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From 01/23/2018 to 02/21/2018

02/21/2018

06:33 PM bug #7287: Unit tests using the DefaultTermInitializer break subsequent integration tests in the ...
affected test class files (without cdmlib-model, model has no integration tests!):
~~~
cdmlib-ext/src/test/java/e...
Andreas Kohlbecker
06:21 PM bug #7287 (Closed): Unit tests using the DefaultTermInitializer break subsequent integration test...

Here we make the distinction between Unit and integration test by the fact that integration tests are sub classing ...
Andreas Kohlbecker
06:22 PM task #7288 (New): Separate Unit and integration tests completely,
only unit test should be run by maven surefire, whereas integration test are to be run by the maven failsafe plugin.
...
Andreas Kohlbecker
06:07 PM bug #5095: URGENT : Fix failing dozer related tests
the tests in
~~~
cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/assembler/lsid/AssemblerTest.java
cdmli...
Andreas Kohlbecker
06:06 PM task #7286 (Duplicate): re-enable dozer related tests
#5095 is still open, so this is a duplicate then Andreas Kohlbecker
06:03 PM task #7286 (Duplicate): re-enable dozer related tests
in order to solve #5095 the tests in
cdmlib-remote/src/test/java/eu/etaxonomy/cdm/remote/dto/assembler/lsid/Assemb...
Andreas Kohlbecker
04:35 PM feature request #7285 (Closed): Edaphobase import: implement ranks Cohort, Hyporder
For Hyporder see http://www.miketaylor.org.uk/dino/faq/s-class/levels/
Problem with cohort is that the exact posit...
Andreas Müller
04:22 PM bug #7079 (Resolved): P2 updates not found
By clearing the update site with every build (#7279) This issue seems to be solved. Patrick Plitzner
04:21 PM bug #7284 (Resolved): Multiple taxeditor jars created in p2 update for a single jenkins build
Removing -P uploadRepo -Dupdate.dir=nightly from the taxeditor-JRE-INTEGRATION solved this issue. Now there is only o... Patrick Plitzner
03:58 PM bug #7284 (Resolved): Multiple taxeditor jars created in p2 update for a single jenkins build
For one execution of taxeditor-INTEGRATION there are three versions of every taxeditor jar on the update site. They a... Patrick Plitzner
03:53 PM bug #7279 (Resolved): p2 sites are extremely huge
There are multiple files but this seems to be another issue. As they are all from the current built updates should wo... Patrick Plitzner
02:45 PM bug #7279 (In Progress): p2 sites are extremely huge
There are still editor jars with multiple versions accumulating in update site:
eg:
https://cybertaxonomy.eu/down...
Andreas Kohlbecker
02:41 PM bug #7279 (Resolved): p2 sites are extremely huge
The update site is now deleted by using the `sshexec` feature of the maven wagon plugin. The goal is part of the `upl... Patrick Plitzner
11:20 AM bug #7279 (In Progress): p2 sites are extremely huge
Andreas Müller
02:40 PM bug #7239 (Resolved): Rename last name by family name and first name by "Other/given names"
Applied in changeset commit:taxeditor|d18c9390acd16d486fad48b90d7dda279f93d2f1. Katja Luther
02:18 PM task #2055 (Rejected): Improve Article creation for nomenclatural references
Some parts are implemented, some do not make sense anymore. Therefore rejected (worksforme). Andreas Müller
02:17 PM feature request #3533 (Resolved): Prefill nomenclatural reference information if possible
Katja Luther
02:07 PM feature request #3983 (Duplicate): [DISCUSS] Easier reference selection - Euro+Med sourceID
Katja Luther
02:05 PM feature request #3983 (Resolved): [DISCUSS] Easier reference selection - Euro+Med sourceID
Katja Luther
01:27 PM feature request #3983 (Closed): [DISCUSS] Easier reference selection - Euro+Med sourceID
Katja Luther
02:05 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
Solutions are clear. Tickets need to be created or linked. Andreas Müller
01:29 PM feature request #5687: search for alternative identifiers
check, what to copy to #7283 Andreas Müller
01:28 PM feature request #5687 (Resolved): search for alternative identifiers
Andreas Müller
01:28 PM feature request #5687 (Closed): search for alternative identifiers
Katja Luther
01:27 PM feature request #5687 (Resolved): search for alternative identifiers
Katja Luther
01:28 PM feature request #7283 (Resolved): Improvements for alternative identifier search
Make configurable via preferences.
* Allow filtering by certain identifier types #7841
* ~~In search result the a...
Andreas Müller
12:06 PM feature request #6305: [MASTER] Improve EDITOR import/export UI configuration panel for all impor...
Please create subtickets for all imports/exports. Change target version to "Reviewed next ...." afterwards. Andreas Müller
11:42 AM bug #6786 (Closed): Remaining feature tree editor issues
copied open issues to new ticket Andreas Müller
11:41 AM bug #7282 (Closed): Still remaining feature tree editor issues
* ~~Use right click menu for all commands. This is the standard for all editors we have, including tree editors like ... Andreas Müller
11:37 AM bug #7003 (Worksforme): endless loop with IllegalArgumentException when no active conversation is...
Reopen if necessary Andreas Müller
11:22 AM bug #7013 (Resolved): NonUniqueObjectException for setSecundumReferenceForSubtree
this should be resolved with reload of the reference Katja Luther
10:49 AM feature request #7281 (Closed): Implement bromelian import
Katja Luther

02/20/2018

07:00 PM task #7269 (Resolved): Use redmine as message hub for submitter curator communication
Applied in changeset commit:cdmlib|83d34a190ce9e9decc40866dea9c2a7b5cdf9fe8. Andreas Kohlbecker
01:21 PM feature request #7076: Add Nebula CompositeTable as direct dependency
For review try opening the GrantedAuthority editor. It is the only widget that uses this dependency Patrick Plitzner
12:11 PM bug #7079: P2 updates not found
something extremely interesting happened:
After deleting and recreating the `taxeditor/update/nightly` folder the ...
Andreas Kohlbecker
11:33 AM bug #7079: P2 updates not found
test:
1 . deleted exiting `./p2/org.eclipse.equinox.p2.repository/cache/-622154754` file which had the md5 sum: `0...
Andreas Kohlbecker
11:23 AM bug #7079: P2 updates not found
supplying some more details to the issue description ... Andreas Kohlbecker
11:58 AM bug #7279 (Closed): p2 sites are extremely huge
Sizes as seen currently:
* 22G nightly
* 9.7G stable
These folders seem to contain more files than need...
Andreas Kohlbecker

02/19/2018

05:47 PM bug #7277 (Closed): Add micrometer to MeasurmentUnit
works fine Patrick Plitzner
04:07 PM bug #7277: Add micrometer to MeasurmentUnit
please review Andreas Müller
04:05 PM bug #7277 (Resolved): Add micrometer to MeasurmentUnit
Applied in changeset commit:cdmlib|0b89a342d89273b0039d2feed87daa7b20b0dd20. Andreas Müller
04:04 PM bug #7277 (Closed): Add micrometer to MeasurmentUnit
Andreas Müller
04:19 PM bug #7278 (New): Import in Authors correctly in Edaphobase
Andreas Müller
03:28 PM feature request #7268: Re-implement own preference dialog
Copied from #7007:
Katja Luther wrote:
> Opening the preferences now throws an NPE:
>
>
> ~~~ text
> java.l...
Patrick Plitzner
02:32 PM feature request #6547: Implement excluded and unplaced in taxon navigator
now there is the excluded/update check in TaxonNodeByNameComparator, so the sorting works for the alphabetic order, t... Katja Luther
02:17 PM feature request #6547 (Resolved): Implement excluded and unplaced in taxon navigator
Applied in changeset commit:cdmlib|65107bf34868fc063c4397f965cf646cdfbe0cb0. Katja Luther
01:39 PM feature request #6547 (Feedback): Implement excluded and unplaced in taxon navigator
Reopen as sorting does not yet work with "alphabetic" sort order, only with "rank + alphabet". Andreas Müller
12:46 PM bug #6679 (Closed): search for misapplied names in portal does not work
Andreas Kohlbecker
12:30 PM bug #6679: search for misapplied names in portal does not work
This can be closed I think. Andreas Müller
12:25 PM feature request #7007: Migrate IMemento functionality
Opening the preferences now throws an NPE:
~~~ text
java.lang.Exception: login : admin
editor version : 4.15.0...
Katja Luther
12:14 PM bug #7230 (In Progress): Refresh in name editor does not work if using "reuse taxon" in Misapplie...
now the details view and name editor are updated, but there is still a bug in showing the taxonrelationship after the... Katja Luther
12:07 PM task #7023 (In Progress): Replace the vaadin-table of the distribution editor by vaadin-grid
Fabian Reimeier
11:59 AM feature request #7276: Make User.email a unique field.
This only makes sense if email is an obligatory field, which currently is not the case and probably also will not be ... Andreas Müller
10:22 AM feature request #7276 (Feedback): Make User.email a unique field.
Make User.email a unique field.
In the context of password recovery it seems also a requirement to make the email ...
Andreas Müller
11:55 AM bug #6804 (In Progress): Order areas in Distribution Selection Editor
Fabian Reimeier
11:24 AM feature request #7275: [DISCUSS] Require email address for Users
Andreas Müller wrote:
> As password recovery is not necessarily a feature needed for all CDM instances the necessity...
Andreas Kohlbecker
10:05 AM feature request #7275: [DISCUSS] Require email address for Users
As password recovery is not necessarily a feature needed for all CDM instances the necessity of obligatory email need... Andreas Müller
11:16 AM feature request #7215 (Resolved): Implement pro parte misapplied names in TaxEditor
Katja Luther

02/17/2018

08:36 AM bug #6679 (Feedback): search for misapplied names in portal does not work
Medicago blancheana subsp. bonarotiana is still not found in Flora of Greece (see ticket description) Andreas Müller

02/16/2018

04:46 PM task #6158: Update EDIT documentation from svn to git
moving to current milestone as I am already working on it Patrick Plitzner
04:23 PM feature request #7275 (Feedback): [DISCUSS] Require email address for Users
Providing a valid email address in user entities should be required.
Without email address password recovery is no...
Andreas Kohlbecker
02:56 PM feature request #7215: Implement pro parte misapplied names in TaxEditor
please have a look, if this looks like it should. Katja Luther
02:13 PM feature request #7215 (In Progress): Implement pro parte misapplied names in TaxEditor
Katja Luther
02:13 PM feature request #7235 (In Progress): Make available area vocabularies a database preference for T...
Katja Luther
02:07 PM feature request #7063: Improve the area selection wizard for distribution editor
the grayed check boxes for larger hierarchies needs to be improved Katja Luther
02:06 PM feature request #7010: Adapt handlers for multiple selection in e4 views
the multiple selection in bulk editor still has to be improved Katja Luther
02:05 PM bug #5823: Fehler beim parallel Editieren von Referenzen
after playing around with a name opened in name editor and bulk editor I still could reproduce the exception Katja Luther
01:58 PM bug #7249 (Resolved): NameTypeDesignationEditor delete not working
please review Katja Luther
01:58 PM bug #7249 (In Progress): NameTypeDesignationEditor delete not working
deleteTypedesignation(uuid, uuid) needs to be called so the name is loaded in the transaction of the method and is sa... Katja Luther
01:56 PM bug #7249 (Resolved): NameTypeDesignationEditor delete not working
Applied in changeset commit:cdmlib|a4ea650264157dff61c6e4e351f9d1bf6aa79bb7. Katja Luther
01:43 PM bug #7249 (In Progress): NameTypeDesignationEditor delete not working
now there is a exception when opening the taxon or name after deleting the type designation:
~~~
!ENTRY org.eclip...
Katja Luther
01:29 PM bug #7249 (Resolved): NameTypeDesignationEditor delete not working
please review Katja Luther
01:28 PM bug #7249 (Feedback): NameTypeDesignationEditor delete not working
this should work now. in tax editor it works as expected. Katja Luther
01:28 PM bug #7249 (Resolved): NameTypeDesignationEditor delete not working
Applied in changeset commit:cdmlib|85b0276d8821c39d875efac1fa62c8375fe10dd2. Katja Luther
01:39 PM bug #6751 (Worksforme): After shutdown error message in log file
I can not reproduce anymore Katja Luther
01:17 PM feature request #7190: TaxonNodeFilter should support aggregated area filter
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Copied from #7166: I tested a scenario which actually the oppos...
Patrick Plitzner
12:56 PM feature request #7190: TaxonNodeFilter should support aggregated area filter
Patrick Plitzner wrote:
> Copied from #7166: I tested a scenario which actually the opposite of aggregation: the gen...
Andreas Müller
12:48 PM feature request #7190: TaxonNodeFilter should support aggregated area filter
Copied from #7166: I tested a scenario which actually the opposite of aggregation: the genus had a distribution which... Patrick Plitzner
01:02 PM feature request #7262: add progress monitor to csv print export and cdm light export
please review Katja Luther
01:01 PM task #7201 (Closed): [DISCUSS] Should we remove created comparison from CdmBase.equals?
seems logically correct and as long as I see everything works Katja Luther
12:53 PM feature request #7148 (Closed): GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan r...
remaining task copied to new issue Andreas Kohlbecker
12:44 PM feature request #7148 (Feedback): GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan...
do you want to add the exception handling for failing flush or commit? Katja Luther
12:52 PM task #7274 (Closed): GrantedAuthorityRevokingRegistrationUpdateLister: add the exception handling...
copied from #7148:
"*Es fehlt eventuell in meinem Code noch die Fehlerbehandlung für den Fall dass das der flush o...
Andreas Kohlbecker
12:52 PM bug #6786: Remaining feature tree editor issues
moving to current milestone Patrick Plitzner
12:52 PM feature request #6779: Allow drag&drop for features in GrantedAuthority editor
moving to current milestone Patrick Plitzner
12:52 PM feature request #6931: Migrate uses view
moving to current milestone Patrick Plitzner
12:52 PM feature request #6909: Migrate taxon navigator
moving to current milestone Patrick Plitzner
12:52 PM feature request #6598: Migrate commands and handlers
moving to current milestone Patrick Plitzner
12:51 PM bug #7031: Open in referencing objects view must not show "Open in referencing Objects"
moving to current milestone Patrick Plitzner
12:50 PM feature request #7102: Enable EDIT and DELETE for specimen determinations
move this *forgotten* issue to current milestone Patrick Plitzner
12:47 PM feature request #7166 (Closed): Implement area filter for TaxonNodeFilter
Everything works as expected. I tested a scenario which actually the opposite of aggregation: the genus had a distrib... Patrick Plitzner
12:44 PM feature request #7165 (Closed): Extend TaxonNodeFilter with rank filtering
this works fine Patrick Plitzner
12:25 PM bug #7111 (Closed): synchronize button does not work as expected
constant is replaced Katja Luther
12:04 PM bug #7111 (Feedback): synchronize button does not work as expected
Looks good. But can you replace the part id in `findPart("eu.etaxonomy.taxeditor.navigation.navigator");` with the co... Patrick Plitzner
11:19 AM bug #7111: synchronize button does not work as expected
please review Katja Luther
12:20 PM feature request #7008 (Closed): Migrate export wizards
everything is fine. Katja Luther
12:12 PM feature request #7008: Migrate export wizards
Katja Luther wrote:
> the jaxb export wizard and sdd export wizard has the next button activated, but there is no ad...
Patrick Plitzner
12:14 PM bug #7112: Ask for saving dirty editors when closing Taxeditor
No work has been done so far. Moved to next milestone. Patrick Plitzner
12:09 PM feature request #6800: Allow all filters for DwCA export in TaxEditor
the subtree filter should be available now, please review. To filter on taxa, you have to click on taxonnodes without... Katja Luther
12:03 PM bug #7273 (New): Expanding DeleteTaxonNode wizard shows some parts of the buttons in old position
when expanding the deleteTaxonnode wizard for configuring the delete, there are some parts of the buttons visible at ... Katja Luther
12:00 PM bug #7069 (Closed): Delete taxon node should have consistent configuration
now the nodes are only deleted if delete is clicked.
the problem of the remaining button parts when expanding the wi...
Katja Luther
11:17 AM feature request #7158: Add pro parte misapplied name to the concept relationship types
the search especially of the standard search looks correct.
@AK please review the lucene search
Katja Luther
10:55 AM bug #7183: Creating a new reference in bulk editor the focus is not set to the newly created entity
please review Katja Luther
10:47 AM feature request #7001 (Feedback): Show date and/or version-number on taxeditor download site
Fabian Reimeier
09:48 AM bug #6533 (Resolved): New taxon wizard does not refresh is excluded and excluded note information
Applied in changeset commit:taxeditor|85367589e0f13bf26eace625c78183075f5d05c8. Katja Luther
08:51 AM feature request #7268 (In Progress): Re-implement own preference dialog
Patrick Plitzner
08:44 AM bug #7079: P2 updates not found
ich habe den **redirect auf https wieder aktiviert** Andreas Kohlbecker

02/15/2018

05:49 PM bug #7079: P2 updates not found
nach dem "reload" wie in #5061 empfohlen wird wesentlich mehr von der Update site herunter geladen:
![](wireshark-...
Andreas Kohlbecker
05:41 PM bug #7079: P2 updates not found
ich habe den **redirect auf https wieder deaktiviert**, so dass die updates für nightly wieder funktionieren müssen. ... Andreas Kohlbecker
02:56 PM feature request #7262 (Resolved): add progress monitor to csv print export and cdm light export
I think this was fixed already therefore I set to resolved Andreas Müller
02:53 PM bug #7209: use git repos instead of svn in all pom.xml
the scm entries in the sub-modules are not needed as the source repository page of the doc site is only showing the e... Andreas Kohlbecker
02:42 PM bug #6786: Remaining feature tree editor issues
strange, I can't reproduce anymore, so these issues seem to be solved. Should we move remaining issues into a new tic... Andreas Müller
12:14 PM bug #6786 (Feedback): Remaining feature tree editor issues
When selecting a feature the table is not refreshed afterwards.
Also I got a NonUniqueObjectException when trying ...
Andreas Müller
11:11 AM bug #6786 (Resolved): Remaining feature tree editor issues
Andreas Müller
02:14 PM feature request #6909: Migrate taxon navigator
Creating a new classification works now. Also no exception is thrown anymore.
But in a completely empty database (...
Andreas Müller
01:31 PM bug #6679: search for misapplied names in portal does not work
Hallo Ralf,
bitte prüfe ob die Suchergebnisse nun korrekt sind.
Andreas
Andreas Kohlbecker
01:25 PM bug #6679 (Resolved): search for misapplied names in portal does not work
Applied in changeset commit:cdm-dataportal|eebf415b5ddb507dad7de6c82d970187059b6618. Andreas Kohlbecker
10:55 AM bug #6679: search for misapplied names in portal does not work
Another test case:
Hallo Andreas,

gab es in letzter Zeit Probleme mit den Misapplikationen? Ich habe eben R...
Andreas Kohlbecker
01:30 PM bug #7237 (Closed): Status are not deletable in TaxEditor distribution status
Andreas Müller
09:05 AM bug #7237: Status are not deletable in TaxEditor distribution status
now it should work Katja Luther
01:28 PM bug #7272 (New): implement test for misapplied names in search results

implement test to prevent from regressions of #6679
Andreas Kohlbecker
01:16 PM bug #7030 (Closed): Opening referenced object of type designation throws NPE
Seems to be fixed. Andreas Müller
12:30 PM feature request #6547 (Closed): Implement excluded and unplaced in taxon navigator
remaining issue (icons) moved to new ticket Andreas Müller
09:04 AM feature request #6547 (Resolved): Implement excluded and unplaced in taxon navigator
update is solved by using the event bus Katja Luther
12:26 PM task #7271 (New): Find better symbols for unplaced and excluded
Andreas Müller
11:41 AM feature request #6779 (Feedback): Allow drag&drop for features in GrantedAuthority editor
D&D works now. Only open issue: the label is not shown in the "Entity" field, but only the uuid. Andreas Müller
11:05 AM feature request #6779 (Resolved): Allow drag&drop for features in GrantedAuthority editor
I added FEATURE to CdmPermissionClass. Will test if it works when built in jenkins. Andreas Müller
10:27 AM feature request #7270 (Rejected): Registration message controller implemented

Service endpoint: `/registration/{local_identifier}/messages`
Messages related to a registration are not manag...
Andreas Kohlbecker
09:23 AM task #7269 (In Progress): Use redmine as message hub for submitter curator communication
Andreas Kohlbecker
09:14 AM bug #7252 (Closed): createdby_id often is null
Andreas Kohlbecker
09:13 AM bug #7252 (Resolved): createdby_id often is null
Applied in changeset commit:cdmlib|d199517b4b86e38386578de341491f62819ea651. Andreas Kohlbecker

02/14/2018

04:09 PM feature request #7132 (Closed): allow opening editors for name and typedesignations in readonly m...
Andreas Kohlbecker
04:07 PM bug #7077 (Closed): INameService.deleteTypeDesignation(TaxonName name, TypeDesignationBase typeDe...
The tests now runs successful even without the 'hack' Andreas Kohlbecker
03:51 PM bug #7160 (Closed): DwC-A meta.xml file has wrong file extension
Andreas Kohlbecker
03:50 PM bug #7103 (Closed): verify, fix, improve SpecimenTypeDesignationWorkingSetServiceImpl delete func...
Andreas Kohlbecker
03:49 PM bug #7030 (Resolved): Opening referenced object of type designation throws NPE
Patrick Plitzner
02:03 PM bug #7030 (Feedback): Opening referenced object of type designation throws NPE
I still get an NPE but at a different position:
~~~
login : admin
editor version : 4.14.0.201802132349
server :...
Andreas Müller
03:27 PM feature request #6779: Allow drag&drop for features in GrantedAuthority editor
This is probably related to the fact that Feature is not yet part of the CdmPermissionClass Andreas Müller
03:26 PM bug #7250 (Closed): add null checks to TeamDefaultCacheStrategy
looks ok Andreas Müller
02:51 PM bug #6786: Remaining feature tree editor issues
Add new feature to an new empty feature tree throws a CCE:
~~~
login : admin
editor version : 4.14.0.20180214124...
Andreas Müller
02:35 PM feature request #6547 (Feedback): Implement excluded and unplaced in taxon navigator
Andreas Müller
02:29 PM feature request #6547: Implement excluded and unplaced in taxon navigator
Generally works. Only we may want to automatically refresh the navigator tree and labels after closing the taxon node... Andreas Müller
01:35 PM feature request #6547 (Resolved): Implement excluded and unplaced in taxon navigator
the unplaced are marked by a turned question mark and the excluded taxa by a slashed o.
Maybe we have to open a new ...
Katja Luther
02:28 PM bug #6984 (Closed): withHeader is not yet working in DwC-A export
works now! Andreas Kohlbecker
01:53 PM bug #7031 (Feedback): Open in referencing objects view must not show "Open in referencing Objects"
It is now disabled but not completely invisible as most most of the other entries in other contexts.
Can't we just...
Andreas Müller
01:50 PM bug #7237 (Resolved): Status are not deletable in TaxEditor distribution status
Applied in changeset commit:taxeditor|8d0745f082c9b46d97adbef11901d6e00f458ad9. Katja Luther
01:30 PM bug #7237 (Feedback): Status are not deletable in TaxEditor distribution status
It does not work. Saving throws
~~~
org.eclipse.e4.core.di.InjectionException: org.springframework.dao.InvalidDat...
Andreas Müller
01:48 PM bug #7219 (Closed): CacheLoader.loadRecursive() fails handling proxy objects correctly
Andreas Kohlbecker
01:48 PM bug #6987 (Closed): LIE during name catalogue service call processing
Andreas Kohlbecker
01:47 PM feature request #7234 (Closed): Make areas in TaxEditor distribution editor sortable
seems to work Andreas Müller
01:43 PM feature request #7224 (Closed): PersonField: implement support for 'initials' field
works as expected Andreas Kohlbecker
01:41 PM bug #6075 (Closed): harmonize ' Enable auto-suggest' option with existing code
Andreas Kohlbecker
01:37 PM feature request #6740: Popup Editor for NameTypeDesignation
Hi Henning,
please do the review of this implementation:
* Functionality as expected?
* All required fields av...
Andreas Kohlbecker
01:32 PM task #7269 (Closed): Use redmine as message hub for submitter curator communication
The Redmine issue system will be used to establish asynchronous communication between *curator* and *submitters*, whi... Andreas Kohlbecker
01:24 PM bug #7263 (Closed): Protected title cache for persons does not work
Looks fine Andreas Müller
10:45 AM bug #6159: improve distribution editor in TaxEditor
save only the changed taxa is implemented with Revision 7e2465ad Katja Luther
10:41 AM feature request #7264 (Rejected): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude ...
Hening:
Gauss-Krüger ist ein Sonderfall, dafür müssen wir nichts implementieren.
Andreas Kohlbecker
10:11 AM feature request #7268 (Closed): Re-implement own preference dialog
Note: Also clean up p2 related code because we are now just using one update site at a time. Patrick Plitzner
10:08 AM feature request #7267 (Rejected): Migrate about dialog
The current about dialog is based on e3 technology.
We would have to rewrite it from scratch
Patrick Plitzner

02/13/2018

05:15 PM bug #7153 (Closed): Implement possibility to "logout" completely from TaxEditor
Created new ticket and re-closed this one. Andreas Müller
05:13 PM bug #7153 (Feedback): Implement possibility to "logout" completely from TaxEditor
The storing location should be implemented differently. Therefore I reopen the ticket. Andreas Müller
03:09 PM bug #7153 (Closed): Implement possibility to "logout" completely from TaxEditor
The login informations are stored in eu.etaxonomy.taxeditor.store.prefs and they are deleted when remember login data... Katja Luther
03:34 PM feature request #7264 (Rejected): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude ...
see: https://de.wikipedia.org/wiki/Gau%C3%9F-Kr%C3%BCger-Koordinatensystem
The Gauss-Krüger values for log and l...
Andreas Kohlbecker
03:15 PM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty
the delete is still performed immediately Katja Luther
02:29 PM bug #7263: Protected title cache for persons does not work
please review Katja Luther
02:27 PM bug #7263 (Resolved): Protected title cache for persons does not work
Katja Luther
02:27 PM bug #7263 (Closed): Protected title cache for persons does not work
when the titleCache is set to protected, changes of the atomised data yields to an update of the titleCache.this is a... Katja Luther
02:05 PM feature request #7262 (Resolved): add progress monitor to csv print export and cdm light export
like dwca export csv print and cdm light export should use the progress monitor Katja Luther
02:03 PM bug #7261 (New): Exception after deleting nameRelation and creating new one
Hallo,
Fl. Cuba, bei Anastraphia northropiana
Falsche Name-Relationship für Syn. Gochnatia ilicifolia gelöscht (is...
Katja Luther
02:01 PM feature request #7260 (New): Multi language support for feature trees
Implement multi language support for feature trees.
Currently, the "name" of a feature tree is set via setTitleCac...
Patrick Plitzner
01:52 PM bug #7259: [DISCUSS] After swap accepted <-> synonym move taxon to correct genus
WGB: richtig automatisch fände ich gar nicht gut, aber wenn einem der Parent schon rausgesucht und vorgeschlagen wird... Andreas Müller
01:36 PM bug #7259 (New): [DISCUSS] After swap accepted <-> synonym move taxon to correct genus
After swapping often a taxon needs to be moved to a new parent (e.g. because the new accepted species name belongs to... Andreas Müller
12:26 PM bug #6786: Remaining feature tree editor issues
Andreas M.: Could you review the last three committs? Patrick Plitzner
12:25 PM bug #6786 (Feedback): Remaining feature tree editor issues
Patrick Plitzner
12:14 PM feature request #7251: Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator
OK, now I understand. I did not see that it was a subticket.
I also did not expect it to be a subticket as we have a...
Andreas Müller
10:14 AM feature request #7251: Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator
Andreas Müller wrote:
> was this ticket on purpose for me? I don't feel responsible for the vaadin issues. But of co...
Andreas Kohlbecker
09:42 AM feature request #7251: Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator
was this ticket on purpose for me? I don't feel responsible for the vaadin issues. But of course for an according tic... Andreas Müller
10:05 AM bug #7252 (Feedback): createdby_id often is null
I consider this as problematic since it it a source for potential errors and misuse of the cdm entities.
We are very...
Andreas Kohlbecker
09:39 AM bug #7252 (Resolved): createdby_id often is null
This is often the case for imports running from commandline. They can run without authentification. It is also the ca... Andreas Müller
09:43 AM task #6839 (Rejected): remove old workbench.xmi from .cdmlibrary
Ok, thank you for the clarification!!! Andreas Kohlbecker
09:40 AM task #6839: remove old workbench.xmi from .cdmlibrary
Andreas Kohlbecker wrote:
> Sorry for stubbornly poking again into this. But the questions that Andreas M and K rais...
Patrick Plitzner
09:10 AM task #6839 (Feedback): remove old workbench.xmi from .cdmlibrary
Sorry for stubbornly poking again into this. But the questions that Andreas M and K raised are not clearly answered. ... Andreas Kohlbecker

02/12/2018

09:04 PM feature request #7244: DistributionStatus editor help
WGB: ein guter Hinweis für die Doku (ich nehme die auch mit in’s Word Dokument): Brower page backwards ist zu vermeid... Andreas Müller
05:40 PM bug #7258 (New): Taxon interaction not correctly shown in Taxon Details of Distribution Editor fo...
The tree does not open when clicking on the feature (see screenshot)
Here it is for the "Families in other Floras"...
Andreas Müller
05:16 PM feature request #7257 (Closed): Activate Enter key to send login in vaadin login
When logging into a CDM vaadin app it would be comfortable to activate the "Enter" key such that after entering the c... Andreas Müller
02:53 PM feature request #7256 (New): Make import references filterable
A first step could be to add an according marker type. In a second step we may implement a filter based on the marker... Andreas Müller
01:33 PM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10
Hallo,
habe versucht, unter Cochlospermaceae ein neues Taxon (Gattung) einzugeben – Save – Fehler
HG
W
~~~ text...
Katja Luther
01:32 PM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10
Hallo,
beim Vergeben eines nom. Status (blocking Name for) im Bulk Editor; Save -> Fehler
Merkwürdigerweise ist dan...
Katja Luther
01:30 PM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10
Hallo,
weiß nicht, ob das immer das gleiche Problem ist, sicherheitshalber:
Neue Gattung erstellt. Gleich darauf ...
Katja Luther
01:29 PM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10
mail von Walter:
4 Synonyme hinzugefügt, korrigiert (ich war zu schnell beim Einfügen, der Editor wartet mit dem E...
Katja Luther
10:44 AM feature request #7255 (New): Sort taxa by rank and alphabet in distribution editor (vaadin)
"Auch hier wäre eine systematische Anordung bei Gattung und Art und Infraspezifisch nützlich, da sich der Gattungsnam... Andreas Müller
10:41 AM bug #7254 (New): Filter in vaadin distribution editor throws exception
in cuba database
"es scheint, als ob die SQL-Abfrage bei dem Taxonfilter nicht funktioniert. Wenn man über das Au...
Andreas Müller
09:58 AM task #6839 (Rejected): remove old workbench.xmi from .cdmlibrary
Closing this as rejected as this file in this location does not serve any purpose anymore Patrick Plitzner
09:01 AM bug #7237: Status are not deletable in TaxEditor distribution status
please review Katja Luther

02/11/2018

06:47 PM task #6839: remove old workbench.xmi from .cdmlibrary
Yes, I remember something similar. Patrick, you probably know best what the workbench.xmi is, was or will be needed f... Andreas Müller
06:41 PM feature request #7234: Make areas in TaxEditor distribution editor sortable
Katja Luther wrote:
> in the vaadin distribution editor only namedAreas of one vocabulary can be choosen, should it ...
Andreas Müller

02/09/2018

05:14 PM feature request #7253 (New): TaxonNameEditor mode replaced synonym
Andreas Kohlbecker
05:13 PM feature request #7253 (Duplicate): TaxonNameEditor mode replaced synonym

complete issue #6871 by adding the "Replaced synonym" checkbox:
* Replaced synonym:
* The type is associated...
Andreas Kohlbecker
05:14 PM feature request #6871 (Closed): TaxonNameEditor modes for basionym, replaced synonym and validation
Andreas Kohlbecker
05:07 PM bug #7197 (Closed): system-admin autheticated through RunAsAuthenticator can stay authenticated a...
this can no longer be reporoduced and thus is fixed for sure Andreas Kohlbecker
04:44 PM bug #7252 (Feedback): createdby_id often is null
Hi Andreas,
what can be the cause for this odd issue.
Andreas
Andreas Kohlbecker
04:43 PM bug #7252 (Closed): createdby_id often is null
## Examples
**cdm_production_phycobank**
* TaxonName
* is null: 1766
* not null: 533
* Registration
*...
Andreas Kohlbecker
02:56 PM bug #7031 (Resolved): Open in referencing objects view must not show "Open in referencing Objects"
Applied in changeset commit:taxeditor|33957b862e110d7c9c33a39847968de12dc2fe1f. Patrick Plitzner
02:49 PM bug #7024 (Rejected): Preference pages are shown in editor parts
this happened because of a third-party e4 library that we decided to not use anymore but instead create our own e4 pr... Patrick Plitzner
02:48 PM bug #7030: Opening referenced object of type designation throws NPE
Fixed potential NPE.
I think the title of the issue is a bit misleading because this has nothing to do with type d...
Patrick Plitzner
02:47 PM bug #7030 (Resolved): Opening referenced object of type designation throws NPE
Applied in changeset commit:taxeditor|5a308801e070b55b7ba73e8d69dfd12748d6578f. Patrick Plitzner
02:38 PM bug #6751 (Feedback): After shutdown error message in log file
Katja, does this still happen. When testing from the workspace this does not happen for me. Patrick Plitzner
02:24 PM feature request #6909: Migrate taxon navigator
I just had the problem that hitting "New->Classification" did nothing, not even an exception. I fixed the handler for... Patrick Plitzner
10:38 AM feature request #6909: Migrate taxon navigator
Andreas, could you test again it the creation of the first classification still throws an exception? I just tried and... Patrick Plitzner
12:46 PM bug #7207: TeamOrPersonField and PersonField comboboxSelect is configurable to use different cach...
Henning can you please do the review? Andreas Kohlbecker
12:39 PM bug #7207 (Resolved): TeamOrPersonField and PersonField comboboxSelect is configurable to use dif...
Applied in changeset commit:cdm-vaadin|85ddc5385f7c275c0277850457a76677bf597947. Andreas Kohlbecker
12:34 PM feature request #7251 (New): Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator
In the TeamOrPersonBaseCaptionGenerator the the collector title is commented:
~~~java
@Override
public Strin...
Andreas Kohlbecker
10:48 AM bug #7249 (Feedback): NameTypeDesignationEditor delete not working
Hi Katja,
how can I delete NameTypeDesignations?
the below code does not work:
~~~java
@Override
...
Andreas Kohlbecker
09:53 AM bug #7064: NameEditor remaining issues
move issue to master issue for bugs Patrick Plitzner
09:53 AM bug #7038: PK Graph view issues
move issue to master issue for bugs Patrick Plitzner

02/08/2018

06:18 PM bug #7246 (Closed): ToOneRelatedEntityReloader.valueChange() not triggered after editing bean cho...
Andreas Kohlbecker
06:17 PM bug #7246 (Resolved): ToOneRelatedEntityReloader.valueChange() not triggered after editing bean c...
Applied in changeset commit:cdm-vaadin|f9fb33d56a2eb5446588c1a378ec99647c7a8dcf. Andreas Kohlbecker
06:18 PM bug #7174 (Closed): SpecimenTypeDesignationWorkingsetEditor image reference add and edit problems
Andreas Kohlbecker
02:16 PM bug #7079: P2 updates not found
Ah, das ist ja interessant. Weiß nicht, ob dort etwas steht, aber ich werde mal schauen. Patrick Plitzner
09:16 AM bug #7079: P2 updates not found
Ich habe testweise den redirect auf https im server deaktiviert und das update hat prompt geklappt.
@patrick: Steh...
Andreas Kohlbecker
08:42 AM bug #7079: P2 updates not found

> Es sieht so aus als würde der taxeditor nach dem 2ten redirect einfach nicht weiter machen .
>
Sorry, das wa...
Andreas Kohlbecker
01:22 PM feature request #7234 (Resolved): Make areas in TaxEditor distribution editor sortable
Katja Luther
01:09 PM feature request #7234: Make areas in TaxEditor distribution editor sortable
now there is a comparator for OrderedTerms used and the terms are ordered first by vocabulary (titleCache) and then b... Katja Luther

02/07/2018

06:22 PM feature request #6779 (Feedback): Allow drag&drop for features in GrantedAuthority editor
I added DnD support for features but when you drag a feature into the editor a parse error occurrs.
@Andreas M.: Cou...
Patrick Plitzner
05:32 PM feature request #7195 (Closed): RegistrationWorkingsetEditor creates blocking relations for new b...
Andreas Kohlbecker
02:40 PM feature request #7195 (Resolved): RegistrationWorkingsetEditor creates blocking relations for new...
now blocking registrations are apparently fully implemented. Andreas Kohlbecker
05:32 PM feature request #7130 (Closed): Registrations ListView allows filtering the list of registrations
Andreas Kohlbecker
05:30 PM bug #7247 (Closed): TypeDesignationSetManager must not bundle NameTypes in workingset
Andreas Kohlbecker
04:27 PM bug #7247 (Resolved): TypeDesignationSetManager must not bundle NameTypes in workingset
Applied in changeset commit:cdm-vaadin|843f448b234e1e763faf4d9b8485da2e3a4db45d. Andreas Kohlbecker
05:08 PM task #6839: remove old workbench.xmi from .cdmlibrary
There where glitches with the views that where restored from previous executions of the Taxeditor. Deleting the work... Andreas Kohlbecker
04:48 PM task #6839 (Feedback): remove old workbench.xmi from .cdmlibrary
I do not remember why we created this ticket. Is it really that important to remove the file because it is completely... Patrick Plitzner
04:44 PM bug #6551 (Worksforme): Invalid parts
This does not happen anymore Patrick Plitzner
03:10 PM feature request #7076 (Resolved): Add Nebula CompositeTable as direct dependency
tested latest change with nightly and p2 update. Everything seems to work. Patrick Plitzner
03:09 PM bug #7064: NameEditor remaining issues
after drag & drop of a synonym the old homotypical group is not correctly updated, see attached files Katja Luther
02:27 PM feature request #7234: Make areas in TaxEditor distribution editor sortable
in the vaadin distribution editor only namedAreas of one vocabulary can be choosen, should it be the same in the taxE... Katja Luther
01:43 PM bug #6075 (Resolved): harmonize ' Enable auto-suggest' option with existing code
Applied in changeset commit:cdm-dataportal|023c4a03b112854eef6b2f8de74711e5217c39d6. Patrick Plitzner
10:35 AM feature request #6762 (Closed): Implement Character Editor
With the implementation of the WS editor and the character matrix this has been tested enough to close this ticket. N... Patrick Plitzner
10:29 AM feature request #7086 (Closed): Implement WorkingSet Editor
Closing this because the WS editor has been released. Patrick Plitzner
10:29 AM feature request #7095 (Closed): Implement Character Matrix
Closing this ticket because the character matrix has been released Patrick Plitzner
10:27 AM feature request #6538: Add perspectives for working character data/matrix
Fixed with commit:taxeditor|e1cddd4602b04fc07fd9a49aef61a9d84b778b62 Patrick Plitzner
10:25 AM feature request #6538 (Closed): Add perspectives for working character data/matrix
Patrick Plitzner
10:24 AM feature request #7196 (Closed): Check existing data when adding specimens to CharacterMatrix
Patrick Plitzner
10:19 AM feature request #6618 (Closed): Add link to Structure, Property, Method(?) and Type(?)
this has been implemented Patrick Plitzner
10:17 AM feature request #6529 (Closed): Extend WorkingSet to allow a more fine grained definiton of taxon...
this is fixed. WorkingSets do not have to be IdentifiableEntities because we now use the working set navigator and no... Patrick Plitzner

02/06/2018

03:48 PM bug #7250: add null checks to TeamDefaultCacheStrategy
Andreas Müller, please review the code changes are correct. I was a bit unclear about the role of paramter `i` in `c... Andreas Kohlbecker
03:46 PM bug #7250 (Resolved): add null checks to TeamDefaultCacheStrategy
Applied in changeset commit:cdmlib|02f58c709c8e2ea7cd2bc2a8e0fd529a80be54c2. Andreas Kohlbecker
03:44 PM bug #7250 (Closed): add null checks to TeamDefaultCacheStrategy
team members are not being null-checked.
In UIs members can be null at a point in the application life cycle when ...
Andreas Kohlbecker
03:17 PM bug #7249 (Closed): NameTypeDesignationEditor delete not working
even after the changes applied in commit:cdm-vaadin|3b66edef delete is not working
Andreas Kohlbecker
02:54 PM task #7248 (New): Remove extra transaction in CdmStore.deleteBean(T bean, AbstractView view)
transactions wrapped around CdmStore.deleteBean(T bean, AbstractView view) are a leftover of the views running in a c... Andreas Kohlbecker
02:24 PM bug #7247 (Closed): TypeDesignationSetManager must not bundle NameTypes in workingset
When two NameTypeDesignations for with the same typeName are related to a registration the TypeDesignationSetManager ... Andreas Kohlbecker
02:07 PM bug #7246 (Closed): ToOneRelatedEntityReloader.valueChange() not triggered after editing bean cho...

**ToManyRelatedEntitiesComboboxSelect example**
1. Open Name Popupeditor of name having a basionym
2. click the...
Andreas Kohlbecker
01:49 PM bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree
This seems to be a problem when the setSecundumForSubtree method was called with the same reference before. Katja Luther
09:06 AM bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree
now this problem also appears whithout the progress monitor.
Hallo,
habe versucht, für die ganzen Apocynaceae in ...
Katja Luther
09:00 AM bug #7245 (Closed): validation of ToOneRelatedEntityCombobox not working
ToOneRelatedEntityCombobox set to required are not validated when the editor is comitted.
validation is only trigg...
Andreas Kohlbecker

02/05/2018

02:34 PM feature request #7244 (Resolved): DistributionStatus editor help
Add help button to the DistributionStatus editor with content like:
~~~
1. Nach dem Einloggen erscheint der ...
Andreas Kohlbecker
01:03 PM bug #7243 (Duplicate): sometimes the context menu in name editor does not work anymore
sometimes the right click menu of the names in name editor does not show up anymore.
Katja Luther
12:59 PM feature request #7234 (In Progress): Make areas in TaxEditor distribution editor sortable
Katja Luther
12:59 PM feature request #7234: Make areas in TaxEditor distribution editor sortable
we should use the same comparator. therefore we need to move the AlphabeticallyAscendingNamedAreaComparator to cdmlib Katja Luther
12:32 PM bug #7237 (Resolved): Status are not deletable in TaxEditor distribution status
Applied in changeset commit:taxeditor|7a1050358100c7de9e619f7da9812261fac18e83. Katja Luther
10:58 AM bug #5371: all name parts of taxa with flag doubtful = true are displayed in italic
Hallo,

das Anhaken von Taxonnamen im Editor als "Taxon is doubtful" oder "synonym is doubtful", das im Portal ein...
Andreas Kohlbecker

02/02/2018

03:35 PM bug #7096: Add second symbol attribute to DefinedTermBase
2056 naturalised was mistakenly created Andreas Müller
12:27 PM bug #7096: Add second symbol attribute to DefinedTermBase
|id|titleCache|idInVocabulary|symbol|n|vocabulary_id|
|---|---|---|---|---|---|
|2065|endemic|e|●|2975|30|
|2062|n...
Andreas Müller
03:34 PM bug #7105: potential dangerous use of factory.openSession()
Strange, I can't change priority in this ticket. AK, can you change it to highest? Andreas Müller
03:28 PM bug #7241: Missing rights are not correctly indicated in Vaadin distribution editor - flexible va...
vaddin allows setting an `com.vaadin.server.ErrorHandler` for UIs and components. The caveat with this builtin apprao... Andreas Kohlbecker
02:58 PM bug #7241 (Closed): Missing rights are not correctly indicated in Vaadin distribution editor - fl...
If a user has not enough rights to edit a distribution in the Vaadin Distribution Editor this is only indicated by an... Andreas Müller
03:05 PM bug #7242 (New): Distribution status not correctly shown in Taxon Details of Distribution Editor ...
In the cuba database the distribution status is shown only for the last entry in the taxon details view in Vaadin dis... Andreas Müller
01:13 PM bug #7240 (Closed): Rename last name by family name and first name by "Other/given names"
Andreas Kohlbecker
01:13 PM bug #7240 (Resolved): Rename last name by family name and first name by "Other/given names"
Applied in changeset commit:cdm-vaadin|d8e0a88ca85b40cca38d75cd6ebdf290a5d07641. Andreas Kohlbecker
11:40 AM bug #7240 (Closed): Rename last name by family name and first name by "Other/given names"
in PersonsField. Andreas Kohlbecker
10:46 AM bug #7239 (Closed): Rename last name by family name and first name by "Other/given names"
in Taxeditor.
Also move family name up and Other/given names down.
Andreas Müller
10:27 AM task #7238 (Closed): Rename lastName and firstName
According to https://www.w3.org/International/questions/qa-personal-names.en#fielddesign last name should better be c... Andreas Müller

02/01/2018

11:32 PM bug #7237 (Closed): Status are not deletable in TaxEditor distribution status
It is currently not possible to remove a status from an area completely via TaxEditor distribution editor.
There s...
Andreas Müller
11:21 PM bug #7236 (Feedback): Make available distribution status a database preference for TaxEditor dist...
Similar to same functionality in vaadin editor (#7028).
Vaadin example given for cuba.
Andreas Müller
11:14 PM feature request #7235 (Closed): Make available area vocabularies a database preference for TaxEdi...
See also similar implementation for Vaadin distribution editor (part of #6903).
Vaadin example exists for cuba.
...
Andreas Müller
09:52 PM feature request #7234 (Closed): Make areas in TaxEditor distribution editor sortable
Current sort order is only alphabetically. We also need an vocabulary based sort order (order by order in vocabularie... Andreas Müller
09:39 PM bug #6326 (Worksforme): Login from taxeditor not possible after logging out of vaadin distributio...
I can't reproduce this anymore. I tested on cuba production. Probably it is fixed with the above commit or with the g... Andreas Müller
03:53 PM bug #7233 (New): LIE during processing of webservice request to /portal/taxon/{uuid}/taxonNodes
The call http://api.cybertaxonomy.org/flora-malesiana/portal/taxon/02db28ed-58ee-4c42-af0e-b8e05e69ee0b/taxonNodes
...
Andreas Kohlbecker
03:45 PM bug #7096: Add second symbol attribute to DefinedTermBase
After doing so revert idInVocabulary in Cuba Database
NOT complete !!!
~~~
REPLACE INTO `DefinedTermBase` (`id...
Andreas Müller
03:36 PM bug #6811 (Closed): View and according Presenter are initialized 3x
Andreas Kohlbecker
03:25 PM bug #6811 (Worksforme): View and according Presenter are initialized 3x
most probably fixed by #7231 Andreas Kohlbecker
03:31 PM bug #6562 (Closed): vaadin mvp framwork presenters without view
can no longer reproduce, this is most probably fixed by #7231 Andreas Kohlbecker
03:26 PM bug #7231 (Closed): replace the SpringApplicationBus by Vaadin4Spring Event Bus in scoped contexts
Andreas Kohlbecker
02:56 PM bug #7231 (Resolved): replace the SpringApplicationBus by Vaadin4Spring Event Bus in scoped contexts
Applied in changeset commit:cdm-vaadin|be4a97890b3a6e3e67b4be334dcc7d4ead99fd35. Andreas Kohlbecker
07:50 AM bug #7231 (Closed): replace the SpringApplicationBus by Vaadin4Spring Event Bus in scoped contexts
The SpringApplicationBus causes a couple probelms where it is being used in scoped spring contexts (see related ticke... Andreas Kohlbecker
03:11 PM bug #7229 (Closed): obsolte code in AbstractEditorPresenter.onEditorDeleteEvent?
Andreas Kohlbecker
03:04 PM feature request #7232 (New): send events from view to presenter direcly
events from view which are dedicated to the according presenter are sent via the viewEventBus.
This a bad idea when ...
Andreas Kohlbecker

01/31/2018

03:06 PM bug #7209: use git repos instead of svn in all pom.xml
I replaced all occurrences in cdmlib poms by copies taken from cdmlib-cache. However, I am not sure if it is correct ... Andreas Müller
02:53 PM bug #7209 (Resolved): use git repos instead of svn in all pom.xml
Applied in changeset commit:cdmlib|fd5ffb2d759b962f88558924f3c25ed6f40e190a. Andreas Müller
02:42 PM bug #7209 (In Progress): use git repos instead of svn in all pom.xml
Andreas Müller
01:35 PM feature request #6871: TaxonNameEditor modes for basionym, replaced synonym and validation
partially solved, copy remaining tasks to follow up ticket Andreas Kohlbecker
01:33 PM bug #7151 (Rejected): entities held in CdmCache can not be modified
no longer valid since we switched to another cache implementation, see #7206 Andreas Kohlbecker
01:28 PM bug #7197 (Resolved): system-admin autheticated through RunAsAuthenticator can stay authenticated...
most probably fixed but needs manual testing Andreas Kohlbecker
01:27 PM bug #7206 (Closed): CdmEntityCache not correctly updating with entitiy graphs loaded afterwards
CdmEntityCache has been completely replaced by CdmTransientEntityCacher Andreas Kohlbecker
01:05 PM bug #7176 (Resolved): published=false for Taxon where the according TaxonName is associated with...
review if complete Andreas Kohlbecker
01:00 PM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty
is this still an open issue? Andreas Müller
12:56 PM bug #7117 (Closed): Some bugs in Misapplied Name View after e4 migration
copied open issue to new ticket #7230 Andreas Müller
12:54 PM bug #7230 (Closed): Refresh in name editor does not work if using "reuse taxon" in Misapplied Nam...
(but details view is refreshed - at least the upper part) Andreas Müller
12:43 PM feature request #7076: Add Nebula CompositeTable as direct dependency
Is this still an open issue? Andreas Müller
12:42 PM bug #7112 (In Progress): Ask for saving dirty editors when closing Taxeditor
Andreas Müller
12:41 PM feature request #7196 (In Progress): Check existing data when adding specimens to CharacterMatrix
Andreas Müller
12:15 PM task #7216 (In Progress): Import pteridophyta for Cuba checklist
Andreas Müller
08:31 AM bug #7229 (Closed): obsolte code in AbstractEditorPresenter.onEditorDeleteEvent?
changing the Flush mode in is most likely obsolete:

~~~java
/**
* Regarding changing the Flush mode see se...
Andreas Kohlbecker

01/30/2018

03:04 PM bug #7108 (Feedback): supress unwanted sourcetypes in handle_annotations_and_sources()
Works fine now and ticket can be closed.
I only wonder if only a citation micro reference is given (without citati...
Andreas Müller
03:01 PM bug #7108: supress unwanted sourcetypes in handle_annotations_and_sources()
Example for an existing PrimaryMediaSource: http://portal.cybertaxonomy.org/flora-greece/cdm_dataportal/media/d7332d3... Andreas Müller
01:53 PM bug #7080 (Closed): Fix matching for empty time periods
Andreas Müller
01:12 PM feature request #7121 (Feedback): adapt remaining UuidAndTitleCache methods to use filter
Works correctly now. Can you still connect the revert of using uuidAndTitleCache search in AnnotatableService/Dao to ... Andreas Müller
01:04 PM bug #7098 (Feedback): reuse name does not work
It seems to work.
Only question I have is:
In the code the current line 734
~~~
dao.saveOrUpdate(parent);
...
Andreas Müller
12:12 PM feature request #7102: Enable EDIT and DELETE for specimen determinations
Andreas Müller wrote:
> Deleting the name should also delete the taxon
This sometimes works immediately but after...
Andreas Müller
12:01 PM feature request #7102: Enable EDIT and DELETE for specimen determinations
Deleting the name should also delete the taxon Andreas Müller
11:59 AM feature request #7102: Enable EDIT and DELETE for specimen determinations
EDIT for taxa gives a strange message (see screenshot) Andreas Müller
11:57 AM feature request #7102 (Feedback): Enable EDIT and DELETE for specimen determinations
Delete on taxon gave an NPE
~~~
login : admin
editor version : 4.13.0.201801292346
server : test.e-taxonomy.eu ...
Andreas Müller
11:53 AM feature request #7065 (Feedback): When updating a subtree the affected and opened taxa are not up...
If there is an accepted taxon and a synonym, the accepted taxon shows the correct value (tested for "publish"). Switc... Andreas Müller
11:33 AM bug #7069 (Feedback): Delete taxon node should have consistent configuration
I removed duplication in German label. Please confirm (1d720e10dd7db8)
Generally it works. 2 further open issues:
...
Andreas Müller
10:34 AM bug #7153 (Feedback): Implement possibility to "logout" completely from TaxEditor
Seems to work, but I can't find the place where the credentials are actually stored when "remember login data" is che... Andreas Müller
10:19 AM feature request #7228 (Closed): Add concept and referencing objects view to supplemental view lay...
Seems to work Andreas Müller

01/29/2018

05:30 PM feature request #6740 (Resolved): Popup Editor for NameTypeDesignation
Applied in changeset commit:cdm-vaadin|51d6bc3c703209cc0af89380800c364d876d6ed2. Andreas Kohlbecker
03:21 PM bug #7227: New name bulk editor shows all menu entries
The problem seems to appear also in other bulk editors (e.g. person/team) and not only after restarting the TaxEditor... Andreas Müller
03:10 PM bug #7227 (Worksforme): New name bulk editor shows all menu entries
When opening the TaxEditor + connect to datasource, then open the name bulk editor and before running a first search ... Andreas Müller
03:18 PM feature request #7228 (Resolved): Add concept and referencing objects view to supplemental view l...
Applied in changeset commit:taxeditor|8dfb9731e1f7e14b7f7d997950fa60f6dce44806. Patrick Plitzner
03:17 PM feature request #7228 (Closed): Add concept and referencing objects view to supplemental view lay...
Patrick Plitzner
02:29 PM bug #7226 (Closed): Name relationship Dialog shows same name
Via the name relationship dialog it is possible to create relationships that have the same from- and to-name. This sh... Andreas Müller

01/27/2018

10:41 PM feature request #7224 (Resolved): PersonField: implement support for 'initials' field
Applied in changeset commit:cdm-vaadin|31a2f09bdfad95a97af3562f10fe69e1e9312d9c. Andreas Kohlbecker
01:47 PM bug #7124: Avoiding multiple repesentation exceptions by removing the conversation from selection...
Is this still an open issue? If yes please move to an open target version. Andreas Müller

01/26/2018

03:34 PM feature request #7225 (New): RegistrationUI checks authenticated user for constant PermissionGroups
the system should check the set of PermissionGroups given to the authenticated user for consistency according to the ... Andreas Kohlbecker
02:04 PM feature request #7224 (Closed): PersonField: implement support for 'initials' field
The Person class has a field for initials. Andreas Kohlbecker
02:02 PM bug #7223 (Feedback): ReferenceEditor: disable fields depending on the Reference type
e.g.: hide authorship if type = journal
The Taxonomic Editor behaves the same but the information which field to s...
Andreas Kohlbecker
01:28 PM bug #7222 (Closed): Phycobank UI improve labels
----
![](picture575-1.png)
"Start a new registration process either for a name or typification."
Das hört sich...
Andreas Kohlbecker

01/25/2018

10:05 PM bug #7221 (New): Editing the taxon in a taxon interaction not possible, missing detail element
In a taxon interaction clicking on the edit button to edit the already selected taxon opens a dialog but no data is s... Andreas Müller
06:54 PM bug #7220 (Worksforme): Permission Denied in readonly mode of TypeDesignationEditor
open type from http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/45
![](picture696-1.pn...
Andreas Kohlbecker
06:26 PM feature request #6871 (In Progress): TaxonNameEditor modes for basionym, replaced synonym and val...
Andreas Kohlbecker
05:55 PM bug #7219: CacheLoader.loadRecursive() fails handling proxy objects correctly
please review somebody! Andreas Kohlbecker
05:53 PM bug #7219 (Resolved): CacheLoader.loadRecursive() fails handling proxy objects correctly
Applied in changeset commit:cdmlib|8604cc76ef9d8f3c747f3116b89fa26b750cd562. Andreas Kohlbecker
05:52 PM bug #7219 (Closed): CacheLoader.loadRecursive() fails handling proxy objects correctly
The method
~~~java
CacheLoader.loadRecursive(CdmBase cdmEntity, List<Object> alreadyVisitedEntities, boolean upda...
Andreas Kohlbecker
11:32 AM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher
Andreas Kohlbecker wrote:
> Oha, das war mir noch garnicht aufgefallen, danke für diesen Hinweis Katja:
>
> diese...
Katja Luther
11:12 AM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher
Oha, das war mir noch garnicht aufgefallen, danke für diesen Hinweis Katja:
diese methode verwendet am ende die `l...
Andreas Kohlbecker
11:07 AM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher

Soweit ich den Code richtig interpretiere, gibt es ja zwei Möglichkeiten ein Objekt in den Cache zu laden, entweder...
Andreas Kohlbecker
10:46 AM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher
The potential issue regarding the CacheLoaderload() method mentioned above is correct behavior. I guess I was a bit t... Andreas Kohlbecker
11:26 AM feature request #7218 (Closed): SpecimenTypedesignationsWorkingsetEditor: support for Reference ...
Reference-System nicht bearbeitbar. Keine hohe Priorität, eventuell später Auswahl mit Voreinstellung WGS 84
Andreas Kohlbecker
11:25 AM feature request #7217 (Closed): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fi...
there are various degrees minutes seconds formats, it is impossible to support all of them, we thus need to select th... Andreas Kohlbecker
11:17 AM task #7216 (Resolved): Import pteridophyta for Cuba checklist
Andreas Müller
11:12 AM feature request #7158: Add pro parte misapplied name to the concept relationship types
Hi Katja, can you please review, including checking the code changes. Especially the one in the search algorithm is i... Andreas Müller
09:26 AM feature request #7215 (Closed): Implement pro parte misapplied names in TaxEditor
Pro parte MANs have been implemented in cdmlib (#7158). Now we also need them in TaxEditor.
We need:
Maybe the ...
Andreas Müller

01/24/2018

12:11 AM feature request #7158 (Resolved): Add pro parte misapplied name to the concept relationship types
Applied in changeset commit:cdmlib|e9baa019557b3aa3bd8c858dc60ab136ee8439af. Andreas Müller
01:54 PM feature request #7158: Add pro parte misapplied name to the concept relationship types
It was orally discussed that a new relationship type is enough to implement this issue.
Maybe we then also want a ...
Andreas Müller
06:17 PM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher
Can you give more details on the issue to discuss?
Who should be Asignee?
Andreas Müller
05:04 PM task #7214 (New): discuss unexpected method behaviors in CdmTransientEntityCacher

## CdmTransientEntityCacher
~~~java
/**
* Puts the passed ...
Andreas Kohlbecker
01:58 PM feature request #7180 (Closed): cdm light export optionally filters by published flag
Katja Luther
01:46 PM feature request #7180: cdm light export optionally filters by published flag
I think we can close this ticket now Andreas Müller
10:38 AM feature request #7180: cdm light export optionally filters by published flag
Andreas Müller wrote:
> I removed the parameter from the configurator but added it to the TaxonNodeFilter which is a...
Katja Luther
01:35 PM bug #7212: CacheLoader replaces loaded entities with uninitialized proxies
the method signature is not really clear about the behavior of this method
It only de-proxies the passed object `o` ...
Andreas Kohlbecker
11:08 AM bug #7212: CacheLoader replaces loaded entities with uninitialized proxies
because of
~~~ java
o = ProxyUtils.deproxy(o);
~~~
I think o should never be a proxy. or am I wrong??
Katja Luther

01/23/2018

02:15 PM bug #7212: CacheLoader replaces loaded entities with uninitialized proxies
wer kennt sich mit dem cache genügend aus um den review zu machen? Andreas Kohlbecker
02:14 PM bug #7212 (Resolved): CacheLoader replaces loaded entities with uninitialized proxies
Applied in changeset commit:cdmlib|9a2bace3a566987c477b1e5150101b3091a1c292. Andreas Kohlbecker
02:10 PM bug #7212 (Resolved): CacheLoader replaces loaded entities with uninitialized proxies
in the following code loaded entities are replaced by uninitialized proxies.
This completely breaks the caching mech...
Andreas Kohlbecker
11:15 AM task #7211 (New): Strategy for DwC-A Export of references
References are an extension which links to core (taxa).
However, references may link to multiple taxa (or even other...
Andreas Müller
10:59 AM task #5129 (Worksforme): Implement export for remoting
Katja Luther
10:58 AM task #5129: Implement export for remoting
Is this still an open issue? If not, please remove target version and close as Worksforme or Duplicate Andreas Müller
10:45 AM bug #6984: withHeader is not yet working in DwC-A export
please review Andreas Müller
10:43 AM bug #6984 (Resolved): withHeader is not yet working in DwC-A export
Applied in changeset commit:cdmlib|c8e98883485547331b28ced5674c1cb109e8b2b5. Andreas Müller
 

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