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From 04/27/2018 to 05/26/2018

05/26/2018

07:06 PM bug #7079 (Feedback): P2 updates not found
It looks like nightly update does not work anymore in 5.1-Snapshot Andreas Müller
07:01 PM bug #6973 (Closed): Refreshing details and supplemental view
Seems to be fixed (though I still don' understand why the details and supplemental data view need to be white not gra... Andreas Müller
06:47 PM task #6158 (Closed): Update EDIT documentation from svn to git
Seems all to be fixed Andreas Müller

05/25/2018

12:44 PM bug #4307: User with permission group 'Editor' editor cannot create new authorteam via wizzard
is this still an open issue? Andreas Müller
12:02 PM feature request #7438 (Closed): implement citation suggestion in dataportal
Andreas Müller
11:27 AM task #7435: Handle also published in correctly
hier eine überarbeitete Version der Excel Datei mit einer 3. Tabelle, die einige Fälle enthält, bei denen im Detail N... Andreas Müller
11:03 AM task #7435: Handle also published in correctly
anbei eine Datei mit „also published in“ Informationen, die sich noch in Name Notes verstecken.
In der ersten Tabe...
Andreas Müller
10:25 AM task #7435: Handle also published in correctly
Hallo Eckhard,
in der angefügten Datei befinden sich alle Name Facts vom Type „also published in“. Sind nicht so v...
Andreas Müller
10:04 AM task #7435: Handle also published in correctly
Cleaned up Name.notes duplicates (1 exception send to ERS) Andreas Müller
11:06 AM feature request #7437 (New): Handle also published in data portal
implementation (and decision if necessary at all) depends on result of #7435 Andreas Müller

05/24/2018

12:39 AM bug #6938 (In Progress): Tasks before a new Euro+Med import
Andreas Müller
12:35 PM task #7436 (New): Handling verbatimDate in E+M import
The verbatimDate is stored e.g. in RefDetails notes in different formats.
These need to be parsed (see also #7429)...
Andreas Müller
10:58 AM task #7435 (In Progress): Handle also published in correctly
Some names do have a second nomenclatural reference (or at least a second reference). This is usually handled as name... Andreas Müller

05/23/2018

03:08 PM task #7407 (In Progress): [E+M] Remove synonym autonyms
Andreas Müller
03:06 PM task #7407: [E+M] Remove synonym autonyms
AM: Im Anhang findest du die entsprechende Liste. Sie ist recht strikt, sollte also nur solche Fälle beinhalten, in d... Andreas Müller
02:35 PM task #7407: [E+M] Remove synonym autonyms
A strict SQL:
~~~ sql
SELECT n.FullNameCache, pt.StatusFk, pt.PTRefFk, pt.*, n.*
FROM PTaxon pt INNER JOIN Name ...
Andreas Müller
02:20 PM feature request #7434 (New): while importing sequences it should be possible to download fasta file
for the blast search we need fasta files of the sequences to create the BLAST DB. Therefore it should be possible to ... Katja Luther
02:15 PM feature request #7433 (New): new service method to get specimen by genetic AccessionNumber
Katja Luther
12:36 PM feature request #7433 (Resolved): new service method to get specimen by genetic AccessionNumber
Applied in changeset commit:cdmlib|f271620621cdd711088426b54e38849230129afc. Katja Luther
12:14 PM feature request #7433 (Resolved): new service method to get specimen by genetic AccessionNumber
to get the specimen for a given genetic accession number (as result of blast search) Katja Luther

05/18/2018

03:14 PM feature request #6659 (Resolved): Show mediaCreated in dataportal
set to resolved to do review Andreas Müller
03:04 PM feature request #6574: Error Log view not available in Eclipse 4
Yes, I move this to the current milestone Patrick Plitzner
02:42 PM feature request #6574: Error Log view not available in Eclipse 4
After we have decided to not fully migrate to e4 can we use e3 Log view again? Andreas Müller
02:32 PM feature request #7432 (New): Show default login only if the account has not been changed
Copied from #4256:
Some time ago we discussed this issue and decided that the login dialog should mention the defa...
Andreas Müller
02:28 PM bug #6241 (Feedback): fix java doc problems in projects
We should discuss if it is really necessary to fix the broken links. I also took a quick look and it seems that in mo... Patrick Plitzner
02:22 PM feature request #6932: Migrate bulk editor
Multi selection is generally handled in #7010.
Are there any other open issues?
When closing *this* ticket plea...
Andreas Müller
01:21 PM feature request #6932 (Feedback): Migrate bulk editor
I think we should first create a ticket with the remaining issues before closing. Otherwise the information will get ... Andreas Müller
02:19 PM feature request #6565 (Resolved): [MASTER] Eclipse 4 Migration
Andreas Müller
02:06 PM feature request #7431 (New): [MASTER] remaining E4 migration issues
Patrick Plitzner
01:53 PM feature request #7071 (Feedback): Reenable restore functionality
Can you leave a note why this is rejected and who decided? Are there technical problems related? Andreas Müller
01:45 PM feature request #6572 (Closed): Adapt/Add Wiki pages for e4 development
I adjusted the text about the rcp target platform.
General information about e4 development can be better found onli...
Patrick Plitzner
01:41 PM feature request #7015 (Feedback): Migrate recent menu item
Can you leave a note why this is rejected and who decided? Are there technical problems related? Andreas Müller
01:07 PM bug #7430 (Resolved): New team members should be added at the end of the member list
Applied in changeset commit:taxeditor|82a57421606db7ee734704b0b0d79b1de30daa2d. Patrick Plitzner
01:06 PM bug #7430 (Closed): New team members should be added at the end of the member list
Patrick Plitzner
12:13 PM bug #6220: Improve definition of orphaned taxon and synonym
I don't understand why you moved this to the current milestone. The ticket is mostly fixed. The open issues are more ... Andreas Müller
12:01 PM bug #6220: Improve definition of orphaned taxon and synonym
moving to current milestone while closing #5616 Patrick Plitzner
12:02 PM feature request #5616 (Closed): Add the"Open in..." menu to taxon search
Patrick Plitzner
11:51 AM bug #3161 (Closed): Term Editors are no singletons
works fine Andreas Müller
11:45 AM feature request #4227 (Feedback): handle generated resources in eclipse workspace
@Andreas K.: Could you test again if it is possible to delete the `.classpath` file from taxeditor.cdmlib and run "Up... Patrick Plitzner
11:43 AM bug #7393 (Closed): Fix regressions resulting from cascade removal from relationships in TaxEditor
Seems to work for me. I tested in name editor and bulk editor with new and existing taxa/names and got no exceptions ... Andreas Müller
11:31 AM feature request #7421 (Closed): Implement verbatim date for references in TaxEditor
Seems to work as expected. Maybe in future we can also unify VerbatimTimePeriodElement and TimePeriodElement. But thi... Andreas Müller
10:57 AM feature request #7421: Implement verbatim date for references in TaxEditor
In 291c69d6 I merged DateDetailsSection and VerbatimDetailsSection and replaced distinction by boolean value "include... Andreas Müller
11:19 AM bug #4566 (Worksforme): check encoding for labels in DetailsView
looks fine on linux as well Patrick Plitzner
11:12 AM feature request #6752 (Closed): Add verbatimDate
Andreas Müller
10:08 AM feature request #7429 (Closed): Improve parsing and formatting for VerbatimTimePeriod
In #6752 only very basic parsing and formatting functionality has been implemented for verbatimDate. Parsing supports... Andreas Müller
09:52 AM feature request #7283: Improvements for alternative identifier search
As this is important for E+M I moved it to 5.1 Andreas Müller
09:48 AM bug #2450: DateTime field - Old values do not get deleted if you enter a new value to the parse f...
We discussed and the wanted behavior is as it should be. Freetext field and parse field were mixed in the discussion. Andreas Müller
09:47 AM bug #2450 (Closed): DateTime field - Old values do not get deleted if you enter a new value to th...
Andreas Müller
09:38 AM feature request #6800: Allow all filters for DwCA export in TaxEditor
Katja Luther wrote:
> the subtree filter should be available now, please review. To filter on taxa, you have to clic...
Andreas Müller
09:36 AM feature request #7193: Implement area filter and rank filter in TaxEditor for exports
Sorry, I thought taxon node filter is also part of this ticket, but it isn't. Reverted last changes. Andreas Müller

05/17/2018

09:28 PM feature request #6394: Allow additional taxon relationships in TaxEditor to be handled similar to...
It is already possible to create pro parte synonyms, implementation for related taxa might be very similar Andreas Müller
09:26 PM feature request #7421: Implement verbatim date for references in TaxEditor
we may want to move the field up, below end date Andreas Müller
10:21 AM feature request #7421 (Resolved): Implement verbatim date for references in TaxEditor
Andreas Müller
09:23 PM feature request #7422 (In Progress): Set nom. illeg as default in NomenclaturalStatusType ComboBox
KL: Mmh, doch es wird eigentlich nom illeg ausgewählt und es hat auch funktioniert, aber gerade eben habe ich es auch... Andreas Müller
09:16 PM feature request #7065 (Closed): When updating a subtree the affected and opened taxa are not upda...
Copied open issues to new ticket. Andreas Müller
03:57 PM feature request #7065: When updating a subtree the affected and opened taxa are not updated in na...
remaining issue needs to be handled in next release Katja Luther
09:15 PM feature request #7428 (Closed): Open issues for updating open data while subtree is updated
copied from #7065
* Open name editors are not checked for existing changes. When they are closed changes get lost....
Andreas Müller
05:43 PM feature request #5030 (Duplicate): Implement new dto object for TaxonNavigator
Andreas Müller
04:19 PM feature request #5030 (Closed): Implement new dto object for TaxonNavigator
Katja Luther
02:28 PM feature request #5030 (Resolved): Implement new dto object for TaxonNavigator
Andreas Müller
05:35 PM feature request #5687: search for alternative identifiers
Andreas Müller wrote:
> > In search result the alternative identifier and the titlecache of the reference should be ...
Andreas Müller
03:58 PM feature request #5687 (Closed): search for alternative identifiers
Katja Luther
04:34 PM feature request #7427 (Duplicate): Implement pro parte synonyms in TaxEditor
Katja Luther
04:32 PM feature request #7427 (Duplicate): Implement pro parte synonyms in TaxEditor
implement pro parte/partial synonyms in Editor. The details view should be similar to the misapplied name details view Katja Luther
04:29 PM feature request #7336 (Closed): Implement partial misapplied names in TaxEditor
Katja Luther
11:55 AM feature request #7336 (Feedback): Implement partial misapplied names in TaxEditor
This seems to be solved in 5.0 already. Can you please add changeset if possible and then close ticket. Andreas Müller
04:28 PM bug #2450: DateTime field - Old values do not get deleted if you enter a new value to the parse f...
I think we should discuss whether this is not the wanted behaviour, because the atomised data are filled by the parse... Katja Luther
04:21 PM bug #7352: review propertyPaths in editor
for synonyms we did it, but we have to review all propertypaths whether they get all informations or maybe too much. Katja Luther
02:23 PM bug #7352 (In Progress): review propertyPaths in editor
I think we already started this Andreas Müller
04:19 PM feature request #2380 (Closed): TaxonNavigator should work with DTO objects instead of full blown...
Katja Luther
04:18 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm inst...
creating a new ticket for the two remaining issues -> #7426 Katja Luther
04:18 PM bug #7426 (New): remaining issues of change of navigator to DTOs
* using the classification selector for "Change accepted to synonym", etc. in the dialog changing the classification ... Katja Luther
04:05 PM feature request #3746 (Closed): Implement time period scope for description elements in TaxEditor
only the space between the time period element and the element above is still open, so I close this ticket. Katja Luther
04:03 PM feature request #5616: Add the"Open in..." menu to taxon search
I think the open questions are already in ticket #6220, so we can close this ticket. Katja Luther
12:29 PM feature request #5616: Add the"Open in..." menu to taxon search
Can we move the open questions to a new ticket and close this ticket and move it back to the original milestone? Andreas Müller
03:56 PM bug #7227: New name bulk editor shows all menu entries
the last menu items come from a not emptied details view. we have to fix this. Katja Luther
02:17 PM feature request #7244 (Resolved): DistributionStatus editor help
Andreas Müller
11:51 AM feature request #7335 (Resolved): Allow editing of pro parte and partial synonyms in the same way...
Andreas Müller
09:43 AM task #7425 (Resolved): Implement VerbatimTimeField for cdm-vaadin and use this in the ReferencePo...
Applied in changeset commit:cdm-vaadin|82522760c827a846568139a38523c2dc91d3f98a. Andreas Kohlbecker

05/16/2018

07:51 PM task #7425 (Closed): Implement VerbatimTimeField for cdm-vaadin and use this in the ReferencePopu...
create a common base class for VerbatimTimeField and TimePeriodField Andreas Kohlbecker
03:17 PM bug #7379 (Closed): right click menu of accepted taxa should not show "change to"
Andreas Müller wrote:
> The menu entry seems to be correct now.
>
> However, it often happens that the menu entry...
Katja Luther
03:16 PM bug #7424 (Closed): right click menu does not show up in name editor
after some operations the right click menu of the accepted taxon does not show up anymore.
for example after delet...
Katja Luther
03:13 PM feature request #7411 (Closed): adapt mediaCreated in taxeditor to timePeriod
create a new ticket for refactoring the timePeriod element -> #7423 Katja Luther
12:06 PM feature request #7411 (Feedback): adapt mediaCreated in taxeditor to timePeriod
Works fine.
Online the time part is not yet shown. Feel free to create a new ticket for handling time.
Andreas Müller
10:44 AM feature request #7411 (Resolved): adapt mediaCreated in taxeditor to timePeriod
Katja Luther
03:13 PM feature request #7423 (New): refactore the time period element
the time period element needs to be refactored.
* the labels of the dates should be above the dates and only ones
...
Katja Luther
02:38 PM feature request #6672 (Closed): Migrate status line
The E4 migration has been done up to a sufficient state.
The migration of the status bar would only make sense if ...
Patrick Plitzner
02:35 PM feature request #6932 (Closed): Migrate bulk editor
The E4 migration has been done up to a sufficient state.
Remaining issues should be handled in separate tickets.
Patrick Plitzner
02:31 PM feature request #6595 (Closed): Migrate name editor
The E4 migration has been done up to a sufficient state.
Remaining issues should be handled in separate tickets.
Patrick Plitzner
02:29 PM feature request #6902 (Closed): Migrate molecular module
The E4 migration has been done up to a sufficient state. Patrick Plitzner
02:15 PM feature request #7007 (Rejected): Migrate IMemento functionality
The E4 migration has been done up to a sufficient state.
This feature was not migrated.
This may be re-visited in #...
Patrick Plitzner
02:14 PM feature request #7071 (Rejected): Reenable restore functionality
The E4 migration has been done up to a sufficient state.
This feature was not migrated.
This may be re-visited in #...
Patrick Plitzner
02:13 PM feature request #7267 (Rejected): Migrate about dialog
The E4 migration has been done up to a sufficient state.
This feature was not migrated.
Patrick Plitzner
02:13 PM feature request #7043 (Rejected): Migrate validation view
The E4 migration has been done up to a sufficient state.
This feature was not migrated.
Patrick Plitzner
02:12 PM feature request #7015 (Rejected): Migrate recent menu item
The E4 migration has been done up to a sufficient state.
This feature was not migrated.
Patrick Plitzner
02:12 PM feature request #6925 (Closed): Migrate general framework
The E4 migration has been done up to a sufficient state. Patrick Plitzner
02:10 PM feature request #6568 (Closed): Migrate perspectives
I close this ticket as this only occurs in rare cases and it is not critical if other perspectives are shown. The gen... Patrick Plitzner
12:18 PM feature request #6568: Migrate perspectives
Deleting .cdmLibrary solved the problem. Deleting workbench.xmi in installation folder did not. workbench.xmi in home... Andreas Müller
09:42 AM feature request #6568: Migrate perspectives
@AM: or could you do a search for `workbench.xmi` in your installation folder and in your home folder. It seems like ... Patrick Plitzner
08:05 AM feature request #6568: Migrate perspectives
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > For me the perspective selector do...
Patrick Plitzner
02:01 PM bug #3161 (Resolved): Term Editors are no singletons
Applied in changeset commit:taxeditor|2dc06490af06f288639d5c95c409782802edad25. Patrick Plitzner
12:36 PM feature request #7422 (Closed): Set nom. illeg as default in NomenclaturalStatusType ComboBox
for botanical names the default status type should be nom. illeg because it is the most used type. Katja Luther
12:31 PM feature request #6659 (In Progress): Show mediaCreated in dataportal
implemented but seems not to be working as expected. I have no time to do further testing. Andreas Kohlbecker
12:10 PM bug #6973 (Resolved): Refreshing details and supplemental view
Patrick Plitzner
11:33 AM task #7325 (Closed): Taxeditor uses CdmTransientEntityCacher from cdmlib-cache
looks ok now! Andreas Kohlbecker
10:40 AM feature request #7118 (Closed): migrate selection dialogs
Katja Luther wrote:
> Pfeiltasten funktionieren noch nicht so wie beim alten Dialog, d.h. wenn ich Pfeil nach unten ...
Katja Luther
10:38 AM feature request #7119 (Closed): implement filter button for selection dialogs
Katja Luther
10:37 AM bug #7393: Fix regressions resulting from cascade removal from relationships in TaxEditor
please review, please also check in bulk editors Katja Luther

05/15/2018

12:59 AM feature request #7421 (Closed): Implement verbatim date for references in TaxEditor
Andreas Müller
04:27 PM feature request #6913 (Closed): Remove e3 parts and dependencies
Closing this ticket now.
Most of the classes that are not used anymore are deleted. Some code cannot be deleted wi...
Patrick Plitzner
01:21 PM feature request #6913: Remove e3 parts and dependencies
I will have a quick look if I can remove some e3 code before the release. Most of it is done. Patrick Plitzner
12:25 PM feature request #6913 (In Progress): Remove e3 parts and dependencies
How far is this done? As far as I know you have worked on this during 5.0 a lot. Andreas Müller
04:09 PM task #7420 (Closed): Import for higher taxon graph for phycobank
The higher taxon graph as discussed in #6173 will be imported via spreadsheets whereas we will use the normal implici... Andreas Kohlbecker
03:57 PM feature request #7419 (Closed): Provide example NormalImplicit import file for phycobank higher t...
The higher taxon graph as discussed in #6173 will be imported via spreadsheets whereas we will use the normal implici... Andreas Kohlbecker
01:23 PM feature request #7268 (Closed): Re-implement own preference dialog
The preferences are completely migrated. Any remaining issues should be treated in other tickets. Patrick Plitzner
12:23 PM feature request #7268: Re-implement own preference dialog
How far is this implemented already? Should we assign it to the current milestone? Or the next? Percentage done? Andreas Müller
01:20 PM feature request #6672: Migrate status line
The migration has been done in the e4 branch but is still experimental. So in develop nothing has been done. Patrick Plitzner
12:27 PM feature request #6672 (In Progress): Migrate status line
How far is this done? Which target version? Andreas Müller
12:06 PM feature request #6931 (Closed): Migrate uses view
This to me seems to be more or less a duplicate for #6769. Tested the usage perspective and couldn't find problems an... Andreas Müller
12:04 PM bug #6769 (Closed): Usages can not be created anymore in usage perspective
This seems to be fixed all. Andreas Müller
12:04 PM feature request #7102 (Closed): Enable EDIT and DELETE for specimen determinations
Patrick Plitzner
11:43 AM feature request #7102 (Feedback): Enable EDIT and DELETE for specimen determinations
One more related issue: when adding a taxon or name, the according text fields do not change their size but stay in s... Andreas Müller
11:39 AM feature request #7102: Enable EDIT and DELETE for specimen determinations
Patrick Plitzner wrote:
> Can you please check again if the issues last mentioned still exist. I fixed the unintende...
Andreas Müller
11:30 AM feature request #7102: Enable EDIT and DELETE for specimen determinations
Patrick Plitzner wrote:
> And what view is scrolled when saving?
The specimen tree editor view, see attachement.
...
Andreas Müller
12:03 PM bug #7418 (Closed): remaining specimen determination details view issues
copied from #7102:
One more related issue: when adding a taxon or name, the according text fields do not change th...
Patrick Plitzner
11:52 AM feature request #6568: Migrate perspectives
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > For me the perspective selector does also show the "Team Synchr...
Andreas Müller
11:52 AM feature request #6568: Migrate perspectives
All the rest seems fine.
Except for the fact, that the view positions are not automatically stored anymore when cl...
Andreas Müller
11:51 AM feature request #6568: Migrate perspectives
Andreas Müller wrote:
> For me the perspective selector does also show the "Team Synchronizing" perspective (see att...
Patrick Plitzner
11:48 AM feature request #6568: Migrate perspectives
For me the perspective selector does also show the "Team Synchronizing" perspective (see attachment). It would be nic... Andreas Müller
11:19 AM bug #6973: Refreshing details and supplemental view
Andreas Müller wrote:
> >Now, after reconnect the details view and supplemental data is emptied but when clicking on...
Andreas Müller
11:09 AM bug #6973 (Feedback): Refreshing details and supplemental view
Andreas Müller wrote:
> >If one adds a new term and then the label of this term is changed, the new label is not ref...
Andreas Müller
10:43 AM bug #6526 (Closed): Show types in correct order
OK, the sorting of the designations worked before already. Misunderstanding from my side.
Also the dropdown has th...
Andreas Müller
10:35 AM feature request #7417 (Feedback): Make pro parte and partial synonym relationships always visible...
Pro parte and partial synonyms will only be handled by concept relations starting in v5.0.
Therefor the 2 concept re...
Andreas Müller

05/14/2018

07:54 PM bug #7393 (Resolved): Fix regressions resulting from cascade removal from relationships in TaxEditor
Applied in changeset commit:taxeditor|baace0b5bcb7ea3c8c3532fe4f29c38b227c6302. Katja Luther
07:49 PM bug #7393 (In Progress): Fix regressions resulting from cascade removal from relationships in Tax...
Katja Luther
06:22 PM bug #7393 (Resolved): Fix regressions resulting from cascade removal from relationships in TaxEditor
Applied in changeset commit:taxeditor|8f3c6043dd46be77086e2da1243727f3230ea065. Katja Luther
06:01 PM feature request #7275 (Feedback): [DISCUSS] Require email address for Users
Andreas Müller
05:59 PM feature request #6752 (Resolved): Add verbatimDate
Andreas Müller
05:57 PM feature request #6588 (Closed): Add URL and URL comment to OriginalSource / ExternalLink
Andreas Müller
05:49 PM bug #6526 (Resolved): Show types in correct order
Added comparator to combo Patrick Plitzner
04:35 PM bug #6526 (Feedback): Show types in correct order
Still does not work. After model update (updating orderIndex) I still get the old order in UI, see attachement.
Te...
Andreas Müller
05:12 PM feature request #7416 (New): ExternalLinks should be shown in DataPortal
OriginalSourceBase now has a Set of ExternalLinks. These should be displayable in the TaxEditor.
Maybe they should...
Andreas Müller
05:09 PM feature request #7415 (Closed): Implement ExternalLinks for OriginalSources in TaxEditor
OriginalSourceBase now has a Set of ExternalLinks. These should be editable in the TaxEditor. Andreas Müller
05:03 PM bug #6686: Correct handling for chromatograms in dataportal
The class ExternalLink exists now so we discuss if we want to use it here. Andreas Müller
04:58 PM bug #6955: NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading
As #7144 is solved now, we should remove the showing of the class name in case no level exists. All the rest seems to... Andreas Müller
04:53 PM bug #7144 (Closed): Add country as level to all areas of type Country.
Andreas Müller
04:49 PM task #7238 (Closed): Rename lastName and firstName
Andreas Müller
04:48 PM feature request #7276 (Feedback): Make User.email a unique field.
For now I suggest to reject this feature request as long as NULL values are allowed (#7275).
We could only try to ...
Andreas Müller
04:44 PM task #7374 (Closed): Set titleCache of feature trees to protected as long as i18n support does no...
Andreas Müller
04:37 PM feature request #7384 (Closed): Order SpecimenTypeDesignationStatus according to new order in voc...
Andreas Müller
04:24 PM bug #4624 (Worksforme): Opening a synonym without a taxon in a classification shows duplicate errors
As far as I remember the ticket was not about orphaned synonyms but about synonyms attached to orphaned taxa.
Thes...
Andreas Müller
02:40 PM bug #4624: Opening a synonym without a taxon in a classification shows duplicate errors
Synonyms without taxa can not be found by the search, only by the bulk editor. Katja Luther
04:03 PM bug #7074 (Closed): Use TimePeriod for Media.mediaCreated
Andreas Müller
03:54 PM task #7414 (Resolved): Delete mediaCreatedOld
Andreas Müller
03:46 PM task #7414 (Closed): Delete mediaCreatedOld
it is remaining from #7074
Close only after Nicks data have been updated
Andreas Müller
03:39 PM feature request #6943 (Resolved): Allow zoological in-Authors in taxon names
still need parser Andreas Müller
03:38 PM feature request #6943 (Closed): Allow zoological in-Authors in taxon names
Andreas Müller
03:36 PM feature request #7413 (New): Make zoological inAuthors editable in TaxEditor
This includes inCombinationAuthor and inBasionymAuthor (but call the later "original name author" or so, as basionym ... Andreas Müller
03:30 PM feature request #6720 (Closed): Make individualCount a string
Andreas Müller
03:23 PM task #6879 (Closed): Update uuid and name for admin user group
Andreas Müller
03:17 PM task #6699 (Closed): Delete term version from CdmMetaData
Andreas Müller
03:03 PM feature request #7412: Allow editing supplemental data for DescriptiveDataSets
DescriptiveDataSets are now IdentifiableEntities #2335 Andreas Müller
03:03 PM feature request #7412 (Closed): Allow editing supplemental data for DescriptiveDataSets
Andreas Müller
02:50 PM feature request #7405 (Closed): Rename WorkingSet to DescriptiveDataSet
Andreas Müller
02:45 PM feature request #7411 (Closed): adapt mediaCreated in taxeditor to timePeriod
Katja Luther
02:45 PM feature request #2335 (Closed): Make WorkingSet IdentifiableEntity
Andreas Müller
01:53 PM bug #7109 (Closed): Rename nom. valid to nom. val.
Andreas Müller
11:04 AM feature request #6867 (Closed): explicitely assign and revoke UPDATE & DELETE permission per eni...
this seems to be fully implemented and properly working, so the issue can be closed. Andreas Kohlbecker

05/12/2018

10:15 PM feature request #6867: explicitely assign and revoke UPDATE & DELETE permission per enitity in t...
Can this be closed or set to review?
When not "In Progress" anymore please close according milestone as all other op...
Andreas Müller
10:13 PM task #7216 (Resolved): Import pteridophyta for Cuba checklist
still need to to some cleanup I guess Andreas Müller
09:45 PM bug #4566: check encoding for labels in DetailsView
Is this still an open issue? For me on Windows it looks fine (see attachement) Andreas Müller
09:38 PM bug #4545: Implement TeamOrPersonBaseSelectionDialog
Is this still an open issue? Andreas Müller
09:23 PM feature request #4511: Remove white space below EntitySelectionElement
Is this still an open issue? Can you give information what the EntitySelectionElement is? Andreas Müller
09:10 PM bug #4465: Handle Drag and Drop for Synonyms
This seems to work now, if you move the synonym not to an existing homotypic group. In the later case the group becom... Andreas Müller
08:55 PM bug #4458: Advanced Media DetailsView only implemented for ImageFiles
We definitely need also to be able to define the media type. Andreas Müller
08:48 PM bug #4429: List of available software sites gets overwritten when updating product
Is this still an open issue after hardcoding update site information recently? Andreas Müller
08:33 PM feature request #4363: Show more informative message for unsupported specimen structures in speci...
Is this still an open issue? Andreas Müller
08:29 PM bug #4362 (Feedback): Some File->New dialogs do not work
This seems to be fixed more or less.
* Names can be saved now, the nameCache and authorshipCache are not completel...
Andreas Müller
08:17 PM feature request #4361: Make orphaned taxa editable
Maybe there exist duplicates Andreas Müller
08:03 PM bug #4624: Opening a synonym without a taxon in a classification shows duplicate errors
Is this still an open issue? Andreas Müller
08:01 PM bug #4573 (In Progress): Handle duplicate username, group or grantedAuthority correctly
This seems to be partly fixed as a message saying that the user exists already in the DB pops up. Unfortunately a sec... Andreas Müller
07:56 PM feature request #4227: handle generated resources in eclipse workspace
I remember this has been discussed recently. Is there a duplicate ticket? If not can you put email conversation and r... Andreas Müller
07:44 PM feature request #4022: One click installer for TaxEditor
Not sure if this is still a highly relevant issue as JRE is now included if needed. However, one click install is def... Andreas Müller
07:37 PM feature request #3747: Check if time period is handled correctly for description elements in data...
Time period scope is now implemented in TaxEditor and therefore should be shown in data portals. Andreas Müller
07:28 PM bug #3535: Automatically update descriptive view if content changed
Is this still an open issue?
If yes maybe we can easily fix it with e4 event bus functionality?
Andreas Müller
07:26 PM feature request #3534 (Feedback): Predefine inreference type when adding the inreference to a sub...
I think this has been fixed in the meanwhile. Can you please double check. And link as duplicate to the according tic... Andreas Müller
07:20 PM feature request #3466: Supplemental data for Classification not editable
This is still an open issue, but maybe difficult to solve due to stateless implementation of taxon navigator.
Check...
Andreas Müller
07:16 PM task #7410 (New): Rename "Polytomous Key" to "Single access key" in TaxEditor
... check for all occurrences in UI labels and menus. Andreas Müller
07:06 PM bug #3161: Term Editors are no singletons
This still seems to be an open issue. Or is there a reason for this? Andreas Müller
06:55 PM task #2925 (Feedback): [DISCUSS]Do we need newly created objects for EntityCollectionSection
To me this seems to be fixed, but not sure. Can you please double check in the code? If solved close as worksforme. Andreas Müller
06:28 PM bug #2450: DateTime field - Old values do not get deleted if you enter a new value to the parse f...
Hi Katja, I think you have just recently fixed this issue. Can you please link as duplicate or if not ticket exist ye... Andreas Müller
06:15 PM task #2406: DeterminationEventElement is lacking references
This still seems to be open. It is currently not possible to select a DeterminationEvent for editing supplemental data. Andreas Müller
05:34 PM feature request #1080: Model changes for references, taxonBase, OriginalSource
Hi Andreas, can you please check if the "IndexedEmbedded" is still relevant for us. The according annotation is still... Andreas Müller
04:39 PM bug #7409 (New): Put new Team member to the end of the list when adding
When a new team member is added to the list of team members it shows up on top of the list in the details view. This ... Andreas Müller
03:52 PM feature request #4072 (Closed): [MASTER] Implement import / export / print publishing for remoting
These tasks are all implemented or rejected Andreas Müller
03:46 PM feature request #5030: Implement new dto object for TaxonNavigator
Can you check if this is a duplicate to the new navigator implementation? Link the ticket if yes. Is there any furthe... Andreas Müller
03:40 PM feature request #5021: TreeNodeDropAdapterAssistant should use RemotingMoveTaxonNodeHandler
is this still an open issue? Andreas Müller
03:09 AM feature request #7276 (Resolved): Make User.email a unique field.
Applied in changeset commit:cdmlib|b28a90506f2310c1ebf51dcd2b939ef92814c0be. Andreas Müller

05/11/2018

01:24 AM feature request #7334 (Resolved): Make pro parte and partial synonyms real concept relationships
Andreas Müller
05:56 PM bug #7092 (In Progress): Adapt dates in Nicks images after mediaCreated became TimePeriod
Andreas Müller
05:56 PM bug #7074 (Resolved): Use TimePeriod for Media.mediaCreated
Andreas Müller
04:30 PM feature request #6588 (Resolved): Add URL and URL comment to OriginalSource / ExternalLink
Andreas Müller
01:50 PM feature request #6588 (In Progress): Add URL and URL comment to OriginalSource / ExternalLink
Andreas Müller
01:39 PM feature request #7276 (New): Make User.email a unique field.
Andreas Müller
10:55 AM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
This feature request is also relevant for Vaadin UIs (#6732 and `eu.etaxonomy.cdm.vaadin.ui.RegistrationUIDefaults`).... Andreas Kohlbecker
10:07 AM feature request #4922: GrantedAuthorities not reusable anymore
can someone add some more detail to shed some light on the need for this? Andreas Kohlbecker

05/09/2018

05:56 PM feature request #7408 (In Progress): [E+M] Support for preferred common names in data portal
In the current BM portal the preferred common names are in bold (e.g. http://ww2.bgbm.org/EuroPlusMed/PTaxonDetail.as... Andreas Müller
04:56 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
How far is this implemented in current TaxEditor? I can't see CdmPreferences admin settings yet for these 3 preferenc... Andreas Müller
04:50 PM bug #7396 (Duplicate): distributionInfoFor service fails generating the mapUriParams in general
Andreas Müller
04:43 PM task #7407 (In Progress): [E+M] Remove synonym autonyms
Mail ERS 20.4.2018:
Autonyme sollten eigentlich immer akzeptiert sein. Als Synonyme machen sie wenig Sinn, besonde...
Andreas Müller
04:14 PM bug #7406 (Resolved): [CHECK] Check if all original source names of occurrences are correctly imp...
For Bellis perennis var. hybrida this is currently not the case (see distribution for Bellis perennis in Sicily (ref:... Andreas Müller
01:13 PM bug #7144 (Resolved): Add country as level to all areas of type Country.
Andreas Müller
09:25 AM bug #7144 (In Progress): Add country as level to all areas of type Country.
Andreas Müller
09:21 AM bug #7144: Add country as level to all areas of type Country.
~~~ sql
UPDATE DefinedTermBase
SET areaLevel_id = (SELECT id FROM DefinedTermBase WHERE uuid = ‘xxx’)
WHERE DTYPE ...
Andreas Müller
12:48 PM bug #6973 (Resolved): Refreshing details and supplemental view
all should be fixed now Patrick Plitzner
12:27 PM feature request #7102 (Resolved): Enable EDIT and DELETE for specimen determinations
Can you please check again if the issues last mentioned still exist. I fixed the unintended deletion of the taxon nam... Patrick Plitzner

05/08/2018

01:46 AM bug #7074: Use TimePeriod for Media.mediaCreated
~~~ sql
SELECT *
FROM Media m
WHERE m.mediaCreated IS NOT NULL
~~~
~~~ sql
UPDATE Media
SET titleCache = Rep...
Andreas Müller
01:26 AM feature request #7384 (Resolved): Order SpecimenTypeDesignationStatus according to new order in v...
Andreas Müller
07:22 PM feature request #4922: GrantedAuthorities not reusable anymore
need to check if this is still relevant Andreas Müller
06:42 PM feature request #2335 (Resolved): Make WorkingSet IdentifiableEntity
Andreas Müller
06:03 PM feature request #6752 (In Progress): Add verbatimDate
Andreas Müller
02:55 PM feature request #6720 (Resolved): Make individualCount a string
Andreas Müller
02:03 PM task #6699 (Resolved): Delete term version from CdmMetaData
Andreas Müller
02:02 PM task #6699: Delete term version from CdmMetaData
partly implemented with b7b53c3be705987a8 "initialize CDM 4.9 schema update" in June 2017 => connect code with ticket Andreas Müller
01:59 PM task #6699 (In Progress): Delete term version from CdmMetaData
Andreas Müller
10:16 AM feature request #6916 (In Progress): Link IntextReference to OriginalSource, not Reference
Andreas Müller
09:02 AM feature request #6943 (Resolved): Allow zoological in-Authors in taxon names
Andreas Müller

05/07/2018

01:27 AM task #7238 (Resolved): Rename lastName and firstName
Andreas Müller
11:23 PM feature request #7275: [DISCUSS] Require email address for Users
How to procede. This is not a model change ticket anymore. Should we open a new ticket with new label and close this ... Andreas Müller
11:20 PM feature request #7276 (Resolved): Make User.email a unique field.
Andreas Müller
10:57 PM feature request #7405 (Resolved): Rename WorkingSet to DescriptiveDataSet
Andreas Müller
06:51 PM feature request #7405: Rename WorkingSet to DescriptiveDataSet
DescriptiveSystem we already use for featureTree attribute so DataSet is probably the better name. Andreas Müller
06:15 PM feature request #7405 (Closed): Rename WorkingSet to DescriptiveDataSet
WorkingSet is a too general name. DescriptiveSystem or DescriptiveDataSet better suits the semantics of this class. Andreas Müller
10:56 PM task #7374 (Resolved): Set titleCache of feature trees to protected as long as i18n support does ...
Andreas Müller
05:46 PM task #6879 (Resolved): Update uuid and name for admin user group
Andreas Müller
05:39 PM bug #7096 (Resolved): Add second symbol attribute to DefinedTermBase
Andreas Müller
05:24 PM bug #7109 (Resolved): Rename nom. valid to nom. val.
Andreas Müller
04:08 PM bug #7399 (Closed): Adding taxon nodes to working sets leads to MultipleRepresentationException
Patrick Plitzner
04:00 PM bug #7399 (Feedback): Adding taxon nodes to working sets leads to MultipleRepresentationException
As you have detected the issue and know the background you can probably best decide if you think this ticket is fixed... Andreas Müller
03:47 PM bug #7399 (Resolved): Adding taxon nodes to working sets leads to MultipleRepresentationException
Applied in changeset commit:taxeditor|a92e923ae40f1287477c73ef1a726b0e1325af35. Patrick Plitzner
04:02 PM feature request #6568: Migrate perspectives
The perspectives were not migrated to e4 but I adapted them a little. Maybe just take a quick look if all views are p... Patrick Plitzner
03:34 PM task #7404 (New): Add linux and mac to editor installation documentation
... on https://cybertaxonomy.eu/?q=cdm-setups/individual/editor_installation
Also update system requirements and ...
Andreas Müller
02:54 PM feature request #7403 (New): Add "Open in Bulk Editor (taxon name)" for Taxa/TaxonNodes
Currently you can only open taxa in taxon bulk editor but not in name bulk editor Patrick Plitzner
02:26 PM bug #7402 (New): Editor cannot connect to cdmserver when installed on network drive
This may be a Windows-only issue.
An exception occurs in the login dialog when parsing the cdmlib version:
~~~
...
Patrick Plitzner
01:28 PM feature request #6779: Allow drag&drop for features in GrantedAuthority editor
Andreas Müller wrote:
> Works fine now.
>
> (Only the save button is not disabled after save, but this is another...
Andreas Müller
11:54 AM bug #6769 (Resolved): Usages can not be created anymore in usage perspective
I fixed a ClassCastException in the SaveHandler. This should resolve the focus problem. commit:taxeditor|da6720424e61... Patrick Plitzner
11:53 AM bug #6769: Usages can not be created anymore in usage perspective
Andreas Müller wrote:
> In a general DB I still could not create a new Usage record. Selecting "New Usage" had no ef...
Andreas Müller
11:46 AM bug #6769: Usages can not be created anymore in usage perspective
upps, I just see, I did the last testing with production (4.14.1), not nightly.
However, there is still a minor iss...
Andreas Müller
11:34 AM bug #6318 (Closed): Truncate TextData in FactualData View
Replace LF and CR with " " Patrick Plitzner

05/06/2018

04:03 PM feature request #7076 (Closed): Add Nebula CompositeTable as direct dependency
As there seem to be no issues with updating and with GrantedAuthority editor anymore I guess this ticket is fully fix... Andreas Müller
03:57 PM feature request #6931: Migrate uses view
related to #6769, there are open issues. I will do the final testing once these issues are solved. Andreas Müller
03:55 PM bug #6769: Usages can not be created anymore in usage perspective
The dirty flag does not work correctly yet.
Also as it is not disabled after first save I can save again. This sav...
Andreas Müller
03:48 PM bug #6769: Usages can not be created anymore in usage perspective
In a general DB I still could not create a new Usage record. Selecting "New Usage" had no effect. That might be relat... Andreas Müller
03:12 PM bug #6526 (Closed): Show types in correct order
Seems to work and can be closed. Andreas Müller
02:03 PM bug #6455 (Closed): Remove not possible for country in field/derived unit details view
Works now. Andreas Müller
02:00 PM bug #6318 (Feedback): Truncate TextData in FactualData View
Maybe we can be replace LF still by space " " or even by slash "/" so it is visible that there is some kind of break.... Andreas Müller
01:53 PM feature request #5687 (Feedback): search for alternative identifiers
> In search result the alternative identifier and the titlecache of the reference should be displayed (behind titleCa... Andreas Müller
01:49 PM feature request #6746 (Closed): Implement DetailsView and show SupplementalDataView for Feature T...
Seems to work Andreas Müller
01:34 PM bug #7393 (Feedback): Fix regressions resulting from cascade removal from relationships in TaxEditor
Also adding a synonym called "Abies alba x Pinus beta" to Abies alba still creates the NPE in comment 1. Andreas Müller
01:31 PM bug #7393: Fix regressions resulting from cascade removal from relationships in TaxEditor
When adding Abies alba x Pinus beta as a child of "Abies alba in rem_conf_am" I got the following NPE during save:
...
Andreas Müller
01:24 PM bug #7312 (Closed): some preferences are saved immediately, cancel has no effect
In the ticket it is not documented which preferences were saved immediately so it is difficult to review.
However, I...
Andreas Müller
01:12 PM bug #7379 (Feedback): right click menu of accepted taxa should not show "change to"
The menu entry seems to be correct now.
However, it often happens that the menu entry for the accepted taxon disap...
Andreas Müller
01:01 PM feature request #7401 (New): Guess NomCode for new taxa and names
The "New Taxon" dialog (when opened from search taxon selection dialog, e.g. when selecting a new taxon for a misappl... Andreas Müller
12:57 PM bug #7395 (Closed): Selection of nomenclatural code does not work in new taxon dialog
Andreas Müller

05/04/2018

04:32 PM bug #7397 (Duplicate): euro+med missing wms layer mapping for some areas in the test server
Andreas Müller
07:43 AM bug #7397 (Duplicate): euro+med missing wms layer mapping for some areas in the test server

~~~
[euromed] 2018-05-04 07:18:23,250 INFO qtp1289479439-16 [eu.etaxonomy.cdm.remote.controller.BaseListControll...
Andreas Kohlbecker
04:24 PM bug #7399: Adding taxon nodes to working sets leads to MultipleRepresentationException
we may think about removing the Cascade as it is probably not necessary. However, a multiple-representations exceptio... Andreas Müller
02:45 PM bug #7399 (Feedback): Adding taxon nodes to working sets leads to MultipleRepresentationException
For testing purpose I removed `@Cascade({CascadeType.SAVE_UPDATE,CascadeType.MERGE})` from `Set<TaxonNode> taxonSubtr... Patrick Plitzner
02:40 PM bug #7399 (Closed): Adding taxon nodes to working sets leads to MultipleRepresentationException
Steps to reproduce:
1. Create a working set
1. Add a taxon node to it
1. Save
1. Close WS editor and Re-Connect...
Patrick Plitzner
07:31 AM bug #7396 (Duplicate): distributionInfoFor service fails generating the mapUriParams in general
## Symptom:
The in the Euro+Med portal (edit-test) map for [Saussurea pygmaea](http://test.e-taxonomy.eu/dataporta...
Andreas Kohlbecker

05/03/2018

05:27 PM task #7364 (In Progress): TaxonNameEditor supports editing of a validated name
After discussing this again with Henning it turned out that there will be at maximum only one to consider, even if th... Andreas Kohlbecker
04:09 PM bug #7312: some preferences are saved immediately, cancel has no effect
please review Katja Luther
03:46 PM feature request #5687: search for alternative identifiers
Applied in changeset commit:taxeditor|fd3565e61bb24dabd487b220dd56f95957acb827. Katja Luther
03:45 PM feature request #5687 (Resolved): search for alternative identifiers
The problem was MatchMode.EXACT, now it is BEGINNING and it works as aspected Katja Luther
03:38 PM bug #7327: ReferencePopupEditor: multiple exceptions and problems during creation of a journal se...
Es muss jedes Mal manuell geprüft werden, ob das Cache-Feld gefüllt ist, sonst wird der Autor nicht gespeichert.
In ...
Wolf-Henning Kusber
03:13 PM bug #7333 (Closed): LIE when creating registration for existing name
Test without problems. Wolf-Henning Kusber
02:53 PM bug #7350 (Closed): Collection date is not being saved
Collection date saved, ticked can be closed.
Wolf-Henning Kusber
02:46 PM bug #6330 (Closed): Defined sort order for Mediarepresentations
Andreas Müller wrote:
> This generally seems to work though I tested only for MediaRepresentations.
>
> Did you c...
Patrick Plitzner
02:44 PM bug #6526: Show types in correct order
Looks good and the test in source:cdm-vaadin|src/test/java/eu/etaxonomy/cdm/service/SpecimenTypeDesignationWorkingSet... Andreas Kohlbecker
01:51 PM bug #6526 (Resolved): Show types in correct order
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Yes this is a good idea. I created a related ticket: #7384
>...
Patrick Plitzner
02:44 PM feature request #7363: TaxonNameEditor supports replaced synonyms
Fehlt noch. Wolf-Henning Kusber
12:05 PM feature request #7363: TaxonNameEditor supports replaced synonyms
implementation complete! Henning, please review. Andreas Kohlbecker
12:04 PM feature request #7363 (Resolved): TaxonNameEditor supports replaced synonyms
Applied in changeset commit:cdm-vaadin|226968cb5fc896f5b25f55283e4bfb17272728c3. Andreas Kohlbecker
12:27 PM feature request #6746 (Resolved): Implement DetailsView and show SupplementalDataView for Feature...
Andreas Müller wrote:
> As i18n support does not exist yet (and we maybe need model change for it) we should current...
Patrick Plitzner
12:17 PM bug #6318 (Resolved): Truncate TextData in FactualData View
removed LF and CR Patrick Plitzner
12:07 PM bug #7320 (Closed): dirty flag is not set when clicking "Erneuere Knoten" in Polytomous Keynode e...
delimiter and label adapted. Katja Luther
11:38 AM bug #7379 (Resolved): right click menu of accepted taxa should not show "change to"
Katja Luther
11:37 AM bug #7379: right click menu of accepted taxa should not show "change to"
issues for 2) are done see Revision 74b82668 Katja Luther
11:33 AM bug #7378 (Closed): doubtful in misapplied names incorrect
changed the label and close the ticket. Katja Luther
11:32 AM bug #7378 (Resolved): doubtful in misapplied names incorrect
Applied in changeset commit:taxeditor|4a355ac75a01e034cc6ca0ee0d527f032bf46ea7. Katja Luther

05/02/2018

04:23 PM feature request #7363 (In Progress): TaxonNameEditor supports replaced synonyms
Andreas Kohlbecker
04:20 PM bug #6707 (Duplicate): transient properties managed by ToManyRelatedEntitiesListSelect are not up...
this problem has been solved by using a TaxonNameDTO for the TaxonNameEditor. see #7365, #7386 and commit:cdm-vaadin|... Andreas Kohlbecker
04:12 PM bug #7387 (Feedback): TaxonNamePopEditor: ConstraintViolationException on saving a basionym
this has apparently been solved by fixing #7386.
Hening can you reproduce this issue? Otherwise we can close it as...
Andreas Kohlbecker
04:10 PM bug #7386: TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym
I no longer can reproduce this issue. Henning, can you? Please review. Andreas Kohlbecker
02:34 PM bug #6455 (Resolved): Remove not possible for country in field/derived unit details view
Patrick Plitzner
02:11 PM bug #7392 (Closed): Remove Cascade from relations
seems to work as it should. Katja Luther
02:07 PM bug #7393 (Resolved): Fix regressions resulting from cascade removal from relationships in TaxEditor
adding synonyms and misapplications is working now, also the creation of hybrids. Katja Luther
01:53 PM bug #7395 (Resolved): Selection of nomenclatural code does not work in new taxon dialog
Applied in changeset commit:taxeditor|f1160ece1943f7119ecc23f2f4ebd3ec75bd0f6f. Katja Luther
10:49 AM bug #7395: Selection of nomenclatural code does not work in new taxon dialog
I just see that we have the same problem in details view. Once a name is defined as "Non Viral" it can't be changed a... Andreas Müller
10:47 AM bug #7395 (Closed): Selection of nomenclatural code does not work in new taxon dialog
The "New Taxon" dialog (when opened from search taxon selection dialog, e.g. when selecting a new taxon for a misappl... Andreas Müller
11:38 AM feature request #3746 (Feedback): Implement time period scope for description elements in TaxEditor
Andreas Müller wrote:
> Some minor issues:
>
> 1. Relabel to "Time scope"
> 1. Leave a bit more space to the ele...
Andreas Müller
10:00 AM feature request #3746 (Resolved): Implement time period scope for description elements in TaxEditor
The saving is fixed now.
The other issues are related to the general period part so I create a new ticket for this...
Katja Luther
10:49 AM bug #7391 (Rejected): grant UPDATE for taxonnames temporarily when using a name as basionym
since the cause for #7390 is a different one than originally assumed the solution requested by this issue here become... Andreas Kohlbecker
10:36 AM bug #7391: grant UPDATE for taxonnames temporarily when using a name as basionym
Can this also be closed after #7392 has been fixed? Andreas Müller
10:00 AM feature request #7394 (New): parsing behaviour and layout of the period part issues
The parsing behavior is somewhat unclear. E.g.
* Enter date 1.1.2006 into "Parse" Textbox => according date shows ...
Katja Luther
09:12 AM bug #7390 (Duplicate): possible permission clash when adding basionym
This issue has been clearly solved by fixing #7392, so we can consider this issue being a duplicate of #7392. Andreas Kohlbecker

04/30/2018

12:42 AM bug #7392 (Resolved): Remove Cascade from relations
Andreas Müller
02:06 PM bug #7392 (Closed): Remove Cascade from relations
Classes inheriting from RelationshipBase such as NameRelationship, Hybridrelationship and TaxonRelationship do casca... Andreas Müller
12:36 AM bug #7393: Fix regressions resulting from cascade removal from relationships in TaxEditor
~~~
login : admin
editor version : 4.15.0.201804301448
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
sche...
Andreas Müller
11:24 PM bug #7393 (Closed): Fix regressions resulting from cascade removal from relationships in TaxEditor
See #7392
At some places transient object exceptions are thrown.
Known issues:
* new misapplied name in name...
Andreas Müller
06:44 PM bug #7183 (Feedback): Creating a new reference in bulk editor the focus is not set to the newly c...
Katja Luther wrote:
> now the selected item is not blue, but with a grey box around it to indicate the selection. Ma...
Andreas Müller
11:51 AM bug #7183: Creating a new reference in bulk editor the focus is not set to the newly created entity
now the selected item is not blue, but with a grey box around it to indicate the selection. Maybe this is enough? Katja Luther
11:49 AM bug #7183 (Resolved): Creating a new reference in bulk editor the focus is not set to the newly c...
Applied in changeset commit:taxeditor|74f1490eabf75386834a6f471e79739e4ad8c917. Katja Luther
06:40 PM bug #7300 (Closed): NPE when selecting team member after merge in bulkeditor
Difficult to try to reproduce as the original data are not available. But I tried to create 3 reference records with ... Andreas Müller
06:13 PM task #6158: Update EDIT documentation from svn to git
test after release Andreas Müller
06:03 PM bug #6437 (Closed): Always update titleCache for nomenclatural reference
Seems to work. Also no new reference records (duplicates) were created in the database during testing. Andreas Müller
05:47 PM bug #6219 (Closed): Deleting synonym is persisted immediately, but the editor is set dirty
Seems to work correctly Andreas Müller
05:35 PM feature request #2380 (Feedback): TaxonNavigator should work with DTO objects instead of full blo...
I used the new implementation for different types of testing (other tickets) and in generally it worked very well.
...
Andreas Müller
04:53 PM feature request #3746: Implement time period scope for description elements in TaxEditor
A critical issue: the value is NOT being saved or not being reloaded when reopening the fact !! Andreas Müller
04:50 PM feature request #3746: Implement time period scope for description elements in TaxEditor
Another minor and general issue:
The labels "Start" and "End" are not on the same hight as the according labels fo...
Andreas Müller
04:41 PM feature request #3746 (Feedback): Implement time period scope for description elements in TaxEditor
Some general issue about the time period selection.
The parsing behavior is somewhat unclear. E.g.
* Enter date...
Andreas Müller
04:33 PM feature request #3746: Implement time period scope for description elements in TaxEditor
Some minor issues:
1. Relabel to "Time scope"
1. Leave a bit more space to the element above
1. Keep the element...
Andreas Müller
04:27 PM feature request #5687 (Feedback): search for alternative identifiers
Andreas Müller
04:26 PM feature request #5687: search for alternative identifiers
Currently the identifier search does not work for me.
What I did in rem_conf_am:
1. Created a new Identifier ty...
Andreas Müller
03:03 PM feature request #6806 (Resolved): Add context menu to FeatureTreeEditor
Patrick Plitzner
12:08 PM bug #7390: possible permission clash when adding basionym
I did some further examination of an concrete example for this issue. The problem actually only occurs when adding a ... Andreas Kohlbecker
10:11 AM bug #7390: possible permission clash when adding basionym
Andreas Müller wrote:
> I think we should first check if removing Cascade from RelationBase.from and RelationBase.to...
Andreas Müller
10:09 AM bug #7390 (In Progress): possible permission clash when adding basionym
I think we should first check if removing Cascade from RelationBase.from and RelationBase.to may solve the problem. T... Andreas Müller
09:37 AM bug #7390 (Duplicate): possible permission clash when adding basionym
When a user is only having per entity grants to UPDATE TaxonNames adding a basionym to a taxonname may fail:
* Tax...
Andreas Kohlbecker
09:39 AM bug #7391 (Rejected): grant UPDATE for taxonnames temporarily when using a name as basionym
**see #7390**
Temporarily grant the UPDATE authority to the user performing the operations in the client applicati...
Andreas Kohlbecker

04/28/2018

12:02 AM bug #7388: inconsistent handling of null values passed to addNameRelation methods in TaxonName
fixed errors in new methods commit:287abc0f and commit:676ed1a9 Andreas Müller
05:14 PM bug #7388: inconsistent handling of null values passed to addNameRelation methods in TaxonName
refactoring of other name relationship related methods in commit:7a72a0fe Andreas Kohlbecker
04:45 PM bug #7388: inconsistent handling of null values passed to addNameRelation methods in TaxonName
The `addReplacedSynonym()` again follows a completely different philosophy:
~~~java
//TODO: Check if tru...
Andreas Kohlbecker
04:25 PM bug #7388 (New): inconsistent handling of null values passed to addNameRelation methods in TaxonName
addBasionym() ignores retuns null and addRelationshipToName() throws an exception
~~~java
@Override
public N...
Andreas Kohlbecker
05:26 PM bug #7389 (New): NameTypeDesignationEditor typifiedNamesComboboxSelect always is readonly
this is the same problem as with the TaxonNamePopEditor described in #7386
For the NameTypeDesignationEditor the ...
Andreas Kohlbecker
05:16 PM bug #7386 (Resolved): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a ...
Applied in changeset commit:cdm-vaadin|d914aab45e43cd7c0d24f3bf94f609edefd9cae9. Andreas Kohlbecker

04/27/2018

11:57 PM feature request #6568: Migrate perspectives
what does this mean. Should it be reviewed or is there still some work to do? Andreas Müller
11:15 PM bug #4136 (Closed): authorship part of names not being refreshed in taxon navigator
seems to work as expected Andreas Müller
11:09 PM bug #4048: Changing the name in free text editor does not refresh the taxon navigator view
I keep target version for documentation. Andreas Müller
11:08 PM bug #4048 (Worksforme): Changing the name in free text editor does not refresh the taxon navigato...
This seems to work now, at least after saving, which is the correct behavior IMO.
Please reopen if you think somet...
Andreas Müller
11:03 PM bug #5637 (Closed): Selecting a new name for a taxon does not update the details view
Yes, this was probably fully fixed with #5696 and some related commits. Andreas Müller
10:58 PM bug #5696 (Closed): When selecting a new name for a given taxon the name relationships are not up...
First I still had problems to reproduce the wanted result. However, it looks like this was because I added the new na... Andreas Müller
04:29 PM bug #7386: TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym
The problem is caused by the TaxonNameDTO having the getter `getBasionyms()` but not having the according set method.... Andreas Kohlbecker
04:12 PM bug #7386: TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym
I could reproduce this issue while trying to reproduce the issue #7387.
The Steps I took where:
1. Open existin...
Andreas Kohlbecker
03:28 PM bug #7386: TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym
Sollte dieser Fehler bis Juni 2018 nicht wieder auftauchen ist er eventuell schon beseitigt worden und wir sollten da... Andreas Kohlbecker
03:26 PM bug #7386: TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a basionym
Ich kann das leider nicht reproduzieren Andreas Kohlbecker
03:25 PM bug #7386 (Resolved): TaxonNamePopEditor: com.vaadin.data.Property$ReadOnlyException on saving a ...
Eingabe Basionym (für Alpha gggg), Fehler nach eingabe der Basionymreferenz mit Basionymauthorteam auf der Screenshot... Andreas Kohlbecker
04:11 PM feature request #5783 (Closed): Rename demo instances back to demo I and demo II
Looks fine Andreas Müller
04:03 PM bug #6318 (Feedback): Truncate TextData in FactualData View
Generally this looks fine.
Can we add functionality to remove line breaks(+ carriage return?). Otherwise the trun...
Andreas Müller
03:56 PM bug #6330 (Feedback): Defined sort order for Mediarepresentations
This generally seems to work though I tested only for MediaRepresentations.
Did you check in all cases that you di...
Andreas Müller
03:50 PM bug #7387: TaxonNamePopEditor: ConstraintViolationException on saving a basionym
The violated contrained `UK_l3pp0mset9oltk84pnvytx215` in the stackstace above is the Unique contraint for the TaxonN... Andreas Kohlbecker
03:46 PM bug #7387 (Closed): TaxonNamePopEditor: ConstraintViolationException on saving a basionym

Akzeptierter Name mit Basionym (neu) einer bisher nicht vorhandenen Publikation mit einem bisher nicht vorhandenen ...
Andreas Kohlbecker
03:26 PM bug #6455 (Feedback): Remove not possible for country in field/derived unit details view
remove is still missing in specimen list editor details view Andreas Müller
03:20 PM bug #7381 (Closed): LIE (LazyInitializationException) when saving SpecimenTypeDesignationWorkings...
Prima, der Fehler ist jetzt weg, Danke!!!
Viele Grüße,
Henning
Andreas Kohlbecker
02:18 PM bug #7381: LIE (LazyInitializationException) when saving SpecimenTypeDesignationWorkingsetEditor ...
The problems on saving the SpecimenTypeDesignationWorkingsetEditor should be fixed now. Please review.
Andreas Kohlbecker
02:17 PM bug #7381 (Resolved): LIE (LazyInitializationException) when saving SpecimenTypeDesignationWorkin...
Applied in changeset commit:cdm-vaadin|e9c6f7955fb476ac35c8a5775f41417f3fd48482. Andreas Kohlbecker
02:15 PM bug #7381 (Closed): LIE (LazyInitializationException) when saving SpecimenTypeDesignationWorkings...
Den Fehler hatten wir schon mal.

http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/d1884...
Andreas Kohlbecker
03:19 PM bug #7385: TaxonNameEditor adapt field visibility to rank
Done! please review. Andreas Kohlbecker
03:18 PM bug #7385 (Resolved): TaxonNameEditor adapt field visibility to rank
Applied in changeset commit:cdm-vaadin|b4127a931a738210058db87c28f162f859e4330a. Andreas Kohlbecker
03:18 PM bug #7385 (Closed): TaxonNameEditor adapt field visibility to rank
According to the rank which is selected the 4 fields for name parts should be visible or hidden. Andreas Kohlbecker
03:17 PM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view
this seems to work now Andreas Müller
03:14 PM feature request #7011 (Closed): Migrate group authority editor
this seems to fully work now Andreas Müller
03:10 PM bug #7183 (Feedback): Creating a new reference in bulk editor the focus is not set to the newly c...
This more or less seems to work now though I do not remember how it was before.
The Details view and the supplemen...
Andreas Müller
03:01 PM bug #6526: Show types in correct order
Andreas Müller wrote:
> Yes this is a good idea. I created a related ticket: #7384
>
> Can we anyway switch to th...
Andreas Kohlbecker
02:52 PM bug #6526: Show types in correct order
Yes this is a good idea. I created a related ticket: #7384
Can we anyway switch to the comparator already now as t...
Andreas Müller
02:59 PM feature request #6547 (Closed): Implement excluded and unplaced in taxon navigator
seems to work well now, also for alphabetic order. Andreas Müller
02:51 PM feature request #7382 (Closed): SpecimenTypedesignationsWorkingsetEditor blocks saving as long as...
Andreas Kohlbecker
02:50 PM feature request #7382 (Resolved): SpecimenTypedesignationsWorkingsetEditor blocks saving as long ...
Applied in changeset commit:cdm-vaadin|07a39ef5fdeb096d21d81d86118aeb0aa56f7dec. Andreas Kohlbecker
02:19 PM feature request #7382 (Closed): SpecimenTypedesignationsWorkingsetEditor blocks saving as long as...
Andreas Kohlbecker
02:42 PM feature request #7384 (Closed): Order SpecimenTypeDesignationStatus according to new order in voc...
Due to #6526 the order of type designations status has been slightly changed.
The order should be adapted in existin...
Andreas Müller
02:33 PM feature request #3746: Implement time period scope for description elements in TaxEditor
this should be fixed now. the time period element is now at the end of the description element details view Katja Luther
02:31 PM feature request #3746 (Resolved): Implement time period scope for description elements in TaxEditor
Applied in changeset commit:taxeditor|e8a69e3a3ed9a470ae9f440631eb4cc2bbba4658. Katja Luther
02:29 PM bug #6533 (Closed): New taxon wizard does not refresh is excluded and excluded note information
This seems to be fixed. A related issue is still open: #7383 Andreas Müller
02:27 PM bug #7383 (New): some information missing in taxon node wizard for new taxa
In the taxon node wizard for new taxa the "related persons and teams" are missing. It only shows up when reopening th... Andreas Müller
02:04 PM feature request #6779 (Closed): Allow drag&drop for features in GrantedAuthority editor
Works fine now.
(Only the save button is not disabled after save, but this is another issue)
Andreas Müller
02:01 PM bug #7380 (New): Term editor should use preferences for language selection
Currently if in the preferences another language then English is chosen for term representation still new terms are c... Andreas Müller
01:55 PM bug #6838 (Closed): Implement i18n for FeatureTreeEditor
Seems to work correctly. Andreas Müller
01:42 PM bug #7239 (Closed): Rename last name by family name and first name by "Other/given names"
Works fine now Andreas Müller
11:05 AM bug #7239 (Resolved): Rename last name by family name and first name by "Other/given names"
Katja Luther
01:38 PM bug #7291 (Closed): PolytomousKey Node should not allow to search for synonym
works fine Andreas Müller
12:04 PM bug #7291 (Resolved): PolytomousKey Node should not allow to search for synonym
now also the scope is restricted to taxa Katja Luther
01:35 PM bug #7320 (Feedback): dirty flag is not set when clicking "Erneuere Knoten" in Polytomous Keynode...
This works now and ticket can be closed.
However, there are 2 minor issues related that maybe can be fixed also.
...
Andreas Müller
11:30 AM bug #7320 (Resolved): dirty flag is not set when clicking "Erneuere Knoten" in Polytomous Keynode...
this should be fixed now, please review. Katja Luther
01:29 PM bug #7378 (Feedback): doubtful in misapplied names incorrect
Functionality works now.
However, I would keep the old label "Misappl. Doubtful", as users might not know what is...
Andreas Müller
11:55 AM bug #7378: doubtful in misapplied names incorrect
please review Katja Luther
11:55 AM bug #7378 (Resolved): doubtful in misapplied names incorrect
Applied in changeset commit:taxeditor|4f4297cd5aebff28bcdb703dbbec45d372ff2a86. Katja Luther
10:42 AM bug #7378 (Closed): doubtful in misapplied names incorrect
according to #6390#note-13 the doubtful flag in the misapplied name view should be bound to the TaxonRelationship dou... Andreas Müller
01:18 PM bug #7379 (Feedback): right click menu of accepted taxa should not show "change to"
Issues for 2) are not yet implemented.
Andreas Müller
11:06 AM bug #7379 (Resolved): right click menu of accepted taxa should not show "change to"
please review Katja Luther
10:44 AM bug #7379 (Closed): right click menu of accepted taxa should not show "change to"
im Rechte-Maus Menu des Nameeditors stimmen gerade ein paar Dinge nicht.
1) Taxa: das Change To Menü wird angezeig...
Katja Luther
01:07 PM feature request #7065: When updating a subtree the affected and opened taxa are not updated in na...
Only name editors are updated but not e.g. bulk editors. I tried with set publish flag. Andreas Müller
01:06 PM feature request #7065 (Feedback): When updating a subtree the affected and opened taxa are not up...
Katja Luther wrote:
> instead of updating the editorInput of the name editor, the name editors are closed and reopen...
Andreas Müller
12:37 PM bug #7031 (Closed): Open in referencing objects view must not show "Open in referencing Objects"
Seems to work correctly now. Andreas Müller
12:17 PM bug #7366 (Closed): TeamOrPersonField readonly if users lacks edit permissions
finally fixed! Andreas Kohlbecker
12:01 PM bug #6973: Refreshing details and supplemental view
>Now, after reconnect the details view and supplemental data is emptied but when clicking on the empty details view t... Andreas Müller
11:58 AM bug #6973 (Feedback): Refreshing details and supplemental view
Andreas Müller
11:58 AM bug #6973: Refreshing details and supplemental view
>If one adds a new term and then the label of this term is changed, the new label is not reflected in the label of th... Andreas Müller
11:33 AM feature request #7102 (Feedback): Enable EDIT and DELETE for specimen determinations
Andreas Müller wrote:
> Andreas Müller wrote:
> > Deleting the name should also delete the taxon
>
> This someti...
Andreas Müller
11:22 AM task #7325 (Resolved): Taxeditor uses CdmTransientEntityCacher from cdmlib-cache
commit:taxeditor|e25b303 ( #7212 ) seems to be already in cdmlib. I think we can close this ticket. please review if ... Katja Luther
10:58 AM feature request #7215 (Closed): Implement pro parte misapplied names in TaxEditor
works fine Andreas Müller
10:54 AM bug #6962: Finally remaining issues for misapplied name details view
yes 2 and 3 are already implemented. Katja Luther
10:50 AM bug #6962: Finally remaining issues for misapplied name details view
which of the issues are still open? To me it looks like 2 and 3 is done. Correct? Andreas Müller
10:41 AM bug #5193 (Worksforme): Changing the name of a taxon does not refresh the taxon navigator
In v4.15 this works now, after saving the navigator is up to date.
Katja Luther
10:29 AM bug #7377 (New): AdvancedBeanInitializer.bulkLoadLazyBeans causes autoFlush being triggered
initializing a Team through the AdvancedBeanInitializer causes an autoflush:
In AdvancedBeanInitializer.bulkLoadLa...
Andreas Kohlbecker
10:16 AM bug #7376 (New): doubtful taxa not easy to find
doubtful taxa start with an ? in title cache and therefore are difficult to find e.g. in selection dialogs.
We shoul...
Andreas Müller
08:43 AM bug #7375 (New): AdvancedBeanInitializer misses out inititializing Contact details
When using complex init-strategies the AdvancedBeanInitializer can fail to initialize e.g. Faxnumbers of contact.
...
Andreas Kohlbecker

04/26/2018

12:13 AM bug #7226 (Closed): Name relationship Dialog shows same name
Seems to work Andreas Müller
12:10 AM bug #7230 (Closed): Refresh in name editor does not work if using "reuse taxon" in Misapplied Nam...
Seems to be fixed Andreas Müller
 

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