Activity

From 05/13/2018 to 06/11/2018

06/11/2018

06:50 PM bug #7469 (Closed): Updated script for individualCount column type in Postgres: Andreas Müller
06:49 PM bug #7469 (Resolved): Updated script for individualCount column type in Postgres: Applied in changeset commit:cdmlib|e82fdff4901ef8a8f99fffb1460cb143cd770567. Andreas Müller
06:19 PM bug #7469 (Closed): Updated script for individualCount column type in Postgres: The ColumnTypeChanger in update script does not work as expected for Postgres.
It throws exceptions that the opera... Andreas Müller
06:20 PM bug #7468 (Closed): Updated script for mediaCreated does not work for PostGreSQL: Andreas Müller
03:36 PM bug #7468 (Resolved): Updated script for mediaCreated does not work for PostGreSQL: Applied in changeset commit:cdmlib|870bdcfa2c6d2c6575ae87c56c9b9b2a17aa6745. Andreas Müller
03:03 PM bug #7468 (Closed): Updated script for mediaCreated does not work for PostGreSQL: In "Copy mediaCreated to new columns" the cast from timestamp to string does not work Andreas Müller
04:57 PM bug #7418: remaining specimen determination details view issues: Now, the element is resized after editing.
But I could not reproduce the scrolling bug. Patrick Plitzner
04:56 PM bug #7418 (Resolved): remaining specimen determination details view issues: Applied in changeset commit:taxeditor|5e9ddd814e4727cce615ee85e7454060357fda3c. Patrick Plitzner
04:08 PM bug #7467: taxon name parts lookup method with support for wildcard searches: After discussing this with Andreas Müller we decided to create another more dedicated lookup method which won't load ... Andreas Kohlbecker
01:27 PM bug #7467 (Closed): taxon name parts lookup method with support for wildcard searches: implement a taxon name parts lookup method in the dao and service layer with support for wildcard searches.
If a n... Andreas Kohlbecker
12:35 PM bug #6296: Simple search for common names returns duplicates: duplicates are no longer returned, so this issue can in principle be closed, however, as last step cleaning up commen... Andreas Kohlbecker
12:24 PM feature request #4363 (Resolved): Show more informative message for unsupported specimen structures in specimen bulk editor: I don't have a test DB where there is a DerivedUnit with multiple FieldUnits.
But I added the possibility to show a ... Patrick Plitzner

06/08/2018

06:02 PM bug #7351 (Worksforme): LIE (LazyInitializationException) when opening SpecimenTypeDesignationWorkingsetEditor: This problem no longer occurs, it apparently has been solved meanwhile. Andreas Kohlbecker
05:57 PM feature request #7253 (Duplicate): TaxonNameEditor mode replaced synonym: Andreas Kohlbecker
05:57 PM feature request #7363 (Duplicate): TaxonNameEditor supports replaced synonyms: Andreas Kohlbecker
03:46 PM task #7364 (Resolved): TaxonNameEditor supports editing of a validated name: this is complete now an can be tested. Andreas Kohlbecker
03:30 PM task #7364: TaxonNameEditor supports editing of a validated name: Hallo Andreas,

anbei die fünf most-relevanten Codes (sind auch in EDIT):

Greuter, W.R., McNeill, J., Barrie, ... Andreas Kohlbecker
03:23 PM task #7466 (New): Use markers to identify references for ICBN or other codes: 1. Use the MarkerType NOMENCLATURAL_RELEVANT which has been prepared already
2. **cdmlib**: extend the `IIdentifiabl... Andreas Kohlbecker
02:25 PM bug #7465 (New): adapt test to the change in move taxon operation: the test for moveTaxon in navigator needs to adapted to the fact that it is now a long running task and the result we... Katja Luther
12:13 PM feature request #7464 (Closed): make move Taxonnodes a longrunning task: moving a taxonnode is espacially for a set of nodes an expensive operation and therefore it should be a long running ... Katja Luther
12:11 PM feature request #7463: Move taxonnodes should be available for multiple selection: at the moment moving taxon node is only available for a single node, we should provide it also for a set of nodes. Katja Luther
12:10 PM feature request #7463 (Closed): Move taxonnodes should be available for multiple selection: Open issues:
* ~~Don't move (grand)child nodes of selected parents to the top level.~~
* Exception in #7463#not... Katja Luther

06/07/2018

06:45 PM feature request #7461 (Feedback): Add oder by ISSN an ISBN to the PagingProvider for all Reference comboboxes: Henning, can you please create journals with identical title and different issn and test if the sort oder is working? Andreas Kohlbecker
06:43 PM feature request #7461 (Resolved): Add oder by ISSN an ISBN to the PagingProvider for all Reference comboboxes: Applied in changeset commit:cdm-vaadin|e32daf11e2a1d6947e525bb2e42e99f124e02b38. Andreas Kohlbecker
05:57 PM feature request #7461 (Closed): Add oder by ISSN an ISBN to the PagingProvider for all Reference comboboxes: This has been intended as a quick solution to easily distinguish Journals with the same title (printed and digital is... Andreas Kohlbecker
06:05 PM feature request #7462 (Rejected): references in type footnotes are clickable links: In the DataPortal the bibliographic citation of typedesignations is shown in a footnote to the typedesignation.
... Andreas Kohlbecker
05:53 PM feature request #7460 (New): Duplicate button for TypeDesignations in SpecimenTypeDesignationWorkingsetEditor: A button for duplicating type designations is needed in the vaadin Registration-UI SpecimenTypeDesignationWorkingsetE... Andreas Kohlbecker
05:50 PM feature request #7459 (New): ToOneRelatedEntityCombobox for References allow searching also via ISSN and ISBN: Journals sometime are published as digital issue an later on as printed issue. Both have the same title but different... Andreas Kohlbecker
05:44 PM feature request #7458 (Closed): Note field for TaxonName , NameType and SpecimenType editors: Submitters need to add notes the names and type designations they are entering.
There should be one note field onl... Andreas Kohlbecker
04:50 PM bug #7453 (Closed): Registration Workingsets inconsistent for registrations for sections of publications: Andreas Kohlbecker
02:48 PM bug #7453 (Resolved): Registration Workingsets inconsistent for registrations for sections of publications: Applied in changeset commit:cdm-vaadin|a433cf9e6bc18b10bf621cc69a42bf8517998311. Andreas Kohlbecker
03:05 PM feature request #7457 (Closed): E+M: Allow filtering for only published in search: since #3560 it is now possible to search only for published taxa, synonyms, ...
We should allow this filter also i... Andreas Müller
02:39 PM bug #7456 (Duplicate): E+M: NameFacts von ILDIS Daten: Im Portal werden derzeit NameFacts noch direkt hinter z.B. einem Namen/MAN angezeigt. Das führt bei den NameFacts zu ... Andreas Müller
01:24 PM task #7455: [Check] Check all markers for correctnes: some interesting queries:
~~~ sql
SELECT m.markerType_id, dtb.titleCache, count(*) as n
FROM Marker m
INNER JO... Andreas Müller
01:21 PM task #7455 (Resolved): [Check] Check all markers for correctnes: Check if all existing markers are still up-to-date with the current E+M import strategy.
~~~
SELECT flag, dtb.t... Andreas Müller
10:52 AM bug #7454 (New): illegal argument exception for name selection in details view: mail of WB:
beim Eingeben einer langen Liste von Synonymen über die Namensauswahl im Detail-View (die Namen stehen... Katja Luther

06/06/2018

06:32 PM feature request #7010 (Resolved): Adapt handlers for multiple selection in e4 views: Adapted all handlers.
This is pretty cumbersome to review so feel free to test some context menus if you like and th... Patrick Plitzner
05:52 PM bug #7453 (Closed): Registration Workingsets inconsistent for registrations for sections of publications: Opening the Registration Workingset for a Registration which is associated with the Section only shows the Registrati... Andreas Kohlbecker
03:00 PM bug #7452 (Resolved): TitleCache is not correctly set for new Person: Fixed with commit:taxeditor|4b61c8bccb8ea366c1f4f4a49d3e75dff4bd096e Patrick Plitzner
03:00 PM bug #7452 (Closed): TitleCache is not correctly set for new Person: Steps to reproduce
- Open the PersonSelectionDialog e.g. for name authors
- Click on "New Person"
- Enter text ... Patrick Plitzner

06/05/2018

05:54 PM bug #7451 (Resolved): ExternalLinks [ext-links]: update search urls: Applied in changeset commit:cdm-dataportal|522a5b8c5352339b2c9acf22392f6cb48773228d. Andreas Kohlbecker
05:19 PM bug #7451: ExternalLinks [ext-links]: update search urls: The "Search Fairchild Guide To Palms" no longer exists. Therefore I will remove this entry.
Andreas Kohlbecker
11:37 AM bug #7451 (Closed): ExternalLinks [ext-links]: update search urls: The search api of service providers used in the ext-links module have changes.
The module needs to be updated:
--... Andreas Kohlbecker
09:53 AM feature request #7450: Allow setPublish for subtree to include misapplied names and pro parte synonyms: AM:
bei der Suche müssen wir das evtl. noch im Detail definieren.
Mehrere Möglichkeiten gibt es :
1. Er kann... Andreas Müller
09:28 AM feature request #7450: Allow setPublish for subtree to include misapplied names and pro parte synonyms: Maybe we should think about to have a publish flag on the taxonrelationship to avoid influencing another classification? Katja Luther

06/04/2018

08:49 PM feature request #6659: Show mediaCreated in dataportal: This is finally fixed! Andreas Müller, please confirm. Andreas Kohlbecker
08:47 PM feature request #6659 (Resolved): Show mediaCreated in dataportal: Applied in changeset commit:cdm-dataportal|fc95035952cdea4802094a45c56ba635a372718a. Andreas Kohlbecker
06:54 PM bug #4307 (Feedback): User with permission group 'Editor' cannot create new authorteam via wizzard: The UI issue is solved, buttons to create a new Person or Team is available now. But creating a new TeamOrPersonBase ... Andreas Kohlbecker
03:18 PM feature request #7335: Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor: In details view please switch syn. sec. and sec., first comes sec. then syn. sec., be careful to also set the two "d... Andreas Müller
03:15 PM feature request #7335: Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor: Andreas Müller wrote:
> In the second line in the name editor the syn. sec. is shown, not the sec., the later is mor... Andreas Müller
02:01 PM feature request #7335 (Feedback): Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor: In the second line in the name editor the syn. sec. is shown, not the sec., the later is more important and should de... Andreas Müller
03:09 PM feature request #7450 (Closed): Allow setPublish for subtree to include misapplied names and pro parte synonyms: ... and maybe also some other taxa related via taxon concept relations.
Needs some discussion how to handle MANs a... Andreas Müller
02:56 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals: Other example uuids in Nepenthes: cdm_production_caryo_nepenthaceae
~~~ sql
SELECT acc.titleCache, acc.uuid, pp.t... Andreas Müller
01:52 PM feature request #7417: Make pro parte and partial synonym relationships always visible in data portals: IN the attachement you find how currently the default configuration in ...portal/admin/config/cdm_dataportal/settings... Andreas Müller
01:10 PM feature request #5627: Display pro parte (and partial) information in data portal: Not sure if this is really a full duplicate as #7417 is only about showing or not showing pp relationship records at ... Andreas Müller
11:17 AM feature request #5627 (Duplicate): Display pro parte (and partial) information in data portal: this issue duplicates an newer ticket with a more up to date description: #7417 Andreas Kohlbecker
12:15 PM task #2925 (Worksforme): [DISCUSS]Do we need newly created objects for EntityCollectionSection: The createNewElement() is needed to show the new (empty) element in the details view. Patrick Plitzner
12:13 PM bug #7340 (Closed): OderedVocabularies are initialised with DefinedTerms: I tried creating a new term for the above mentioned vocabularies and everything worked fine. Patrick Plitzner
10:18 AM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor: I am currently using a page size of 20 which leads to a quicker refresh of the bulk editor. But of course this will p... Patrick Plitzner
10:13 AM feature request #6321 (Resolved): Implement parallel loading + progress bar for loading objects into the bulk editor: Applied in changeset commit:taxeditor|27a07b9c1e7cf113214a020191f0629e15b38cd3. Patrick Plitzner

06/03/2018

10:42 PM bug #7447: ERS: Fix misapplied name issues for E+M common names.: es gibt einige wenige Common Names, die im Zusammenhang mit einem Misapplied Name genannt werden, bei dem aber der Be... Andreas Müller
10:33 PM bug #7447 (In Progress): ERS: Fix misapplied name issues for E+M common names.: Andreas Müller
07:04 PM bug #7447 (Resolved): ERS: Fix misapplied name issues for E+M common names.: Fix misapplied name issues for E+M common names.
There are 2 issues:
1. BerlinModelCommonNamesImport:341 - Mis... Andreas Müller
10:02 PM bug #7449 (Resolved): E+M: Import common names with no regionFk correctly: Currently it looks they are not imported at all as there is an iteration over the set of regions and for each region ... Andreas Müller
08:35 PM task #7448 (New): Replace auct. reference: Reference with refId = 5959 is an "auct." reference. It should be replaced where possible. Misapplied names automatic... Andreas Müller
03:41 PM task #7446 (New): Check if all extensions are needed: about 560.000 Extensions are currently imported.
We need to check if they are all needed or if some of them are d... Andreas Müller
12:20 PM bug #7340 (Resolved): OderedVocabularies are initialised with DefinedTerms: By definition these terms and there vocabularies should not be ordered. The following attributes are all of type Defi... Andreas Müller
12:13 PM bug #7445 (Resolved): Empty term uri and isoXXX fields should be null: Applied in changeset commit:cdmlib|4dda23ea016633bd5b7282e9598aa3aa0eb47564. Andreas Müller
12:09 PM bug #7445 (Closed): Empty term uri and isoXXX fields should be null: Term URIs are currently loaded as empty strings, not as NULL by DefinedTermBase.readCsv. This should be changed. Also... Andreas Müller

05/26/2018

07:06 PM bug #7079 (Feedback): P2 updates not found: It looks like nightly update does not work anymore in 5.1-Snapshot Andreas Müller
07:01 PM bug #6973 (Closed): Refreshing details and supplemental view: Seems to be fixed (though I still don' understand why the details and supplemental data view need to be white not gra... Andreas Müller
06:47 PM task #6158 (Closed): Update EDIT documentation from svn to git: Seems all to be fixed Andreas Müller

05/25/2018

12:44 PM bug #4307: User with permission group 'Editor' cannot create new authorteam via wizzard: is this still an open issue? Andreas Müller
12:18 PM bug #3788: sort order of search results broken in free-text taxon search: Please test if still an open issue Andreas Müller
12:02 PM feature request #7438 (Closed): implement citation suggestion in dataportal: Andreas Müller
11:27 AM task #7435: Handle also published in correctly: hier eine überarbeitete Version der Excel Datei mit einer 3. Tabelle, die einige Fälle enthält, bei denen im Detail N... Andreas Müller
11:03 AM task #7435: Handle also published in correctly: anbei eine Datei mit „also published in“ Informationen, die sich noch in Name Notes verstecken.
In der ersten Tabe... Andreas Müller
10:25 AM task #7435: Handle also published in correctly: Hallo Eckhard,
in der angefügten Datei befinden sich alle Name Facts vom Type „also published in“. Sind nicht so v... Andreas Müller
10:04 AM task #7435: Handle also published in correctly: Cleaned up Name.notes duplicates (1 exception send to ERS) Andreas Müller
11:06 AM feature request #7437 (New): Handle also published in data portal: implementation (and decision if necessary at all) depends on result of #7435 Andreas Müller
12:39 AM bug #6938 (In Progress): Tasks before a new Euro+Med import: Andreas Müller

05/24/2018

12:35 PM task #7436 (New): Handling verbatimDate in E+M import: The verbatimDate is stored e.g. in RefDetails notes in different formats.
These need to be parsed (see also #7429)... Andreas Müller
10:58 AM task #7435 (In Progress): Handle also published in correctly: Some names do have a second nomenclatural reference (or at least a second reference). This is usually handled as name... Andreas Müller

05/23/2018

03:08 PM task #7407 (In Progress): [E+M] Remove synonym autonyms: Andreas Müller
03:06 PM task #7407: [E+M] Remove synonym autonyms: AM: Im Anhang findest du die entsprechende Liste. Sie ist recht strikt, sollte also nur solche Fälle beinhalten, in d... Andreas Müller
02:35 PM task #7407: [E+M] Remove synonym autonyms: A strict SQL:
~~~ sql
SELECT n.FullNameCache, pt.StatusFk, pt.PTRefFk, pt.*, n.*
FROM PTaxon pt INNER JOIN Name ... Andreas Müller
02:20 PM feature request #7434 (New): while importing sequences it should be possible to download fasta file: for the blast search we need fasta files of the sequences to create the BLAST DB. Therefore it should be possible to ... Katja Luther
02:15 PM feature request #7433 (New): new service method to get specimen by genetic AccessionNumber: Katja Luther
12:36 PM feature request #7433 (Resolved): new service method to get specimen by genetic AccessionNumber: Applied in changeset commit:cdmlib|f271620621cdd711088426b54e38849230129afc. Katja Luther
12:14 PM feature request #7433 (Resolved): new service method to get specimen by genetic AccessionNumber: to get the specimen for a given genetic accession number (as result of blast search) Katja Luther

05/18/2018

03:14 PM feature request #6659 (Resolved): Show mediaCreated in dataportal: set to resolved to do review Andreas Müller
03:04 PM feature request #6574: Error Log view not available in Eclipse 4: Yes, I move this to the current milestone Patrick Plitzner
02:42 PM feature request #6574: Error Log view not available in Eclipse 4: After we have decided to not fully migrate to e4 can we use e3 Log view again? Andreas Müller
02:32 PM feature request #7432 (In Progress): Show default login only if the account has not been changed: Copied from #4256:
Some time ago we discussed this issue and decided that the login dialog should mention the defa... Andreas Müller
02:28 PM bug #6241 (Feedback): fix java doc problems in projects: We should discuss if it is really necessary to fix the broken links. I also took a quick look and it seems that in mo... Patrick Plitzner
02:22 PM feature request #6932: Migrate bulk editor: Multi selection is generally handled in #7010.
Are there any other open issues?
When closing *this* ticket plea... Andreas Müller
01:21 PM feature request #6932 (Feedback): Migrate bulk editor: I think we should first create a ticket with the remaining issues before closing. Otherwise the information will get ... Andreas Müller
02:19 PM feature request #6565 (Resolved): [MASTER] Eclipse 4 Migration: Andreas Müller
02:06 PM feature request #7431 (New): [MASTER] remaining E4 migration issues: Patrick Plitzner
01:53 PM feature request #7071 (Feedback): Reenable restore functionality: Can you leave a note why this is rejected and who decided? Are there technical problems related? Andreas Müller
01:45 PM feature request #6572 (Closed): Adapt/Add Wiki pages for e4 development: I adjusted the text about the rcp target platform.
General information about e4 development can be better found onli... Patrick Plitzner
01:41 PM feature request #7015 (Feedback): Migrate recent menu item: Can you leave a note why this is rejected and who decided? Are there technical problems related? Andreas Müller
01:07 PM bug #7430 (Resolved): New team members should be added at the end of the member list: Applied in changeset commit:taxeditor|82a57421606db7ee734704b0b0d79b1de30daa2d. Patrick Plitzner
01:06 PM bug #7430 (Closed): New team members should be added at the end of the member list: Patrick Plitzner
12:13 PM bug #6220: Improve definition of orphaned taxon and synonym: I don't understand why you moved this to the current milestone. The ticket is mostly fixed. The open issues are more ... Andreas Müller
12:01 PM bug #6220: Improve definition of orphaned taxon and synonym: moving to current milestone while closing #5616 Patrick Plitzner
12:02 PM feature request #5616 (Closed): Add the"Open in..." menu to taxon search: Patrick Plitzner
11:51 AM bug #3161 (Closed): Term Editors are no singletons: works fine Andreas Müller
11:45 AM feature request #4227 (Feedback): handle generated resources in eclipse workspace: @Andreas K.: Could you test again if it is possible to delete the `.classpath` file from taxeditor.cdmlib and run "Up... Patrick Plitzner
11:43 AM bug #7393 (Closed): Fix regressions resulting from cascade removal from relationships in TaxEditor: Seems to work for me. I tested in name editor and bulk editor with new and existing taxa/names and got no exceptions ... Andreas Müller
11:31 AM feature request #7421 (Closed): Implement verbatim date for references in TaxEditor: Seems to work as expected. Maybe in future we can also unify VerbatimTimePeriodElement and TimePeriodElement. But thi... Andreas Müller
10:57 AM feature request #7421: Implement verbatim date for references in TaxEditor: In 291c69d6 I merged DateDetailsSection and VerbatimDetailsSection and replaced distinction by boolean value "include... Andreas Müller
11:19 AM bug #4566 (Worksforme): check encoding for labels in DetailsView: looks fine on linux as well Patrick Plitzner
11:12 AM feature request #6752 (Closed): Add verbatimDate: Andreas Müller
10:08 AM feature request #7429 (Closed): Improve parsing and formatting for VerbatimTimePeriod: In #6752 only very basic parsing and formatting functionality has been implemented for verbatimDate. Parsing supports... Andreas Müller
09:52 AM feature request #7283: Improvements for alternative identifier search: As this is important for E+M I moved it to 5.1 Andreas Müller
09:48 AM bug #2450: DateTime field - Old values do not get deleted if you enter a new value to the parse field: We discussed and the wanted behavior is as it should be. Freetext field and parse field were mixed in the discussion. Andreas Müller
09:47 AM bug #2450 (Closed): DateTime field - Old values do not get deleted if you enter a new value to the parse field: Andreas Müller
09:38 AM feature request #6800: Allow all filters for DwCA export in TaxEditor: Katja Luther wrote:
> the subtree filter should be available now, please review. To filter on taxa, you have to clic... Andreas Müller
09:36 AM feature request #7193: Implement area filter and rank filter in TaxEditor for exports: Sorry, I thought taxon node filter is also part of this ticket, but it isn't. Reverted last changes. Andreas Müller
07:39 AM bug #5279: Deleting taxon node is slow in some cases: we should have a look, if this is still an open issue. Katja Luther

05/17/2018

09:28 PM feature request #6394: Allow additional taxon relationships in TaxEditor to be handled similar to misapplications: It is already possible to create pro parte synonyms, implementation for related taxa might be very similar Andreas Müller
09:26 PM feature request #7421: Implement verbatim date for references in TaxEditor: we may want to move the field up, below end date Andreas Müller
10:21 AM feature request #7421 (Resolved): Implement verbatim date for references in TaxEditor: Andreas Müller
09:23 PM feature request #7422 (In Progress): Set nom. illeg as default in NomenclaturalStatusType ComboBox: KL: Mmh, doch es wird eigentlich nom illeg ausgewählt und es hat auch funktioniert, aber gerade eben habe ich es auch... Andreas Müller
09:16 PM feature request #7065 (Closed): When updating a subtree the affected and opened taxa are not updated in name editor this needs to be handled: Copied open issues to new ticket. Andreas Müller
03:57 PM feature request #7065: When updating a subtree the affected and opened taxa are not updated in name editor this needs to be handled: remaining issue needs to be handled in next release Katja Luther
09:15 PM feature request #7428 (Closed): Open issues for updating open data while subtree is updated: copied from #7065
* Open name editors are not checked for existing changes. When they are closed changes get lost.... Andreas Müller
05:43 PM feature request #5030 (Duplicate): Implement new dto object for TaxonNavigator: Andreas Müller
04:19 PM feature request #5030 (Closed): Implement new dto object for TaxonNavigator: Katja Luther
02:28 PM feature request #5030 (Resolved): Implement new dto object for TaxonNavigator: Andreas Müller
05:35 PM feature request #5687: search for alternative identifiers: Andreas Müller wrote:
> > In search result the alternative identifier and the titlecache of the reference should be ... Andreas Müller
03:58 PM feature request #5687 (Closed): search for alternative identifiers: Katja Luther
04:34 PM feature request #7427 (Duplicate): Implement pro parte synonyms in TaxEditor: Katja Luther
04:32 PM feature request #7427 (Duplicate): Implement pro parte synonyms in TaxEditor: implement pro parte/partial synonyms in Editor. The details view should be similar to the misapplied name details view Katja Luther
04:29 PM feature request #7336 (Closed): Implement partial misapplied names in TaxEditor: Katja Luther
11:55 AM feature request #7336 (Feedback): Implement partial misapplied names in TaxEditor: This seems to be solved in 5.0 already. Can you please add changeset if possible and then close ticket. Andreas Müller
04:28 PM bug #2450: DateTime field - Old values do not get deleted if you enter a new value to the parse field: I think we should discuss whether this is not the wanted behaviour, because the atomised data are filled by the parse... Katja Luther
04:21 PM bug #7352: review propertyPaths in editor: for synonyms we did it, but we have to review all propertypaths whether they get all informations or maybe too much. Katja Luther
02:23 PM bug #7352 (In Progress): review propertyPaths in editor: I think we already started this Andreas Müller
04:19 PM feature request #2380 (Closed): TaxonNavigator should work with DTO objects instead of full blown cdm instances: Katja Luther
04:18 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm instances: creating a new ticket for the two remaining issues -> #7426 Katja Luther
04:18 PM bug #7426 (New): remaining issues of change of navigator to DTOs: * using the classification selector for "Change accepted to synonym", etc. in the dialog changing the classification ... Katja Luther
04:05 PM feature request #3746 (Closed): Implement time period scope for description elements in TaxEditor: only the space between the time period element and the element above is still open, so I close this ticket. Katja Luther
04:03 PM feature request #5616: Add the"Open in..." menu to taxon search: I think the open questions are already in ticket #6220, so we can close this ticket. Katja Luther
12:29 PM feature request #5616: Add the"Open in..." menu to taxon search: Can we move the open questions to a new ticket and close this ticket and move it back to the original milestone? Andreas Müller
03:56 PM bug #7227: New name bulk editor shows all menu entries: the last menu items come from a not emptied details view. we have to fix this. Katja Luther
02:17 PM feature request #7244 (Resolved): DistributionStatus editor help: Andreas Müller
11:51 AM feature request #7335 (Resolved): Allow editing of pro parte and partial synonyms in the same way as misapplied names in the NameEditor: Andreas Müller
09:43 AM task #7425 (Resolved): Implement VerbatimTimeField for cdm-vaadin and use this in the ReferencePopupEditor: Applied in changeset commit:cdm-vaadin|82522760c827a846568139a38523c2dc91d3f98a. Andreas Kohlbecker

05/16/2018

07:51 PM task #7425 (Closed): Implement VerbatimTimeField for cdm-vaadin and use this in the ReferencePopupEditor: create a common base class for VerbatimTimeField and TimePeriodField Andreas Kohlbecker
03:17 PM bug #7379 (Closed): right click menu of accepted taxa should not show "change to": Andreas Müller wrote:
> The menu entry seems to be correct now.
>
> However, it often happens that the menu entry... Katja Luther
03:16 PM bug #7424 (Closed): right click menu does not show up in name editor: after some operations the right click menu of the accepted taxon does not show up anymore.
for example after delet... Katja Luther
03:13 PM feature request #7411 (Closed): adapt mediaCreated in taxeditor to timePeriod: create a new ticket for refactoring the timePeriod element -> #7423 Katja Luther
12:06 PM feature request #7411 (Feedback): adapt mediaCreated in taxeditor to timePeriod: Works fine.
Online the time part is not yet shown. Feel free to create a new ticket for handling time. Andreas Müller
10:44 AM feature request #7411 (Resolved): adapt mediaCreated in taxeditor to timePeriod: Katja Luther
03:13 PM feature request #7423 (New): refactore the time period element: the time period element needs to be refactored.
* the labels of the dates should be above the dates and only ones
... Katja Luther
02:38 PM feature request #6672 (Closed): Migrate status line: The E4 migration has been done up to a sufficient state.
The migration of the status bar would only make sense if ... Patrick Plitzner
02:35 PM feature request #6932 (Closed): Migrate bulk editor: The E4 migration has been done up to a sufficient state.
Remaining issues should be handled in separate tickets. Patrick Plitzner
02:31 PM feature request #6595 (Closed): Migrate name editor: The E4 migration has been done up to a sufficient state.
Remaining issues should be handled in separate tickets. Patrick Plitzner
02:29 PM feature request #6902 (Closed): Migrate molecular module: The E4 migration has been done up to a sufficient state. Patrick Plitzner
02:15 PM feature request #7007 (Rejected): Migrate IMemento functionality: The E4 migration has been done up to a sufficient state.
This feature was not migrated.
This may be re-visited in #... Patrick Plitzner
02:14 PM feature request #7071 (Rejected): Reenable restore functionality: The E4 migration has been done up to a sufficient state.
This feature was not migrated.
This may be re-visited in #... Patrick Plitzner
02:13 PM feature request #7267 (Rejected): Migrate about dialog: The E4 migration has been done up to a sufficient state.
This feature was not migrated. Patrick Plitzner
02:13 PM feature request #7043 (Rejected): Migrate validation view: The E4 migration has been done up to a sufficient state.
This feature was not migrated. Patrick Plitzner
02:12 PM feature request #7015 (Rejected): Migrate recent menu item: The E4 migration has been done up to a sufficient state.
This feature was not migrated. Patrick Plitzner
02:12 PM feature request #6925 (Closed): Migrate general framework: The E4 migration has been done up to a sufficient state. Patrick Plitzner
02:10 PM feature request #6568 (Closed): Migrate perspectives: I close this ticket as this only occurs in rare cases and it is not critical if other perspectives are shown. The gen... Patrick Plitzner
12:18 PM feature request #6568: Migrate perspectives: Deleting .cdmLibrary solved the problem. Deleting workbench.xmi in installation folder did not. workbench.xmi in home... Andreas Müller
09:42 AM feature request #6568: Migrate perspectives: @AM: or could you do a search for `workbench.xmi` in your installation folder and in your home folder. It seems like ... Patrick Plitzner
08:05 AM feature request #6568: Migrate perspectives: Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > For me the perspective selector do... Patrick Plitzner
02:01 PM bug #3161 (Resolved): Term Editors are no singletons: Applied in changeset commit:taxeditor|2dc06490af06f288639d5c95c409782802edad25. Patrick Plitzner
12:36 PM feature request #7422 (Closed): Set nom. illeg as default in NomenclaturalStatusType ComboBox: for botanical names the default status type should be nom. illeg because it is the most used type. Katja Luther
12:31 PM feature request #6659 (In Progress): Show mediaCreated in dataportal: implemented but seems not to be working as expected. I have no time to do further testing. Andreas Kohlbecker
12:10 PM bug #6973 (Resolved): Refreshing details and supplemental view: Patrick Plitzner
11:33 AM task #7325 (Closed): Taxeditor uses CdmTransientEntityCacher from cdmlib-cache: looks ok now! Andreas Kohlbecker
10:40 AM feature request #7118 (Closed): migrate selection dialogs: Katja Luther wrote:
> Pfeiltasten funktionieren noch nicht so wie beim alten Dialog, d.h. wenn ich Pfeil nach unten ... Katja Luther
10:38 AM feature request #7119 (Closed): implement filter button for selection dialogs: Katja Luther
10:37 AM bug #7393: Fix regressions resulting from cascade removal from relationships in TaxEditor: please review, please also check in bulk editors Katja Luther
12:59 AM feature request #7421 (Closed): Implement verbatim date for references in TaxEditor: Andreas Müller

05/15/2018

04:27 PM feature request #6913 (Closed): Remove e3 parts and dependencies: Closing this ticket now.
Most of the classes that are not used anymore are deleted. Some code cannot be deleted wi... Patrick Plitzner
01:21 PM feature request #6913: Remove e3 parts and dependencies: I will have a quick look if I can remove some e3 code before the release. Most of it is done. Patrick Plitzner
12:25 PM feature request #6913 (In Progress): Remove e3 parts and dependencies: How far is this done? As far as I know you have worked on this during 5.0 a lot. Andreas Müller
04:09 PM task #7420 (Closed): Import for higher taxon graph for phycobank: The higher taxon graph as discussed in #6173 will be imported via spreadsheets whereas we will use the normal implici... Andreas Kohlbecker
03:57 PM feature request #7419 (Closed): Provide example NormalImplicit import file for phycobank higher taxon graph imports: The higher taxon graph as discussed in #6173 will be imported via spreadsheets whereas we will use the normal implici... Andreas Kohlbecker
01:23 PM feature request #7268 (Closed): Re-implement own preference dialog: The preferences are completely migrated. Any remaining issues should be treated in other tickets. Patrick Plitzner
12:23 PM feature request #7268: Re-implement own preference dialog: How far is this implemented already? Should we assign it to the current milestone? Or the next? Percentage done? Andreas Müller
01:20 PM feature request #6672: Migrate status line: The migration has been done in the e4 branch but is still experimental. So in develop nothing has been done. Patrick Plitzner
12:27 PM feature request #6672 (In Progress): Migrate status line: How far is this done? Which target version? Andreas Müller
12:06 PM feature request #6931 (Closed): Migrate uses view: This to me seems to be more or less a duplicate for #6769. Tested the usage perspective and couldn't find problems an... Andreas Müller
12:04 PM bug #6769 (Closed): Usages can not be created anymore in usage perspective: This seems to be fixed all. Andreas Müller
12:04 PM feature request #7102 (Closed): Enable EDIT and DELETE for specimen determinations: Patrick Plitzner
11:43 AM feature request #7102 (Feedback): Enable EDIT and DELETE for specimen determinations: One more related issue: when adding a taxon or name, the according text fields do not change their size but stay in s... Andreas Müller
11:39 AM feature request #7102: Enable EDIT and DELETE for specimen determinations: Patrick Plitzner wrote:
> Can you please check again if the issues last mentioned still exist. I fixed the unintende... Andreas Müller
11:30 AM feature request #7102: Enable EDIT and DELETE for specimen determinations: Patrick Plitzner wrote:
> And what view is scrolled when saving?
The specimen tree editor view, see attachement.
... Andreas Müller
12:03 PM bug #7418 (Closed): remaining specimen determination details view issues: copied from #7102:
One more related issue: when adding a taxon or name, the according text fields do not change th... Patrick Plitzner
11:52 AM feature request #6568: Migrate perspectives: Patrick Plitzner wrote:
> Andreas Müller wrote:
> > For me the perspective selector does also show the "Team Synchr... Andreas Müller
11:52 AM feature request #6568: Migrate perspectives: All the rest seems fine.
Except for the fact, that the view positions are not automatically stored anymore when cl... Andreas Müller
11:51 AM feature request #6568: Migrate perspectives: Andreas Müller wrote:
> For me the perspective selector does also show the "Team Synchronizing" perspective (see att... Patrick Plitzner
11:48 AM feature request #6568: Migrate perspectives: For me the perspective selector does also show the "Team Synchronizing" perspective (see attachment). It would be nic... Andreas Müller
11:19 AM bug #6973: Refreshing details and supplemental view: Andreas Müller wrote:
> >Now, after reconnect the details view and supplemental data is emptied but when clicking on... Andreas Müller
11:09 AM bug #6973 (Feedback): Refreshing details and supplemental view: Andreas Müller wrote:
> >If one adds a new term and then the label of this term is changed, the new label is not ref... Andreas Müller
10:43 AM bug #6526 (Closed): Show types in correct order: OK, the sorting of the designations worked before already. Misunderstanding from my side.
Also the dropdown has th... Andreas Müller
10:35 AM feature request #7417 (Closed): Make pro parte and partial synonym relationships always visible in data portals: Pro parte and partial synonyms will only be handled by concept relations starting in v5.0.
Therefor the 2 concept re... Andreas Müller

05/14/2018

07:54 PM bug #7393 (Resolved): Fix regressions resulting from cascade removal from relationships in TaxEditor: Applied in changeset commit:taxeditor|baace0b5bcb7ea3c8c3532fe4f29c38b227c6302. Katja Luther
07:49 PM bug #7393 (In Progress): Fix regressions resulting from cascade removal from relationships in TaxEditor: Katja Luther
06:22 PM bug #7393 (Resolved): Fix regressions resulting from cascade removal from relationships in TaxEditor: Applied in changeset commit:taxeditor|8f3c6043dd46be77086e2da1243727f3230ea065. Katja Luther
06:01 PM feature request #7275 (Feedback): [DISCUSS] Require email address for Users: Andreas Müller
05:59 PM feature request #6752 (Resolved): Add verbatimDate: Andreas Müller
05:57 PM feature request #6588 (Closed): Add URL and URL comment to OriginalSource / ExternalLink: Andreas Müller
05:49 PM bug #6526 (Resolved): Show types in correct order: Added comparator to combo Patrick Plitzner
04:35 PM bug #6526 (Feedback): Show types in correct order: Still does not work. After model update (updating orderIndex) I still get the old order in UI, see attachement.
Te... Andreas Müller
05:12 PM feature request #7416 (New): OriginalSourceBase.links should be shown in DataPortal: OriginalSourceBase now has a Set of Links (OriginalSourceBase.getLinks()). These should be displayable in the Datapor... Andreas Müller
05:09 PM feature request #7415 (Closed): Implement ExternalLinks for OriginalSources in TaxEditor: OriginalSourceBase now has a Set of ExternalLinks. These should be editable in the TaxEditor. Andreas Müller
05:03 PM bug #6686: Correct handling for chromatograms in dataportal: The class ExternalLink exists now so we discuss if we want to use it here. Andreas Müller
04:58 PM bug #6955: NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading: As #7144 is solved now, we should remove the showing of the class name in case no level exists. All the rest seems to... Andreas Müller
04:53 PM bug #7144 (Closed): Add country as level to all areas of type Country.: Andreas Müller
04:49 PM task #7238 (Closed): Rename lastName and firstName: Andreas Müller
04:48 PM feature request #7276 (Feedback): Make User.email a unique field.: For now I suggest to reject this feature request as long as NULL values are allowed (#7275).
We could only try to ... Andreas Müller
04:44 PM task #7374 (Closed): Set titleCache of feature trees to protected as long as i18n support does not yet exist.: Andreas Müller
04:37 PM feature request #7384 (Closed): Order SpecimenTypeDesignationStatus according to new order in vocabulary: Andreas Müller
04:24 PM bug #4624 (Worksforme): Opening a synonym without a taxon in a classification shows duplicate errors: As far as I remember the ticket was not about orphaned synonyms but about synonyms attached to orphaned taxa.
Thes... Andreas Müller
02:40 PM bug #4624: Opening a synonym without a taxon in a classification shows duplicate errors: Synonyms without taxa can not be found by the search, only by the bulk editor. Katja Luther
04:03 PM bug #7074 (Closed): Use TimePeriod for Media.mediaCreated: Andreas Müller
03:54 PM task #7414 (Resolved): Delete mediaCreatedOld: Andreas Müller
03:46 PM task #7414 (Closed): Delete mediaCreatedOld: it is remaining from #7074
Close only after Nicks data have been updated Andreas Müller
03:39 PM feature request #6943 (Resolved): Allow zoological in-Authors in taxon names: still need parser Andreas Müller
03:38 PM feature request #6943 (Closed): Allow zoological in-Authors in taxon names: Andreas Müller
03:36 PM feature request #7413 (Closed): Make in-Authors editable in TaxEditor for zoological and fungi names: This includes inCombinationAuthor and inBasionymAuthor (but call the later "original name author" or so, as basionym ... Andreas Müller
03:30 PM feature request #6720 (Closed): Make individualCount a string: Andreas Müller
03:23 PM task #6879 (Closed): Update uuid and name for admin user group: Andreas Müller
03:17 PM task #6699 (Closed): Delete term version from CdmMetaData: Andreas Müller
03:03 PM feature request #7412: Allow editing supplemental data for DescriptiveDataSets: DescriptiveDataSets are now IdentifiableEntities #2335 Andreas Müller
03:03 PM feature request #7412 (Closed): Allow editing supplemental data for DescriptiveDataSets: Andreas Müller
02:50 PM feature request #7405 (Closed): Rename WorkingSet to DescriptiveDataSet: Andreas Müller
02:45 PM feature request #7411 (Closed): adapt mediaCreated in taxeditor to timePeriod: Katja Luther
02:45 PM feature request #2335 (Closed): Make WorkingSet IdentifiableEntity: Andreas Müller
01:53 PM bug #7109 (Closed): Rename nom. valid to nom. val.: Andreas Müller
11:04 AM feature request #6867 (Closed): explicitely assign and revoke UPDATE & DELETE permission per enitity in the registration workflow: this seems to be fully implemented and properly working, so the issue can be closed. Andreas Kohlbecker

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