): cleanup classpath
Andreas Müller
10:33 PM Revision 5f060ab5 (taxeditor): cleanup
Andreas Müller
07:54 PM bug #7520: Restore GrantedAuthorities removed by GrantedAuthorityRevokingRegistrationUpdateLister when the regsitration state returns to PREPARATION
The first idea of preserving the authorities in an Extension is not applicable since neither Registration nor User ar... Andreas Kohlbecker
03:53 PM bug #7520 (New): Restore GrantedAuthorities removed by GrantedAuthorityRevokingRegistrationUpdateLister when the regsitration state returns to PREPARATION
Currently the `GrantedAuthorityRevokingRegistrationUpdateLister` withdraws GrantedAuthorities from the sumbitter when... Andreas Kohlbecker
05:40 PM Revision 76af4b13 (cdm-server): Merge branch 'release/5.1.0' into develop
jenkins
05:40 PM Revision 07760191 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:40 PM Revision 09202e3a (cdm-server): updating poms for branch'release/5.1.0' with non-snapshot versions
jenkins
05:39 PM Revision 88e8b782 (cdm-webapp): Merge branch 'release/5.1.0' into develop
jenkins
05:39 PM Revision ce66ea32 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:39 PM Revision 63f739db (cdm-webapp): updating poms for branch'release/5.1.0' with non-snapshot versions
jenkins
05:39 PM Revision 1a7024c4 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.1.0
jenkins
05:39 PM Revision 88b7c562 (cdm-vaadin): Merge branch 'release/5.1.0' into develop
jenkins
05:39 PM Revision dd81e4f7 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:35 PM Revision 43161ae2 (cdm-dataportal): Merge branch 'release/5.1.0' into develop
jenkins
05:35 PM Revision a42353a3 (cdm-dataportal): updating poms for branch'release/5.1.0' with non-snapshot versions
jenkins
05:35 PM Revision 77a4ad22 (cdm-vaadin): updating poms for branch'release/5.1.0' with non-snapshot versions
jenkins
05:35 PM Revision 74dcb4d4 (cdm-dataportal): release-preparation: production level css
jenkins
05:35 PM Revision be5bfc3b (cdm-vaadin): jenkins bumping cdmlib.version to 5.1.0
jenkins
04:02 PM Revision 03cebda7 (cdmlib): Updating develop poms back to pre merge state
jenkins
04:02 PM Revision 1d22a426 (cdmlib): Merge branch 'master' into develop
jenkins
04:02 PM Revision 051492e2 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
04:02 PM Revision 004a7a46 (cdmlib): Merge branch 'release/5.1.0'
jenkins
04:02 PM feature request #6655 (Rejected): Implement a RegistrationManager with state machine
Andreas Kohlbecker
03:43 PM Revision 3b7f3374 (cdmlib): updating poms for branch'release/5.1.0' with non-snapshot versions
jenkins
03:36 PM Revision 87f8bf77 (cdmlib): Updating develop poms back to pre merge state
jenkins
03:36 PM Revision 45b33b6c (cdmlib): Merge branch 'master' into develop
jenkins
03:36 PM Revision 2d6a53a9 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:36 PM Revision 7db37afb (cdmlib): Merge branch 'release/5.1.0'
jenkins
03:22 PM Revision a2127735 (cdmlib): updating poms for branch'release/5.1.0' with non-snapshot versions
jenkins
03:20 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Andreas Müller wrote:
> Partial synonyms are not yet shown by default (at least not for cichorieae on test)
This ...
Andreas Kohlbecker
02:50 PM Revision 586faa25 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.1.0-SNAPSHOT
jenkins
02:50 PM Revision 6854f19f (cdm-webapp): updating poms for 5.2.0-SNAPSHOT development
jenkins
02:50 PM Revision 5eecf8bd (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.2.0-SNAPSHOT
jenkins
02:49 PM Revision 6970c38f (cdm-server): updating poms for 5.2.0-SNAPSHOT development
jenkins
02:49 PM Revision 3eae339f (cdm-dataportal): updating poms for 5.2.0-SNAPSHOT development
jenkins
02:49 PM Revision b9231fd2 (taxeditor): Updated version in pom / project files to taxeditor version : 5.2.0-SNAPSHOT and cdmlib version : 5.2.0-SNAPSHOT
jenkins
02:49 PM Revision 9da34421 (taxeditor): Updated version in pom / project files to taxeditor version : 5.1.0 and cdmlib version : 5.1.0
jenkins
02:48 PM Revision 390b8d9e (cdm-vaadin): jenkins bumping cdmlib.version to 5.1.0-SNAPSHOT
jenkins
02:48 PM Revision 403adee5 (cdm-vaadin): updating poms for 5.2.0-SNAPSHOT development
jenkins
02:48 PM Revision 3e9ab1b7 (cdm-vaadin): jenkins bumping cdmlib.version to 5.2.0-SNAPSHOT
jenkins
02:45 PM Revision 15e3472f (cdmlib): updating poms for 5.2.0-SNAPSHOT development
jenkins
02:36 PM bug #7478 (Resolved): Fix pro parte synonym search
probably there are open issues that need to be moved to a new ticket. Andreas Müller
02:33 PM feature request #7517: Make search parameters like wildcards configurable
I strongly suggest creating a profound specification for this before anything is being implementing for this issue!
...
Andreas Kohlbecker
09:47 AM feature request #7517 (New): Make search parameters like wildcards configurable
For edaphobase users are used to use whitespace as wildcard.
We should make search parameters project and/or clien...
Andreas Müller
02:28 PM bug #7313 (Closed): eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
new ticket #7519 or remaining clean up.
I think wen can close this issue now. If you don't agree, Andreas, please ...
Andreas Kohlbecker
02:18 PM bug #7313: eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
Andreas Müller wrote:
> This should work.
>
> Personally I would first load/save the voc and then check the terms...
Andreas Kohlbecker
11:31 AM bug #7313 (Feedback): eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
This should work.
Personally I would first load/save the voc and then check the terms and add each term which is n...
Andreas Müller
02:26 PM bug #7519 (New): Avoid static terms
static terms defined in `KindOfUnitTerms` are directly used in other classes:
* RegistrationRequiredDataInserter...
Andreas Kohlbecker
02:17 PM Revision 84832a69 (taxeditor): set focus to search field when opening bulk editor
Katja Luther
02:15 PM Revision cb00dde8 (cdm-vaadin): ref #7313 creating vocabulary before terms
Andreas Kohlbecker
02:14 PM feature request #7439 (Closed): Use NatTable for BulkEditor
close this ticket and created a new one with remaining issues (#7518) Katja Luther
01:40 PM feature request #7439: Use NatTable for BulkEditor
The editing mode of the table caused a widget is disposed exception and no menu was shown.
I reverted these changes ...
Katja Luther
01:12 PM feature request #7439: Use NatTable for BulkEditor
Now, column resizing is disabled which is better then before. However, we should resize the table to window size at t... Andreas Müller
01:11 PM feature request #7439: Use NatTable for BulkEditor
Andreas Müller wrote:
> Using the standard right click menu is cumbersome as clicking on a column cell immediately c...
Andreas Müller
02:12 PM feature request #7518 (Closed): remaining issues for usage of NatTable for bulkeditor
* ~~editable cell content/possibility to copy from a cell content~~
* ~~size of the columns should not be 50/50, but...
Katja Luther
01:38 PM feature request #4101 (Closed): Default value for publish bit of new taxa must be configurable via DB preferences
Seems to work now. Andreas Müller
12:21 PM feature request #4101 (Resolved): Default value for publish bit of new taxa must be configurable via DB preferences
Katja Luther
12:20 PM feature request #4101 (Feedback): Default value for publish bit of new taxa must be configurable via DB preferences
Andreas Müller wrote:
> The preference is not stored in the DB. After reopening the preference view the publish flag...
Katja Luther
11:27 AM feature request #4101 (Resolved): Default value for publish bit of new taxa must be configurable via DB preferences
Katja Luther
01:35 PM Revision ceac293a (taxeditor): revert edit of text in bulkeditor and resize of columns
Katja Luther
12:20 PM Revision 0dfdf125 (taxeditor): fix refresh details view for concept relationship changes in name editor
Katja Luther
11:01 AM Revision db9784f5 (taxeditor): fix correct icon refresh for concept relationship changes in name editor
Katja Luther
11:00 AM Revision 7f518e8a (taxeditor): add publish flag to newTaxonNodeWizard
Katja Luther
10:46 AM feature request #4363 (Feedback): Show more informative message for unsupported specimen structures in specimen bulk editor
Patrick Plitzner wrote:
> Now, a more informative message is shown. The text is generated in the DerivedUnitFacade c...
Andreas Müller
10:18 AM Revision c416d097 (taxeditor): fix #7227: remove marker menu in bulkeditor when nothing is selected
Katja Luther
09:21 AM bug #7227 (Worksforme): New name bulk editor shows all menu entries
We can close this ticket because with the NatTable implementation this problem does not exist anymore. Katja Luther
09:19 AM Revision c66e6cf5 (taxeditor): ref #4101: correct setting of values in publish flag wizard
Katja Luther
09:18 AM Revision 3527ae92 (cdmlib): fix NPE in toString of Abcd206ImportConfigurator
Katja Luther

06/26/2018

08:28 PM Revision 72966fb1 (cdm-vaadin): fixing broken test dataset
Andreas Kohlbecker
06:05 PM Revision 1b767585 (cdm-vaadin): typo
Andreas Kohlbecker
05:58 PM feature request #4101: Default value for publish bit of new taxa must be configurable via DB preferences
Andreas Müller wrote:
> We may also want to show the new publish flag value in the "new taxon" dialog. But this migh...
Andreas Müller
05:56 PM feature request #4101 (Feedback): Default value for publish bit of new taxa must be configurable via DB preferences
The preference is not stored in the DB. After reopening the preference view the publish flag option is still not set. Andreas Müller
04:20 PM feature request #4101 (Resolved): Default value for publish bit of new taxa must be configurable via DB preferences
Katja Luther
04:20 PM feature request #4101 (Feedback): Default value for publish bit of new taxa must be configurable via DB preferences
Andreas Müller wrote:
> When trying to save I got:
>
> ~~~
> login : admin
> editor version : 5.1.0.20180619145...
Katja Luther
04:11 PM feature request #4101 (Resolved): Default value for publish bit of new taxa must be configurable via DB preferences
Applied in changeset commit:taxeditor|8360c0ff2bbc09ed93a487bd5e7451f197785edf. Katja Luther
05:38 PM bug #7227 (Feedback): New name bulk editor shows all menu entries
Do I understand correctly that the "Set marker" menu item appears due to #7516? If this is the case then we can close... Andreas Müller
04:38 PM bug #7227 (Resolved): New name bulk editor shows all menu entries
create a new ticket for the correct handling of details view, if no entity is selected and close this ticket. (see #7... Katja Luther
05:26 PM feature request #7463 (Feedback): Move taxonnodes should be available for multiple selection
Andreas Müller wrote:
> The refresh issue still exists and is critical. It seems to happen with large subtrees. E.g....
Andreas Müller
04:34 PM feature request #7463 (Resolved): Move taxonnodes should be available for multiple selection
now there are two subtasks: moving taxa and saving/reindexing, showing more subtasks are not really possible. please ... Katja Luther
05:12 PM feature request #7464 (Closed): make move Taxonnodes a longrunning task
Seems to be fully implemented. Andreas Müller
04:26 PM feature request #7464 (Resolved): make move Taxonnodes a longrunning task
this should be fixed now, please review Katja Luther
05:10 PM Revision 9f42f4d1 (taxeditor): revert cleanup
Andreas Müller
04:58 PM Revision c508431a (taxeditor): cleanup
Andreas Müller
04:38 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Andreas Müller wrote:
> The symbols are still used in incorrect direction. On the side of the "real" taxon (which ta...
Andreas Müller
04:31 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Partial synonyms are not yet shown by default (at least not for cichorieae on test) Andreas Müller
04:30 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Andreas Kohlbecker wrote:
> this is due to a LazyInitializationException occurring in the procession of the requests...
Andreas Müller
02:56 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
The pp synonyms should precede the misapplied names. Currently they come afterwards or the order is undefined. Andreas Müller
02:06 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
this is due to a LazyInitializationException occurring in the procession of the requests like:
http://160.45.63.17...
Andreas Kohlbecker
01:43 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
The same is true for euromed on test!! Andreas Müller
01:42 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
At least in cichorieae test (http://test.e-taxonomy.eu/dataportal/preview/cichorieae/admin/config/cdm_dataportal/sett... Andreas Müller
01:36 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Also, as symbol is not a required field, we may also think about fallbacks in case symbol is NULL.
E.g. (symbol !...
Andreas Müller
01:33 PM feature request #7417 (Feedback): Make pro parte and partial synonym relationships always visible in data portals
The symbols are still used in incorrect direction. On the side of the "real" taxon (which takes the role of the toTax... Andreas Müller
04:37 PM bug #7516 (New): details view has to show empty page if bulk editor has no item selected
Katja Luther
04:37 PM task #7515 (Resolved): TypeDesignationStatusComparator to sort by vocabulary first and then by term order

I stumbled over this when editing possibly invalid data with the Taxeditor:
Opening the "Details View" for a nam...
Andreas Kohlbecker
04:35 PM bug #7514 (Closed): Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
To have a consistent reading we need the current symbol to be the invers symbol as we show usually the inverse relati... Andreas Müller
04:35 PM Revision a4784593 (taxeditor): ref #7439 Add context menu to cell editor, disable editing
Patrick Plitzner
04:35 PM Revision 9d6458e9 (taxeditor): ref #7439 disable auto-resize after search
Patrick Plitzner
04:33 PM bug #4362: Some File->New dialogs do not work
do you know, why the specimen are removed from the new menu? Katja Luther
04:29 PM feature request #3534 (Duplicate): Predefine inreference type when adding the inreference to a subreference
Katja Luther
04:29 PM feature request #3534: Predefine inreference type when adding the inreference to a subreference
this is already implemented, see #1606 Katja Luther
04:27 PM feature request #7508: Add language information to term representations
Andreas Kohlbecker wrote:
> LazyInitializationException occurring in the procession of the requests like:
>
> htt...
Andreas Müller
02:08 PM feature request #7508: Add language information to term representations
LazyInitializationException occurring in the procession of the requests like:
http://160.45.63.175/cdmserver/cich...
Andreas Kohlbecker
01:18 PM feature request #7508: Add language information to term representations
i think you can close it! Andreas Kohlbecker
12:58 PM feature request #7508: Add language information to term representations
Should we close the ticket? Andreas Müller
04:11 PM Revision 8360c0ff (taxeditor): fix #4101: getValue() was missing
Katja Luther
04:04 PM Revision 4899d396 (cdmlib): ref #7508 fix lazy loading exception for inverseRepresentations
Andreas Müller
04:00 PM bug #7313: eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
completed.
@a.mueller: please review my implementation
Andreas Kohlbecker
03:59 PM bug #7313 (Resolved): eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
Applied in changeset commit:cdm-vaadin|65d2936da23181f34fe6561dd4ae55c21c81d21b. Andreas Kohlbecker
12:51 PM bug #7313 (In Progress): eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
Andreas Kohlbecker
03:59 PM Revision 65d2936d (cdm-vaadin): fix #7313 adding kindOfUnit terms to new vocabulary
Andreas Kohlbecker
03:33 PM Revision 390d8116 (cdmlib): ref #7508 fix lazy loading exception for inverseRepresentations
Andreas Müller
03:32 PM Revision f6df4cfb (cdmlib): cleanup
Andreas Müller
02:29 PM Revision 64a28761 (cdm-vaadin): ref #7059 removing code to delete obsolete terms
Andreas Kohlbecker
02:26 PM Revision af047de6 (cdm-vaadin): fixing readonly state of SwitchableTextField
Andreas Kohlbecker
02:19 PM Revision 14d64fed (cdm-vaadin): ref #7364 fixing readonly state of NameRelationField
Andreas Kohlbecker
02:09 PM feature request #6659 (Closed): Show mediaCreated in dataportal
Works well. Andreas Müller
01:30 PM Revision cf8c950b (cdm-vaadin): ref #7458 fixing readonly state in FilterableAnnotationsField
Andreas Kohlbecker
12:55 PM feature request #7285 (Closed): Edaphobase import: implement ranks Cohort, Hyporder
I think this can be closed as long as no other feedback comes. Andreas Müller
12:43 PM bug #7220 (Worksforme): Permission Denied in readonly mode of TypeDesignationEditor
I can not reproduce this issue, it seems as if this has been fixed meanwhile. Andreas Kohlbecker
12:24 PM bug #4847: Problem with session attributes for a UI used in different CDM Instances
This problem can generally be solved by using `vaadin-spring`. With `vaadin-spring` all UI Objects are Spring beans w... Andreas Kohlbecker
12:07 PM bug #4847 (In Progress): Problem with session attributes for a UI used in different CDM Instances
Andreas Kohlbecker
12:04 PM feature request #7439: Use NatTable for BulkEditor
Andreas Müller wrote:
> Having the markers for deduplication (target, candidate) in the text fields is not very comf...
Andreas Müller
12:01 PM feature request #7439: Use NatTable for BulkEditor
Changing the text in a cell for now should not be possible until #7503 is implemented. If NAT tables don't offer such... Andreas Müller
11:58 AM feature request #7439: Use NatTable for BulkEditor
Using the standard right click menu is cumbersome as clicking on a column cell immediately changes the cell into the ... Andreas Müller
11:46 AM feature request #7439: Use NatTable for BulkEditor
Having the markers for deduplication (target, candidate) in the text fields is not very comfortable and scalable. Whe... Andreas Müller
11:37 AM feature request #7439 (Feedback): Use NatTable for BulkEditor
Andreas Müller
11:23 AM feature request #7513 (New): Proper user feedback on attempt to access unpublished taxon
Hi Andreas,

ich frage mich, ob wir die Anzeige für ein unpubliziertes Taxon noch verbessern können, falls doch ma...
Andreas Kohlbecker
11:13 AM Revision 65890142 (cdmlib): ref #7509 Implement service method for common parent taxon node + test
Patrick Plitzner
10:53 AM Revision 605181a2 (cdmlib): fixing failing suppression of inverseRepresentations
Andreas Kohlbecker
10:53 AM Revision 575d53ab (cdmlib): harmonizing controller logging
Andreas Kohlbecker
09:12 AM feature request #6321 (In Progress): Implement parallel loading + progress bar for loading objects into the bulk editor
Move this to next milestone until it is reactivated Andreas Müller

06/25/2018

10:54 PM feature request #7458 (Resolved): Note field for TaxonName , NameType and SpecimenType editors
fully implemented and ready for the review Andreas Kohlbecker
10:53 PM Revision 2e814df1 (cdm-vaadin): ref #7458 implementation of the note field for the NameTypeEditor
Andreas Kohlbecker
10:26 PM Revision 782f192b (cdm-vaadin): ref #7458 implementation of the note field for the TypeSpecimenEditor
Andreas Kohlbecker
09:34 PM Revision 6a066197 (cdm-vaadin): ref #7458 solving generic type parameter problem in FilterableAnnotationsField
Andreas Kohlbecker
07:14 PM feature request #7071: Reenable restore functionality
Upps, sorry, I see that this is not a master ticket. However, InProgress or New might still be the better status. Andreas Müller
07:13 PM feature request #7071: Reenable restore functionality
As this is a master ticket only should we switch from Feedback to InProgress? Suits better IMO. Andreas Müller
04:02 PM feature request #7071: Reenable restore functionality
Moving to the next release because it is not critical Patrick Plitzner
07:10 PM bug #7512: Saving in Specimen Tree View creates unwanted scrolling on windows
Please discuss who should be assignee. Maybe better KL as using windows. Andreas Müller
07:07 PM bug #7512 (New): Saving in Specimen Tree View creates unwanted scrolling on windows
Copy from #7418 and #7102
To reproduce the scrolling issue:
* Connect to test-rem_conf_am
* Open Specimen Tr...
Andreas Müller
07:09 PM bug #7418 (Closed): remaining specimen determination details view issues
As the scrolling issue is not related to determination details view I created a new ticket for this issue #7512 and r... Andreas Müller
04:00 PM bug #7418: remaining specimen determination details view issues
moving this to the next release as it is not critical Patrick Plitzner
12:07 PM bug #7418: remaining specimen determination details view issues
This behavior is not reproducable on a Linux machine. On Windows it happens when saving with the "Save" icon but it d... Patrick Plitzner
05:59 PM feature request #4363: Show more informative message for unsupported specimen structures in specimen bulk editor
Now, a more informative message is shown. The text is generated in the DerivedUnitFacade constructor. It is interesti... Patrick Plitzner
05:55 PM feature request #4363 (Resolved): Show more informative message for unsupported specimen structures in specimen bulk editor
Applied in changeset commit:taxeditor|dcf98348abae2de24283207fddb7cb670c6028b6. Patrick Plitzner
05:55 PM Revision dcf98348 (taxeditor): fix #4363 Show more informative message in details view for specimen
Patrick Plitzner
05:41 PM Revision a2415b9f (cdm-vaadin): ref #7458 initial implementation of a note field at the example of the TaxonNameEditor
Andreas Kohlbecker
04:17 PM bug #7079 (Closed): P2 updates not found
Patrick Plitzner
04:16 PM bug #7079: P2 updates not found
Patrick Plitzner wrote:
> @Andreas K.: Can you test this again. But you need to have a downloaded nightly build ...
Andreas Kohlbecker
03:59 PM bug #7079: P2 updates not found
The update did not work for after the release because of a wrong version tag due to the manual update script.
This...
Patrick Plitzner
04:02 PM feature request #7015: Migrate recent menu item
Moving to the next release because it is not critical Patrick Plitzner
03:51 PM feature request #7508: Add language information to term representations
The commits look good at first glance but I had no time to take an in depth look. Andreas Kohlbecker
03:31 PM Revision 01a4599b (taxeditor): ref #7439 increase size of id column
Patrick Plitzner
03:23 PM Revision fbdeccd7 (taxeditor): ref #7505, #6321 Update UI after bulk editor search + remove page size
Patrick Plitzner
03:21 PM Revision e7314de8 (taxeditor): ref #7505, #6321 Enable max count check for bulk editor searches
Patrick Plitzner
03:16 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Parallel loading is temporarily deactivated. Fix for #7505 and update problem in name details view Patrick Plitzner
03:14 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
This problem came up with the parallel loading of the search results in the bulk editor. The CDM entities were not co... Patrick Plitzner
01:19 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
Further potential examples
* all names with genus name "Alpha"
* Navicula adminensis A. Boudou & A.A.Gontsch.
...
Andreas Kohlbecker
03:09 PM Revision 28c922f7 (taxeditor): ref #7505, #6321 Disable parallel loading
- This caused problems with the session handling because the CDM
entities were not correctly loaded
Patrick Plitzner
01:12 PM bug #7511 (Duplicate): LazyInitializationException (LIE) opening Registration Workingset Editor
Andreas Kohlbecker
12:35 PM bug #7511 (Duplicate): LazyInitializationException (LIE) opening Registration Workingset Editor
opening the Registration Workingset Editor for
Braun, A., A new Psammothidium species (Bacillariophyta, Achnanthi...
Andreas Kohlbecker
12:59 PM Revision beb7ef65 (cdm-vaadin): ref #7331 re-introducing load to cirumvent bug
Andreas Kohlbecker
10:58 AM Revision 826d50b4 (taxeditor): i18n for bulk editor
Patrick Plitzner
10:55 AM Revision 2bbac2af (cdmlib): remove deprecated method TaxonService.getAllMedia
Andreas Müller
10:36 AM Revision ce3b4e95 (cdmlib): ref #7508 fix inverse L10n term representation
Andreas Müller
10:33 AM feature request #7510 (Worksforme): Allow entering aggregated/statistical data for single specimens in character matrix
For some specimens it may be practical to enter statistical data. This should also be possible within or from the cha... Patrick Plitzner
10:21 AM Revision d2540808 (cdmlib): ref #7509 Add service method for common parent taxon node
Patrick Plitzner
10:18 AM feature request #7509 (Closed): Aggregate and persist specimen character data from character matrix
Currently we only have a temporary aggregation row and the aggregated values are not persisted.
For persisting the...
Patrick Plitzner

06/22/2018

02:37 PM feature request #7508: Add language information to term representations
Can you please review before release? Don't know if this all makes sense and is according to our general webservice s... Andreas Müller
11:33 AM feature request #7508 (Resolved): Add language information to term representations
Applied in changeset commit:cdmlib|75bfa4b6e6d3256d7b325ed9b5415b902e47b998. Andreas Müller
11:30 AM feature request #7508 (Closed): Add language information to term representations
Currently it is not possible to retrieve information which language a representation belongs to.
> [Andreas Mülle...
Andreas Müller
02:34 PM Revision c26edffc (cdmlib): ref #7508 correct handling of UUID in RepresentationBeanProcessor
Andreas Müller
02:12 PM Revision 32495c5f (cdmlib): exception handling for classification filter in getAcceptedTaxonFor
Andreas Müller
02:11 PM Revision 090f1450 (cdmlib): HTTPMessage handling in TaxonController
Andreas Müller
02:09 PM Revision d30b5c09 (cdmlib): ref #7508 further fix term representation web service
Andreas Müller
01:51 PM Revision cd37d4f5 (cdmlib): cleanup
Andreas Müller
01:04 PM Revision 02bb1714 (taxeditor): fix progressmonitor tests
Katja Luther
12:50 PM Revision 7e7d98aa (taxeditor): minor
Katja Luther
12:39 PM Revision 4eb265cf (cdmlib): fix NPE in IdentifiableServiceBase.getTitleSearchStringSqlized
Andreas Müller
12:39 PM Revision 2937c7c8 (cdmlib): cleanup
Andreas Müller
12:29 PM feature request #7439 (Resolved): Use NatTable for BulkEditor
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Comment #7439#note-12: Enabled sorting (Please open a new ticke...
Patrick Plitzner
12:14 PM Revision bb006ee7 (cdmlib): ref #3560 fix checkPublished in service base class
Andreas Müller
12:14 PM Revision c4bfb623 (cdmlib): cleanup
Andreas Müller
11:49 AM Revision 73d25c5b (taxeditor): ref #7439 Fix loading progress of occurrence bulk editor
Patrick Plitzner
11:49 AM Revision 21e30f05 (taxeditor): ref #7439 auto resize columns after search
Patrick Plitzner
11:49 AM Revision af09c490 (taxeditor): ref #7439 i18n for "copy" command
Patrick Plitzner
11:49 AM Revision 1e037cd6 (cdmlib): ref #7439 SQLize title search for occurrences
Patrick Plitzner
11:33 AM Revision 75bfa4b6 (cdmlib): fix #7508 add language information to term representations
Andreas Müller
11:32 AM Revision c2c03366 (cdmlib): cleanup
Andreas Müller
11:22 AM Revision 0658fcc1 (taxeditor): use submonitor for progressmmonitor in longrunning tasks
Katja Luther
11:22 AM Revision 105e5489 (taxeditor): use submonitor for progressmmonitor in longrunning tasks
Katja Luther
10:18 AM Revision 281a5d27 (cdmlib): cleanup
Andreas Müller
10:13 AM Revision 6f08d3c0 (cdmlib): Allow specific messages for HTTPStatusMessage responses
Andreas Müller
10:04 AM Revision d499114c (cdmlib): ref #3560 unpublished exception handling for TaxonController.getPathFromTaxon(ToRank)
Andreas Müller
09:56 AM Revision 87ffda36 (cdmlib): ref #3560 unpublished exception handling for TaxonController.doGetAcceptedFor
Andreas Müller
09:56 AM Revision ff3035c8 (cdmlib): cleanup
Andreas Müller

06/21/2018

09:34 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
Andreas Kohlbecker wrote:
> The name authorship fields are hidden and are populated with data automatically by infer...
Andreas Müller
09:24 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
Andreas Müller wrote:
> I think it is not generally reproducable but in this case.
>
> It is interesting that the...
Andreas Kohlbecker
07:16 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
I think it is not generally reproducable but in this case.
It is interesting that the duplicated person appears 2x...
Andreas Müller
03:38 PM bug #7505 (Closed): IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
This exception is reproducible
~~~
login : admin
editor version : 5.1.0.201806211249
server : localhost (localh...
Andreas Kohlbecker
05:34 PM feature request #7507 (New): Advanced "Copy" in bulk editor
Copied from #7439:
* If the whole row has the focus we may want to copy all fields in csv or tsv format.
* For mu...
Patrick Plitzner
05:31 PM feature request #7506 (Duplicate): Allow direct editing bulk editor
For now, it is only possible to edit using the DetailsView.
With the NatTable we can change this behavior and allo...
Patrick Plitzner
05:26 PM Revision 0ceb7d55 (taxeditor): ref #7439 Fix rare rendering problem during initialization
Patrick Plitzner
05:17 PM Revision abe4eec5 (taxeditor): ref #7439 Re-select after entity has been loaded
Patrick Plitzner
04:57 PM Revision 83d0e22f (taxeditor): ref #7463: adapt the percentage display in status bar for progress of longrunning task
Katja Luther
04:39 PM feature request #7463: Move taxonnodes should be available for multiple selection
Andreas Müller wrote:
> By the way, moving the 4 children of Charyophyllaceae Juss. results in relativ fast counting...
Katja Luther
01:57 PM feature request #7463: Move taxonnodes should be available for multiple selection
By the way, moving the 4 children of Charyophyllaceae Juss. results in relativ fast counting 25, 50, 75 and 100% and ... Andreas Müller
01:37 PM feature request #7463: Move taxonnodes should be available for multiple selection
The refresh issue still exists and is critical. It seems to happen with large subtrees. E.g. I moved Charyophyllaceae... Andreas Müller
04:35 PM Revision 09376415 (taxeditor): ref #7463: adapt the percentage display in status bar for progress of longrunning task
Katja Luther
04:34 PM Revision d28a05d3 (cdmlib): ref #7463:add subtask for saving and reindexing in moveTaxonNodes
Katja Luther
03:56 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
secured TaxonPortalController.doGetFromNameRelations and doGetToNameRelations Andreas Müller
03:40 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
secured TaxonPortalController.doGetMedia and doGetSubtreeMedia
Andreas Müller
09:56 AM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
I updated the ws-endpoint-usage.ods spread sheet by the information from the issue description.
There are now only...
Andreas Kohlbecker
03:48 PM Revision 76bdf64b (cdmlib): ref #3560 secured TaxonPortalController.doGetFromNameRelations and doGetToNameRelations
Andreas Müller
03:46 PM Revision 6cf49987 (taxeditor): ref #7439 Re-select after search has finished
Patrick Plitzner
03:38 PM Revision 53a4a1d9 (cdmlib): ref #3560 secured TaxonPortalController.doGetMedia and doGetSubtreeMedia
Andreas Müller
03:37 PM Revision 8c6a7c50 (cdmlib): cleanup
Andreas Müller
01:47 PM Revision 91b9bc97 (taxeditor): remove task from progress view after finish
Katja Luther
11:46 AM feature request #7464 (Feedback): make move Taxonnodes a longrunning task
The jobs still appear in the Progress Monitor View even if they finished already. Is this wanted?
I compared with ...
Andreas Müller
11:12 AM Revision e3492ca9 (taxeditor): ref #7439 Make cells editabel to allow selecting text
Patrick Plitzner
10:47 AM Revision 8dc339f5 (taxeditor): ref #7439 Scroll to selection when editing elements
Patrick Plitzner
10:46 AM Revision 32b90a5c (taxeditor): ref #7439 Fix potential NPE
Patrick Plitzner
10:46 AM Revision 2674f1d5 (taxeditor): ref #7439 little refactoring
Patrick Plitzner
01:03 AM Revision 16510d70 (cdm-vaadin): fix failing test
Andreas Müller
12:56 AM Revision 97a7cfe2 (cdm-vaadin): cleanup
Andreas Müller
12:35 AM Revision a83e75c0 (cdmlib): try to fix tests
Andreas Müller
12:35 AM Revision 1d3d01a7 (cdmlib): cleanup
Andreas Müller
12:17 AM Revision 66122abe (cdmlib): cleanup
Andreas Müller
12:04 AM Revision 5291e4cf (cdmlib): cleanup
Andreas Müller

06/20/2018

11:54 PM Revision e061e243 (cdmlib): fix incorrect handling of null lists and boolean operator in NameCatalogueController
Andreas Müller
11:53 PM Revision e11ed28f (cdmlib): cleanup
Andreas Müller
10:46 PM Revision 0df21dfd (cdmlib): ref #7478 add test to pro parte hql search
Andreas Müller
10:43 PM Revision fe0c2ae8 (cdmlib): cleanup
Andreas Müller
10:38 PM Revision f13dc62d (cdmlib): remove harmonization candidates in TaxonDao and NameService
Andreas Müller
10:26 PM Revision 7b43c8a7 (cdmlib): cleanup
Andreas Müller
09:37 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
Andreas Kohlbecker wrote:
> first of all I analyzed the logfile on the production server and created a statistics on...
Andreas Müller
12:04 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
Hi Andreas,
first of all I analyzed the logfile on the production server and created a statistics on all webservic...
Andreas Kohlbecker
03:07 PM Revision f6fe3908 (taxeditor): ref #7439 Update entity in bulk editor when editing details
Patrick Plitzner
03:07 PM Revision b1a5fb98 (cdmlib): ref #3547 cleanup and remove size of TaxonDaoHibernateImplTest.testGetTaxaByNameAndArea.xml
Andreas Müller
03:07 PM Revision 302a6344 (cdmlib): improve readability of test and fix test for common names
Andreas Müller
02:04 PM Revision 854c0038 (cdmlib): fixing minor logging issues in catalogue controllers
Andreas Kohlbecker
01:45 PM Revision 6ac596b4 (cdmlib): fixing minor logging issues in controllers
Andreas Kohlbecker
01:42 PM Revision 7aac0891 (cdmlib): ref #7478 simplify taxon hql search code
Andreas Müller
01:42 PM Revision 5caad148 (cdmlib): cleanup
Andreas Müller
01:35 PM Revision ede4ba36 (taxeditor): ref #7439 set dirty flag to false when closing bulkeditor
- code cleanup Patrick Plitzner
01:21 PM Revision 5bccee4f (cdmlib): dedicated private loggers per controller class for more useful logs
Andreas Kohlbecker
01:20 PM Revision 0f2a8f74 (cdmlib): dedicated private loggers per controller class for more useful logs
Andreas Kohlbecker
12:53 PM Revision 31a9124b (taxeditor): ref #7439 Cleanup saveCandidates of bulk editor input
Patrick Plitzner
12:38 PM Revision d4e06699 (cdmlib): ref #7478 some cleanup and renaming for taxon hql search
Andreas Müller
12:37 PM Revision 7106e8d1 (taxeditor): ref #7439 Fixc initial sort of bulk editor list
Patrick Plitzner
12:35 PM Revision 0acc65d5 (taxeditor): ref #7439 Update marker change in supplemental view
Patrick Plitzner
12:24 PM feature request #7439: Use NatTable for BulkEditor
Comment #7439#note-9: Focus loss is fixed
Comment #7439#note-11: Rendering problem is fixed
Comment #7439#note-12: ...
Patrick Plitzner
10:49 AM feature request #7439: Use NatTable for BulkEditor
Patrick Plitzner wrote:
> Comment #7439#note-12: Enabled sorting (Please open a new ticket specifying which addition...
Andreas Müller
10:37 AM feature request #7439: Use NatTable for BulkEditor
Patrick Plitzner wrote:
> Comment #7439#note-7: Cell text is left aligned
Great! Looks much better now.
One m...
Andreas Müller
10:31 AM feature request #7439: Use NatTable for BulkEditor
Andreas Müller wrote:
> For multi-select copy is not yet possible but might be a very nice feature (E.g. for copy an...
Andreas Müller
10:22 AM feature request #7439: Use NatTable for BulkEditor
Andreas Müller wrote:
> Copying parts of the titleCache within the table is not possible. This is a regression compa...
Andreas Müller
09:51 AM feature request #7439: Use NatTable for BulkEditor
Patrick Plitzner wrote:
> Comment #7439#note-13: Could not reproduce this behavior. Which bulk editor did you use? O...
Andreas Müller
09:47 AM feature request #7439: Use NatTable for BulkEditor
Also the problem is not necessarily related to opening multiple editors. But this is how you can easily reproduce the... Andreas Müller
09:39 AM feature request #7439: Use NatTable for BulkEditor
Patrick Plitzner wrote:
> Comment #7439#note-11: I can reproduce this as well when opening the third editor. Questio...
Andreas Müller
09:31 AM feature request #7439: Use NatTable for BulkEditor
Comment #7439#note-7: Cell text is left aligned
Comment #7439#note-11: I can reproduce this as well when opening the...
Patrick Plitzner
12:23 PM bug #7504 (New): Contradictory markers created when using bulk editor
steps to reproduce
1. Open any bulk editor
1. Add a marker to one element with "yes"
1. Add the same marker to t...
Patrick Plitzner
12:05 PM Revision 2a95430a (cdmlib): ref #7478 fix pro parte synonym search in taxon hql search (still untested)
Andreas Müller
12:04 PM Revision a1b92e88 (taxeditor): ref #7439 Remove sort type combo box
Patrick Plitzner
12:01 PM Revision 5bdaf8c0 (cdmlib): cleanup
Andreas Müller
11:00 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Patrick Plitzner wrote:
> And this definitely is a problem which happens because of the re-searching. But we can res...
Andreas Müller
10:58 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Patrick Plitzner wrote:
> Ah, ok. This is a misunderstanding of the terms we used. For me (and code-wise), the **foc...
Andreas Müller
10:50 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
See also #7439#note-29 for sorting with pre-sorted columns. Andreas Müller
09:30 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Ah, ok. This is a misunderstanding of the terms we used. For me (and code-wise), the **focus** refers to a view or ed... Patrick Plitzner
09:25 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Even worse than the focus loss is that we jump back to first record. This is definitely not acceptable. Andreas Müller
09:04 AM feature request #6321 (Feedback): Implement parallel loading + progress bar for loading objects into the bulk editor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Critical: setting focus does not work after reloading.
> >
...
Andreas Müller
08:22 AM feature request #6321 (Resolved): Implement parallel loading + progress bar for loading objects into the bulk editor
Patrick Plitzner
08:22 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Andreas Müller wrote:
> Critical: setting focus does not work after reloading.
>
> E.g. after saving the focus i...
Patrick Plitzner
10:24 AM feature request #7503 (New): Make cells in bulk editor editable
Copied from #7439:
By the way, changing data within the columns may become an option now. E.g. changing the specif...
Andreas Müller
10:16 AM feature request #7502 (Closed): Add further columns to bulk editor
As a start we could always add id, uuid, created, updated. But if possible there should be a way to hide this columns... Andreas Müller
09:09 AM Revision 029aa66a (taxeditor): ref #7439 Add sorting and cell text left-align to bulk editor nat table
Patrick Plitzner
09:06 AM feature request #7464: make move Taxonnodes a longrunning task
please review Katja Luther
08:43 AM bug #7085 (In Progress): cdmserver logfiles getting too big, use RollingFileAppender
Andreas Kohlbecker
08:37 AM bug #7498 (Closed): ClassCastException on saving popup editor for validated name
Andreas Kohlbecker
08:20 AM Revision 387ccf8f (taxeditor): increase startup size to HD 720 (1280 x 720)
Patrick Plitzner
08:17 AM Revision fa79586c (taxeditor): ref #6321 Add preference to run long operations in background
Patrick Plitzner

06/19/2018

06:37 PM bug #7498: ClassCastException on saving popup editor for validated name
Eingabe fehlerfrei, Ticket kann geschlossen werden, Danke! Wolf-Henning Kusber
04:21 PM bug #7498: ClassCastException on saving popup editor for validated name
Hallo Henning,
das Problem ist behoben. Du kannst nun testen.
Andreas
Andreas Kohlbecker
04:15 PM bug #7498 (Resolved): ClassCastException on saving popup editor for validated name
Applied in changeset commit:cdm-vaadin|c43b6a2e7af9d79dae1d83d573d528c619892e85. Andreas Kohlbecker
04:13 PM bug #7498 (In Progress): ClassCastException on saving popup editor for validated name
Andreas Kohlbecker
04:10 PM bug #7498 (Closed): ClassCastException on saving popup editor for validated name

ei einer Validierung, Referenz eingebunden. Zurück zu validiertem Namen, dort Speicherfehler.
VG
Henning
~~~
...
Andreas Kohlbecker
06:09 PM feature request #4101: Default value for publish bit of new taxa must be configurable via DB preferences
We may also want to show the new publish flag value in the "new taxon" dialog. But this might be another ticket. Andreas Müller
06:07 PM feature request #4101: Default value for publish bit of new taxa must be configurable via DB preferences
When I set to "Don't set publish flag" the new child taxon still has publish flag = true. Also inheriting from parent... Andreas Müller
05:50 PM feature request #4101 (Feedback): Default value for publish bit of new taxa must be configurable via DB preferences
When trying to save I got:
~~~
login : admin
editor version : 5.1.0.201806191452
server : test.e-taxonomy.eu (e...
Andreas Müller
06:02 PM Revision ba0d3894 (cdmlib): corretly handle exception in ClassificationPortalListController
Andreas Müller
06:02 PM Revision 816e822f (cdmlib): ref #4101 change ICNB and ICNAFP in order of enum to get a more alphabetically oriented order.
Andreas Müller
05:44 PM Revision d7983c72 (taxeditor): ref #4101 adapt labels for set publish flag options
Andreas Müller
05:38 PM Revision eef2730e (taxeditor): ref #4101 label for publish flag preferences
Andreas Müller
05:32 PM Revision a48d0ae3 (cdmlib): smaller changes for longrunning tasks and progress monitor
Katja Luther
05:30 PM bug #7472 (Closed): lazy loading exception for MAN with type specimen
Saving works now and I also could not reproduce the old LLE anymore (though difficult to test).
=> close ticket.
Andreas Müller
04:22 PM bug #7472: lazy loading exception for MAN with type specimen
please review Katja Luther
04:18 PM bug #7472 (Resolved): lazy loading exception for MAN with type specimen
Applied in changeset commit:taxeditor|f63b9efba7c845673c35fd732e4cba7056c081ce. Katja Luther
03:54 PM bug #7472 (Feedback): lazy loading exception for MAN with type specimen
Now, changes in misapplied names and pro parte synonyms are not persisted anymore so I have to reopen tickets. If thi... Andreas Müller
05:13 PM task #3560 (Resolved): Withheld unpublished taxa from webservice used in E+M dataportal
I still want to unify the handling of unpublished a bit, but maybe you can already start testing if there some servic... Andreas Müller
05:04 PM feature request #7501 (New): Deduplicate MANs and pro parte synonyms in portal results
Currently, if searching for a MAN//ppSyn which is related to >1 accepted taxon, the search shows 2 (or more) equal en... Andreas Müller
05:02 PM feature request #7464: make move Taxonnodes a longrunning task
now the longrunning task can be canceled Katja Luther
05:00 PM Revision 62ea8281 (cdmlib): cancel the longrunning thread cancels moveTaxonNode and set it to rollbackOnly
Katja Luther
04:47 PM Revision 2b7b435a (taxeditor): ref #6321 show progress bar in dialog
Patrick Plitzner
04:47 PM Revision 264fff91 (taxeditor): ref #6321 Use individual page size for different editor inputs
Patrick Plitzner
04:28 PM bug #7500 (Closed): Can't open both related accepted taxa of reused MAN
In E+M we do have the misapplied taxon "*Hedysarum confertum* sec. Greuter & al." (uuid= fd76aa0c-f4ca-484e-ab2c-9bcb... Andreas Müller
04:25 PM bug #7499 (Closed): NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel
works as expected Katja Luther
04:13 PM bug #7499: NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel
please review Andreas Müller
04:13 PM bug #7499 (Resolved): NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel
Applied in changeset commit:taxeditor|2ac7f4b62186854c15bd2fff8666873a6d853ae5. Andreas Müller
04:11 PM bug #7499 (Closed): NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel

~~~
login : admin
editor version : 5.1.0.201806191201
server : test.e-taxonomy.eu (edit-test) / euromed
schema ...
Andreas Müller
04:18 PM Revision f63b9efb (taxeditor): fix #7472: always merge taxon relations in name editor before merging
Katja Luther
04:15 PM Revision c43b6a2e (cdm-vaadin): fix #7498 selective handling of ToOneRelatedEntityCombobox when casting to ReloadableLazyComboBox
Andreas Kohlbecker
04:12 PM Revision 2ac7f4b6 (taxeditor): fix #7499 fix NPE for cancel of taxon node selection
Andreas Müller
04:12 PM Revision 62c7b292 (taxeditor): cleanup
Andreas Müller
04:07 PM Revision 0afb9358 (cdmlib): check in done() in remotingProgressMonitor whether result is already set
Katja Luther
03:49 PM bug #7478 (In Progress): Fix pro parte synonym search
Andreas Müller
03:27 PM Revision 387c38e7 (taxeditor): cleanup
Andreas Müller
03:26 PM Revision 144d1d52 (cdmlib): cleanup
Andreas Müller
02:38 PM Revision 4c502e1d (cdmlib-apps): further cleanup
Andreas Müller
02:34 PM Revision ab2f9bc5 (cdmlib-apps): cleanup not compiling and other issues in app-import and pesi
Andreas Müller
01:54 PM Revision 017d9197 (taxeditor): update name editors for long running tasks
Katja Luther
01:54 PM Revision 1f8befae (cdmlib): ref #6321 Make OrderHint serializable
Patrick Plitzner
01:25 PM task #7497: Dokument and add guides and hints to the UI
[Henning wrote]:
Durch die Validierung ist es nicht mehr möglich, das Species-Epitheton neu einzugeben.
D.h. ein...
Andreas Kohlbecker
01:12 PM task #7497 (Rejected): Dokument and add guides and hints to the UI

## TaxonNameEditor
* when mode VALIDATE_AGAINST_HIGHER_NAME_PART is enabled: "register new name if the needed ge...
Andreas Kohlbecker
01:21 PM Revision caa38c5b (cdmlib): progressmonitor should be set to done by progressMonitorThread not in service methods
Katja Luther
01:20 PM Revision a523e596 (taxeditor): fix progressmonitor handling
Katja Luther
01:13 PM task #7338: Validate taxon name against the higher taxon name
Wolf-Henning Kusber wrote:
> Fehler in #10 behoben, aber... #7497#note-3
Andreas Kohlbecker
11:55 AM task #7338: Validate taxon name against the higher taxon name
Fehler in #10 behoben, aber... Wolf-Henning Kusber
12:55 PM Revision eafb60f0 (cdm-dataportal): fix #7417 defaults for TAXON_RELATIONSHIP_TYPES - bugfix
Andreas Kohlbecker
11:59 AM feature request #7496 (Closed): TaxonNodes in cdm_taxontree can either link to taxon or reference search result pages
Currently clicking on a taxon name in the classification tree as rendered by the cdm_taxontree leads to the according... Andreas Kohlbecker
11:54 AM feature request #7495 (Closed): Registration page implemented
A cdm entity node type for `Registration`
----
implemented, example url: http://test.e-taxonomy.eu/dataportal/pre...
Andreas Kohlbecker
11:51 AM feature request #7494 (Closed): RegistrationSearch implemented
The RegistrationSearch will allow searching for Registrations by
* TaxonName (like search with wildcard)
* Regist...
Andreas Kohlbecker
11:47 AM Revision bb809fe0 (taxeditor): minor
Katja Luther
11:40 AM feature request #6985 (Closed): display Registration metadata in footnotes
is solved Andreas Kohlbecker
11:37 AM feature request #6985: display Registration metadata in footnotes
for example http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/taxon/f48b4b22-0625-4820-ad82-abf12... Andreas Kohlbecker
11:36 AM Revision ef0f0b69 (taxeditor): adapt taxeditor to changes in progress monitor handling
Katja Luther
11:32 AM Revision ed4d8a9e (cdmlib): fix problems with progress monitor
Katja Luther
10:49 AM bug #7482 (Closed): TaxonNameEditor relpacedSynonym not set after adding or editing the related name
Andreas Kohlbecker
10:49 AM bug #7482: TaxonNameEditor relpacedSynonym not set after adding or editing the related name
test OK Wolf-Henning Kusber
10:41 AM Revision 487ee713 (cdmlib): remove progress monitor thread from progress monitor
Katja Luther
09:18 AM Revision 32600fc6 (taxeditor): minor
Katja Luther
09:06 AM Revision 70c282fc (cdmlib): revert changes in cleanupThread of progressMOnitorManager
Katja Luther
08:59 AM Revision be02a7ab (cdm-dataportal): ref #7493 un-commenting SynonymTypes again
Andreas Kohlbecker

06/18/2018

08:34 PM bug #7493: Review all references to SynonymRelationshipTypes and adapt code if needed
Probably this is clear anyway but just if not I want to mention that SynonymRelationshipTypes are more or less still ... Andreas Müller
05:51 PM bug #7493: Review all references to SynonymRelationshipTypes and adapt code if needed
Cleaning the code in which the SynonymRelationshipTypes constants are used requires analysis of various code parts a... Andreas Kohlbecker
04:43 PM bug #7493 (New): Review all references to SynonymRelationshipTypes and adapt code if needed
SynonymRelationshipTypes habe been renamed to SynonymType in commit:fbeefcaf
The dataportal references the terms by...
Andreas Kohlbecker
08:23 PM feature request #7157 (Rejected): interim solution to mark pro parte synonyms in the dataportal
This interims solution was meant for the time when synonyms still had a pro parte/partial flag. Now this is handled v... Andreas Müller
04:20 PM feature request #7157 (Feedback): interim solution to mark pro parte synonyms in the dataportal
Andreas Kohlbecker
04:19 PM feature request #7157: interim solution to mark pro parte synonyms in the dataportal
There is no proParte Flag in the TaxonBase or in the Synonym class. Is this issue still relevant? Andreas Kohlbecker
05:32 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
finally done and ready for reviewing Andreas Kohlbecker
05:31 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible in data portals
Applied in changeset commit:cdm-dataportal|f95ba88b3d58a16df1a8eb013900268d66e0139d. Andreas Kohlbecker
05:13 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
As these new TaxonRelationshipTypes already are available in the production systems the accoring settings may already... Andreas Kohlbecker
04:21 PM feature request #7417 (In Progress): Make pro parte and partial synonym relationships always visible in data portals
I forgot about updating the default settings regarding the pp synonyms Andreas Kohlbecker
03:46 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Hi Andreas,
this is fixed now, please review.
Andreas
Andreas Kohlbecker
03:41 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible in data portals
Applied in changeset commit:cdm-dataportal|baebfef3f130d5b72a4f5a2d44ba41e89e7531ea. Andreas Kohlbecker
05:31 PM Revision f95ba88b (cdm-dataportal): fix #7417 defaults for TAXON_RELATIONSHIP_TYPES and bumping module version number to 5.x
Andreas Kohlbecker
05:14 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Comment #6321#note-13: I tried opening the progress view several times and never saw this exception.
Comment #6321#n...
Patrick Plitzner
05:12 PM Revision 3da52db5 (taxeditor): ref #6321 i18n for search progress in progress bar
Patrick Plitzner
05:10 PM Revision fd28a17f (taxeditor): ref #6321 Show search progress in progress bar
Patrick Plitzner
04:46 PM Revision dffc640f (cdm-dataportal): ref #7493 commenting unused constants of removed SynonymRelationshipTypes
Andreas Kohlbecker
04:41 PM Revision bc04b70c (taxeditor): ref #6321 Show search string in progress bar
Patrick Plitzner
04:34 PM Revision 1e892f7f (taxeditor): ref #6321 Invoke search query with default order by title cache
Patrick Plitzner
04:14 PM Revision 1e1a1052 (taxeditor): ref #6321 Cancel previous search when starting a new one
Patrick Plitzner
03:41 PM Revision baebfef3 (cdm-dataportal): fix #7417 using DefinedTermBase.symbol and inverseSymbol instead of abbreviated labels as taxon relationship labels
Andreas Kohlbecker
03:40 PM feature request #7492 (New): Withheld unpublished taxa from webservice used in other webservices
for open issues see #3560 and copy open issues to **this** ticket before starting.
BaseListController:
* doP...
Andreas Müller
03:35 PM feature request #7491 (New): [MASTER] Withheld unpublished taxa from webservice results and in DAOs
see also #1780, #3740, #3739
Andreas Müller
03:31 PM feature request #4363 (Feedback): Show more informative message for unsupported specimen structures in specimen bulk editor
So can we use the above suggestion as message? The current message is still not really correct or at least too unspec... Andreas Müller
02:56 PM bug #7486 (Closed): Fulltext taxon and name search not correct for Synonym based queries
Andreas Müller
01:41 PM bug #7486: Fulltext taxon and name search not correct for Synonym based queries
This works now for synonyms, for misapplied names and for common names. Andreas Kohlbecker
02:53 PM bug #7418 (Feedback): remaining specimen determination details view issues
The resizing issue seems to be solved now.
To reproduce the scrolling issue:
* Connect to test-rem_conf_am
* O...
Andreas Müller
02:40 PM task #7338: Validate taxon name against the higher taxon name
please test again, as the test server was not up to date when you did the last
test.
Andreas Kohlbecker
02:25 PM bug #7489 (Worksforme): ClassCastException clicking on edit refernce in
this issue really was due to my outdated editor installation. Andreas Kohlbecker
01:50 PM bug #7489 (Feedback): ClassCastException clicking on edit refernce in
please always test with the latest TaxEditor version. You are using 201806110837 which is not compatible with the lat... Andreas Müller
01:07 PM bug #7489: ClassCastException clicking on edit refernce in
Error is reproducible Andreas Kohlbecker
01:03 PM bug #7489 (Worksforme): ClassCastException clicking on edit refernce in
* open Taxon Picris rhagadioloides (L.) Desf., Tabl. Ecole Bot.: 89. 1804
* Activate MA "Picris rhagadioloides"
* ...
Andreas Kohlbecker
02:16 PM Revision 927f13fa (taxeditor): smaller changes in progressMonitorClientManager
Katja Luther
02:12 PM Revision 871145d3 (cdmlib): remove monitorThread from monitor and handle it in progressMonitorManager
Katja Luther
01:58 PM bug #7488: IllegalStateException: Multiple representations .. problem on saving Taxon with misapplied name
Note: the above exceptions occurred with a 7 days old TaxEditor. Andreas Müller
01:57 PM bug #7488: IllegalStateException: Multiple representations .. problem on saving Taxon with misapplied name
Katja, do we have a ticket for those MultRep exception that appeared after last time changing the CDM Cache code?
...
Andreas Müller
01:06 PM bug #7488: IllegalStateException: Multiple representations .. problem on saving Taxon with misapplied name
I could not reproduce this error a second time. Andreas Kohlbecker
01:03 PM bug #7488 (New): IllegalStateException: Multiple representations .. problem on saving Taxon with misapplied name
* Open Picris rhagadioloides (L.) Desf., Tabl. Ecole Bot.: 89. 1804 in the TaxonEditor
* Open details for misaplied ...
Andreas Kohlbecker
01:53 PM bug #7490 (Duplicate): Set published flag on subtree misses out misapplied names
duplicates #7450 Andreas Müller
01:36 PM bug #7490 (Duplicate): Set published flag on subtree misses out misapplied names
I set the publish flag on the whole Cichorieae Standart Classification.
The publish flags of misapplied names are st...
Andreas Kohlbecker
01:53 PM feature request #7422 (Closed): Set nom. illeg as default in NomenclaturalStatusType ComboBox
Katja Luther
01:38 PM feature request #7422 (Feedback): Set nom. illeg as default in NomenclaturalStatusType ComboBox
seems to work now.
Can you still add the last changeset and then close the ticket?
Andreas Müller
11:49 AM feature request #7422 (Resolved): Set nom. illeg as default in NomenclaturalStatusType ComboBox
now, the correct status for nom. illeg. is shown in name editor, please review Katja Luther
01:03 PM bug #7472 (Closed): lazy loading exception for MAN with type specimen
I could not created an exception anymore with my test data. However, I did not test with a copy from production so it... Andreas Müller
11:52 AM feature request #7010 (Closed): Adapt handlers for multiple selection in e4 views
I tested the navigator handlers and they seem to work (except for problems which are probably not related to this tic... Andreas Müller
11:51 AM feature request #7463: Move taxonnodes should be available for multiple selection
in classification combo, the classification of the first selected node is preselected, now. Katja Luther
10:05 AM feature request #7463: Move taxonnodes should be available for multiple selection
Katja Luther wrote:
> Open issues:
>
> * Don't move (grand)child nodes of selected parents to the top level.
> ...
Katja Luther
11:51 AM Revision 0ac7eec9 (taxeditor): ref #7463: preselect of the classification by the classification of the first selected node
Katja Luther
10:44 AM Revision 70729f83 (taxeditor): smaller changes
Katja Luther
10:37 AM Revision 3f6bdfe5 (taxeditor): ref #7463: don't allow drag and drop to same parent
Katja Luther
10:21 AM Revision 4ddb7672 (taxeditor): minor changes in labels
Andreas Müller
10:00 AM Revision 1385d1b6 (cdmlib): ref #7463: do not move children of a moved node to the new parent but keep it as children
Katja Luther
09:48 AM Revision 63e69bf5 (cdmlib): ref #7463: add only moved nodes to resultSet of moveTaxonNodes
Katja Luther
 

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