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From 03/28/2018 to 04/26/2018

04/26/2018

11:48 PM bug #7239 (Feedback): Rename last name by family name and first name by "Other/given names"
>Also move family name up and Other/given names down.
This has not been implemented yet
Andreas Müller
11:46 PM bug #7282 (Closed): Still remaining feature tree editor issues
The above issue is also handled in #6806 and also other open issues are handled in subtickets so I close this one. Andreas Müller
03:21 PM bug #7282 (Feedback): Still remaining feature tree editor issues
After adding a new Feature the dirty flag is not set. Andreas Müller
11:41 PM feature request #6746 (Feedback): Implement DetailsView and show SupplementalDataView for Feature...
As i18n support does not exist yet (and we maybe need model change for it) we should currently only allow title cache... Andreas Müller
11:39 PM task #7374 (Closed): Set titleCache of feature trees to protected as long as i18n support does no...
Andreas Müller
11:24 PM bug #7373 (New): TitleAndNameCacheAutoInitializer needs to be adapted to recent TaxonName model c...
The TitleAndNameCacheAutoInitializer has been adapted in turn of the reactoring for #6368. But the changes applied in... Andreas Kohlbecker
03:41 PM feature request #6806 (Feedback): Add context menu to FeatureTreeEditor
Generally all issues fixed or moved to new ticket.
However, the dirty flag does not seem to work correctly. This n...
Andreas Müller
03:25 PM feature request #7372 (Resolved): Allow configuring feature/term tree
copied from #6806
It looks like multiple usage of 1 feature in the same feature tree is currently not/now supporte...
Andreas Müller
03:14 PM bug #7290 (Closed): Creating the first node in a new polytomous key throws NPE
Seems to be fixed Andreas Müller
03:12 PM bug #7371 (Closed): Deleting Polytomous Key throws NPE
What I did:
1. created new Polytomous Key
1. created 2 PK nodes (second was an alternative)
1. delete key => exc...
Andreas Müller
03:07 PM bug #7295 (Closed): When creating homotypic synonym the accepted taxon and new synonym are not sh...
I am not sure what really happened before but I can't create any gray block anymore by creating a new synonym. So I c... Andreas Müller
02:54 PM feature request #7329 (Closed): Unify naming for both specimen editors (bulk and hierarchy)
Not sure if we should better use "Beleg" instead of "Specimen" in German Version. However, we may wait until users co... Andreas Müller
02:48 PM feature request #7368 (Closed): cdm entities report persistence state
I don't think @Transient is enough on the interface therefore I also added it to CdmBase. Andreas Müller

04/25/2018

02:15 PM task #7369 (In Progress): Handle taxonomically valueless taxa correctly
Andreas Müller
02:15 PM task #7369: Handle taxonomically valueless taxa correctly
first implementation with markers now available Andreas Müller
01:05 PM task #7369 (Resolved): Handle taxonomically valueless taxa correctly
Currently 268 taxa in E+M have an IsExcludedMarker with IsExcludedExtension "not accepted: taxonomically valueless lo... Andreas Müller
02:14 PM task #6517: Stable IDs in Edaphobase at least for example taxa
stable uuid's are now available from edaphobase. Still need to adapt tests (test taxa still have the old uuid as it i... Andreas Müller
01:09 PM bug #7370 (New): [E+M] Handle taxonomically valueless taxa in dataportal
see #7369
The status information for taxonomically valueless taxa needs to be shown at a prominent place on the ta...
Andreas Müller
10:47 AM feature request #7368 (Resolved): cdm entities report persistence state
Done! Andreas Kohlbecker
10:22 AM feature request #7368: cdm entities report persistence state
Andreas Müller wrote:
> I guess we should add @Transient.
Agreed!
> Maybe we should also add a comment that...
Andreas Kohlbecker
10:19 AM feature request #7368: cdm entities report persistence state
Maybe we should also add a comment that it does not necessarily mean that there is a database record already but mayb... Andreas Müller
10:16 AM feature request #7368 (Feedback): cdm entities report persistence state
Generally ok, but I guess we should add @Transient. Andreas Müller
10:04 AM feature request #7368: cdm entities report persistence state
please review Andreas Kohlbecker
10:03 AM feature request #7368 (Resolved): cdm entities report persistence state
Applied in changeset commit:cdmlib|57f91fb2db32a59d0df5bd72faa837219c1a4ad5. Andreas Kohlbecker
09:42 AM feature request #7368 (Closed): cdm entities report persistence state
all cdm entities should have method to report if the object is persisted or not.
~~~java
public boolean isPers...
Andreas Kohlbecker

04/24/2018

02:53 PM bug #7367 (Closed): Deleting a term in the term editor does not update the UI
Walter:
"ich habe bei den User defined features aus Versehen einen „Unterterm“ eingefügt.
Wenn ich im Kontext Men...
Patrick Plitzner
11:49 AM bug #7366 (In Progress): TeamOrPersonField readonly if users lacks edit permissions
Andreas Kohlbecker
09:19 AM bug #7366: TeamOrPersonField readonly if users lacks edit permissions
Wolf-Henning Kusber wrote:
> Andreas Kohlbecker wrote:
> > User without sufficient GrantedAuthorities to edit the t...
Andreas Kohlbecker

04/23/2018

06:19 PM bug #7366: TeamOrPersonField readonly if users lacks edit permissions
Andreas Kohlbecker wrote:
> User without sufficient GrantedAuthorities to edit the team or persons in TeamOrPersonFi...
Wolf-Henning Kusber
06:05 PM bug #7366 (Closed): TeamOrPersonField readonly if users lacks edit permissions
User without sufficient GrantedAuthorities to edit the team or persons in TeamOrPersonField data must be blocked from... Andreas Kohlbecker
05:14 PM task #7365 (Closed): enable CdmPopupEditors to operate on CdmDecoratorDTOs
Andreas Kohlbecker
05:13 PM task #7365 (Resolved): enable CdmPopupEditors to operate on CdmDecoratorDTOs
Andreas Kohlbecker
05:12 PM task #7365 (Closed): enable CdmPopupEditors to operate on CdmDecoratorDTOs
Decorator-DTOs are wrappers (decorator pattern) applied to cdm entities to let the entities appear as DTO. Internally... Andreas Kohlbecker
04:59 PM task #7364: TaxonNameEditor supports editing of a validated name
invalid name need field from EDITor "Nomenclatural Status"
Nomclatural Status Type
Rule Considered
Reference (List...
Wolf-Henning Kusber
04:52 PM task #7364 (Closed): TaxonNameEditor supports editing of a validated name
Implement editing of exactly one name associated to the name in the editor via a relation of type `ValidatedBy`
...
Andreas Kohlbecker
04:55 PM feature request #7363: TaxonNameEditor supports replaced synonyms
Characteristic is the omission of the Author of the replaced synonym (see basionym author). Wolf-Henning Kusber
04:48 PM feature request #7363 (Duplicate): TaxonNameEditor supports replaced synonyms
Implement editing of replaced synonyms in the taxon name editor. Replaced synonyms are the more general case of basio... Andreas Kohlbecker
03:38 PM feature request #7362 (Closed): Implement view for Gfbio terminology service
Patrick Plitzner
01:56 PM bug #6241: fix java doc problems in projects
replaced @date by @since Andreas Müller
11:19 AM bug #7361 (Closed): Consistent UI concept for create, new, add, remove, delete, edit buttons
The UI is currently inconsistent in the representation of the add, edit and create buttons as demonstrated by the scr... Andreas Kohlbecker
10:23 AM bug #6109 (Worksforme): Drag & Drop after creating a new description fails
trying to drag & drop a newly created fact asks for saving, no exception anymore Katja Luther

04/20/2018

10:27 PM bug #7359 (Closed): cdm popuop editors in readonly mode if the user is not permitted to edit
Andreas Kohlbecker
10:26 PM bug #7359 (Resolved): cdm popuop editors in readonly mode if the user is not permitted to edit
Applied in changeset commit:cdm-vaadin|9c239e1b6f406e7fab637657a12e9682c2754646. Andreas Kohlbecker
07:22 PM bug #7359 (Closed): cdm popuop editors in readonly mode if the user is not permitted to edit
1. The AbstractCdmEditorPresenter should evaluate the permissions of the current user after loading the entity bean t... Andreas Kohlbecker
09:27 PM bug #7360 (Closed): users NOT having DELETE are permitted to delete References
solved for ReferenceVoter and for TaxonNameVoter Andreas Kohlbecker
09:17 PM bug #7360 (Resolved): users NOT having DELETE are permitted to delete References
Applied in changeset commit:cdmlib|2d55550d9d00f88e4f3e9e9a235f427914aa733e. Andreas Kohlbecker
09:13 PM bug #7360 (Closed): users NOT having DELETE are permitted to delete References
A user which is not having the GrantedAuthority `REFERENCE.[DELETE]` or an according per entity permission is permitt... Andreas Kohlbecker
03:43 PM bug #7358 (Closed): Show warning when browser history back is used while popup editors are open
Utilizing the browser history back function can lead to a lot of confusing when the popup windows are open at the sam... Andreas Kohlbecker
12:58 PM bug #7357 (New): Clone methods correctly implemented for bidirectional relationships
Many clone methods do not take into account that links to single objects or collection items require handling of bidi... Andreas Müller

04/19/2018

06:44 PM task #7356 (In Progress): setup selenium test suite for cdm-vaadin
Andreas Kohlbecker
06:23 PM task #7356 (In Progress): setup selenium test suite for cdm-vaadin
The primary option to setup a test suite for testing the cdm-vaadin UIs is to use the **Vaadin Test Bench**. Even if ... Andreas Kohlbecker
02:41 PM task #7355 (Resolved): TaxonNamePopupEditor: newly created nomenclatural reference should be sele...
Applied in changeset commit:cdm-vaadin|ec3938a6cf135cb6f01617c6a6c014192086ff88. Andreas Kohlbecker
02:37 PM task #7355 (Closed): TaxonNamePopupEditor: newly created nomenclatural reference should be select...
The TaxonNamePopupEditor allows to create new nomenclatural references via the nomenclatural reference field.
After ...
Andreas Kohlbecker
02:21 PM bug #7354 (Resolved): DerivedUnitConverter handles associated SpecimenTypeDesignation correctly
Applied in changeset commit:cdmlib|940e93a138cb1003aa0366647204aee36758cba5. Andreas Kohlbecker
02:07 PM bug #7354 (Closed): DerivedUnitConverter handles associated SpecimenTypeDesignation correctly
DerivedUnitConverter completely ignores the fact that a DerivedUnit can be associated with multiple or none SpecimenT... Andreas Kohlbecker
02:20 PM bug #7353 (Resolved): SpecimenTypedesignationsWorkingsetEditor: error on saving after changing ki...
Applied in changeset commit:cdm-vaadin|3baf176789a2471e9174a095357ed78cb690c3d5. Andreas Kohlbecker
02:02 PM bug #7353 (Closed): SpecimenTypedesignationsWorkingsetEditor: error on saving after changing kind...
Changing the kindOfUnit from can cause the situation in which an already existing DerivedUnit is to be persistet twic... Andreas Kohlbecker

04/18/2018

03:14 PM bug #7352 (Closed): review propertyPaths in editor
the propertyPaths in editor are not updated for all model changes therefore the objects are not correctly loaded and ... Katja Luther
10:45 AM bug #7351 (Worksforme): LIE (LazyInitializationException) when opening SpecimenTypeDesignationWor...

http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/55acea03-f39a-4ee1-aa47-a7c8b272712c
...
Andreas Kohlbecker

04/16/2018

05:04 PM bug #7350: Collection date is not being saved
done! Please review. Andreas Kohlbecker
05:03 PM bug #7350 (Resolved): Collection date is not being saved
Applied in changeset commit:cdm-vaadin|3b4bcfb52e1aa9f8f673d85ff1aee25aa81cc3cb. Andreas Kohlbecker
04:39 PM bug #7350 (Closed): Collection date is not being saved

Specimen typedesignations editor

Collection date, in das Feld Start „2018-01-01“ eingegeben, gespeichert, R...
Andreas Kohlbecker

04/13/2018

06:29 PM bug #7349 (Closed): RegistrationPopupEditor fails saving new References with new Team with 2 new ...
Andreas Kohlbecker
06:29 PM bug #7349: RegistrationPopupEditor fails saving new References with new Team with 2 new memers
This was a quite strange bug.
As long as the new person objects where set as value to the lazy select the contact ...
Andreas Kohlbecker
06:25 PM bug #7349 (In Progress): RegistrationPopupEditor fails saving new References with new Team with 2...
Andreas Kohlbecker
06:25 PM bug #7349 (Closed): RegistrationPopupEditor fails saving new References with new Team with 2 new ...

habe den Eindruck, dass es wieder an dem neuen Team von 2 neuen Autoren liegt.
![](picture810-1.png)
~~~
...
Andreas Kohlbecker
02:02 PM task #6753: Edaphobase data issues before import
Synonym relationships with deleted taxa
~~~ sql
SELECT
sr.tax_synonym_id, sr.deleted, a.taxon_id, a.valid, a....
Andreas Müller

04/11/2018

03:18 PM feature request #7348 (Closed): RegistrationDTO webservices implemented

The webservices exposing `RegistrationsDTO`s must not expose `Registration`s to unauthenticated users which are not...
Andreas Kohlbecker
07:50 AM task #7269: Use redmine as message hub for submitter curator communication
Applied in changeset commit:taxeditor|2ccbcf35e9e8b9cdd92c8c289cfe7f715ca047c7. Patrick Plitzner

04/10/2018

01:56 PM bug #7101 (In Progress): StatusPresenterTest broken
Fabian Reimeier
08:44 AM task #7347 (New): Generic test suite to monitor multiple dataportals
This test suite will generically test common functionality on multiple dataportal installations
* Base the test ...
Andreas Kohlbecker

04/09/2018

11:34 AM bug #7344 (Resolved): TaxonNamesEditor to fill authorship fields automatically if nomref and basi...
Henning, this issue should be fully solved now, and you are welcome to review this ticket. Andreas Kohlbecker

04/06/2018

11:36 PM bug #3804 (Resolved): E+M import Person titles contain Object.toSting() representations
Seems to be fixed. Only remaining AgentBase with title Person#ID<UUID> is now BM AuthorID 3330, which really has no d... Andreas Müller
05:25 PM task #7341 (In Progress): [Check] CommonName import issues
Andreas Müller
05:24 PM task #7346 (Resolved): [CHECK] Use separate area vocabulary for common names
Currently we try to map common name areas to tdwg and country vocabularies.
Experience has shown that it is better t...
Andreas Müller
05:05 PM bug #7344 (In Progress): TaxonNamesEditor to fill authorship fields automatically if nomref and b...
Andreas Kohlbecker
12:12 PM task #7039: Remove Hacks for RL 2017 from Distribution Editor
I made some preparations for removing the hacks and retrieving the uneditable areas from preferences.
@Andreas Mülle...
Fabian Reimeier
12:01 PM task #7039 (In Progress): Remove Hacks for RL 2017 from Distribution Editor
Fabian Reimeier

04/05/2018

07:01 PM feature request #7345 (Feedback): [E+M] Common name references selectable in TaxEditor
In Euro+Med Berlin Model references for common names are handled separately from other references but do link to them... Andreas Müller
04:48 PM bug #7344 (Closed): TaxonNamesEditor to fill authorship fields automatically if nomref and basion...
We misunderstood how the authorship fields in the TaxonName are used by the cdm library. In contrast to the current i... Andreas Kohlbecker
04:28 PM task #7343: PersonField allows editing the nomenclaturalTitle
please review Andreas Kohlbecker
04:27 PM task #7343 (Resolved): PersonField allows editing the nomenclaturalTitle
Applied in changeset commit:cdm-vaadin|adad0cac1264f1e303f63a453933e1488c773457. Andreas Kohlbecker
04:24 PM task #7343 (Closed): PersonField allows editing the nomenclaturalTitle
add a TextField for the `Person.nomenclaturalTitle` to the `PersonField` and keep the UI compact at the same time Andreas Kohlbecker
11:46 AM bug #7342: incomplete bean initialization with specific data causes LIEs
ich habe den cdm-server heute morgen um 2018-04-05 08:51:14 neu gestartet, weil der swap-space wieder mal sehr stark... Andreas Kohlbecker
10:51 AM feature request #7244: DistributionStatus editor help
Added help-window for the distribution editor.
@Andreas Müller Please review if the documentation is sufficient.
Fabian Reimeier
10:51 AM bug #7241 (Closed): Missing rights are not correctly indicated in Vaadin distribution editor - fl...
Andreas Kohlbecker
10:42 AM bug #7241: Missing rights are not correctly indicated in Vaadin distribution editor - flexible va...
Andreas Kohlbecker wrote:
> I modified the DelegatingErrorHandler and ErrorTypeHandler a bit in order to allow using...
Fabian Reimeier

04/04/2018

05:23 PM task #7341: [Check] CommonName import issues
Find commonNames or facts attached to orphaned taxa:
~~~sql
SELECT n.fullNameCache, pt.PTNameFk, pt.PTRefFk, coun...
Andreas Müller
02:32 PM bug #7342: incomplete bean initialization with specific data causes LIEs
for example portal/classification/b010c84d-6049-45f4-9f13-c065101eaa26/childNodesOf/a7d542c5-1ae2-4edd-9f46-445b9b7f6... Katja Luther
02:23 PM bug #7342 (New): incomplete bean initialization with specific data causes LIEs
this has been observed at the salvador portal where a lot of functionality is broken due to `LazyInitializationExcept... Katja Luther
08:40 AM feature request #6812: Improve TaxEditor download site
[a.mueller:]
... Ich wollte nur darauf hinweisen, dass das mit dem automatischen Verschieben noch nicht klappt ...
Andreas Kohlbecker

04/03/2018

12:36 PM task #7341 (Resolved): [Check] CommonName import issues
Run script to create common names from facts: #6938
There are some issues with common name import for E+M:
* C...
Andreas Müller

03/29/2018

01:39 PM bug #7340 (Closed): OderedVocabularies are initialised with DefinedTerms
In Campanula production I tried adding a new term for all term vocabularies.
This fails for OrderTermVocabularies be...
Patrick Plitzner
10:58 AM task #7339 (Closed): activate clickable links for references in Phycobank Dataportal
Projektanforderung: Anzeigemöglichkeit der kompletten Referenz auch bei Namensregistrierungen.
**Lösung:** Referen...
Andreas Kohlbecker

03/28/2018

05:20 PM bug #7337 (Closed): creating of new NameTypeDesignation for empty registration ends up without ty...
Andreas Kohlbecker
04:28 PM bug #7337: creating of new NameTypeDesignation for empty registration ends up without typified name
If this solves the problem without producing duplicates, fine. Wolf-Henning Kusber
04:23 PM bug #7337: creating of new NameTypeDesignation for empty registration ends up without typified name
please review Andreas Kohlbecker
04:23 PM bug #7337 (Resolved): creating of new NameTypeDesignation for empty registration ends up without ...
Applied in changeset commit:cdm-vaadin|2108e10fcf43997a6d4952455c25948e3247f265. Andreas Kohlbecker
04:00 PM bug #7337 (Closed): creating of new NameTypeDesignation for empty registration ends up without ty...
The typifiedName is retrieved either from existing nameTypeDesignations or the Registration.name is being used instea... Andreas Kohlbecker
04:29 PM task #7338 (Closed): Validate taxon name against the higher taxon name
Beim Namens-Editor für Arten oder infraspezifische Taxa ist das nächst-höhere Taxon meist schon im System. Einfachste... Andreas Kohlbecker
02:43 PM feature request #7334 (In Progress): Make pro parte and partial synonyms real concept relationships
Andreas Müller
02:19 PM feature request #7334 (Resolved): Make pro parte and partial synonyms real concept relationships
Since #5974 pro parte and partial is stored as attribute of a synonym which belongs to exactly 1 accepted taxon.
P...
Andreas Müller
02:38 PM bug #7314 (Closed): support for dot and comma in Georeferenz, Error radius, Altitude, Distance to...
thank you for reviewing. I will close this issue Andreas Kohlbecker
11:23 AM bug #7314: support for dot and comma in Georeferenz, Error radius, Altitude, Distance to ...
dot=komma and allowed in all fields except of elevation? Happy! Wolf-Henning Kusber
11:17 AM bug #7314: support for dot and comma in Georeferenz, Error radius, Altitude, Distance to ...
Hi Henning,
please review if you are happy with the solution.
Andreas
Andreas Kohlbecker
11:16 AM bug #7314 (Resolved): support for dot and comma in Georeferenz, Error radius, Altitude, Distance ...
Applied in changeset commit:cdm-vaadin|ee699257f7f2fb3748c260308279706df2140c21. Andreas Kohlbecker
02:32 PM feature request #7336 (Closed): Implement partial misapplied names in TaxEditor
same as #7215 but for partial, not pro parte misapplied names. Andreas Müller
02:23 PM feature request #7335 (Closed): Allow editing of pro parte and partial synonyms in the same way a...
With #7334 pro parte and partial synonyms will be editable only as concept relationships. Therefore they must be hand... Andreas Müller
10:34 AM bug #7230: Refresh in name editor does not work if using "reuse taxon" in Misapplied Name View (e4)
Katja Luther wrote:
> now the details view and name editor are updated, but there is still a bug in showing the taxo...
Katja Luther
09:25 AM feature request #7082 (Closed): Implement integration test for the SpecimenTypeDesignationWorkin...
completed and released in version 4.13 Andreas Kohlbecker
09:06 AM bug #7333: LIE when creating registration for existing name
hi Henning,
I solved the problem, please also test yourself to verify the fix.
Andreas
Andreas Kohlbecker
09:05 AM bug #7333 (Resolved): LIE when creating registration for existing name
Applied in changeset commit:cdm-vaadin|cb426588993d36f28edff82d87254828e9e41e86. Andreas Kohlbecker
 

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