Activity

From 12/19/2017 to 01/17/2018

01/17/2018

11:00 PM bug #7155: VersionableEntity.equals() should take updated timestamp into account: There is another possibility to compare instances of a given CdmBase class by using IMatchStrategy (see https://dev.e... Andreas Müller
08:08 AM bug #7155 (Rejected): VersionableEntity.equals() should take updated timestamp into account: Thank you for the additional points that I missed in my comment above.
So we can close this ticket as rejected, bu... Andreas Kohlbecker
10:57 PM feature request #7198 (Rejected): Implement equals() forCategoricalData: For rejecting reasons please refer to https://dev.e-taxonomy.eu/redmine/issues/7199#note-1 Andreas Müller
06:50 PM feature request #7198 (Rejected): Implement equals() forCategoricalData: Compare all StateData Patrick Plitzner
10:56 PM feature request #7199 (Rejected): Implement equals() for QuantitativeData: Equals for ALL CdmBase is defined in CdmBase itself and should not be overriden.
For discussion see also #7155.
I... Andreas Müller
06:50 PM feature request #7199 (Rejected): Implement equals() for QuantitativeData: Compare all StatisticalMeasures Patrick Plitzner
04:40 PM bug #7197 (Closed): system-admin autheticated through RunAsAuthenticator can stay authenticated after RuntimeException: after the following exception
~~~
[phycobank] 16:23:47,184 ERROR [qtp759156157-109][eu.et.cd.va.vi.na.TaxonNamePo... Andreas Kohlbecker
11:19 AM feature request #7196 (Closed): Check existing data when adding specimens to CharacterMatrix: When adding new specimens to the character matrix the following algorithm should run:
1. ~~check if there is a spe... Patrick Plitzner
08:35 AM feature request #7195 (In Progress): RegistrationWorkingsetEditor creates blocking relations for new basionym names: Andreas Kohlbecker
08:35 AM feature request #7195 (Closed): RegistrationWorkingsetEditor creates blocking relations for new basionym names: Andreas Kohlbecker
08:20 AM bug #7194 (Closed): NoSuchElementException in LazyComboBox used in ToOneRelatedEntityCombobox: Andreas Kohlbecker
08:20 AM bug #7194 (Resolved): NoSuchElementException in LazyComboBox used in ToOneRelatedEntityCombobox: Applied in changeset commit:cdm-vaadin|2fbc5869df438292e3679d162a0f81d3234e57ad. Andreas Kohlbecker

01/16/2018

04:58 PM bug #7194 (In Progress): NoSuchElementException in LazyComboBox used in ToOneRelatedEntityCombobox: in the viritin issue tracker a related ticket can be found https://github.com/viritin/viritin/issues/273
where a pro... Andreas Kohlbecker
04:51 PM bug #7194 (Closed): NoSuchElementException in LazyComboBox used in ToOneRelatedEntityCombobox: frequently a `NoSuchElementException` is thrown when scrolling to next pages in the combobox
~~~
SEVERE:
java.... Andreas Kohlbecker
04:42 PM feature request #6800: Allow all filters for DwCA export in TaxEditor: I created a new ticket for new available filter parameters #7193 Andreas Müller
04:34 PM feature request #6800 (Feedback): Allow all filters for DwCA export in TaxEditor: Andreas Müller
04:34 PM feature request #6800: Allow all filters for DwCA export in TaxEditor: Subtree filter and taxon filter still not seem to be available in nightly. See screenshot. Andreas Müller
04:40 PM feature request #7193 (New): Implement area filter and rank filter in TaxEditor for exports: Since #7165 and #7166 TaxonNodeFilter supports filtering by areas and filtering by min and max rank. This should be i... Andreas Müller
04:26 PM feature request #7180 (Feedback): cdm light export optionally filters by published flag: I removed the parameter from the configurator but added it to the TaxonNodeFilter which is also part of the configura... Andreas Müller
02:42 PM feature request #7180 (Resolved): cdm light export optionally filters by published flag: Applied in changeset commit:cdmlib|8f006e1e7dd176b5249aee378757f573fb22f887. Andreas Müller
09:50 AM feature request #7180: cdm light export optionally filters by published flag: Andreas Müller wrote:
> The publish flag evaluation should be part of the TaxonNodeFilter filtering mechanism in Tax... Katja Luther
04:25 PM bug #7191: Taxon details view gets blank when starting to type in name.extensions: Ooops, sorry! Andreas Kohlbecker
04:06 PM bug #7191 (Worksforme): Taxon details view gets blank when starting to type in name.extensions: This is fixed for long time. Please use uptodate TaxEditor version. You are using 4.10.0 according to the image, not ... Andreas Müller
02:16 PM bug #7191 (Worksforme): Taxon details view gets blank when starting to type in name.extensions: When starting to type into the extensions field of the **Name.extensions** the details view gets blank, see sreenshow... Andreas Kohlbecker
04:21 PM bug #7188 (Closed): namedArea selection dialog needs too long to set the selected area: for me this works fine now (tested to add Germany as a country for a field unit, very fast).
Norbert, Thilo, could... Andreas Müller
01:01 PM bug #7188 (Resolved): namedArea selection dialog needs too long to set the selected area: Katja Luther
01:00 PM bug #7188 (Closed): namedArea selection dialog needs too long to set the selected area: after selecting an area, it takes too long to add it to the description element. Katja Luther
04:14 PM bug #7155: VersionableEntity.equals() should take updated timestamp into account: According to our telco we will not implement it as described in the title. As far as I remember we agreed that hibern... Andreas Müller
04:00 PM bug #7155 (Feedback): VersionableEntity.equals() should take updated timestamp into account: Hi Andreas, what shall we do with this issue? It is a topic for further discussion, therefore I think we should move ... Andreas Kohlbecker
04:05 PM bug #7175 (Closed): DwC-A export optionally filters by published flag: confirming that this is fixed Andreas Kohlbecker
03:41 PM bug #7175: DwC-A export optionally filters by published flag: This is implemented now and a test was added.
Please review. Andreas Müller
02:42 PM bug #7175: DwC-A export optionally filters by published flag: Applied in changeset commit:cdmlib|8f006e1e7dd176b5249aee378757f573fb22f887. Andreas Müller
04:05 PM bug #7161 (Closed): DwC-A meta.xml file csv file references invalid: confirming that this is fixed Andreas Kohlbecker
03:24 PM task #7192 (Feedback): DwC-A of phycobank names for GBIF: Andreas Kohlbecker
02:56 PM task #7192: DwC-A of phycobank names for GBIF: The export looks ok, but produces the following warnings on data problems
~~~
Warnings:
=========
No rank avail... Andreas Kohlbecker
02:45 PM task #7192 (Feedback): DwC-A of phycobank names for GBIF: The below request URI triggers the export with following settings:
* doMisapplieds=false
* **doSynonyms=true**
... Andreas Kohlbecker
03:22 PM feature request #6724 (Closed): Popup Editor for SpecimenTypeDesignation Workingsets: Andreas Kohlbecker
02:13 PM feature request #7165: Extend TaxonNodeFilter with rank filtering: I slightly refactored everything and added some tests. Please review my changes and close if ok. Andreas Müller
02:09 PM feature request #7190 (New): TaxonNodeFilter should support aggregated area filter: AM:
Aggregation auf höhere Ebene: Das ist ein schwieriges Thema. Für z.B. Gattungen sind die Distributions ja nich... Andreas Müller
02:07 PM bug #7189 (Closed): Taxeditor connect dialog high-dpi suport: With increased dpi for the system fonts as it is needed for high dpi displays the connect elementd do overlap:
![]... Andreas Kohlbecker
02:07 PM feature request #7166: Implement area filter for TaxonNodeFilter: Added some tests and did some refactoring. Also removed distributions with status absent from results.
Please review... Andreas Müller
01:30 PM bug #7111 (Resolved): synchronize button does not work as expected: Applied in changeset commit:taxeditor|eb15e6dbb88d75bcdb1f98ce3dedace4171cadcc. Katja Luther
01:28 PM bug #7111: synchronize button does not work as expected: now the sync button is snychronized with the value of the attribute linkWithTaxon Katja Luther
12:19 PM bug #7176: published=false for Taxon where the according TaxonName is associated with an unpublished Registration: after a discussion with henning we came to the conclusion that the Registration.status being set to PUBLISHED must be... Andreas Kohlbecker
12:12 PM bug #7179 (Closed): Phycobank: set protectedTitleCaches = 1 where Person contains no data: applied to the production database Andreas Kohlbecker
09:34 AM bug #7162 (Rejected): TaxonNamePopupEditor: Adding BasionymAuthor causes PermissionDeniedException: since #7170 the BasionymAuthorsField and the Basionym itself are no longer visible at the same time, so this issue wi... Andreas Kohlbecker
09:31 AM bug #6276: Nomenclatural references show parsed date string instead of publication year: i am moving this issue to the current release milestone so that it is not getting lost
Andreas Kohlbecker
09:27 AM bug #7154 (Closed): CdmEntityCache can update cached entities: Andreas Kohlbecker

01/09/2018

04:31 PM bug #7161 (Closed): DwC-A meta.xml file csv file references invalid: exported DwC-A contains a meta.xml which references the csv file as `*.txt` files whereas the csv file are having a ... Andreas Kohlbecker
03:53 PM bug #7160 (Closed): DwC-A meta.xml file has wrong file extension: exported DwC-A contains a meta.xml file having the file extension `.csv`:
meta.xml.csv
Validating the archive ... Andreas Kohlbecker
02:46 PM bug #7153 (In Progress): Implement possibility to "logout" completely from TaxEditor: Now there is a workaround available:
when deselect the "remember me" button, the login information is deleted fro... Katja Luther
12:49 PM feature request #7159: Make formatting of authors configurable per instance: NK: Zu erwähnen wäre noch, dass weitere Stilmerkmale das Vorhandensein oder nicht von Leerzeichen (a) zwischen Vornam... Andreas Müller
11:00 AM feature request #7159: Make formatting of authors configurable per instance: NK:
ja, Euro+Med und Cichorieae folgen nicht dem IPNI-Standard (deshlab führt das, so wie es jetzt ist zu Uneinhei... Andreas Müller
10:58 AM feature request #7159 (New): Make formatting of authors configurable per instance: Formatting of author names is not defined in terms of spaces between firstname abbreviation and lastname.
The taxon ... Andreas Müller
10:29 AM feature request #7158: Add pro parte misapplied name to the concept relationship types: WGB:
mein Vorschlag der p.p. Flag für misapplications bezog sich auf die kurzfristige Lösung, also nicht auf Konz... Andreas Müller

01/08/2018

08:23 PM feature request #7158 (Feedback): Add pro parte misapplied name to the concept relationship types: WGB: >>Außerdem habe ich entdeckt, dass das eine p.p. „Synonym“ in Wirklichkeit als Misapplication genannt wird – kan... Andreas Müller
04:30 PM bug #7154 (Resolved): CdmEntityCache can update cached entities: Applied in changeset commit:cdm-vaadin|2b9b03a1fae11f68da8d2803b8b75b10b0c524d9. Andreas Kohlbecker
02:40 PM bug #7155: VersionableEntity.equals() should take updated timestamp into account: Hi Andreas,
I posted this provoking code as a suggestion and as an entry into the discussion. I never would have c... Andreas Kohlbecker
02:03 PM bug #7155: VersionableEntity.equals() should take updated timestamp into account: Andreas Kohlbecker wrote:
> I changed the method to
>
> ~~~java
>
> /**
> * Is true if UUID created and upd... Andreas Müller
01:50 PM bug #7155: VersionableEntity.equals() should take updated timestamp into account: I do not agree with this solution. The up to now implementation is essential for almost everything we have done until... Andreas Müller
11:24 AM bug #7155 (In Progress): VersionableEntity.equals() should take updated timestamp into account: I changed the method to
~~~java
/**
* Is true if UUID created and updated timestamp are the same for the pas... Andreas Kohlbecker
08:50 AM bug #7155 (Closed): VersionableEntity.equals() should take updated timestamp into account: The `equals()` as implemented in `VersionableEntity` is just a copy of the `equals` in `CdmBase`. It does not impleme... Andreas Kohlbecker
01:23 PM feature request #7063 (In Progress): Improve the area selection wizard for distribution editor: for better usabilty the terms are sorted now Katja Luther
11:03 AM feature request #6485: Implement IntextReferences in TaxEditor: open issues:
- deleting or editing text of inline reference
- editing the text around the inline reference
Katja Luther
11:00 AM feature request #7157 (Rejected): interim solution to mark pro parte synonyms in the dataportal: in case the `proParte` flag of a taxon is set :
"'p.p.' ... einfach hinten an das pp-Synonym dranhängen mit Space ... Andreas Kohlbecker
10:41 AM bug #7156: After deleting factual data all save operations result in DataIntegrityViolationException: The exception appears but the save is successfull. Katja Luther
10:38 AM bug #7156 (Worksforme): After deleting factual data all save operations result in DataIntegrityViolationException: After deleting factual data (the delete was successfull) and adding new factual data and save results in:
~~~
j... Katja Luther
10:32 AM bug #7073 (Closed): add extension to a name does not result in a dirty state: Katja Luther
10:31 AM bug #6627: Remaining cdm light issues: the isProParte flag is added to the synonym table Katja Luther

01/05/2018

02:23 PM bug #7094: Remove empty spaces in nomencl. title of persons: Finally this change was reverted and is only an optional configuration since 4.13 Andreas Müller

01/04/2018

03:24 PM bug #7154 (Closed): CdmEntityCache can update cached entities: The CdmEntityCache implemented with commit:cdm-vaadin|02ec8d6 & commit:cdm-vaadin|5e97d77 is used in the `ToOneRelate... Andreas Kohlbecker
02:57 PM bug #7153 (Closed): Implement possibility to "logout" completely from TaxEditor: ... probably this means that the TaxEditor should be forced to forget the password.
The problem is, that uncheck... Andreas Müller
02:44 PM feature request #7152 (New): Make LSID another Alternative Identifier: Currently we handle LSIDs as part of identifiable entities. We may want to handle them as ordinary identifiers, such ... Andreas Müller
11:55 AM feature request #7120 (Closed): implement new buttons for selection dialogs: new buttons are now a little moved to the left. Close this ticket Katja Luther
11:53 AM feature request #7120 (Resolved): implement new buttons for selection dialogs: Applied in changeset commit:taxeditor|7eaf97410b02d0d4c50a26aa79a0b41a4a779edc. Katja Luther
10:28 AM feature request #7121 (Resolved): adapt remaining UuidAndTitleCache methods to use filter: when in voc selection dialog is chosen, the ok button is disabled now Katja Luther

12/22/2017

04:16 PM feature request #7149 (Closed): Collection Editor implemented: complete, only the institute is not editable but this requires another editor. Andreas Kohlbecker
12:38 PM feature request #7149 (Resolved): Collection Editor implemented: Applied in changeset commit:cdm-vaadin|b36e8dd1e6810eb9972eb7a2d0e90e205146cf9c. Andreas Kohlbecker
04:14 PM feature request #7150 (Closed): GrantedAuthorities & PermissionVoter for Cdm Collection type: Andreas Kohlbecker
04:07 PM feature request #7150 (Resolved): GrantedAuthorities & PermissionVoter for Cdm Collection type: Applied in changeset commit:cdm-vaadin|72141255300f274a193cc84bca8eca764e2c5816. Andreas Kohlbecker
11:00 AM feature request #7150 (Closed): GrantedAuthorities & PermissionVoter for Cdm Collection type: **TODO:**
* Implement PermissionVoter
* Add COLLECTION to CdmPermissionClass
* The Authority `COLLECTION[CRE... Andreas Kohlbecker
12:25 PM bug #7151 (Rejected): entities held in CdmCache can not be modified: Example-`SpecimenTypeDesignationWorkingsetPopupEditor`: Editing a Collection already associated with a Specimen via t... Andreas Kohlbecker

12/21/2017

03:23 PM feature request #7149 (Closed): Collection Editor implemented: Andreas Kohlbecker
03:02 PM feature request #6796 (Closed): PersonField: add UI Element to choose from existing Persons: Andreas Kohlbecker
02:07 PM feature request #7148: GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan references to GrantedAuthorityImpl in User and Group: Hallo Andreas und Katja,

ich versuche per hql GrantedAuthorityImpls und die zugehörigen Relationen von User und G... Andreas Kohlbecker
02:05 PM feature request #7148 (Closed): GrantedAuthorityRevokingRegistrationUpdateLister: delete orphan references to GrantedAuthorityImpl in User and Group: The GrantedAuthorityRevokingRegistrationUpdateLister deletes GrantedAuthorityImpl entities but the references to Gran... Andreas Kohlbecker
10:52 AM bug #7147 (New): GrantedAuthorityRevokingDeleteListener implemented: Once a cdm entitiy is deleted the per entity GrantedAuthoritys which have been created for this specific entity must ... Andreas Kohlbecker
10:18 AM bug #7146 (Closed): ClassCastException when clicking on synchronize button: seems good Patrick Plitzner
08:20 AM bug #7146 (Resolved): ClassCastException when clicking on synchronize button: can not reproduce the exception, normally it should not happen, because the canExecute check for the right Class, but... Katja Luther
08:13 AM bug #7146 (Closed): ClassCastException when clicking on synchronize button: I just clicked on l"link with taxon" option and received this error
no taxon was selected or searched
logi... Katja Luther
08:08 AM bug #7145: NPE when trying to move a synonym into another homotypic group: I can not reproduce this error, but keep it if it appears again. Katja Luther
07:59 AM bug #7145 (New): NPE when trying to move a synonym into another homotypic group: NPE when trying to move a synonym into another homotypic group
~~~
login : m.malekmohammadi
editor version : 4.1... Katja Luther

12/19/2017

03:44 PM feature request #7119: implement filter button for selection dialogs: Andreas Müller wrote:
> There is an issue if NO vocabulary is chosen in area search filter. See also https://dev.e-t... Katja Luther
03:18 PM feature request #7119: implement filter button for selection dialogs: Andreas Müller wrote:
> Cancel does not yet work in filter dialog. It works like ok instead.
this is fixed Katja Luther
03:17 PM feature request #7119: implement filter button for selection dialogs: Andreas Müller wrote:
> The filter for areas does not yet correctly remember if "Country" is disabled. Next time whe... Katja Luther
03:17 PM feature request #7119: implement filter button for selection dialogs: Andreas Müller wrote:
> If the search string is still empty, after setting the filter ALL areas are loaded. This is ... Katja Luther
02:39 PM feature request #7119: implement filter button for selection dialogs: There is an issue if NO vocabulary is chosen in area search filter. See also https://dev.e-taxonomy.eu/redmine/issues... Andreas Müller
01:32 PM feature request #7119: implement filter button for selection dialogs: The filter dialog is still missing a title Andreas Müller
01:31 PM feature request #7119: implement filter button for selection dialogs: Cancel does not yet work in filter dialog. It works like ok instead. Andreas Müller
01:29 PM feature request #7119: implement filter button for selection dialogs: If the search string is still empty, after setting the filter ALL areas are loaded. This is unexpected behavior and s... Andreas Müller
01:27 PM feature request #7119 (Feedback): implement filter button for selection dialogs: The filter for areas does not yet correctly remember if "Country" is disabled. Next time when the filter is opened "C... Andreas Müller
02:55 PM bug #6955 (Feedback): NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading: In case no level exists, it looks like the label includes the class name instead. In case of pure NamedAreas this doe... Andreas Müller
02:53 PM bug #7144 (Closed): Add country as level to all areas of type Country.: Needs update script. Also need to adapt term loader. Andreas Müller
02:40 PM feature request #7118 (Feedback): migrate selection dialogs: Andreas Müller
02:33 PM feature request #7118: migrate selection dialogs: Some minor open issues:
* the search field should start at the same vertical position as the result box.
* the fi... Andreas Müller
02:35 PM feature request #7121: adapt remaining UuidAndTitleCache methods to use filter: When choosing NO vocabulary in area search I get an exception:
~~~
login : admin
editor version : 4.13.0.2017121... Andreas Müller
02:27 PM feature request #7121 (Feedback): adapt remaining UuidAndTitleCache methods to use filter: Andreas Müller
02:27 PM feature request #7121: adapt remaining UuidAndTitleCache methods to use filter: Moving getUuidAndTitleCache (xxx) down to AnnotatableEntityService+Dao to me seems critical.
Annotatable entities ... Andreas Müller
01:22 PM bug #7143 (Closed): Finish not enabled when unprotecting titleCache in new Person dialog: Using the new person dialog, at the beginning the title cache is protected. Therefore entering data e.g. into "family... Andreas Müller
01:16 PM feature request #7120 (Feedback): implement new buttons for selection dialogs: Only open issue from email discussions that I remember is that in terms of 2 "New" buttons it would be nice to have m... Andreas Müller
01:00 PM feature request #7142 (New): Implement person and team filter for agent search dialog: For authors (and maybe others) it is allowed to search for persons or teams in search dialog. We may want to implemen... Andreas Müller
12:56 PM bug #7122 (Closed): titlecache of the taxon is not updated when swap accepted taxon and synonym: Seems to be fixed. Andreas Müller
12:51 PM bug #7141 (Worksforme): Navigator does not update after swap synonym and accepted: When swaping a synonym and an accepted taxon, the label of the accepted taxon in the navigator is not synchronized. Andreas Müller
12:38 PM bug #7123 (Closed): Multiple Represenation Exception in Derivate View and bulk editor: As far as I remember I checked this after email conversation about the ticket. Finally everything was ok so we can cl... Andreas Müller
11:58 AM bug #7125 (Closed): widgetIsDisposed exceptions when clicking in another part: To be honest I do not know how to test this. Generally widget is disposed exceptions appear only rarely in the meanwh... Andreas Müller
11:48 AM bug #7073 (Feedback): add extension to a name does not result in a dirty state: Katja Luther wrote:
> I added another check for disposed control, hopefully this catches the exception. I could not ... Andreas Müller
11:33 AM bug #6728 (Closed): Changing author data when editing a reference does neither update the reference titleCache nor the author label: The above issue works fine. I havn't checked all other places (too many), but I think for now we can close this ticket. Andreas Müller
10:53 AM bug #7069 (Resolved): Delete taxon node should have consistent configuration: Applied in changeset commit:taxeditor|c4f68783f7732707b2741520c9b1b606ccb89b05. Katja Luther
10:37 AM bug #7069 (Feedback): Delete taxon node should have consistent configuration: Generally this is solved. Some minor issues:
1. Deleting a leaf: German label is "Wollen sie die ausgewählten Kno... Andreas Müller

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