Activity

From 01/22/2018 to 02/20/2018

02/20/2018

07:00 PM task #7269 (Resolved): Use redmine as message hub for submitter curator communication: Applied in changeset commit:cdmlib|83d34a190ce9e9decc40866dea9c2a7b5cdf9fe8. Andreas Kohlbecker
01:21 PM feature request #7076: Add Nebula CompositeTable as direct dependency: For review try opening the GrantedAuthority editor. It is the only widget that uses this dependency Patrick Plitzner
12:11 PM bug #7079: P2 updates not found: something extremely interesting happened:
After deleting and recreating the `taxeditor/update/nightly` folder the ... Andreas Kohlbecker
11:33 AM bug #7079: P2 updates not found: test:
1 . deleted exiting `./p2/org.eclipse.equinox.p2.repository/cache/-622154754` file which had the md5 sum: `0... Andreas Kohlbecker
11:23 AM bug #7079: P2 updates not found: supplying some more details to the issue description ... Andreas Kohlbecker
11:58 AM bug #7279 (Closed): p2 sites are extremely huge: Sizes as seen currently:
* 22G nightly
* 9.7G stable
These folders seem to contain more files than need... Andreas Kohlbecker

02/19/2018

05:47 PM bug #7277 (Closed): Add micrometer to MeasurmentUnit: works fine Patrick Plitzner
04:07 PM bug #7277: Add micrometer to MeasurmentUnit: please review Andreas Müller
04:05 PM bug #7277 (Resolved): Add micrometer to MeasurmentUnit: Applied in changeset commit:cdmlib|0b89a342d89273b0039d2feed87daa7b20b0dd20. Andreas Müller
04:04 PM bug #7277 (Closed): Add micrometer to MeasurmentUnit: Andreas Müller
03:28 PM feature request #7268: Re-implement own preference dialog: Copied from #7007:
Katja Luther wrote:
> Opening the preferences now throws an NPE:
>
>
> ~~~ text
> java.l... Patrick Plitzner
02:32 PM feature request #6547: Implement excluded and unplaced in taxon navigator: now there is the excluded/update check in TaxonNodeByNameComparator, so the sorting works for the alphabetic order, t... Katja Luther
02:17 PM feature request #6547 (Resolved): Implement excluded and unplaced in taxon navigator: Applied in changeset commit:cdmlib|65107bf34868fc063c4397f965cf646cdfbe0cb0. Katja Luther
01:39 PM feature request #6547 (Feedback): Implement excluded and unplaced in taxon navigator: Reopen as sorting does not yet work with "alphabetic" sort order, only with "rank + alphabet". Andreas Müller
12:46 PM bug #6679 (Closed): search for misapplied names in portal does not work: Andreas Kohlbecker
12:30 PM bug #6679: search for misapplied names in portal does not work: This can be closed I think. Andreas Müller
12:25 PM feature request #7007: Migrate IMemento functionality: Opening the preferences now throws an NPE:
~~~ text
java.lang.Exception: login : admin
editor version : 4.15.0... Katja Luther
12:14 PM bug #7230 (In Progress): Refresh in name editor does not work if using "reuse taxon" in Misapplied Name View (e4): now the details view and name editor are updated, but there is still a bug in showing the taxonrelationship after the... Katja Luther
12:07 PM task #7023 (In Progress): Replace the vaadin-table of the distribution editor by vaadin-grid: Fabian Reimeier
11:59 AM feature request #7276: Make User.email a unique field.: This only makes sense if email is an obligatory field, which currently is not the case and probably also will not be ... Andreas Müller
10:22 AM feature request #7276 (In Progress): Make User.email a unique field.: Make User.email a unique field.
In the context of password recovery it seems also a requirement to make the email ... Andreas Müller
11:55 AM bug #6804 (In Progress): Order areas in Distribution Selection Editor: Fabian Reimeier
11:24 AM feature request #7275: [DISCUSS] Require email address for Users: Andreas Müller wrote:
> As password recovery is not necessarily a feature needed for all CDM instances the necessity ... Andreas Kohlbecker
10:05 AM feature request #7275: [DISCUSS] Require email address for Users: As password recovery is not necessarily a feature needed for all CDM instances the necessity of obligatory email need... Andreas Müller
11:16 AM feature request #7215 (Resolved): Implement pro parte misapplied names in TaxEditor: Katja Luther

02/17/2018

08:36 AM bug #6679 (Feedback): search for misapplied names in portal does not work: Medicago blancheana subsp. bonarotiana is still not found in Flora of Greece (see ticket description) Andreas Müller

02/13/2018

05:15 PM bug #7153 (Closed): Implement possibility to "logout" completely from TaxEditor: Created new ticket and re-closed this one. Andreas Müller
05:13 PM bug #7153 (Feedback): Implement possibility to "logout" completely from TaxEditor: The storing location should be implemented differently. Therefore I reopen the ticket. Andreas Müller
03:09 PM bug #7153 (Closed): Implement possibility to "logout" completely from TaxEditor: The login informations are stored in eu.etaxonomy.taxeditor.store.prefs and they are deleted when remember login data... Katja Luther
03:34 PM feature request #7264 (Rejected): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values as Gauss-Krüger Koordinates: see: https://de.wikipedia.org/wiki/Gau%C3%9F-Kr%C3%BCger-Koordinatensystem
The Gauss-Krüger values for log and l... Andreas Kohlbecker
03:15 PM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty: the delete is still performed immediately Katja Luther
02:29 PM bug #7263: Protected title cache for persons does not work: please review Katja Luther
02:27 PM bug #7263 (Resolved): Protected title cache for persons does not work: Katja Luther
02:27 PM bug #7263 (Closed): Protected title cache for persons does not work: when the titleCache is set to protected, changes of the atomised data yields to an update of the titleCache.this is a... Katja Luther
02:05 PM feature request #7262 (Closed): add progress monitor to csv print export and cdm light export: like dwca export csv print and cdm light export should use the progress monitor Katja Luther
02:03 PM bug #7261 (New): Exception after deleting nameRelation and creating new one: Hallo,
Fl. Cuba, bei Anastraphia northropiana
Falsche Name-Relationship für Syn. Gochnatia ilicifolia gelöscht (is... Katja Luther
02:01 PM feature request #7260 (New): Multi language support for feature trees: Implement multi language support for feature trees.
Currently, the "name" of a feature tree is set via setTitleCac... Patrick Plitzner
01:52 PM bug #7259: [DISCUSS] After swap accepted <-> synonym move taxon to correct genus: WGB: richtig automatisch fände ich gar nicht gut, aber wenn einem der Parent schon rausgesucht und vorgeschlagen wird... Andreas Müller
01:36 PM bug #7259 (New): [DISCUSS] After swap accepted <-> synonym move taxon to correct genus: After swapping often a taxon needs to be moved to a new parent (e.g. because the new accepted species name belongs to... Andreas Müller
12:26 PM bug #6786: Remaining feature tree editor issues: Andreas M.: Could you review the last three committs? Patrick Plitzner
12:25 PM bug #6786 (Feedback): Remaining feature tree editor issues: Patrick Plitzner
12:14 PM feature request #7251: Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator: OK, now I understand. I did not see that it was a subticket.
I also did not expect it to be a subticket as we have a... Andreas Müller
10:14 AM feature request #7251: Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator: Andreas Müller wrote:
> was this ticket on purpose for me? I don't feel responsible for the vaadin issues. But of co... Andreas Kohlbecker
09:42 AM feature request #7251: Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator: was this ticket on purpose for me? I don't feel responsible for the vaadin issues. But of course for an according tic... Andreas Müller
10:05 AM bug #7252 (Feedback): createdby_id often is null: I consider this as problematic since it it a source for potential errors and misuse of the cdm entities.
We are very... Andreas Kohlbecker
09:39 AM bug #7252 (Resolved): createdby_id often is null: This is often the case for imports running from commandline. They can run without authentification. It is also the ca... Andreas Müller
09:43 AM task #6839 (Rejected): remove old workbench.xmi from .cdmlibrary: Ok, thank you for the clarification!!! Andreas Kohlbecker
09:40 AM task #6839: remove old workbench.xmi from .cdmlibrary: Andreas Kohlbecker wrote:
> Sorry for stubbornly poking again into this. But the questions that Andreas M and K rais... Patrick Plitzner
09:10 AM task #6839 (Feedback): remove old workbench.xmi from .cdmlibrary: Sorry for stubbornly poking again into this. But the questions that Andreas M and K raised are not clearly answered. ... Andreas Kohlbecker

02/12/2018

09:04 PM feature request #7244: DistributionStatus editor help: WGB: ein guter Hinweis für die Doku (ich nehme die auch mit in’s Word Dokument): Brower page backwards ist zu vermeid... Andreas Müller
05:40 PM bug #7258 (New): Taxon interaction not correctly shown in Taxon Details of Distribution Editor for Cuba: The tree does not open when clicking on the feature (see screenshot)
Here it is for the "Families in other Floras"... Andreas Müller
05:16 PM feature request #7257 (Closed): Activate Enter key to send login in vaadin login: When logging into a CDM vaadin app it would be comfortable to activate the "Enter" key such that after entering the c... Andreas Müller
02:53 PM feature request #7256 (New): Make import references filterable: A first step could be to add an according marker type. In a second step we may implement a filter based on the marker... Andreas Müller
01:33 PM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10: Hallo,
habe versucht, unter Cochlospermaceae ein neues Taxon (Gattung) einzugeben – Save – Fehler
HG
W
~~~ text... Katja Luther
01:32 PM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10: Hallo,
beim Vergeben eines nom. Status (blocking Name for) im Bulk Editor; Save -> Fehler
Merkwürdigerweise ist dan... Katja Luther
01:30 PM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10: Hallo,
weiß nicht, ob das immer das gleiche Problem ist, sicherheitshalber:
Neue Gattung erstellt. Gleich darauf ... Katja Luther
01:29 PM bug #6971: Collect all remaining appearances of multiple representation exceptions since 4.10: mail von Walter:
4 Synonyme hinzugefügt, korrigiert (ich war zu schnell beim Einfügen, der Editor wartet mit dem E... Katja Luther
10:44 AM feature request #7255 (New): Sort taxa by rank and alphabet in distribution editor (vaadin): "Auch hier wäre eine systematische Anordung bei Gattung und Art und Infraspezifisch nützlich, da sich der Gattungsnam... Andreas Müller
10:41 AM bug #7254 (Worksforme): Filter in vaadin distribution editor throws exception: in cuba database
"es scheint, als ob die SQL-Abfrage bei dem Taxonfilter nicht funktioniert. Wenn man über das Au... Andreas Müller
09:58 AM task #6839 (Rejected): remove old workbench.xmi from .cdmlibrary: Closing this as rejected as this file in this location does not serve any purpose anymore Patrick Plitzner
09:01 AM bug #7237: Status are not deletable in TaxEditor distribution status: please review Katja Luther

02/11/2018

06:47 PM task #6839: remove old workbench.xmi from .cdmlibrary: Yes, I remember something similar. Patrick, you probably know best what the workbench.xmi is, was or will be needed f... Andreas Müller
06:41 PM feature request #7234: Make areas in TaxEditor distribution editor sortable: Katja Luther wrote:
> in the vaadin distribution editor only namedAreas of one vocabulary can be choosen, should it ... Andreas Müller

02/09/2018

05:14 PM feature request #7253 (New): TaxonNameEditor mode replaced synonym: Andreas Kohlbecker
05:13 PM feature request #7253 (Duplicate): TaxonNameEditor mode replaced synonym: complete issue #6871 by adding the "Replaced synonym" checkbox:
* Replaced synonym:
* The type is associated... Andreas Kohlbecker
05:14 PM feature request #6871 (Closed): TaxonNameEditor modes for basionym, replaced synonym and validation: Andreas Kohlbecker
05:07 PM bug #7197 (Closed): system-admin autheticated through RunAsAuthenticator can stay authenticated after RuntimeException: this can no longer be reporoduced and thus is fixed for sure Andreas Kohlbecker
04:44 PM bug #7252 (Feedback): createdby_id often is null: Hi Andreas,
what can be the cause for this odd issue.
Andreas Andreas Kohlbecker
04:43 PM bug #7252 (Closed): createdby_id often is null: ## Examples
**cdm_production_phycobank**
* TaxonName
* is null: 1766
* not null: 533
* Registration
*... Andreas Kohlbecker
02:56 PM bug #7031 (Resolved): Open in referencing objects view must not show "Open in referencing Objects": Applied in changeset commit:taxeditor|33957b862e110d7c9c33a39847968de12dc2fe1f. Patrick Plitzner
02:49 PM bug #7024 (Rejected): Preference pages are shown in editor parts: this happened because of a third-party e4 library that we decided to not use anymore but instead create our own e4 pr... Patrick Plitzner
02:48 PM bug #7030: Opening referenced object of type designation throws NPE: Fixed potential NPE.
I think the title of the issue is a bit misleading because this has nothing to do with type d... Patrick Plitzner
02:47 PM bug #7030 (Resolved): Opening referenced object of type designation throws NPE: Applied in changeset commit:taxeditor|5a308801e070b55b7ba73e8d69dfd12748d6578f. Patrick Plitzner
02:38 PM bug #6751 (Feedback): After shutdown error message in log file: Katja, does this still happen. When testing from the workspace this does not happen for me. Patrick Plitzner
02:24 PM feature request #6909: Migrate taxon navigator: I just had the problem that hitting "New->Classification" did nothing, not even an exception. I fixed the handler for... Patrick Plitzner
10:38 AM feature request #6909: Migrate taxon navigator: Andreas, could you test again it the creation of the first classification still throws an exception? I just tried and... Patrick Plitzner
12:46 PM bug #7207: TeamOrPersonField and PersonField comboboxSelect is configurable to use different cache types: Henning can you please do the review? Andreas Kohlbecker
12:39 PM bug #7207 (Resolved): TeamOrPersonField and PersonField comboboxSelect is configurable to use different cache types: Applied in changeset commit:cdm-vaadin|85ddc5385f7c275c0277850457a76677bf597947. Andreas Kohlbecker
12:34 PM feature request #7251 (Closed): Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator: In the TeamOrPersonBaseCaptionGenerator the the collector title is commented:
~~~java
@Override
public Strin... Andreas Kohlbecker
10:48 AM bug #7249 (Feedback): NameTypeDesignationEditor delete not working: Hi Katja,
how can I delete NameTypeDesignations?
the below code does not work:
~~~java
@Override
... Andreas Kohlbecker
09:53 AM bug #7064: NameEditor remaining issues: move issue to master issue for bugs Patrick Plitzner
09:53 AM bug #7038: PK Graph view issues: move issue to master issue for bugs Patrick Plitzner

02/08/2018

06:18 PM bug #7246 (Closed): ToOneRelatedEntityReloader.valueChange() not triggered after editing bean chosen in ToOneRelatedEntityCombobox or ToManyRelatedEntitiesComboboxSelect: Andreas Kohlbecker
06:17 PM bug #7246 (Resolved): ToOneRelatedEntityReloader.valueChange() not triggered after editing bean chosen in ToOneRelatedEntityCombobox or ToManyRelatedEntitiesComboboxSelect: Applied in changeset commit:cdm-vaadin|f9fb33d56a2eb5446588c1a378ec99647c7a8dcf. Andreas Kohlbecker
06:18 PM bug #7174 (Closed): SpecimenTypeDesignationWorkingsetEditor image reference add and edit problems: Andreas Kohlbecker
02:16 PM bug #7079: P2 updates not found: Ah, das ist ja interessant. Weiß nicht, ob dort etwas steht, aber ich werde mal schauen. Patrick Plitzner
09:16 AM bug #7079: P2 updates not found: Ich habe testweise den redirect auf https im server deaktiviert und das update hat prompt geklappt.
@patrick: Steh... Andreas Kohlbecker
08:42 AM bug #7079: P2 updates not found: > Es sieht so aus als würde der taxeditor nach dem 2ten redirect einfach nicht weiter machen .
>
Sorry, das wa... Andreas Kohlbecker
01:22 PM feature request #7234 (Resolved): Make areas in TaxEditor distribution editor sortable: Katja Luther
01:09 PM feature request #7234: Make areas in TaxEditor distribution editor sortable: now there is a comparator for OrderedTerms used and the terms are ordered first by vocabulary (titleCache) and then b... Katja Luther

02/07/2018

06:22 PM feature request #6779 (Feedback): Allow drag&drop for features in GrantedAuthority editor: I added DnD support for features but when you drag a feature into the editor a parse error occurrs.
@Andreas M.: Cou... Patrick Plitzner
05:32 PM feature request #7195 (Closed): RegistrationWorkingsetEditor creates blocking relations for new basionym names: Andreas Kohlbecker
02:40 PM feature request #7195 (Resolved): RegistrationWorkingsetEditor creates blocking relations for new basionym names: now blocking registrations are apparently fully implemented. Andreas Kohlbecker
05:32 PM feature request #7130 (Closed): Registrations ListView allows filtering the list of registrations: Andreas Kohlbecker
05:30 PM bug #7247 (Closed): TypeDesignationSetManager must not bundle NameTypes in workingset: Andreas Kohlbecker
04:27 PM bug #7247 (Resolved): TypeDesignationSetManager must not bundle NameTypes in workingset: Applied in changeset commit:cdm-vaadin|843f448b234e1e763faf4d9b8485da2e3a4db45d. Andreas Kohlbecker
05:08 PM task #6839: remove old workbench.xmi from .cdmlibrary: There where glitches with the views that where restored from previous executions of the Taxeditor. Deleting the work... Andreas Kohlbecker
04:48 PM task #6839 (Feedback): remove old workbench.xmi from .cdmlibrary: I do not remember why we created this ticket. Is it really that important to remove the file because it is completely... Patrick Plitzner
04:44 PM bug #6551 (Worksforme): Invalid parts: This does not happen anymore Patrick Plitzner
03:10 PM feature request #7076 (Resolved): Add Nebula CompositeTable as direct dependency: tested latest change with nightly and p2 update. Everything seems to work. Patrick Plitzner
03:09 PM bug #7064: NameEditor remaining issues: after drag & drop of a synonym the old homotypical group is not correctly updated, see attached files Katja Luther
02:27 PM feature request #7234: Make areas in TaxEditor distribution editor sortable: in the vaadin distribution editor only namedAreas of one vocabulary can be choosen, should it be the same in the taxE... Katja Luther
01:43 PM bug #6075 (Resolved): harmonize ' Enable auto-suggest' option with existing code: Applied in changeset commit:cdm-dataportal|023c4a03b112854eef6b2f8de74711e5217c39d6. Patrick Plitzner
10:35 AM feature request #6762 (Closed): Implement Character Editor: With the implementation of the WS editor and the character matrix this has been tested enough to close this ticket. N... Patrick Plitzner
10:29 AM feature request #7086 (Closed): Implement WorkingSet Editor: Closing this because the WS editor has been released. Patrick Plitzner
10:29 AM feature request #7095 (Closed): Implement Character Matrix: Closing this ticket because the character matrix has been released Patrick Plitzner
10:27 AM feature request #6538: Add perspectives for working character data/matrix: Fixed with commit:taxeditor|e1cddd4602b04fc07fd9a49aef61a9d84b778b62 Patrick Plitzner
10:25 AM feature request #6538 (Closed): Add perspectives for working character data/matrix: Patrick Plitzner
10:24 AM feature request #7196 (Closed): Check existing data when adding specimens to CharacterMatrix: Patrick Plitzner
10:19 AM feature request #6618 (Closed): Add link to Structure, Property, Method(?) and Type(?): this has been implemented Patrick Plitzner
10:17 AM feature request #6529 (Closed): Extend WorkingSet to allow a more fine grained definiton of taxon set: this is fixed. WorkingSets do not have to be IdentifiableEntities because we now use the working set navigator and no... Patrick Plitzner

02/06/2018

03:48 PM bug #7250: add null checks to TeamDefaultCacheStrategy: Andreas Müller, please review the code changes are correct. I was a bit unclear about the role of paramter `i` in `c... Andreas Kohlbecker
03:46 PM bug #7250 (Resolved): add null checks to TeamDefaultCacheStrategy: Applied in changeset commit:cdmlib|02f58c709c8e2ea7cd2bc2a8e0fd529a80be54c2. Andreas Kohlbecker
03:44 PM bug #7250 (Closed): add null checks to TeamDefaultCacheStrategy: team members are not being null-checked.
In UIs members can be null at a point in the application life cycle when ... Andreas Kohlbecker
03:17 PM bug #7249 (Closed): NameTypeDesignationEditor delete not working: even after the changes applied in commit:cdm-vaadin|3b66edef delete is not working
Andreas Kohlbecker
02:54 PM task #7248 (New): Remove extra transaction in CdmStore.deleteBean(T bean, AbstractView view): transactions wrapped around CdmStore.deleteBean(T bean, AbstractView view) are a leftover of the views running in a c... Andreas Kohlbecker
02:24 PM bug #7247 (Closed): TypeDesignationSetManager must not bundle NameTypes in workingset: When two NameTypeDesignations for with the same typeName are related to a registration the TypeDesignationSetManager ... Andreas Kohlbecker
02:07 PM bug #7246 (Closed): ToOneRelatedEntityReloader.valueChange() not triggered after editing bean chosen in ToOneRelatedEntityCombobox or ToManyRelatedEntitiesComboboxSelect: **ToManyRelatedEntitiesComboboxSelect example**
1. Open Name Popupeditor of name having a basionym
2. click the... Andreas Kohlbecker
01:49 PM bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree: This seems to be a problem when the setSecundumForSubtree method was called with the same reference before. Katja Luther
09:06 AM bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree: now this problem also appears whithout the progress monitor.
Hallo,
habe versucht, für die ganzen Apocynaceae in ... Katja Luther
09:00 AM bug #7245 (Closed): validation of ToOneRelatedEntityCombobox not working: ToOneRelatedEntityCombobox set to required are not validated when the editor is comitted.
validation is only trigg... Andreas Kohlbecker

02/05/2018

02:34 PM feature request #7244 (Resolved): DistributionStatus editor help: Add help button to the DistributionStatus editor with content like:
~~~
1. Nach dem Einloggen erscheint der ... Andreas Kohlbecker
01:03 PM bug #7243 (Duplicate): sometimes the context menu in name editor does not work anymore: sometimes the right click menu of the names in name editor does not show up anymore.
Katja Luther
12:59 PM feature request #7234 (In Progress): Make areas in TaxEditor distribution editor sortable: Katja Luther
12:59 PM feature request #7234: Make areas in TaxEditor distribution editor sortable: we should use the same comparator. therefore we need to move the AlphabeticallyAscendingNamedAreaComparator to cdmlib Katja Luther
12:32 PM bug #7237 (Resolved): Status are not deletable in TaxEditor distribution status: Applied in changeset commit:taxeditor|7a1050358100c7de9e619f7da9812261fac18e83. Katja Luther
10:58 AM bug #5371: all name parts of taxa with flag doubtful = true are displayed in italic: Hallo,

das Anhaken von Taxonnamen im Editor als "Taxon is doubtful" oder "synonym is doubtful", das im Portal ein... Andreas Kohlbecker

02/02/2018

03:35 PM bug #7096: Add second symbol attribute to DefinedTermBase: 2056 naturalised was mistakenly created Andreas Müller
12:27 PM bug #7096: Add second symbol attribute to DefinedTermBase: |id|titleCache|idInVocabulary|symbol|n|vocabulary_id|
|---|---|---|---|---|---|
|2065|endemic|e|●|2975|30|
|2062|n... Andreas Müller
03:34 PM bug #7105: potential dangerous use of factory.openSession(): Strange, I can't change priority in this ticket. AK, can you change it to highest? Andreas Müller
03:28 PM bug #7241: Missing rights are not correctly indicated in Vaadin distribution editor - flexible vaadin errorhandler is needed: vaddin allows setting an `com.vaadin.server.ErrorHandler` for UIs and components. The caveat with this builtin apprao... Andreas Kohlbecker
02:58 PM bug #7241 (Closed): Missing rights are not correctly indicated in Vaadin distribution editor - flexible vaadin errorhandler is needed: If a user has not enough rights to edit a distribution in the Vaadin Distribution Editor this is only indicated by an... Andreas Müller
03:05 PM bug #7242 (New): Distribution status not correctly shown in Taxon Details of Distribution Editor for Cuba: In the cuba database the distribution status is shown only for the last entry in the taxon details view in Vaadin dis... Andreas Müller
01:13 PM bug #7240 (Closed): Rename last name by family name and first name by "Other/given names": Andreas Kohlbecker
01:13 PM bug #7240 (Resolved): Rename last name by family name and first name by "Other/given names": Applied in changeset commit:cdm-vaadin|d8e0a88ca85b40cca38d75cd6ebdf290a5d07641. Andreas Kohlbecker
11:40 AM bug #7240 (Closed): Rename last name by family name and first name by "Other/given names": in PersonsField. Andreas Kohlbecker
10:46 AM bug #7239 (Closed): Rename last name by family name and first name by "Other/given names": in Taxeditor.
Also move family name up and Other/given names down. Andreas Müller
10:27 AM task #7238 (Closed): Rename lastName and firstName: According to https://www.w3.org/International/questions/qa-personal-names.en#fielddesign last name should better be c... Andreas Müller

02/01/2018

11:32 PM bug #7237 (Closed): Status are not deletable in TaxEditor distribution status: It is currently not possible to remove a status from an area completely via TaxEditor distribution editor.
There s... Andreas Müller
11:21 PM bug #7236 (Closed): Make available distribution status a database preference for TaxEditor distribution editor: Similar to same functionality in vaadin editor (#7028).
Vaadin example given for cuba. Andreas Müller
11:14 PM feature request #7235 (Closed): Make available area vocabularies a database preference for TaxEditor distribution editor: See also similar implementation for Vaadin distribution editor (part of #6903).
Vaadin example exists for cuba.
... Andreas Müller
09:52 PM feature request #7234 (Closed): Make areas in TaxEditor distribution editor sortable: Current sort order is only alphabetically. We also need an vocabulary based sort order (order by order in vocabularie... Andreas Müller
09:39 PM bug #6326 (Worksforme): Login from taxeditor not possible after logging out of vaadin distribution editor: I can't reproduce this anymore. I tested on cuba production. Probably it is fixed with the above commit or with the g... Andreas Müller
03:53 PM bug #7233 (Worksforme): LIE during processing of webservice request to /portal/taxon/{uuid}/taxonNodes: The call http://api.cybertaxonomy.org/flora-malesiana/portal/taxon/02db28ed-58ee-4c42-af0e-b8e05e69ee0b/taxonNodes
... Andreas Kohlbecker
03:45 PM bug #7096: Add second symbol attribute to DefinedTermBase: After doing so revert idInVocabulary in Cuba Database
NOT complete !!!
~~~
REPLACE INTO `DefinedTermBase` (`id... Andreas Müller
03:36 PM bug #6811 (Closed): View and according Presenter are initialized 3x: Andreas Kohlbecker
03:25 PM bug #6811 (Worksforme): View and according Presenter are initialized 3x: most probably fixed by #7231 Andreas Kohlbecker
03:31 PM bug #6562 (Closed): vaadin mvp framwork presenters without view: can no longer reproduce, this is most probably fixed by #7231 Andreas Kohlbecker
03:26 PM bug #7231 (Closed): replace the SpringApplicationBus by Vaadin4Spring Event Bus in scoped contexts: Andreas Kohlbecker
02:56 PM bug #7231 (Resolved): replace the SpringApplicationBus by Vaadin4Spring Event Bus in scoped contexts: Applied in changeset commit:cdm-vaadin|be4a97890b3a6e3e67b4be334dcc7d4ead99fd35. Andreas Kohlbecker
07:50 AM bug #7231 (Closed): replace the SpringApplicationBus by Vaadin4Spring Event Bus in scoped contexts: The SpringApplicationBus causes a couple probelms where it is being used in scoped spring contexts (see related ticke... Andreas Kohlbecker
03:11 PM bug #7229 (Closed): obsolte code in AbstractEditorPresenter.onEditorDeleteEvent?: Andreas Kohlbecker
03:04 PM feature request #7232 (New): send events from view to presenter direcly: events from view which are dedicated to the according presenter are sent via the viewEventBus.
This a bad idea when ... Andreas Kohlbecker

01/31/2018

03:06 PM bug #7209: use git repos instead of svn in all pom.xml: I replaced all occurrences in cdmlib poms by copies taken from cdmlib-cache. However, I am not sure if it is correct ... Andreas Müller
02:53 PM bug #7209 (Resolved): use git repos instead of svn in all pom.xml: Applied in changeset commit:cdmlib|fd5ffb2d759b962f88558924f3c25ed6f40e190a. Andreas Müller
02:42 PM bug #7209 (In Progress): use git repos instead of svn in all pom.xml: Andreas Müller
01:35 PM feature request #6871: TaxonNameEditor modes for basionym, replaced synonym and validation: partially solved, copy remaining tasks to follow up ticket Andreas Kohlbecker
01:33 PM bug #7151 (Rejected): entities held in CdmCache can not be modified: no longer valid since we switched to another cache implementation, see #7206 Andreas Kohlbecker
01:28 PM bug #7197 (Resolved): system-admin autheticated through RunAsAuthenticator can stay authenticated after RuntimeException: most probably fixed but needs manual testing Andreas Kohlbecker
01:27 PM bug #7206 (Closed): CdmEntityCache not correctly updating with entitiy graphs loaded afterwards: CdmEntityCache has been completely replaced by CdmTransientEntityCacher Andreas Kohlbecker
01:05 PM bug #7176 (Resolved): published=false for Taxon where the according TaxonName is associated with an unpublished Registration: review if complete Andreas Kohlbecker
01:00 PM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty: is this still an open issue? Andreas Müller
12:56 PM bug #7117 (Closed): Some bugs in Misapplied Name View after e4 migration: copied open issue to new ticket #7230 Andreas Müller
12:54 PM bug #7230 (Closed): Refresh in name editor does not work if using "reuse taxon" in Misapplied Name View (e4): (but details view is refreshed - at least the upper part) Andreas Müller
12:43 PM feature request #7076: Add Nebula CompositeTable as direct dependency: Is this still an open issue? Andreas Müller
12:42 PM bug #7112 (In Progress): Ask for saving dirty editors when closing Taxeditor: Andreas Müller
12:41 PM feature request #7196 (In Progress): Check existing data when adding specimens to CharacterMatrix: Andreas Müller
12:15 PM task #7216 (In Progress): Import pteridophyta for Cuba checklist: Andreas Müller
08:31 AM bug #7229 (Closed): obsolte code in AbstractEditorPresenter.onEditorDeleteEvent?: changing the Flush mode in is most likely obsolete:

~~~java
/**
* Regarding changing the Flush mode see se... Andreas Kohlbecker

01/30/2018

03:04 PM bug #7108 (Feedback): supress unwanted sourcetypes in handle_annotations_and_sources(): Works fine now and ticket can be closed.
I only wonder if only a citation micro reference is given (without citati... Andreas Müller
03:01 PM bug #7108: supress unwanted sourcetypes in handle_annotations_and_sources(): Example for an existing PrimaryMediaSource: http://portal.cybertaxonomy.org/flora-greece/cdm_dataportal/media/d7332d3... Andreas Müller
01:53 PM bug #7080 (Closed): Fix matching for empty time periods: Andreas Müller
01:12 PM feature request #7121 (Feedback): adapt remaining UuidAndTitleCache methods to use filter: Works correctly now. Can you still connect the revert of using uuidAndTitleCache search in AnnotatableService/Dao to ... Andreas Müller
01:04 PM bug #7098 (Feedback): reuse name does not work: It seems to work.
Only question I have is:
In the code the current line 734
~~~
dao.saveOrUpdate(parent);
... Andreas Müller
12:12 PM feature request #7102: Enable EDIT and DELETE for specimen determinations: Andreas Müller wrote:
> Deleting the name should also delete the taxon
This sometimes works immediately but after... Andreas Müller
12:01 PM feature request #7102: Enable EDIT and DELETE for specimen determinations: Deleting the name should also delete the taxon Andreas Müller
11:59 AM feature request #7102: Enable EDIT and DELETE for specimen determinations: EDIT for taxa gives a strange message (see screenshot) Andreas Müller
11:57 AM feature request #7102 (Feedback): Enable EDIT and DELETE for specimen determinations: Delete on taxon gave an NPE
~~~
login : admin
editor version : 4.13.0.201801292346
server : test.e-taxonomy.eu ... Andreas Müller
11:53 AM feature request #7065 (Feedback): When updating a subtree the affected and opened taxa are not updated in name editor this needs to be handled: If there is an accepted taxon and a synonym, the accepted taxon shows the correct value (tested for "publish"). Switc... Andreas Müller
11:33 AM bug #7069 (Feedback): Delete taxon node should have consistent configuration: I removed duplication in German label. Please confirm (1d720e10dd7db8)
Generally it works. 2 further open issues:
... Andreas Müller
10:34 AM bug #7153 (Feedback): Implement possibility to "logout" completely from TaxEditor: Seems to work, but I can't find the place where the credentials are actually stored when "remember login data" is che... Andreas Müller
10:19 AM feature request #7228 (Closed): Add concept and referencing objects view to supplemental view layer stack: Seems to work Andreas Müller

01/29/2018

05:30 PM feature request #6740 (Resolved): Popup Editor for NameTypeDesignation: Applied in changeset commit:cdm-vaadin|51d6bc3c703209cc0af89380800c364d876d6ed2. Andreas Kohlbecker
03:21 PM bug #7227: New name bulk editor shows all menu entries: The problem seems to appear also in other bulk editors (e.g. person/team) and not only after restarting the TaxEditor... Andreas Müller
03:10 PM bug #7227 (Worksforme): New name bulk editor shows all menu entries: When opening the TaxEditor + connect to datasource, then open the name bulk editor and before running a first search ... Andreas Müller
03:18 PM feature request #7228 (Resolved): Add concept and referencing objects view to supplemental view layer stack: Applied in changeset commit:taxeditor|8dfb9731e1f7e14b7f7d997950fa60f6dce44806. Patrick Plitzner
03:17 PM feature request #7228 (Closed): Add concept and referencing objects view to supplemental view layer stack: Patrick Plitzner
02:29 PM bug #7226 (Closed): Name relationship Dialog shows same name: Via the name relationship dialog it is possible to create relationships that have the same from- and to-name. This sh... Andreas Müller

01/27/2018

10:41 PM feature request #7224 (Resolved): PersonField: implement support for 'initials' field: Applied in changeset commit:cdm-vaadin|31a2f09bdfad95a97af3562f10fe69e1e9312d9c. Andreas Kohlbecker
01:47 PM bug #7124: Avoiding multiple repesentation exceptions by removing the conversation from selection dialogs: Is this still an open issue? If yes please move to an open target version. Andreas Müller

01/26/2018

03:34 PM feature request #7225 (New): RegistrationUI checks authenticated user for constant PermissionGroups: the system should check the set of PermissionGroups given to the authenticated user for consistency according to the ... Andreas Kohlbecker
02:04 PM feature request #7224 (Closed): PersonField: implement support for 'initials' field: The Person class has a field for initials. Andreas Kohlbecker
02:02 PM bug #7223 (Closed): ReferenceEditor: disable fields depending on the Reference type: e.g.: hide authorship if type = journal
The Taxonomic Editor behaves the same but the information which field to s... Andreas Kohlbecker
01:28 PM bug #7222 (Closed): Phycobank UI improve labels: ----
![](picture575-1.png)
"Start a new registration process either for a name or typification."
Das hört sich... Andreas Kohlbecker

01/25/2018

10:05 PM bug #7221 (New): Editing the taxon in a taxon interaction not possible, missing detail element: In a taxon interaction clicking on the edit button to edit the already selected taxon opens a dialog but no data is s... Andreas Müller
06:54 PM bug #7220 (Worksforme): Permission Denied in readonly mode of TypeDesignationEditor: open type from http://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!workingset/45
![](picture696-1.pn... Andreas Kohlbecker
06:26 PM feature request #6871 (In Progress): TaxonNameEditor modes for basionym, replaced synonym and validation: Andreas Kohlbecker
05:55 PM bug #7219: CacheLoader.loadRecursive() fails handling proxy objects correctly: please review somebody! Andreas Kohlbecker
05:53 PM bug #7219 (Resolved): CacheLoader.loadRecursive() fails handling proxy objects correctly: Applied in changeset commit:cdmlib|8604cc76ef9d8f3c747f3116b89fa26b750cd562. Andreas Kohlbecker
05:52 PM bug #7219 (Closed): CacheLoader.loadRecursive() fails handling proxy objects correctly: The method
~~~java
CacheLoader.loadRecursive(CdmBase cdmEntity, List<Object> alreadyVisitedEntities, boolean upda... Andreas Kohlbecker
11:32 AM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher: Andreas Kohlbecker wrote:
> Oha, das war mir noch garnicht aufgefallen, danke für diesen Hinweis Katja:
>
> diese... Katja Luther
11:12 AM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher: Oha, das war mir noch garnicht aufgefallen, danke für diesen Hinweis Katja:
diese methode verwendet am ende die `l... Andreas Kohlbecker
11:07 AM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher: Soweit ich den Code richtig interpretiere, gibt es ja zwei Möglichkeiten ein Objekt in den Cache zu laden, entweder... Andreas Kohlbecker
10:46 AM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher: The potential issue regarding the CacheLoaderload() method mentioned above is correct behavior. I guess I was a bit t... Andreas Kohlbecker
11:26 AM feature request #7218 (Closed): SpecimenTypedesignationsWorkingsetEditor: support for Reference system: Reference-System nicht bearbeitbar. Keine hohe Priorität, eventuell später Auswahl mit Voreinstellung WGS 84
Andreas Kohlbecker
11:25 AM feature request #7217 (Closed): SpecimenTypedesignationsWorkingsetEditor: Longitute Latitude fields allow values in degrees minutes seconds formats: there are various degrees minutes seconds formats, it is impossible to support all of them, we thus need to select th... Andreas Kohlbecker
11:17 AM task #7216 (Resolved): Import pteridophyta for Cuba checklist: Andreas Müller
11:12 AM feature request #7158: Add pro parte misapplied name to the concept relationship types: Hi Katja, can you please review, including checking the code changes. Especially the one in the search algorithm is i... Andreas Müller
12:11 AM feature request #7158 (Resolved): Add pro parte misapplied name to the concept relationship types: Applied in changeset commit:cdmlib|e9baa019557b3aa3bd8c858dc60ab136ee8439af. Andreas Müller
09:26 AM feature request #7215 (Closed): Implement pro parte misapplied names in TaxEditor: Pro parte MANs have been implemented in cdmlib (#7158). Now we also need them in TaxEditor.
We need:
Maybe the ... Andreas Müller

01/24/2018

06:17 PM task #7214: discuss unexpected method behaviors in CdmTransientEntityCacher: Can you give more details on the issue to discuss?
Who should be Asignee? Andreas Müller
05:04 PM task #7214 (New): discuss unexpected method behaviors in CdmTransientEntityCacher: ## CdmTransientEntityCacher
~~~java
/**
* Puts the passed ... Andreas Kohlbecker
01:58 PM feature request #7180 (Closed): cdm light export optionally filters by published flag: Katja Luther
01:46 PM feature request #7180: cdm light export optionally filters by published flag: I think we can close this ticket now Andreas Müller
10:38 AM feature request #7180: cdm light export optionally filters by published flag: Andreas Müller wrote:
> I removed the parameter from the configurator but added it to the TaxonNodeFilter which is a... Katja Luther
01:54 PM feature request #7158: Add pro parte misapplied name to the concept relationship types: It was orally discussed that a new relationship type is enough to implement this issue.
Maybe we then also want a ... Andreas Müller
01:35 PM bug #7212: CacheLoader replaces loaded entities with uninitialized proxies: the method signature is not really clear about the behavior of this method
It only de-proxies the passed object `o` ... Andreas Kohlbecker
11:08 AM bug #7212: CacheLoader replaces loaded entities with uninitialized proxies: because of
~~~ java
o = ProxyUtils.deproxy(o);
~~~
I think o should never be a proxy. or am I wrong?? Katja Luther

01/23/2018

02:15 PM bug #7212: CacheLoader replaces loaded entities with uninitialized proxies: wer kennt sich mit dem cache genügend aus um den review zu machen? Andreas Kohlbecker
02:14 PM bug #7212 (Resolved): CacheLoader replaces loaded entities with uninitialized proxies: Applied in changeset commit:cdmlib|9a2bace3a566987c477b1e5150101b3091a1c292. Andreas Kohlbecker
02:10 PM bug #7212 (Resolved): CacheLoader replaces loaded entities with uninitialized proxies: in the following code loaded entities are replaced by uninitialized proxies.
This completely breaks the caching mech... Andreas Kohlbecker
11:15 AM task #7211 (New): Strategy for DwC-A Export of references: References are an extension which links to core (taxa).
However, references may link to multiple taxa (or even other... Andreas Müller
10:59 AM task #5129 (Worksforme): Implement export for remoting: Katja Luther
10:58 AM task #5129: Implement export for remoting: Is this still an open issue? If not, please remove target version and close as Worksforme or Duplicate Andreas Müller
10:45 AM bug #6984: withHeader is not yet working in DwC-A export: please review Andreas Müller
10:43 AM bug #6984 (Resolved): withHeader is not yet working in DwC-A export: Applied in changeset commit:cdmlib|c8e98883485547331b28ced5674c1cb109e8b2b5. Andreas Müller

01/22/2018

02:24 PM feature request #7148: GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan references to GrantedAuthorityImpl in User and Group: Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Kohlbecker wrote:
> >
> > Diese concurrent modification P... Andreas Kohlbecker
10:18 AM feature request #7148: GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan references to GrantedAuthorityImpl in User and Group: Katja Luther wrote:
> Andreas Kohlbecker wrote:
>
> Diese concurrent modification Probleme bekommt man durch das V... Andreas Müller
10:04 AM feature request #7148: GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan references to GrantedAuthorityImpl in User and Group: Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Andreas Kohlbecker wrote:
> > > ich habe eine Lösung gefunde... Katja Luther
10:01 AM feature request #7148: GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan references to GrantedAuthorityImpl in User and Group: Andreas Müller wrote:
> Ja, das hatte ich gesehen, war mir aber nicht sicher, auf welche Stelle des Codes sich das b... Katja Luther

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