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From 06/17/2018 to 07/16/2018

07/16/2018

09:00 PM bug #7555 (Closed): TaxonServiceImpl.findTaxaAndNames() broken for cichoriae searching for "Lapsana communis"

the request:
http://api.cybertaxonomy.org/cichorieae/portal/taxon/find.json?doTaxaByCommonNames=1&doMisapplie...
Andreas Kohlbecker
04:33 PM bug #7554: TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state
Problem solved, but not very user-friendly.
http://test.e-taxonomy.eu/cdmserver/phycobank_production/app/registrat...
Wolf-Henning Kusber
04:07 PM bug #7554: TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state
Problems solved, please test. Andreas Kohlbecker
04:06 PM bug #7554 (Resolved): TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state
Applied in changeset commit:cdm-vaadin|1fef72149b63a405d436e3174ca513c3e961275b. Andreas Kohlbecker
03:57 PM bug #7554 (Closed): TeamOrPersonField: removing existing team and adding new team leaves nested components buttons in disabled state

habe ein Problem mit einem neuen Autorenteam in der Section.
Workingset: http://test.e-taxonomy.eu/cdmserver/phyco...
Andreas Kohlbecker
03:26 PM task #7550: Move UserHelper from cdm-vaadin into cdmlib
can be closed if the changes are not again causing any obvious errors Andreas Kohlbecker
02:49 PM task #7550: Move UserHelper from cdm-vaadin into cdmlib
The `VaadinUserHelper` which was registering itself in the vaadin session was causing problems in the cdm-webapp.war ... Andreas Kohlbecker

07/12/2018

10:26 PM feature request #7348: RegistrationDTO webservices implemented
**TODO:**
remove the following fields from DTO Serialization:
* `typeDesignations`
* `orderdTypeDesignationWo...
Andreas Kohlbecker
10:23 PM task #7527: CdmEntityDaoBase.*ByParam() public and also available in the service layer
please review.
Andreas Kohlbecker
10:19 PM task #7550 (Resolved): Move UserHelper from cdm-vaadin into cdmlib
close if the changes are not causing any obvious errors Andreas Kohlbecker
02:15 PM task #7550 (Closed): Move UserHelper from cdm-vaadin into cdmlib
The `AbstractController` already duplicates some of the methods offered by the UserHelper. The UserHelper for now is... Andreas Kohlbecker
05:44 PM task #7553 (Closed): move TypeDesignationSetManagerIT to cdmlib
the `TypeDesignationSetManager` has been moved (#7348, commit:6e858cb7) to cdmlib but the according test still reside... Andreas Kohlbecker
05:31 PM bug #7552 (Closed): use TaggedText.entityReference to add style and uuid to html tags
TaggedText as provided by the cdmlib not provides TypedEntityReference information in the property TaggedText.entityR... Andreas Kohlbecker
05:06 PM feature request #7551 (Closed): TypeDesignationSetManager provides summary as TaggedText
TypeDesignationSetManager can provide a summary of the ordered type designations. For the dataportal the summary shou... Andreas Kohlbecker
04:58 PM feature request #6967 (Resolved): RegistrationController identifier endpoints implemented
Applied in changeset commit:cdmlib|f9bb9711ec4265c5862d4616477c24fc9a16fa2f. Andreas Kohlbecker
04:56 PM feature request #6967: RegistrationController identifier endpoints implemented
the endpoint `/registration/{localID}` is not needed, is it? Andreas Kohlbecker
02:07 PM task #7546: Better guidance for users when creating registrations for exising names
Dieser 2. Satz ist vielleicht wirklich überflüssig, er beleuchtet lediglich die Hintergünde zu Satz 1.
Ok, streich...
Andreas Kohlbecker
01:48 PM task #7546: Better guidance for users when creating registrations for exising names
Brauchen wir alle 3 Sätze. Der 2. ist schwer verständlich. Bin alles mit unserer native Speakerin durchgegangen. Ihr ... Wolf-Henning Kusber
12:39 PM feature request #7549 (Closed): Show tooltip for data aggregation in character matrix
When hovering over any cell of the summary row a tooltip should show up giving a brief statistical summary of the cur... Patrick Plitzner
10:16 AM feature request #7548 (In Progress): RegistrationWorkingSetEditor loads slowly with big working sets
The RegistrationWorkingSetEditor not only loads slowly when initially opened also when saving a popup editor the work... Andreas Kohlbecker

07/11/2018

03:47 PM task #7527 (Resolved): CdmEntityDaoBase.*ByParam() public and also available in the service layer
Applied in changeset commit:cdmlib|51ee66dc3a639019afbb58811e32c98e0f186b12. Andreas Kohlbecker
03:43 PM task #7527: CdmEntityDaoBase.*ByParam() public and also available in the service layer
... also `public Pager<T> page(Class<? extends T> clazz, String param, String queryString, MatchMode matchmode, List... Andreas Kohlbecker
03:04 PM task #7527 (In Progress): CdmEntityDaoBase.*ByParam() public and also available in the service layer
I implemented `public Pager<T> pageByRestrictions(Class<? extends T> clazz, String param, String queryString, MatchMo... Andreas Kohlbecker
01:31 PM bug #7547 (Closed): ToManyRelatedEntitiesComboboxSelect buttons enabled even if the containig editor is readOnly
fixed! Andreas Kohlbecker
01:31 PM bug #7547 (Resolved): ToManyRelatedEntitiesComboboxSelect buttons enabled even if the containig editor is readOnly
Applied in changeset commit:cdm-vaadin|8a1add900f82f756d5df22205144a50b0deca0cb. Andreas Kohlbecker
01:13 PM bug #7547 (Closed): ToManyRelatedEntitiesComboboxSelect buttons enabled even if the containig editor is readOnly
see this screenshot for example:
![](picture507-1.png)
Andreas Kohlbecker
01:07 PM task #7546: Better guidance for users when creating registrations for exising names
done and ready for review.
When reviewing please have extra critical eyeball on the text close to the bottom of t...
Andreas Kohlbecker
01:04 PM task #7546 (Resolved): Better guidance for users when creating registrations for exising names
Applied in changeset commit:cdm-vaadin|cf9c36f82e17e2f5fb613ef6132994544c523a81. Andreas Kohlbecker
11:56 AM task #7546 (In Progress): Better guidance for users when creating registrations for exising names
A dialog is not the best solution, adding the required ui elements to the footer section of the workingset editor is ... Andreas Kohlbecker

07/10/2018

05:32 PM bug #7545 (Closed): IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
perfekt! Wolf-Henning Kusber
04:39 PM bug #7545 (Resolved): IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Applied in changeset commit:cdm-vaadin|af8ec722535f95fcccdc5f4fd4562238987d300a. Andreas Kohlbecker
03:56 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
I reproduced this issue.
Duplicate cdm entities only exist after pressing the save button for the new typedesigna...
Andreas Kohlbecker
02:58 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
The aftereffects disappeared after restarting the cdm-remote instance. So these secondary problems where most probabl... Andreas Kohlbecker
02:30 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Hallo Henning,
durch den ersten Fehler wurde eine Registrierung erzeugt, die keine TypeDesignation hatte. Das sie ...
Andreas Kohlbecker
02:30 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Und wenn man nach diesem Identifier sucht gibt es auch eine Fehlermeldung [#!list/inProgress]:
~~~
java.lang.Null...
Andreas Kohlbecker
02:29 PM bug #7545: IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Hallo,

nach dem Fehler, konnte ich keine neuen existierenden Namen auswählen (alter Fehler)
nach aus und einlogg...
Andreas Kohlbecker
02:29 PM bug #7545 (Closed): IllegalStateException: Multiple representations ... when saving first typeDesignation for name less Registration
Henning reported this error which happened while creating a registration for the existing name *Rhopalodia hirudinifo... Andreas Kohlbecker
03:46 PM bug #7331: AdvancedBeanInitializer fails to initialize properties of preinitialized beans in the graph in very special situations
Adding exported breakpoints from my eclipse which might help debugging this issue. Andreas Kohlbecker
03:37 PM bug #7523 (Rejected): RegistrationWorkingSetEditor: existing name combobox must only offer names which are not yet registered in phycobank
rejected in favor of #7546 Andreas Kohlbecker
12:04 PM bug #7523: RegistrationWorkingSetEditor: existing name combobox must only offer names which are not yet registered in phycobank
The above change has been applied after receiving the below email:
Hallo,

um vorgesehene Registrierungen (Ty...
Andreas Kohlbecker
03:35 PM task #7546 (Closed): Better guidance for users when creating registrations for exising names
The strategy followed in #7523 effectively blocks creating registrations for existing names, which makes not much sen... Andreas Kohlbecker
12:07 PM feature request #7348 (In Progress): RegistrationDTO webservices implemented
Andreas Kohlbecker
11:15 AM bug #7544 (Closed): Dragging a misapplication onto itself throws an exception in name editor
When dragging and dropping a misapplication onto itself in the taxon name editor the following exception is thrown an... Patrick Plitzner
10:57 AM bug #7538: Concurrent editing transaction strategy: Taxon turned into synonym by other user prior to saving taxon which was modified in editor
This could also be related to the same problem of concurrent editing:
"...mal wieder ein hübscher kleiner Fehler b...
Patrick Plitzner
10:48 AM bug #7543 (New): Name Editor does not auto-scroll during dragging
Hallo,
bei langen Synonymlisten scrolled die Liste nicht nach oben, wenn man ein Synonym dem Namen oder einem ande...
Patrick Plitzner
10:42 AM bug #7542 (Closed): Move synonym of homotypical group to taxon does not move the homotypical group correctly
Hallo,
wir stoßen in neue Bug-Sphären vor.
Sophia hat versucht, im NameEditor die Reihenfolge der Synonyme zu k...
Patrick Plitzner
10:36 AM bug #7541 (Closed): Insufficient rights lead to missing focus in name editor
WGB:
wir haben angefangen die Iresines einzugeben. Auf Sophias Rechner traten dabei merkwürdige Fehler auf, und zw...
Patrick Plitzner
10:34 AM bug #7540 (New): RemoteAccessException when changing taxon to synonym in taxon navigator
"Hallo,
ich arbeite über Eduroam im Haus. Im Taxonomic Tree ändere ich den Status auf Synonym, dann langes Warten ...
Patrick Plitzner
10:31 AM bug #7539 (New): Synonym drag and drop sometimes does not refresh correctly
* one case is described in the parent ticket
* another case: "nach Synonym-Accepted Swap im NameEditor und anschließ...
Patrick Plitzner

07/09/2018

06:25 PM bug #7505 (Feedback): IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
@Andreas K.: Could you please test again if the multi rep exception still occurs? I re-enabled the parallel loading b... Patrick Plitzner
06:02 PM bug #7538 (New): Concurrent editing transaction strategy: Taxon turned into synonym by other user prior to saving taxon which was modified in editor
** Originally reported as:**
Liebes Edit-Team,
Manchmal erscheint dieser Fehler, wenn man nach Eingabe der Type...
Andreas Kohlbecker
03:36 PM bug #7537 (Rejected): Taxeditor can not connect to restarted, added cdm instance
After adding and starting, stopping and restarting the new cdn-server instance cdm_phycobank_production on edit test,... Andreas Kohlbecker
02:37 PM bug #7361 (Feedback): Consistent UI concept for create, new, add, remove, delete, edit buttons
Henning,
what do you think?
Andreas
Andreas Kohlbecker
02:36 PM bug #7361: Consistent UI concept for create, new, add, remove, delete, edit buttons
Another UI concept:
* use add row and remove icons like: ![](picture79-1.png), ![](picture79-2.png) from (https:/...
Andreas Kohlbecker
02:27 PM bug #7361: Consistent UI concept for create, new, add, remove, delete, edit buttons
adding a screenshot of the more consistren UI with the new "create-new" icon:
![](picture29-1.png)
Andreas Kohlbecker

07/06/2018

03:17 PM bug #7531 (Resolved): PermissionDeniedException on flushing registration with modified status even if the user has the required authority
Fixed by implementing solution 1)
@Andreas Müller: can you please review the changes in cdmlib?
Andreas Kohlbecker
12:03 PM feature request #7518 (Resolved): remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner
11:59 AM bug #7535: TeamOrPersonField: remove OK button an select the chosen enitity immediately
implemented and ready for review Andreas Kohlbecker
08:27 AM bug #7535 (Resolved): TeamOrPersonField: remove OK button an select the chosen enitity immediately
Applied in changeset commit:cdm-vaadin|87bbccd430886b5a2b9c744e0dc018e7d6235920. Andreas Kohlbecker
08:02 AM bug #7535 (Closed): TeamOrPersonField: remove OK button an select the chosen enitity immediately

Henning:
Bei Auswahl eines Authors muss OK gedrückt werden, sonst wird eine leere Sektion gespeichert.
Vorschla...
Andreas Kohlbecker

07/05/2018

09:40 PM bug #7534 (Closed): registration list filters preserved in session
Andreas Kohlbecker
09:38 PM bug #7534 (Resolved): registration list filters preserved in session
Applied in changeset commit:cdm-vaadin|1e6c448a39b44580362af902142a2af98cfadf2c. Andreas Kohlbecker
06:30 PM bug #7534: registration list filters preserved in session
storing this data in the session is faster to implement Andreas Kohlbecker
06:01 PM bug #7534 (Closed): registration list filters preserved in session
symptoms caused by this issue:
1. registration list pager loses filters when navigating to other page - critical
...
Andreas Kohlbecker
06:27 PM feature request #7518 (In Progress): remaining issues for usage of NatTable for bulkeditor
Patrick Plitzner
05:59 PM feature request #7533: add typeStatus filter to registration list
Ready for review Andreas Kohlbecker
05:57 PM feature request #7533: add typeStatus filter to registration list
there are a couple of old data sets with typeStatus = null, therefore I am adding the null as filter option Andreas Kohlbecker
05:22 PM feature request #7533 (Resolved): add typeStatus filter to registration list
Applied in changeset commit:cdm-vaadin|56432bdd018d92bebb99ecfdaeca8721d7927416. Andreas Kohlbecker
03:26 PM feature request #7533 (Closed): add typeStatus filter to registration list
The filter options in the registration list view should offer to filter by TypeDesignation.status:
The filter will...
Andreas Kohlbecker
02:14 PM bug #7531: PermissionDeniedException on flushing registration with modified status even if the user has the required authority
Solution 1) still looks like the best option we have. Andreas Kohlbecker
11:53 AM bug #7531 (In Progress): PermissionDeniedException on flushing registration with modified status even if the user has the required authority
Andreas Kohlbecker
10:27 AM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
Andreas Müller wrote:
> shouldn't we close this as a kind of duplicate for #6321? With reverting #6321 this problem ...
Patrick Plitzner
07:59 AM bug #7222: Phycobank UI improve labels
Andreas Kohlbecker wrote:
> [Answer by Walter]
>
> Also nur Namen ab der Rangstufe Genus sind „uninomials“, finde...
Andreas Kohlbecker
07:55 AM bug #7222: Phycobank UI improve labels
Hallo,

dann schließe ich mich gerne der allgemeinen Definition an. Habe es noch mal nachgelesen und Walter hat Re...
Andreas Kohlbecker
07:55 AM bug #7222: Phycobank UI improve labels
[Answer by Walter]
Hallo,
merkwürdig, da sind Henning und ich (und Nick Turland) nicht der gleichen Meinung:

...
Andreas Kohlbecker

07/04/2018

05:28 PM bug #7524 (Closed): TaxonNameEditor blocks entering new names for genera
Andreas Kohlbecker
05:25 PM bug #7524 (Worksforme): TaxonNameEditor blocks entering new names for genera
works :) Wolf-Henning Kusber
04:49 PM bug #7524 (In Progress): TaxonNameEditor blocks entering new names for genera
Solved and ready for the review. Andreas Kohlbecker
04:42 PM bug #7524 (Resolved): TaxonNameEditor blocks entering new names for genera
Applied in changeset commit:cdm-vaadin|9361ce643c9b449ce33d77973ffe7d6ff9fc80b5. Andreas Kohlbecker
03:29 PM bug #7524 (In Progress): TaxonNameEditor blocks entering new names for genera
Andreas Kohlbecker
04:53 PM feature request #4227: handle generated resources in eclipse workspace
Patrick and I decided that you will be the next tester. Andreas Kohlbecker
04:50 PM feature request #4227: handle generated resources in eclipse workspace
I tried the A+ strategy and it worked fine.
1. git checkout generated-resources
1. run `setup-project.sh`
1. Ins...
Patrick Plitzner
04:48 PM feature request #4227: handle generated resources in eclipse workspace
[Patrick has tested strategy A+, these are his results:]
* had to apply the `/cdmlib-parent/lifecycle-mapping-meta...
Andreas Kohlbecker
03:24 PM bug #7385 (Closed): TaxonNameEditor adapt field visibility to rank
suggestion added to #7222#note-4 Andreas Kohlbecker
01:39 PM bug #7385: TaxonNameEditor adapt field visibility to rank
All is fine, except of one label:
Proposal: change "Infrageneric epithet" to "Infrageneric uninominal"
Reason: ...
Wolf-Henning Kusber
03:22 PM bug #7222 (Feedback): Phycobank UI improve labels
Henning suggested the following for the Name Editor:
* Proposal: change "Infrageneric epithet" to "Infrageneric un...
Andreas Kohlbecker
03:18 PM bug #7528: Allow changing the Registration status in the RegistrationWorkingsetEditor
This is now complete even if it is not yet possible for submitter to change the status due to the bug #7531. But this... Andreas Kohlbecker
03:06 PM bug #7528 (Resolved): Allow changing the Registration status in the RegistrationWorkingsetEditor
Applied in changeset commit:cdm-vaadin|725d1ff22626d3b584606a29756c4be7c750aca1. Andreas Kohlbecker
03:15 PM bug #7531 (Closed): PermissionDeniedException on flushing registration with modified status even if the user has the required authority
User with the Grantedauthority `REGISTRATION(PREPARATION).[UPDATE]{06649467-7c4f-4b8b-98e6-395e4d3af240}` changes th... Andreas Kohlbecker
01:58 PM feature request #7131 (Closed): Registrations ListView has pager to browse the whole result set
Perfekt! Wolf-Henning Kusber

07/03/2018

06:21 PM bug #7528 (In Progress): Allow changing the Registration status in the RegistrationWorkingsetEditor
Andreas Kohlbecker
06:00 PM feature request #7131: Registrations ListView has pager to browse the whole result set
Hi Henning,
the pager is ready, you can review this feature now.
Andreas
Andreas Kohlbecker
05:59 PM feature request #7131 (Resolved): Registrations ListView has pager to browse the whole result set
Applied in changeset commit:cdm-vaadin|1a4c1ca754f6e7d8ce2fb04adab9f14c226b24fc. Andreas Kohlbecker
12:04 PM feature request #4227: handle generated resources in eclipse workspace
Ich habe einen branch **generated-resources** committed in dem alle .classpath and .project files gelöscht sind: com... Andreas Kohlbecker
09:25 AM feature request #4227: handle generated resources in eclipse workspace
auch der Wechsel auf einen anderen Branch klappt mit diesem Setup problemlos:
1. start im develop branch
1. `gi...
Andreas Kohlbecker
09:13 AM feature request #4227: handle generated resources in eclipse workspace
Ich habe heute morgen noch eine radikalere Strategie getestet - Stratregie **A+**:
1. Projekt in Eclipse gelöscht,...
Andreas Kohlbecker
11:22 AM task #7364 (Closed): TaxonNameEditor supports editing of a validated name
Wolf-Henning Kusber
11:16 AM bug #7387 (Closed): TaxonNamePopEditor: ConstraintViolationException on saving a basionym
Wolf-Henning Kusber
11:16 AM bug #7387 (Worksforme): TaxonNamePopEditor: ConstraintViolationException on saving a basionym
Wolf-Henning Kusber
10:26 AM bug #7179 (Closed): Phycobank: set protectedTitleCaches = 1 where Person contains no data
finally fixed! All changes applied to the phycobank production database Andreas Kohlbecker
10:24 AM bug #7179: Phycobank: set protectedTitleCaches = 1 where Person contains no data
fixing protectedNomenclaturalTitleCache
~~~sql
UPDATE AgentBase a SET protectedNomenclaturalTitleCache = 1
...
Andreas Kohlbecker
10:22 AM bug #7179: Phycobank: set protectedTitleCaches = 1 where Person contains no data
fixing
~~~sql
UPDATE AgentBase a SET protectedCollectorTitleCache = 1
WHERE DTYPE = 'Person' AND a.givenNa...
Andreas Kohlbecker
10:10 AM bug #7179 (In Progress): Phycobank: set protectedTitleCaches = 1 where Person contains no data
This only has been fixed for protectedTitleCache. The flags protectedCollectorTitleCache and protectedNomenclaturalTi... Andreas Kohlbecker
09:44 AM bug #7529 (Closed): Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
The ROLE_PUBLISH was not yet in the database and thus was created using the Taxeditor GrantedAuthority Create Dialog.... Andreas Kohlbecker

07/02/2018

11:01 PM feature request #4227: handle generated resources in eclipse workspace
Hiermit ist mein Monster-Feedback #4227#note-7 bis #4227#note-10 zu Ende.
und ich bin der Meinung, dass `eu.etaxon...
Andreas Kohlbecker
10:55 PM feature request #4227: handle generated resources in eclipse workspace
also nochmal die Strategie (A) mit m2 plugin aber ganz von vorn und unter Einbeziehung der bisherigen Erkentnisse:
...
Andreas Kohlbecker
10:31 PM feature request #4227: handle generated resources in eclipse workspace
... Mist ich hatte das "Set as Target Platform" vergessen, sonst hätte es wohl funktioniert, dies habe ich leider ers... Andreas Kohlbecker
09:58 PM feature request #4227: handle generated resources in eclipse workspace
... das Problem ist offenbar, dass eclipse die maven source folder nicht erkennt und und `eu.etaxonomy.taxeditor.cdml... Andreas Kohlbecker
09:41 PM feature request #4227: handle generated resources in eclipse workspace
1. Projekt in Eclipse gelöscht
1. git workspace komplett ge-cleant mit `git clean -x`
1. `rm eu.etaxonomy.taxeditor...
Andreas Kohlbecker
08:26 PM feature request #4227: handle generated resources in eclipse workspace
The only generated resources which still is causing a conflict after setting up the project in eclipse is the
~~~...
Andreas Kohlbecker
01:53 PM bug #7528 (Closed): Allow changing the Registration status in the RegistrationWorkingsetEditor
* Submitters should be able to set the status to **Curation** or to **Rejected**
* Curators should have all status a...
Andreas Kohlbecker
12:57 PM feature request #7131 (In Progress): Registrations ListView has pager to browse the whole result set
Andreas Kohlbecker
12:51 PM bug #7523 (Resolved): RegistrationWorkingSetEditor: existing name combobox must only offer names which are not yet registered in phycobank
Applied in changeset commit:cdm-vaadin|cd993d9573144e244060321aee0c1fb28416a73f. Andreas Kohlbecker

07/01/2018

04:17 PM bug #7525: IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
Andreas Kohlbecker wrote:
> The methods with `List<Criterion> criteria` are offering a different type of flexibility...
Andreas Müller

06/29/2018

05:50 PM bug #7525: IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
The methods with `List<Criterion> criteria` are offering a different type of flexibility than those with `List<Restri... Andreas Kohlbecker
05:17 PM bug #7525 (Resolved): IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
Applied in changeset commit:cdmlib|a33babc0e0b88d6d8ee3968addd7f74bdaa14e93. Andreas Kohlbecker
05:27 PM task #7527 (Feedback): CdmEntityDaoBase.*ByParam() public and also available in the service layer
Hi Andreas,
what do you think about exposing these methods to the public?
Andreas
Andreas Kohlbecker
05:26 PM task #7527: CdmEntityDaoBase.*ByParam() public and also available in the service layer
I renamed the methods so that the more general an versatile methods have the shorter name. Andreas Kohlbecker
05:15 PM task #7527 (Closed): CdmEntityDaoBase.*ByParam() public and also available in the service layer
The methods
* `CdmEntityDaoBase.countBy(Class<? extends T> clazz, String param, String queryString, MatchMode matc...
Andreas Kohlbecker
10:33 AM feature request #7517 (New): Make search parameters like wildcards configurable
no, this is purely a taxeditor ticket. The service layer already offers many of these configurations but they can't b... Andreas Müller
10:24 AM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
shouldn't we close this as a kind of duplicate for #6321? With reverting #6321 this problem was "solved" also as far ... Andreas Müller

06/28/2018

05:29 PM task #7526 (New): move IdentifiableDaoBase.findByReferenceTitle() into ReferenceDao
findByReferenceTitle() searches for "title" which only exists in `Reference.class` therefor it makes no sense having ... Andreas Kohlbecker
04:27 PM bug #6282: FSI image viewer not working with https
I am assuming that it will not be possible to make the http://media.bgbm.org/ available under https therefore I am se... Andreas Kohlbecker
04:18 PM bug #6282: FSI image viewer not working with https
This is most probably caused by binding the fsi viewer flash app via http instead of https:
~~~html
<div id="im...
Andreas Kohlbecker
02:46 PM feature request #7517 (Feedback): Make search parameters like wildcards configurable
I guess this is more a cdmlib issue than something to be implemented in the taxeditor. The service methods need to of... Andreas Kohlbecker
02:36 PM bug #7525 (In Progress): IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
Andreas Kohlbecker
02:36 PM bug #7525 (Closed): IdentifiableServiceBase findByTitle(), and listByTitle() methods support cdm Restrictions and Criteria
The methods `findByTitle()` and `listByTitle()` in IdentifiableServiceBase offer `List<Criterion> criteria` as method... Andreas Kohlbecker
12:56 PM task #7274 (Closed): GrantedAuthorityRevokingRegistrationUpdateLister: add the exception handling for failing flush or commit
Andreas Kohlbecker
12:56 PM task #7274 (Resolved): GrantedAuthorityRevokingRegistrationUpdateLister: add the exception handling for failing flush or commit
Applied in changeset commit:cdm-vaadin|4235f40e55e53768f68611ba51dc00721455e92e. Andreas Kohlbecker
12:17 PM bug #7524 (Closed): TaxonNameEditor blocks entering new names for genera
since the implementation of #7338 new genus names can not be entered. Andreas Kohlbecker
12:13 PM bug #7523 (Rejected): RegistrationWorkingSetEditor: existing name combobox must only offer names which are not yet registered in phycobank
The existing name combobox currently offers all names even those which are already registered.
The pager CdmFilterab...
Andreas Kohlbecker
12:06 PM bug #7522: Show warning if the someone has changed data in a registration graph which is not a currently authenticated curator when RegistrationState > PREPARATION
Hi Henning,
we should discuss if this is really a requirement for data consistency.
Andreas
Andreas Kohlbecker
12:06 PM bug #7522 (New): Show warning if the someone has changed data in a registration graph which is not a currently authenticated curator when RegistrationState > PREPARATION
For registrations check if the adjacent name or typedesignation entity graphs have been upated by another user since ... Andreas Kohlbecker
11:55 AM bug #7520: Restore GrantedAuthorities removed by GrantedAuthorityRevokingRegistrationUpdateLister when the regsitration state returns to PREPARATION
The next idea came up during a call with Andreas Müller:
The GrantedAuthorities are deleted as it is at the moment...
Andreas Kohlbecker
10:25 AM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
I guess something went wrong this morning with Redmine I only moved tickets which are "New" or in "Progress", when c... Andreas Kohlbecker
10:12 AM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Isn't this solved (more or less) in 5.1 already? Andreas Müller
10:25 AM feature request #3984 (Closed): Easier reference selection - recently used references
works fine Andreas Müller
09:07 AM feature request #3984 (Resolved): Easier reference selection - recently used references
now the last 6 references are shown in the selection dialog. Katja Luther
10:21 AM feature request #7508 (Closed): Add language information to term representations
This was an mistake, I guess we can close it now, don't you? Andreas Kohlbecker
10:11 AM feature request #7508: Add language information to term representations
This should be solved in 5.1. Why did you move it? Andreas Müller
10:05 AM task #5375: cdm-server without jsvc
next major release is not to be used anymore Andreas Müller
09:57 AM bug #4847: Problem with session attributes for a UI used in different CDM Instances
Fabian can you please have a look on this issue? Andreas Müller
09:01 AM feature request #7463 (Closed): Move taxonnodes should be available for multiple selection
Katja Luther
09:00 AM feature request #7463: Move taxonnodes should be available for multiple selection
we have to have a look why the refresh sometimes does not work, therefore I create a new ticket and close this one (s... Katja Luther
09:00 AM bug #7521 (Closed): refresh of taxonnavigator sometimes does not work for moving taxonnodes
this is a remaining issue of 'Move taxonnodes should be available for multiple selection' (#7463#note-29)
Andreas Mü...
Katja Luther
08:55 AM feature request #7281 (In Progress): Implement bromelian import
Katja Luther
08:10 AM task #4911: improve performance of distributionInfoFor service
Hi Andreas, I am passing this issue to you, since you are in the euro+med sprint, ähhh, long-distance run! Andreas Kohlbecker
12:02 AM bug #7092 (Resolved): Adapt dates in Nicks images after mediaCreated became TimePeriod
Andreas Müller

06/27/2018

07:54 PM bug #7520: Restore GrantedAuthorities removed by GrantedAuthorityRevokingRegistrationUpdateLister when the regsitration state returns to PREPARATION
The first idea of preserving the authorities in an Extension is not applicable since neither Registration nor User ar... Andreas Kohlbecker
03:53 PM bug #7520 (New): Restore GrantedAuthorities removed by GrantedAuthorityRevokingRegistrationUpdateLister when the regsitration state returns to PREPARATION
Currently the `GrantedAuthorityRevokingRegistrationUpdateLister` withdraws GrantedAuthorities from the sumbitter when... Andreas Kohlbecker
04:02 PM feature request #6655 (Rejected): Implement a RegistrationManager with state machine
Andreas Kohlbecker
03:20 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Andreas Müller wrote:
> Partial synonyms are not yet shown by default (at least not for cichorieae on test)
This ...
Andreas Kohlbecker
02:36 PM bug #7478 (Resolved): Fix pro parte synonym search
probably there are open issues that need to be moved to a new ticket. Andreas Müller
02:33 PM feature request #7517: Make search parameters like wildcards configurable
I strongly suggest creating a profound specification for this before anything is being implementing for this issue!
...
Andreas Kohlbecker
09:47 AM feature request #7517 (New): Make search parameters like wildcards configurable
For edaphobase users are used to use whitespace as wildcard.
We should make search parameters project and/or clien...
Andreas Müller
02:28 PM bug #7313 (Closed): eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
new ticket #7519 or remaining clean up.
I think wen can close this issue now. If you don't agree, Andreas, please ...
Andreas Kohlbecker
02:18 PM bug #7313: eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
Andreas Müller wrote:
> This should work.
>
> Personally I would first load/save the voc and then check the terms...
Andreas Kohlbecker
11:31 AM bug #7313 (Feedback): eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
This should work.
Personally I would first load/save the voc and then check the terms and add each term which is n...
Andreas Müller
02:26 PM bug #7519 (New): Avoid static terms
static terms defined in `KindOfUnitTerms` are directly used in other classes:
* RegistrationRequiredDataInserter...
Andreas Kohlbecker
02:14 PM feature request #7439 (Closed): Use NatTable for BulkEditor
close this ticket and created a new one with remaining issues (#7518) Katja Luther
01:40 PM feature request #7439: Use NatTable for BulkEditor
The editing mode of the table caused a widget is disposed exception and no menu was shown.
I reverted these changes ...
Katja Luther
01:12 PM feature request #7439: Use NatTable for BulkEditor
Now, column resizing is disabled which is better then before. However, we should resize the table to window size at t... Andreas Müller
01:11 PM feature request #7439: Use NatTable for BulkEditor
Andreas Müller wrote:
> Using the standard right click menu is cumbersome as clicking on a column cell immediately c...
Andreas Müller
02:12 PM feature request #7518 (Closed): remaining issues for usage of NatTable for bulkeditor
* ~~editable cell content/possibility to copy from a cell content~~
* ~~size of the columns should not be 50/50, but...
Katja Luther
01:38 PM feature request #4101 (Closed): Default value for publish bit of new taxa must be configurable via DB preferences
Seems to work now. Andreas Müller
12:21 PM feature request #4101 (Resolved): Default value for publish bit of new taxa must be configurable via DB preferences
Katja Luther
12:20 PM feature request #4101 (Feedback): Default value for publish bit of new taxa must be configurable via DB preferences
Andreas Müller wrote:
> The preference is not stored in the DB. After reopening the preference view the publish flag...
Katja Luther
11:27 AM feature request #4101 (Resolved): Default value for publish bit of new taxa must be configurable via DB preferences
Katja Luther
10:46 AM feature request #4363 (Feedback): Show more informative message for unsupported specimen structures in specimen bulk editor
Patrick Plitzner wrote:
> Now, a more informative message is shown. The text is generated in the DerivedUnitFacade c...
Andreas Müller
09:21 AM bug #7227 (Worksforme): New name bulk editor shows all menu entries
We can close this ticket because with the NatTable implementation this problem does not exist anymore. Katja Luther

06/26/2018

05:58 PM feature request #4101: Default value for publish bit of new taxa must be configurable via DB preferences
Andreas Müller wrote:
> We may also want to show the new publish flag value in the "new taxon" dialog. But this migh...
Andreas Müller
05:56 PM feature request #4101 (Feedback): Default value for publish bit of new taxa must be configurable via DB preferences
The preference is not stored in the DB. After reopening the preference view the publish flag option is still not set. Andreas Müller
04:20 PM feature request #4101 (Resolved): Default value for publish bit of new taxa must be configurable via DB preferences
Katja Luther
04:20 PM feature request #4101 (Feedback): Default value for publish bit of new taxa must be configurable via DB preferences
Andreas Müller wrote:
> When trying to save I got:
>
> ~~~
> login : admin
> editor version : 5.1.0.20180619145...
Katja Luther
04:11 PM feature request #4101 (Resolved): Default value for publish bit of new taxa must be configurable via DB preferences
Applied in changeset commit:taxeditor|8360c0ff2bbc09ed93a487bd5e7451f197785edf. Katja Luther
05:38 PM bug #7227 (Feedback): New name bulk editor shows all menu entries
Do I understand correctly that the "Set marker" menu item appears due to #7516? If this is the case then we can close... Andreas Müller
04:38 PM bug #7227 (Resolved): New name bulk editor shows all menu entries
create a new ticket for the correct handling of details view, if no entity is selected and close this ticket. (see #7... Katja Luther
05:26 PM feature request #7463 (Feedback): Move taxonnodes should be available for multiple selection
Andreas Müller wrote:
> The refresh issue still exists and is critical. It seems to happen with large subtrees. E.g....
Andreas Müller
04:34 PM feature request #7463 (Resolved): Move taxonnodes should be available for multiple selection
now there are two subtasks: moving taxa and saving/reindexing, showing more subtasks are not really possible. please ... Katja Luther
05:12 PM feature request #7464 (Closed): make move Taxonnodes a longrunning task
Seems to be fully implemented. Andreas Müller
04:26 PM feature request #7464 (Resolved): make move Taxonnodes a longrunning task
this should be fixed now, please review Katja Luther
04:38 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Andreas Müller wrote:
> The symbols are still used in incorrect direction. On the side of the "real" taxon (which ta...
Andreas Müller
04:31 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Partial synonyms are not yet shown by default (at least not for cichorieae on test) Andreas Müller
04:30 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Andreas Kohlbecker wrote:
> this is due to a LazyInitializationException occurring in the procession of the requests...
Andreas Müller
02:56 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
The pp synonyms should precede the misapplied names. Currently they come afterwards or the order is undefined. Andreas Müller
02:06 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
this is due to a LazyInitializationException occurring in the procession of the requests like:
http://160.45.63.17...
Andreas Kohlbecker
01:43 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
The same is true for euromed on test!! Andreas Müller
01:42 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
At least in cichorieae test (http://test.e-taxonomy.eu/dataportal/preview/cichorieae/admin/config/cdm_dataportal/sett... Andreas Müller
01:36 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Also, as symbol is not a required field, we may also think about fallbacks in case symbol is NULL.
E.g. (symbol !...
Andreas Müller
01:33 PM feature request #7417 (Feedback): Make pro parte and partial synonym relationships always visible in data portals
The symbols are still used in incorrect direction. On the side of the "real" taxon (which takes the role of the toTax... Andreas Müller
04:37 PM bug #7516 (New): details view has to show empty page if bulk editor has no item selected
Katja Luther
04:37 PM task #7515 (Resolved): TypeDesignationStatusComparator to sort by vocabulary first and then by term order

I stumbled over this when editing possibly invalid data with the Taxeditor:
Opening the "Details View" for a nam...
Andreas Kohlbecker
04:35 PM bug #7514 (Closed): Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
To have a consistent reading we need the current symbol to be the invers symbol as we show usually the inverse relati... Andreas Müller
04:33 PM bug #4362: Some File->New dialogs do not work
do you know, why the specimen are removed from the new menu? Katja Luther
04:29 PM feature request #3534 (Duplicate): Predefine inreference type when adding the inreference to a subreference
Katja Luther
04:29 PM feature request #3534: Predefine inreference type when adding the inreference to a subreference
this is already implemented, see #1606 Katja Luther
04:27 PM feature request #7508: Add language information to term representations
Andreas Kohlbecker wrote:
> LazyInitializationException occurring in the procession of the requests like:
>
> htt...
Andreas Müller
02:08 PM feature request #7508: Add language information to term representations
LazyInitializationException occurring in the procession of the requests like:
http://160.45.63.175/cdmserver/cich...
Andreas Kohlbecker
01:18 PM feature request #7508: Add language information to term representations
i think you can close it! Andreas Kohlbecker
12:58 PM feature request #7508: Add language information to term representations
Should we close the ticket? Andreas Müller
04:00 PM bug #7313: eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
completed.
@a.mueller: please review my implementation
Andreas Kohlbecker
03:59 PM bug #7313 (Resolved): eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
Applied in changeset commit:cdm-vaadin|65d2936da23181f34fe6561dd4ae55c21c81d21b. Andreas Kohlbecker
12:51 PM bug #7313 (In Progress): eu.etaxonomy.cdm.dataInserter.RegistrationRequiredDataInserter add all terms to vocabulary
Andreas Kohlbecker
02:09 PM feature request #6659 (Closed): Show mediaCreated in dataportal
Works well. Andreas Müller
12:55 PM feature request #7285 (Closed): Edaphobase import: implement ranks Cohort, Hyporder
I think this can be closed as long as no other feedback comes. Andreas Müller
12:43 PM bug #7220 (Worksforme): Permission Denied in readonly mode of TypeDesignationEditor
I can not reproduce this issue, it seems as if this has been fixed meanwhile. Andreas Kohlbecker
12:24 PM bug #4847: Problem with session attributes for a UI used in different CDM Instances
This problem can generally be solved by using `vaadin-spring`. With `vaadin-spring` all UI Objects are Spring beans w... Andreas Kohlbecker
12:07 PM bug #4847 (In Progress): Problem with session attributes for a UI used in different CDM Instances
Andreas Kohlbecker
12:04 PM feature request #7439: Use NatTable for BulkEditor
Andreas Müller wrote:
> Having the markers for deduplication (target, candidate) in the text fields is not very comf...
Andreas Müller
12:01 PM feature request #7439: Use NatTable for BulkEditor
Changing the text in a cell for now should not be possible until #7503 is implemented. If NAT tables don't offer such... Andreas Müller
11:58 AM feature request #7439: Use NatTable for BulkEditor
Using the standard right click menu is cumbersome as clicking on a column cell immediately changes the cell into the ... Andreas Müller
11:46 AM feature request #7439: Use NatTable for BulkEditor
Having the markers for deduplication (target, candidate) in the text fields is not very comfortable and scalable. Whe... Andreas Müller
11:37 AM feature request #7439 (Feedback): Use NatTable for BulkEditor
Andreas Müller
11:23 AM feature request #7513 (New): Proper user feedback on attempt to access unpublished taxon
Hi Andreas,

ich frage mich, ob wir die Anzeige für ein unpubliziertes Taxon noch verbessern können, falls doch ma...
Andreas Kohlbecker
09:12 AM feature request #6321 (In Progress): Implement parallel loading + progress bar for loading objects into the bulk editor
Move this to next milestone until it is reactivated Andreas Müller

06/25/2018

10:54 PM feature request #7458 (Resolved): Note field for TaxonName , NameType and SpecimenType editors
fully implemented and ready for the review Andreas Kohlbecker
07:14 PM feature request #7071: Reenable restore functionality
Upps, sorry, I see that this is not a master ticket. However, InProgress or New might still be the better status. Andreas Müller
07:13 PM feature request #7071: Reenable restore functionality
As this is a master ticket only should we switch from Feedback to InProgress? Suits better IMO. Andreas Müller
04:02 PM feature request #7071: Reenable restore functionality
Moving to the next release because it is not critical Patrick Plitzner
07:10 PM bug #7512: Saving in Specimen Tree View creates unwanted scrolling on windows
Please discuss who should be assignee. Maybe better KL as using windows. Andreas Müller
07:07 PM bug #7512 (New): Saving in Specimen Tree View creates unwanted scrolling on windows
Copy from #7418 and #7102
To reproduce the scrolling issue:
* Connect to test-rem_conf_am
* Open Specimen Tr...
Andreas Müller
07:09 PM bug #7418 (Closed): remaining specimen determination details view issues
As the scrolling issue is not related to determination details view I created a new ticket for this issue #7512 and r... Andreas Müller
04:00 PM bug #7418: remaining specimen determination details view issues
moving this to the next release as it is not critical Patrick Plitzner
12:07 PM bug #7418: remaining specimen determination details view issues
This behavior is not reproducable on a Linux machine. On Windows it happens when saving with the "Save" icon but it d... Patrick Plitzner
05:59 PM feature request #4363: Show more informative message for unsupported specimen structures in specimen bulk editor
Now, a more informative message is shown. The text is generated in the DerivedUnitFacade constructor. It is interesti... Patrick Plitzner
05:55 PM feature request #4363 (Resolved): Show more informative message for unsupported specimen structures in specimen bulk editor
Applied in changeset commit:taxeditor|dcf98348abae2de24283207fddb7cb670c6028b6. Patrick Plitzner
04:17 PM bug #7079 (Closed): P2 updates not found
Patrick Plitzner
04:16 PM bug #7079: P2 updates not found
Patrick Plitzner wrote:
> @Andreas K.: Can you test this again. But you need to have a downloaded nightly build ...
Andreas Kohlbecker
03:59 PM bug #7079: P2 updates not found
The update did not work for after the release because of a wrong version tag due to the manual update script.
This...
Patrick Plitzner
04:02 PM feature request #7015: Migrate recent menu item
Moving to the next release because it is not critical Patrick Plitzner
03:51 PM feature request #7508: Add language information to term representations
The commits look good at first glance but I had no time to take an in depth look. Andreas Kohlbecker
03:16 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Parallel loading is temporarily deactivated. Fix for #7505 and update problem in name details view Patrick Plitzner
03:14 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
This problem came up with the parallel loading of the search results in the bulk editor. The CDM entities were not co... Patrick Plitzner
01:19 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
Further potential examples
* all names with genus name "Alpha"
* Navicula adminensis A. Boudou & A.A.Gontsch.
...
Andreas Kohlbecker
01:12 PM bug #7511 (Duplicate): LazyInitializationException (LIE) opening Registration Workingset Editor
Andreas Kohlbecker
12:35 PM bug #7511 (Duplicate): LazyInitializationException (LIE) opening Registration Workingset Editor
opening the Registration Workingset Editor for
Braun, A., A new Psammothidium species (Bacillariophyta, Achnanthi...
Andreas Kohlbecker
10:33 AM feature request #7510 (Worksforme): Allow entering aggregated/statistical data for single specimens in character matrix
For some specimens it may be practical to enter statistical data. This should also be possible within or from the cha... Patrick Plitzner
10:18 AM feature request #7509 (Closed): Aggregate and persist specimen character data from character matrix
Currently we only have a temporary aggregation row and the aggregated values are not persisted.
For persisting the...
Patrick Plitzner

06/22/2018

02:37 PM feature request #7508: Add language information to term representations
Can you please review before release? Don't know if this all makes sense and is according to our general webservice s... Andreas Müller
11:33 AM feature request #7508 (Resolved): Add language information to term representations
Applied in changeset commit:cdmlib|75bfa4b6e6d3256d7b325ed9b5415b902e47b998. Andreas Müller
11:30 AM feature request #7508 (Closed): Add language information to term representations
Currently it is not possible to retrieve information which language a representation belongs to.
> [Andreas Mülle...
Andreas Müller
12:29 PM feature request #7439 (Resolved): Use NatTable for BulkEditor
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Comment #7439#note-12: Enabled sorting (Please open a new ticke...
Patrick Plitzner

06/21/2018

09:34 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
Andreas Kohlbecker wrote:
> The name authorship fields are hidden and are populated with data automatically by infer...
Andreas Müller
09:24 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
Andreas Müller wrote:
> I think it is not generally reproducable but in this case.
>
> It is interesting that the...
Andreas Kohlbecker
07:16 PM bug #7505: IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
I think it is not generally reproducable but in this case.
It is interesting that the duplicated person appears 2x...
Andreas Müller
03:38 PM bug #7505 (Closed): IllegalStateException: Multiple representations problem when adding Annotation to name in NameBulkEditor
This exception is reproducible
~~~
login : admin
editor version : 5.1.0.201806211249
server : localhost (localh...
Andreas Kohlbecker
05:34 PM feature request #7507 (New): Advanced "Copy" in bulk editor
Copied from #7439:
* If the whole row has the focus we may want to copy all fields in csv or tsv format.
* For mu...
Patrick Plitzner
05:31 PM feature request #7506 (Duplicate): Allow direct editing bulk editor
For now, it is only possible to edit using the DetailsView.
With the NatTable we can change this behavior and allo...
Patrick Plitzner
04:39 PM feature request #7463: Move taxonnodes should be available for multiple selection
Andreas Müller wrote:
> By the way, moving the 4 children of Charyophyllaceae Juss. results in relativ fast counting...
Katja Luther
01:57 PM feature request #7463: Move taxonnodes should be available for multiple selection
By the way, moving the 4 children of Charyophyllaceae Juss. results in relativ fast counting 25, 50, 75 and 100% and ... Andreas Müller
01:37 PM feature request #7463: Move taxonnodes should be available for multiple selection
The refresh issue still exists and is critical. It seems to happen with large subtrees. E.g. I moved Charyophyllaceae... Andreas Müller
03:56 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
secured TaxonPortalController.doGetFromNameRelations and doGetToNameRelations Andreas Müller
03:40 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
secured TaxonPortalController.doGetMedia and doGetSubtreeMedia
Andreas Müller
09:56 AM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
I updated the ws-endpoint-usage.ods spread sheet by the information from the issue description.
There are now only...
Andreas Kohlbecker
11:46 AM feature request #7464 (Feedback): make move Taxonnodes a longrunning task
The jobs still appear in the Progress Monitor View even if they finished already. Is this wanted?
I compared with ...
Andreas Müller

06/20/2018

09:37 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
Andreas Kohlbecker wrote:
> first of all I analyzed the logfile on the production server and created a statistics on...
Andreas Müller
12:04 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
Hi Andreas,
first of all I analyzed the logfile on the production server and created a statistics on all webservic...
Andreas Kohlbecker
12:24 PM feature request #7439: Use NatTable for BulkEditor
Comment #7439#note-9: Focus loss is fixed
Comment #7439#note-11: Rendering problem is fixed
Comment #7439#note-12: ...
Patrick Plitzner
10:49 AM feature request #7439: Use NatTable for BulkEditor
Patrick Plitzner wrote:
> Comment #7439#note-12: Enabled sorting (Please open a new ticket specifying which addition...
Andreas Müller
10:37 AM feature request #7439: Use NatTable for BulkEditor
Patrick Plitzner wrote:
> Comment #7439#note-7: Cell text is left aligned
Great! Looks much better now.
One m...
Andreas Müller
10:31 AM feature request #7439: Use NatTable for BulkEditor
Andreas Müller wrote:
> For multi-select copy is not yet possible but might be a very nice feature (E.g. for copy an...
Andreas Müller
10:22 AM feature request #7439: Use NatTable for BulkEditor
Andreas Müller wrote:
> Copying parts of the titleCache within the table is not possible. This is a regression compa...
Andreas Müller
09:51 AM feature request #7439: Use NatTable for BulkEditor
Patrick Plitzner wrote:
> Comment #7439#note-13: Could not reproduce this behavior. Which bulk editor did you use? O...
Andreas Müller
09:47 AM feature request #7439: Use NatTable for BulkEditor
Also the problem is not necessarily related to opening multiple editors. But this is how you can easily reproduce the... Andreas Müller
09:39 AM feature request #7439: Use NatTable for BulkEditor
Patrick Plitzner wrote:
> Comment #7439#note-11: I can reproduce this as well when opening the third editor. Questio...
Andreas Müller
09:31 AM feature request #7439: Use NatTable for BulkEditor
Comment #7439#note-7: Cell text is left aligned
Comment #7439#note-11: I can reproduce this as well when opening the...
Patrick Plitzner
12:23 PM bug #7504 (New): Contradictory markers created when using bulk editor
steps to reproduce
1. Open any bulk editor
1. Add a marker to one element with "yes"
1. Add the same marker to t...
Patrick Plitzner
11:00 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Patrick Plitzner wrote:
> And this definitely is a problem which happens because of the re-searching. But we can res...
Andreas Müller
10:58 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Patrick Plitzner wrote:
> Ah, ok. This is a misunderstanding of the terms we used. For me (and code-wise), the **foc...
Andreas Müller
10:50 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
See also #7439#note-29 for sorting with pre-sorted columns. Andreas Müller
09:30 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Ah, ok. This is a misunderstanding of the terms we used. For me (and code-wise), the **focus** refers to a view or ed... Patrick Plitzner
09:25 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Even worse than the focus loss is that we jump back to first record. This is definitely not acceptable. Andreas Müller
09:04 AM feature request #6321 (Feedback): Implement parallel loading + progress bar for loading objects into the bulk editor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Critical: setting focus does not work after reloading.
> >
...
Andreas Müller
08:22 AM feature request #6321 (Resolved): Implement parallel loading + progress bar for loading objects into the bulk editor
Patrick Plitzner
08:22 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Andreas Müller wrote:
> Critical: setting focus does not work after reloading.
>
> E.g. after saving the focus i...
Patrick Plitzner
10:24 AM feature request #7503 (New): Make cells in bulk editor editable
Copied from #7439:
By the way, changing data within the columns may become an option now. E.g. changing the specif...
Andreas Müller
10:16 AM feature request #7502 (Closed): Add further columns to bulk editor
As a start we could always add id, uuid, created, updated. But if possible there should be a way to hide this columns... Andreas Müller
09:06 AM feature request #7464: make move Taxonnodes a longrunning task
please review Katja Luther
08:43 AM bug #7085 (In Progress): cdmserver logfiles getting too big, use RollingFileAppender
Andreas Kohlbecker
08:37 AM bug #7498 (Closed): ClassCastException on saving popup editor for validated name
Andreas Kohlbecker

06/19/2018

06:37 PM bug #7498: ClassCastException on saving popup editor for validated name
Eingabe fehlerfrei, Ticket kann geschlossen werden, Danke! Wolf-Henning Kusber
04:21 PM bug #7498: ClassCastException on saving popup editor for validated name
Hallo Henning,
das Problem ist behoben. Du kannst nun testen.
Andreas
Andreas Kohlbecker
04:15 PM bug #7498 (Resolved): ClassCastException on saving popup editor for validated name
Applied in changeset commit:cdm-vaadin|c43b6a2e7af9d79dae1d83d573d528c619892e85. Andreas Kohlbecker
04:13 PM bug #7498 (In Progress): ClassCastException on saving popup editor for validated name
Andreas Kohlbecker
04:10 PM bug #7498 (Closed): ClassCastException on saving popup editor for validated name

ei einer Validierung, Referenz eingebunden. Zurück zu validiertem Namen, dort Speicherfehler.
VG
Henning
~~~
...
Andreas Kohlbecker
06:09 PM feature request #4101: Default value for publish bit of new taxa must be configurable via DB preferences
We may also want to show the new publish flag value in the "new taxon" dialog. But this might be another ticket. Andreas Müller
06:07 PM feature request #4101: Default value for publish bit of new taxa must be configurable via DB preferences
When I set to "Don't set publish flag" the new child taxon still has publish flag = true. Also inheriting from parent... Andreas Müller
05:50 PM feature request #4101 (Feedback): Default value for publish bit of new taxa must be configurable via DB preferences
When trying to save I got:
~~~
login : admin
editor version : 5.1.0.201806191452
server : test.e-taxonomy.eu (e...
Andreas Müller
05:30 PM bug #7472 (Closed): lazy loading exception for MAN with type specimen
Saving works now and I also could not reproduce the old LLE anymore (though difficult to test).
=> close ticket.
Andreas Müller
04:22 PM bug #7472: lazy loading exception for MAN with type specimen
please review Katja Luther
04:18 PM bug #7472 (Resolved): lazy loading exception for MAN with type specimen
Applied in changeset commit:taxeditor|f63b9efba7c845673c35fd732e4cba7056c081ce. Katja Luther
03:54 PM bug #7472 (Feedback): lazy loading exception for MAN with type specimen
Now, changes in misapplied names and pro parte synonyms are not persisted anymore so I have to reopen tickets. If thi... Andreas Müller
05:13 PM task #3560 (Resolved): Withheld unpublished taxa from webservice used in E+M dataportal
I still want to unify the handling of unpublished a bit, but maybe you can already start testing if there some servic... Andreas Müller
05:04 PM feature request #7501 (New): Deduplicate MANs and pro parte synonyms in portal results
Currently, if searching for a MAN//ppSyn which is related to >1 accepted taxon, the search shows 2 (or more) equal en... Andreas Müller
05:02 PM feature request #7464: make move Taxonnodes a longrunning task
now the longrunning task can be canceled Katja Luther
04:28 PM bug #7500 (Closed): Can't open both related accepted taxa of reused MAN
In E+M we do have the misapplied taxon "*Hedysarum confertum* sec. Greuter & al." (uuid= fd76aa0c-f4ca-484e-ab2c-9bcb... Andreas Müller
04:25 PM bug #7499 (Closed): NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel
works as expected Katja Luther
04:13 PM bug #7499: NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel
please review Andreas Müller
04:13 PM bug #7499 (Resolved): NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel
Applied in changeset commit:taxeditor|2ac7f4b62186854c15bd2fff8666873a6d853ae5. Andreas Müller
04:11 PM bug #7499 (Closed): NPE when trying to open a taxon which belongs to 2 taxon nodes and cancel

~~~
login : admin
editor version : 5.1.0.201806191201
server : test.e-taxonomy.eu (edit-test) / euromed
schema ...
Andreas Müller
03:49 PM bug #7478 (In Progress): Fix pro parte synonym search
Andreas Müller
01:25 PM task #7497: Dokument and add guides and hints to the UI
[Henning wrote]:
Durch die Validierung ist es nicht mehr möglich, das Species-Epitheton neu einzugeben.
D.h. ein...
Andreas Kohlbecker
01:12 PM task #7497 (Rejected): Dokument and add guides and hints to the UI

## TaxonNameEditor
* when mode VALIDATE_AGAINST_HIGHER_NAME_PART is enabled: "register new name if the needed ge...
Andreas Kohlbecker
01:13 PM task #7338: Validate taxon name against the higher taxon name
Wolf-Henning Kusber wrote:
> Fehler in #10 behoben, aber... #7497#note-3
Andreas Kohlbecker
11:55 AM task #7338: Validate taxon name against the higher taxon name
Fehler in #10 behoben, aber... Wolf-Henning Kusber
11:59 AM feature request #7496 (Closed): TaxonNodes in cdm_taxontree can either link to taxon or reference search result pages
Currently clicking on a taxon name in the classification tree as rendered by the cdm_taxontree leads to the according... Andreas Kohlbecker
11:54 AM feature request #7495 (Closed): Registration page implemented
A cdm entity node type for `Registration`
----
implemented, example url: http://test.e-taxonomy.eu/dataportal/pre...
Andreas Kohlbecker
11:51 AM feature request #7494 (Closed): RegistrationSearch implemented
The RegistrationSearch will allow searching for Registrations by
* TaxonName (like search with wildcard)
* Regist...
Andreas Kohlbecker
11:40 AM feature request #6985 (Closed): display Registration metadata in footnotes
is solved Andreas Kohlbecker
11:37 AM feature request #6985: display Registration metadata in footnotes
for example http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/taxon/f48b4b22-0625-4820-ad82-abf12... Andreas Kohlbecker
10:49 AM bug #7482 (Closed): TaxonNameEditor relpacedSynonym not set after adding or editing the related name
Andreas Kohlbecker
10:49 AM bug #7482: TaxonNameEditor relpacedSynonym not set after adding or editing the related name
test OK Wolf-Henning Kusber

06/18/2018

08:34 PM bug #7493: Review all references to SynonymRelationshipTypes and adapt code if needed
Probably this is clear anyway but just if not I want to mention that SynonymRelationshipTypes are more or less still ... Andreas Müller
05:51 PM bug #7493: Review all references to SynonymRelationshipTypes and adapt code if needed
Cleaning the code in which the SynonymRelationshipTypes constants are used requires analysis of various code parts a... Andreas Kohlbecker
04:43 PM bug #7493 (New): Review all references to SynonymRelationshipTypes and adapt code if needed
SynonymRelationshipTypes habe been renamed to SynonymType in commit:fbeefcaf
The dataportal references the terms by...
Andreas Kohlbecker
08:23 PM feature request #7157 (Rejected): interim solution to mark pro parte synonyms in the dataportal
This interims solution was meant for the time when synonyms still had a pro parte/partial flag. Now this is handled v... Andreas Müller
04:20 PM feature request #7157 (Feedback): interim solution to mark pro parte synonyms in the dataportal
Andreas Kohlbecker
04:19 PM feature request #7157: interim solution to mark pro parte synonyms in the dataportal
There is no proParte Flag in the TaxonBase or in the Synonym class. Is this issue still relevant? Andreas Kohlbecker
05:32 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
finally done and ready for reviewing Andreas Kohlbecker
05:31 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible in data portals
Applied in changeset commit:cdm-dataportal|f95ba88b3d58a16df1a8eb013900268d66e0139d. Andreas Kohlbecker
05:13 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
As these new TaxonRelationshipTypes already are available in the production systems the accoring settings may already... Andreas Kohlbecker
04:21 PM feature request #7417 (In Progress): Make pro parte and partial synonym relationships always visible in data portals
I forgot about updating the default settings regarding the pp synonyms Andreas Kohlbecker
03:46 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals
Hi Andreas,
this is fixed now, please review.
Andreas
Andreas Kohlbecker
03:41 PM feature request #7417 (Resolved): Make pro parte and partial synonym relationships always visible in data portals
Applied in changeset commit:cdm-dataportal|baebfef3f130d5b72a4f5a2d44ba41e89e7531ea. Andreas Kohlbecker
05:14 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
Comment #6321#note-13: I tried opening the progress view several times and never saw this exception.
Comment #6321#n...
Patrick Plitzner
03:40 PM feature request #7492 (New): Withheld unpublished taxa from webservice used in other webservices
for open issues see #3560 and copy open issues to **this** ticket before starting.
BaseListController:
* doP...
Andreas Müller
03:35 PM feature request #7491 (New): [MASTER] Withheld unpublished taxa from webservice results and in DAOs
see also #1780, #3740, #3739
Andreas Müller
03:31 PM feature request #4363 (Feedback): Show more informative message for unsupported specimen structures in specimen bulk editor
So can we use the above suggestion as message? The current message is still not really correct or at least too unspec... Andreas Müller
02:56 PM bug #7486 (Closed): Fulltext taxon and name search not correct for Synonym based queries
Andreas Müller
01:41 PM bug #7486: Fulltext taxon and name search not correct for Synonym based queries
This works now for synonyms, for misapplied names and for common names. Andreas Kohlbecker
02:53 PM bug #7418 (Feedback): remaining specimen determination details view issues
The resizing issue seems to be solved now.
To reproduce the scrolling issue:
* Connect to test-rem_conf_am
* O...
Andreas Müller
02:40 PM task #7338: Validate taxon name against the higher taxon name
please test again, as the test server was not up to date when you did the last
test.
Andreas Kohlbecker
02:25 PM bug #7489 (Worksforme): ClassCastException clicking on edit refernce in
this issue really was due to my outdated editor installation. Andreas Kohlbecker
01:50 PM bug #7489 (Feedback): ClassCastException clicking on edit refernce in
please always test with the latest TaxEditor version. You are using 201806110837 which is not compatible with the lat... Andreas Müller
01:07 PM bug #7489: ClassCastException clicking on edit refernce in
Error is reproducible Andreas Kohlbecker
01:03 PM bug #7489 (Worksforme): ClassCastException clicking on edit refernce in
* open Taxon Picris rhagadioloides (L.) Desf., Tabl. Ecole Bot.: 89. 1804
* Activate MA "Picris rhagadioloides"
* ...
Andreas Kohlbecker
01:58 PM bug #7488: IllegalStateException: Multiple representations .. problem on saving Taxon with misapplied name
Note: the above exceptions occurred with a 7 days old TaxEditor. Andreas Müller
01:57 PM bug #7488: IllegalStateException: Multiple representations .. problem on saving Taxon with misapplied name
Katja, do we have a ticket for those MultRep exception that appeared after last time changing the CDM Cache code?
...
Andreas Müller
01:06 PM bug #7488: IllegalStateException: Multiple representations .. problem on saving Taxon with misapplied name
I could not reproduce this error a second time. Andreas Kohlbecker
01:03 PM bug #7488 (New): IllegalStateException: Multiple representations .. problem on saving Taxon with misapplied name
* Open Picris rhagadioloides (L.) Desf., Tabl. Ecole Bot.: 89. 1804 in the TaxonEditor
* Open details for misaplied ...
Andreas Kohlbecker
01:53 PM bug #7490 (Duplicate): Set published flag on subtree misses out misapplied names
duplicates #7450 Andreas Müller
01:36 PM bug #7490 (Duplicate): Set published flag on subtree misses out misapplied names
I set the publish flag on the whole Cichorieae Standart Classification.
The publish flags of misapplied names are st...
Andreas Kohlbecker
01:53 PM feature request #7422 (Closed): Set nom. illeg as default in NomenclaturalStatusType ComboBox
Katja Luther
01:38 PM feature request #7422 (Feedback): Set nom. illeg as default in NomenclaturalStatusType ComboBox
seems to work now.
Can you still add the last changeset and then close the ticket?
Andreas Müller
11:49 AM feature request #7422 (Resolved): Set nom. illeg as default in NomenclaturalStatusType ComboBox
now, the correct status for nom. illeg. is shown in name editor, please review Katja Luther
01:03 PM bug #7472 (Closed): lazy loading exception for MAN with type specimen
I could not created an exception anymore with my test data. However, I did not test with a copy from production so it... Andreas Müller
11:52 AM feature request #7010 (Closed): Adapt handlers for multiple selection in e4 views
I tested the navigator handlers and they seem to work (except for problems which are probably not related to this tic... Andreas Müller
11:51 AM feature request #7463: Move taxonnodes should be available for multiple selection
in classification combo, the classification of the first selected node is preselected, now. Katja Luther
10:05 AM feature request #7463: Move taxonnodes should be available for multiple selection
Katja Luther wrote:
> Open issues:
>
> * Don't move (grand)child nodes of selected parents to the top level.
> ...
Katja Luther
 

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