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From 11/02/2017 to 12/01/2017

12/01/2017

04:47 PM feature request #7102 (Resolved): Enable EDIT and DELETE for specimen determinations
Applied in changeset commit:taxeditor|0594533897ccd7e0709aeff830424f5ec29479c5. Patrick Plitzner
04:07 PM feature request #7102 (Closed): Enable EDIT and DELETE for specimen determinations
Patrick Plitzner
04:11 PM bug #7103 (Closed): verify, fix, improve SpecimenTypeDesignationWorkingSetServiceImpl delete functions
`SpecimenTypeDesignationWorkingSetServiceImpl` implements the delete operation for `SpecimenTypeDesignationWorkingSe... Andreas Kohlbecker
03:15 PM bug #7101 (In Progress): StatusPresenterTest broken
in the cdm-vaadin project some tests in StatusPresenterTest are broken. This happened when switched from the file bas... Andreas Kohlbecker

11/30/2017

05:09 PM feature request #7090 (Duplicate): Implement matrix editor
Duplicates #7095 Patrick Plitzner
03:37 PM task #7100 (New): Split CdmAuthority into operations and filters
Currently CdmAuthorities included operation evalution information (operation attribute) and filter information (permi... Andreas Müller
03:03 PM feature request #3133 (Closed): security: preparation and first steps for Role, CdmAuthority and GrantedAuthorityImpl implement GrantedAuthority
all requirements defined in this issue are now covered by #7099, so we can close this ticked Andreas Kohlbecker
12:39 PM feature request #3133: security: preparation and first steps for Role, CdmAuthority and GrantedAuthorityImpl implement GrantedAuthority
Are there still open issues? Andreas Müller
12:35 PM task #7099 (Closed): Make CdmAuthority a persistable class
We need a persistable Authority base class which will then be extended by classes Role and CdmAuthority. It will repl... Andreas Müller
11:14 AM task #2494: replace garland_cichorieae_cdm_taxon_list_thumbnails by settings
This is also important for the flora of cyprus Andreas Kohlbecker

11/29/2017

01:31 PM bug #7098 (Closed): reuse name does not work
Hallo,
leider kann ich auch nach Neustart und diversen Tricks und Versuchen den vorhandenen Namen
Trigastrothe...
Katja Luther

11/28/2017

11:18 AM feature request #7097 (Resolved): Internationalization for distribution editor
Add internationalization for all vaadin apps Fabian Reimeier

11/27/2017

02:15 PM bug #7096 (In Progress): Add second symbol attribute to DefinedTermBase
Andreas Müller
02:13 PM bug #7096 (Resolved): Add second symbol attribute to DefinedTermBase
In Cuba checklist we need 1 symbol for the short representations string, another one for the representation in the di... Andreas Müller
11:47 AM feature request #7095 (Closed): Implement Character Matrix
Patrick Plitzner

11/24/2017

05:36 PM bug #7094 (Resolved): Remove empty spaces in nomencl. title of persons
Applied in changeset commit:cdmlib|69930674b18617ca2ba2988a1abf3e283c3284ba. Andreas Müller
05:19 PM bug #7094 (Closed): Remove empty spaces in nomencl. title of persons
Andreas Müller
04:48 PM bug #7093 (Worksforme): choosing representation which best fits the available size for taxon profile picture not working in all cases
even fixed in #6969 choosing representation which best fits the available size for taxon profile picture not working... Andreas Kohlbecker
04:08 PM bug #7092 (Resolved): Adapt dates in Nicks images after mediaCreated became TimePeriod
In Flora of Greece.
Correct dates to be found in 20171110_Turland_433_others_59.xlsx
Andreas Müller
03:20 PM bug #7091 (Closed): Add uri field and abbreviatedText to Righs in supplemental data
The current implementation only allows setting of Rights Type, Agent and Text, but not the uri and the abbreviatedTex... Andreas Müller
12:37 PM feature request #6932: Migrate bulk editor
multi selection for deduplication is now available again Katja Luther
11:27 AM feature request #6932: Migrate bulk editor
save of the bulk editor only saves the edited elements now. Katja Luther
11:24 AM feature request #6932 (In Progress): Migrate bulk editor
after deduplication the symbol of the target does not disappear Katja Luther
11:41 AM task #7089: Rights and Roles Workshop 2017-11
Ja derzeit subsummiert dies alles unter term Tag "security". Eigentlich wäre ein spezifischeres Tag besser. Wir sollt... Andreas Müller
10:11 AM bug #6763 (In Progress): Editors do not ask for saving when closing the workbench
Andreas Müller
08:44 AM bug #6763: Editors do not ask for saving when closing the workbench
I added a check prior to closing the workbench where the user is asked to save the editors. Pressing "Cancel" will no... Patrick Plitzner
08:35 AM bug #6763: Editors do not ask for saving when closing the workbench
generalized topic because it happens for all e4 migrated editors while we are still using the e3-e4-bridge. Patrick Plitzner
08:49 AM feature request #7072: Nomenclatural cache for References
Hallo zusammen,
Nachtrag: die nomenklatorische Referenz enthält jetzt tatsächlich den ganzen Artikel-Titel – seh...
Katja Luther
08:47 AM feature request #7072: Nomenclatural cache for References
email von Henning, die Nummern beziehen sichg auf die Nummern auf dem screenshot:
Hallo zusammen,
ich verstehe ...
Katja Luther

11/23/2017

03:41 PM feature request #7090 (Duplicate): Implement matrix editor
Patrick Plitzner
02:24 PM task #7089 (In Progress): Rights and Roles Workshop 2017-11
The workshop will be held in from 27.11 - 30.11.2017
**Topics:**
* Do the current rights work correctly in TaxE...
Andreas Kohlbecker
02:16 PM bug #7088 (Closed): Media can not be saved in TaxEditor
Andreas Müller
12:11 PM bug #7088 (Resolved): Media can not be saved in TaxEditor
Applied in changeset commit:taxeditor|b2e81e61381419a5622f27874420ec1ce19cbbea. Andreas Müller
12:10 PM bug #7088 (Closed): Media can not be saved in TaxEditor
Andreas Müller
11:26 AM bug #7087 (Worksforme): description/accumulateDistributions webservice can not be triggered
After sending an HTTP Get request to the description/accumulateDistributions service nothing happens:
http://login...
Andreas Kohlbecker
10:48 AM feature request #6529: Extend WorkingSet to allow a more fine grained definiton of taxon set
To open the planned working set edior the user first has to select a working set or create a new one. To re-use exist... Patrick Plitzner
10:22 AM feature request #6529: Extend WorkingSet to allow a more fine grained definiton of taxon set
Can you please shortly describe (in #2335) why it is easier to handle a WorkingSet in the TaxEditor if it is Identifi... Andreas Müller
10:08 AM feature request #6529: Extend WorkingSet to allow a more fine grained definiton of taxon set
This already looks good but to be able to handle working sets easily in the editor we have to make them identifiable,... Patrick Plitzner
10:17 AM feature request #2335 (In Progress): Make WorkingSet IdentifiableEntity
Andreas Müller
10:09 AM feature request #7086 (Closed): Implement WorkingSet Editor
Patrick Plitzner
08:56 AM bug #7085: cdmserver logfiles getting too big, use RollingFileAppender
Also delete all /var/log/cdmserver/out.log files once this is released Andreas Kohlbecker
08:53 AM bug #7085 (Closed): cdmserver logfiles getting too big, use RollingFileAppender
cdmserver logfiles getting too big, use DailyRollingFileAppender
Keeping 7 daily logs should be sufficient since ...
Andreas Kohlbecker

11/22/2017

05:39 PM feature request #7083 (Resolved): Implement URI form element for SpecimenTypeDesignationDTOs
Applied in changeset commit:cdm-vaadin|aa47a3eda72631a95e9aa3ac3bfea81a04b85b87. Andreas Kohlbecker
05:05 PM feature request #7083 (Closed): Implement URI form element for SpecimenTypeDesignationDTOs
Specimens need to be referable via a stable URI identifier.
Implement a field in SpecimenTypeDesignationDTO and a ...
Andreas Kohlbecker
05:12 PM bug #7084 (New): display SpecimenOrObservationBase.preferredStableUri in DataPortal
see #7083 Andreas Kohlbecker
04:13 PM feature request #7082 (In Progress): Implement integration test for the SpecimenTypeDesignationWorkingsetEditorPresenter
I started with the implementation but faced a couple of problems with this. In order to test the presenter properly i... Andreas Kohlbecker
04:04 PM feature request #7082 (Closed): Implement integration test for the SpecimenTypeDesignationWorkingsetEditorPresenter
The SpecimenTypeDesignationWorkingsetEditorPresenter needs to perform business logic tasks and needs to configure the... Andreas Kohlbecker
01:49 PM feature request #7081: Deduplicate type information in dataportal if 2 equal types exist
this issue could potentially be relevant for phycobank Andreas Kohlbecker
01:45 PM feature request #7081 (New): Deduplicate type information in dataportal if 2 equal types exist
Sometimes names of the same homotypical group do have 2 different type designations which look equal. An example is M... Andreas Müller
01:29 PM bug #7079: P2 updates not found
Patrick, could you please check if #5061 and this ticket are duplicates? Andreas Müller
12:39 PM bug #7079: P2 updates not found
Hallo,

ich habe mir das geupdate des Editors in der develop version mal im wireshark angesehen:
![](wireshark-...
Andreas Kohlbecker
12:25 PM bug #7079 (Closed): P2 updates not found
The behavior of the automatic update is somewhat undeterministic: On some systems it works and on some it doesn't. Th... Patrick Plitzner
12:32 PM bug #7080 (Resolved): Fix matching for empty time periods
Check for similar cases (e.g. Point) before completely closing this issue. Andreas Müller
12:31 PM bug #7080 (Closed): Fix matching for empty time periods
If a time period is empty it will be loaded as an empty TimePeriod if the object is persisted. A new object may not h... Andreas Müller

11/21/2017

10:41 AM feature request #7078: sort result in taxon selection dialog
We may want to make this a preference. But the default should be to order like described above (higher ranks first). Andreas Müller
10:20 AM feature request #7078 (Closed): sort result in taxon selection dialog
in selection dialog the result is sorted only by alphabet, but especially for larger groups it is necessary to sort b... Katja Luther

11/20/2017

10:03 AM task #5083: Alternative image viewer for dataportal
**The [issue 78](https://github.com/UniversalViewer/universalviewer/issues/78 ) in Universal viewer has been fixed no... Andreas Kohlbecker

11/16/2017

01:32 PM bug #7077: INameService.deleteTypeDesignation(TaxonName name, TypeDesignationBase typeDesignation) should delete the type designation also from Registrations
Andreas Müller wrote:
> Can you give a bit more inside what exactly the problem is?
Ahh, sorry. You are referring...
Andreas Müller
01:31 PM bug #7077: INameService.deleteTypeDesignation(TaxonName name, TypeDesignationBase typeDesignation) should delete the type designation also from Registrations
Can you give a bit more inside what exactly the problem is? Andreas Müller
01:22 PM bug #7077 (Closed): INameService.deleteTypeDesignation(TaxonName name, TypeDesignationBase typeDesignation) should delete the type designation also from Registrations
Registrations have relation to TypeDesignationBase, deleted TypeDesignations should also be removed from there. Andreas Kohlbecker

11/15/2017

02:35 PM feature request #7076 (Closed): Add Nebula CompositeTable as direct dependency
...instead of as update site Patrick Plitzner
10:27 AM bug #6955: NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading
the level is displayed for the areas, too Katja Luther

11/14/2017

01:47 PM bug #6955 (Resolved): NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading
now the namedArea selection dialog works like the other selection dialogs and is much faster now.
Please review.
Katja Luther

11/13/2017

10:50 AM feature request #6909: Migrate taxon navigator
It looks like the automated creation of a new classification if no classification exists yet does not work anymore. I... Andreas Müller

11/11/2017

10:16 PM bug #7075 (In Progress): Excel import for images
This is urgently needed for Flora of Greece, but should be written in a way that it can be used through the TaxEditor... Andreas Müller
08:38 PM bug #7074 (In Progress): Use TimePeriod for Media.mediaCreated
Andreas Müller
08:38 PM bug #7074 (Closed): Use TimePeriod for Media.mediaCreated
For older images it is often not exactly known when the picture was taken/created. In flora of Greece we sometimes ha... Andreas Müller

11/10/2017

09:47 PM feature request #6932: Migrate bulk editor
one click on a record immediately goes into editing mode (enabled only for copy functionality). This is critical as u... Andreas Müller
09:44 PM feature request #6932: Migrate bulk editor
If a record is selected as target for duplicate removal it is not possible to directly remove it as target again. If ... Andreas Müller

11/08/2017

03:38 PM bug #6780 (Feedback): ConversationHolder isTransactionActive() returns true even if the transaction is completed
Andreas Müller
02:47 PM bug #7073 (Closed): add extension to a name does not result in a dirty state
adding an extension to name does not result in a dirty state and therefore can not be saved. this is the case only fo... Katja Luther
02:45 PM feature request #7072 (New): Nomenclatural cache for References
The CacheStrategy for the nomenclatural cache should be refactored.
* if the reference has an inReference the author...
Katja Luther
12:05 PM bug #7035 (Rejected): Vaadin views keeping connection open as long as the view has not exited
This issue is no longer relevant since we decided for a completely different approach, see #7046 Andreas Kohlbecker
11:24 AM bug #7035: Vaadin views keeping connection open as long as the view has not exited
Is this still an open issue? If yes, move to 4.12 Andreas Müller
11:16 AM feature request #6965 (In Progress): Tropicos Import
Andreas Müller
10:59 AM feature request #6909 (Feedback): Migrate taxon navigator
The clone assistent throws an NPE. All the rest works.
~~~
login : admin
editor version : 4.11.0.201711080902
s...
Andreas Müller
09:23 AM feature request #6909 (Resolved): Migrate taxon navigator
Fixed the two mentioned issues.
About restoring: Nothing is restored because we decided to start with a fresh work...
Patrick Plitzner
01:25 AM feature request #6909: Migrate taxon navigator
One more open issue: if restore is selected in preferences this does not work anymore. The navigator is always opened... Andreas Müller
10:55 AM feature request #7071 (New): Reenable restore functionality
With e4 we temporarily switched of the restore functionality in taxon navigator (before it could be be switched on vi... Andreas Müller
10:45 AM feature request #6595 (Feedback): Migrate name editor
Patrick Plitzner wrote:
> Handler was fixed.
In the old taxon, the synonym group is still visible (after reopen i...
Andreas Müller
09:47 AM feature request #6595 (Resolved): Migrate name editor
Handler was fixed.
Restoring was disabled on purpose (as described in #6909)
Patrick Plitzner
07:53 AM feature request #6595: Migrate name editor
Move synonym (homot. group) to a new accepted taxon does not work correctly. The result is correct, but after the ope... Andreas Müller
01:30 AM feature request #6595: Migrate name editor
Restoring name editors tabs after restart (maybe also reconnect?) does not work anymore, but did in 4.10. (see simila... Andreas Müller
10:41 AM feature request #6932: Migrate bulk editor

saving and sorting of taxa is fixed or improved
Katja Luther
09:53 AM bug #6159 (Feedback): improve distribution editor in TaxEditor
After adding multiple status and also adding a reference to a status I got a duplicate entry exception while saving:
...
Andreas Müller
09:51 AM bug #6159: improve distribution editor in TaxEditor
Can we move the filter to the top? I am not sure if this is really better, but somehow it feels more intuitive. Usual... Andreas Müller
09:49 AM bug #6159: improve distribution editor in TaxEditor
The "Verbreitungsstatus" combobox for selecting areas in the right lower corner has a strange behavior. Selecting are... Andreas Müller
09:46 AM bug #6159: improve distribution editor in TaxEditor
Label for filter should be "Filter", not "Search"/"Suche". Also label for "Anzahl der Elemente" should be "Anzahl Tax... Andreas Müller
09:39 AM bug #6159: improve distribution editor in TaxEditor
The new details view is great! Some minor issues:
* if one selects a status in the combobox the details view is n...
Andreas Müller
09:38 AM bug #6159: improve distribution editor in TaxEditor
the improvement of the area selection wizard is moved to the new ticket, so I will handle this for the next release. ... Katja Luther
09:27 AM bug #6159: improve distribution editor in TaxEditor
The area selection wizard works better now then before. Some minor issues:
* Handling of triple states: if only p...
Andreas Müller
09:38 AM feature request #7063: Improve the area selection wizard for distribution editor
The area selection wizard works better now then before. Some minor issues:
* Handling of triple states: if only pa...
Katja Luther
09:20 AM feature request #6974 (Resolved): improve the io wizards
Katja Luther
09:20 AM feature request #6974 (Feedback): improve the io wizards
sorry, was commited but not pushed
Katja Luther
09:19 AM feature request #6974 (Resolved): improve the io wizards
Applied in changeset commit:taxeditor|26e11c987cde1aff67b2290eb8579654c20ecd2a. Katja Luther

11/07/2017

07:31 PM feature request #7056: Media View should show Preview
The current implementation only iterates only on the parts of the first representation, but should iterate on all rep... Andreas Müller
01:44 PM feature request #7056 (Feedback): Media View should show Preview
The algorithm should always choose the smallest representation (or at least the best fitting for the given - small - ... Andreas Müller
01:15 PM feature request #7056 (Closed): Media View should show Preview
The base implementation seems to work correct. Andreas Müller
12:26 PM feature request #7056 (Resolved): Media View should show Preview
the preview is now available, it can be activated in preferences
at the moment it is not possible to have differen...
Katja Luther
07:02 PM feature request #6909: Migrate taxon navigator
All other functionality seems to work. So the open issues are #6909#note-22 and #6909#note-25 Andreas Müller
05:18 PM feature request #6909: Migrate taxon navigator
The experimental featues "Create taxon hierarchy" and "Clone classification" are missing in e4 context menu for class... Andreas Müller
04:23 PM feature request #6909: Migrate taxon navigator
There is an issue with "move factual data" but this is not migration related: #7068.
Another issue is related to del...
Andreas Müller
04:06 PM feature request #6909: Migrate taxon navigator
The "Customize View" does not exist anymore. But as filtering and showing synonyms did not seem to work in 4.10 neith... Andreas Müller
04:01 PM feature request #6909 (Feedback): Migrate taxon navigator
The "Link" button still does not work always. If I switch it on I first have to reset the focus to the name editor. I... Andreas Müller
11:17 AM feature request #6909 (Resolved): Migrate taxon navigator
Andreas Müller
05:39 PM bug #7059 (Resolved): use kindOfUnit for TypeDesisgnations instead of DerivationEvent type
Applied in changeset commit:cdm-vaadin|a69668dc4ea78568afafc0a82f96012188da46cc. Andreas Kohlbecker
04:50 PM feature request #6595 (Feedback): Migrate name editor
Name editor tabs do still show taxon titleCache but should show name titleCache Andreas Müller
03:36 PM feature request #6595: Migrate name editor
Misapplication issue seems to be fixed. Keep ticket open for general review of name editor. Andreas Müller
12:14 PM feature request #6595 (Resolved): Migrate name editor
Fixed misapplication handler and opened ticket for remaining issues. #7064
Please close after review
Patrick Plitzner
10:40 AM feature request #6595 (Feedback): Migrate name editor
Have to reopen as it is not possible anymore to add a misapplication to an accepted taxon. The according submenu in t... Andreas Müller
04:31 PM feature request #7070 (Closed): Registration workingset support for sections

The following diagram illustrates different situations of in-references regarding nomenclatural acts.
The *Article...
Andreas Kohlbecker
04:30 PM bug #7069 (Closed): Delete taxon node should have consistent configuration
**Currently delete in taxon navigator comes with 2 flavors: taxon nodes with children and without children.
Withou...
Andreas Müller
04:22 PM bug #7068 (Closed): Move factual data to a new taxon should use same classification as default
The according dialog always chooses the first classification as default classification but should choose the classifi... Andreas Müller
03:42 PM feature request #6974 (Feedback): improve the io wizards
Katja Luther wrote:
> Andreas Müller wrote:
> > Deduplicate authors and deduplicate references still exists in Norm...
Andreas Müller
03:10 PM feature request #6974 (Resolved): improve the io wizards
Katja Luther
03:10 PM feature request #6974: improve the io wizards
Andreas Müller wrote:
> Deduplicate authors and deduplicate references still exists in Normal explicit and Specimen ...
Katja Luther
03:00 PM feature request #6974 (Feedback): improve the io wizards
Andreas Müller wrote:
> Distribution update: the combobox already shows a preselected vocabulary but not selecting a...
Katja Luther
02:59 PM feature request #6974 (Resolved): improve the io wizards
Applied in changeset commit:taxeditor|9e44d75d4bbc2f4690bbd154edfc65a67301a831. Katja Luther
02:49 PM feature request #6974: improve the io wizards
Deduplicate authors and deduplicate references still exists in Normal explicit and Specimen Excel import but should b... Andreas Müller
02:40 PM feature request #6974 (Feedback): improve the io wizards
Distribution update: the combobox already shows a preselected vocabulary but not selecting a vocabulary again, the "N... Andreas Müller
03:24 PM feature request #6622 (Closed): Migrate remaining main menu items
Andreas Müller
01:23 PM feature request #6622 (Resolved): Migrate remaining main menu items
fixed Patrick Plitzner
08:58 AM feature request #6622 (Feedback): Migrate remaining main menu items
The tooltips still show things like "Show Part()" Andreas Müller
03:09 PM bug #6862 (Worksforme): Supplemental data view is grey when editing images in specimen tree editor
The later issue reminds me to #7000#note-8 . However, with the current TaxEditor instance I can't reproduce so I clos... Andreas Müller
02:55 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
moved new issues from #note-10 to new ticket #7067 Andreas Müller
02:54 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
ok Patrick Plitzner
02:12 PM bug #6924 (Worksforme): Taxon name incorrect after swap synonym with accepted taxon
OK, so I close the ticket as works for me? Andreas Müller
02:00 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
With the current nightly it worked. The details view show the correct name. Patrick Plitzner
01:51 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
Patrick Plitzner wrote:
> I only tested from IDE and on linux
Could you test with nightly, and if still there wit...
Andreas Müller
01:25 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
I only tested from IDE and on linux Patrick Plitzner
11:02 AM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
I can't reproduce the problem. The only refresh problem I see is that the navigator is not refreshed and still shows ... Andreas Müller
02:53 PM bug #7067 (New): Improve swap accepted with synonym configurable
Copied from #6924:
* The only refresh problem I see is that the navigator is not refreshed and still shows the old...
Andreas Müller
02:42 PM feature request #6932: Migrate bulk editor
Andreas Müller wrote:
> If I do research in bulk editor with no save than the dirty flag is not set back but should ...
Katja Luther
02:32 PM feature request #6932: Migrate bulk editor
Andreas Müller wrote:
> Changing a person to a team (1) has no visible effect. But after research the result is corr...
Katja Luther
02:30 PM feature request #6932: Migrate bulk editor
Andreas Müller wrote:
> ~~In taxon bulk editor, when clicking in details view on taxon or synonym section label to t...
Katja Luther
12:09 AM feature request #6932: Migrate bulk editor
Changing a person to a team (1) has no visible effect. But after research the result is correct. The same applies for... Andreas Müller
02:25 PM feature request #6908 (Closed): Migrate polytomous key module
Close this ticket and move uncritical open issues to #7038. All open issues are related to the graph view. Andreas Müller
02:19 PM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> When the focus is on PK node (e.g. click into statement textfield) the supplemental data fie...
Andreas Müller
12:30 PM feature request #6908: Migrate polytomous key module
Except for the last 3 issues and for the labeling of the graph view #note-20 all other open issues seem to be fixed. ... Andreas Müller
12:26 PM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> When the focus is on PK node (e.g. click into statement textfield) the supplemental data fie...
Andreas Müller
12:21 PM feature request #6908: Migrate polytomous key module
When the focus is on PK node (e.g. click into statement textfield) the supplemental data field shows label "SpecimenT... Andreas Müller
12:18 PM feature request #6908: Migrate polytomous key module
Open graph views are not synchronized anymore with the list view. E.g. if I add a new alternative in the list view it... Andreas Müller
10:25 AM feature request #6908 (Resolved): Migrate polytomous key module
Applied in changeset commit:taxeditor|d11a617c7b7a12e60965ce80474a0f8792deaadf. Katja Luther
01:02 AM feature request #6908: Migrate polytomous key module
The save behavior for PK and especially PK Graph is not very clear. Often it seems not to save if pressing save butto... Andreas Müller
12:49 AM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> When entering data into statement I got
>
> ~~~
> login : admin
> editor version : 4.1...
Andreas Müller
12:47 AM feature request #6908: Migrate polytomous key module
dirty flag is not set if choosing "new key number"-> "after current node" (and maybe after some others, e.g. "new al... Andreas Müller
12:34 AM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> Andreas Müller wrote:
> > When trying to add the first node to a PK via xxx I got a NoSuchM...
Andreas Müller
12:33 AM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> When trying to add the first node to a PK via xxx I got a NoSuchMethod exception. This is cr...
Andreas Müller
12:24 AM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> The label for the graph editor is to general "Polytomous Key Graph Editor". It should includ...
Andreas Müller
12:21 AM feature request #6908: Migrate polytomous key module
When trying to add the first node to a PK via xxx I got a NoSuchMethod exception. This is critical as it prevents fro... Andreas Müller
12:15 AM feature request #6908 (Feedback): Migrate polytomous key module
The same problem as in bulk editor. If no name editor is open than the details view gets empty as soon as you try to ... Andreas Müller
02:20 PM bug #7000 (Resolved): clicking in specimen details of bulk editor results in an empty details view
Andreas Müller wrote:
> Now clicking in the details view always shows supplemental data for SpecimenTypeDesignation ...
Andreas Müller
01:17 PM bug #7000 (Feedback): clicking in specimen details of bulk editor results in an empty details view
Now clicking in the details view always shows supplemental data for SpecimenTypeDesignation (see also comment in bulk... Andreas Müller
11:52 AM bug #7000 (Resolved): clicking in specimen details of bulk editor results in an empty details view
fixed with commit:taxeditor|ebbcecad930c1819d246bac81da4def861634870 Patrick Plitzner
11:06 AM bug #7000 (Feedback): clicking in specimen details of bulk editor results in an empty details view
this is still an open issue when no name editor is open (#6932#note-31) Andreas Müller
01:42 PM feature request #7066: media view with preview should have different row heights for different image sizes
As a preliminary step we could resize all preview images to a square. This reduces the height a bit and generally loo... Andreas Müller
12:26 PM feature request #7066 (New): media view with preview should have different row heights for different image sizes
the standard treeviewer is not able to create different heights of the rows, in one tree, therefore we should use neb... Katja Luther
12:18 PM feature request #4155 (Closed): Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree
close this ticket and create a new one for implementing a service method that returns the affected taxon nodes which ... Katja Luther
12:18 PM feature request #7065 (Closed): When updating a subtree the affected and opened taxa are not updated in name editor this needs to be handled
Is it possible to try to update existing values for open taxa (in name editor or elsewhere). This might be a general ... Katja Luther
12:14 PM bug #6998 (Closed): Potential NPE with endless loop when switching type of description element in details view
works now. Katja Luther
12:13 PM bug #7064 (Closed): NameEditor remaining issues
Copied from #6595:
* ~~Another less critical issue: context menu of accepted taxon shows "change to" which has 3 d...
Patrick Plitzner
12:11 PM feature request #7006 (Closed): Migrate preferences
looks fine now. Katja Luther
12:07 PM feature request #6990 (Closed): Migrate search result view
Looks fine now.
About the tooltips: this was an answer to #note-15 where you asked to also test tooltips and say t...
Andreas Müller
11:17 AM feature request #6990: Migrate search result view
Fixed the issue where the view is opened.
I don't understand what you mean with the tooltips. These are just the too...
Patrick Plitzner
11:54 AM bug #6159 (Resolved): improve distribution editor in TaxEditor
close this ticket and create a new one for the selection wizard problems (#7063) Katja Luther
11:54 AM feature request #7063 (Closed): Improve the area selection wizard for distribution editor
The wizard for selection of areas for the distribution editor should be improved.
* while opening the wizard the ...
Katja Luther
11:41 AM bug #6356: taxontree sort order as in editor
Can someone provide us with a good test case, example for well ordered taxon nodes which covers most of the special c... Andreas Kohlbecker
11:40 AM bug #7062: combo box for hierarchically sorted ranks select wrong terms
setting the comparator when the selection was already set created the wrong result Katja Luther
11:40 AM bug #7062 (Closed): combo box for hierarchically sorted ranks select wrong terms
Works fine now. Andreas Müller
11:37 AM bug #7062 (Closed): combo box for hierarchically sorted ranks select wrong terms
if the ranks are hierarchically ordered the selection in the combo box is wrong, for example selecting infradivision ... Katja Luther
11:25 AM bug #7058: Name Editor does not update after setting synonym to basionym in its group
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Katja:
> > I don't know if this is an old issue: but setting a...
Katja Luther
10:54 AM bug #7058: Name Editor does not update after setting synonym to basionym in its group
Patrick Plitzner wrote:
> Katja:
> I don't know if this is an old issue: but setting a synonym in a heterotypic (to...
Andreas Müller
11:22 AM feature request #6989 (Closed): Migrate concept graph view
Added new ticket -> #7061 Patrick Plitzner
11:22 AM bug #7061 (New): Show concept information in label for concept view and graph view
Patrick Plitzner

11/06/2017

11:55 PM feature request #6932: Migrate bulk editor
It is not possible anymore to select multiple row for select/deselect for deduplication candidate Andreas Müller
11:46 PM feature request #6932: Migrate bulk editor
Katja Luther wrote:
> > It is the same behavior as in the referencing objects view. It is not possible to edit the t...
Andreas Müller
11:34 PM feature request #6932: Migrate bulk editor
If I do re-search in bulk editor with no save than the dirty flag is not set back but should as the search should sta... Andreas Müller
11:29 PM feature request #6932: Migrate bulk editor
Andreas Müller wrote:
> This is also the case for other sections in other bulk editors detail views.
It is even...
Andreas Müller
11:21 PM feature request #6932: Migrate bulk editor
Andreas Müller wrote:
> In taxon bulk editor, when clicking in details view on taxon or synonym section label to try...
Andreas Müller
10:33 PM feature request #6932: Migrate bulk editor
In taxon bulk editor, when clicking in details view on taxon or synonym section label to try to collapse or expand it... Andreas Müller
10:24 PM feature request #6932: Migrate bulk editor
If one adds a marker via bulk editor this is generally immediately reflected in the supplemental data view, only the ... Andreas Müller
06:54 PM feature request #6932: Migrate bulk editor
Patrick Plitzner wrote:
> I reverted the changes so not saving works again. We should have a look at the performance...
Andreas Müller
06:51 PM feature request #6932 (Feedback): Migrate bulk editor
The bulk editor is not synchronized when data is changed in details view. This was the case in e3 (v4.10). We should ... Andreas Müller
06:49 PM feature request #6932: Migrate bulk editor
It looks like the search result at least in taxon bulk editor is not ordered. But maybe this was the case in e3 alrea... Andreas Müller
06:41 PM feature request #6989: Migrate concept graph view
Andreas Müller wrote:
> For both, the concept relationship view as well as the concept graph it would be nice to hav...
Andreas Müller
06:28 PM feature request #6989: Migrate concept graph view
For both, the concept relationship view as well as the concept graph it would be nice to have a label showing which t... Andreas Müller
06:25 PM feature request #6989: Migrate concept graph view
Patrick Plitzner wrote:
> Has this worked before? It seems like I did not change anything about the code that draws ...
Andreas Müller
06:22 PM bug #7060 (New): Concept graph view works only for relationships in one direction
If one creates a concept relationship in the concept relationship view it does not show up in the concept graph view.... Andreas Müller
06:08 PM feature request #7011: Migrate group authority editor
Reopening the editor after having it moved results in a grey (empty) editor. After moving it to another part it shows... Andreas Müller
06:05 PM feature request #7011: Migrate group authority editor
Trying to open the editor again result in an CCE:
~~~
login : admin
editor version : 4.11.0.201711061648
server...
Andreas Müller
06:04 PM feature request #7011: Migrate group authority editor
Saving does take extremely long or not work at all. Only save by close works fast. Andreas Müller
06:03 PM feature request #7011: Migrate group authority editor
Andreas Müller wrote:
> D&D still does not work.
Sorry, I worked with an old version. D&D works now.
Andreas Müller
05:48 PM feature request #7011 (Feedback): Migrate group authority editor
D&D still does not work.
Also the editor should open in the Editor part (together with name editor, bulk editor, e...
Andreas Müller
04:45 PM feature request #7011 (Resolved): Migrate group authority editor
Patrick Plitzner
05:42 PM feature request #6990 (Feedback): Migrate search result view
This seems to be fully implemented. Couldn't find any open issues.
All tooltips that were available in 4.10 are s...
Andreas Müller
05:30 PM bug #7059 (Closed): use kindOfUnit for TypeDesisgnations instead of DerivationEvent type
Currently the SpecimenTypeDesignationDTO & SpecimenTypeDesignationDTORow are using the DerivationEventType to define... Andreas Kohlbecker
05:17 PM bug #7046 (Closed): replace open session per view pattern by DTO strategy
Great thank you for this confirmation, i also could not produce any error. So i am closing this ticket now. Andreas Kohlbecker
05:05 PM bug #7046: replace open session per view pattern by DTO strategy
I have tested the distribution app intensively and couldn't find an problem, especially no LIE. Even after logout and... Andreas Müller
05:08 PM bug #6998 (Resolved): Potential NPE with endless loop when switching type of description element in details view
Andreas Müller
05:03 PM bug #6998: Potential NPE with endless loop when switching type of description element in details view
The details view is now updated. Please review Patrick Plitzner
05:05 PM feature request #7028 (Closed): make available distribution status configurable in vaadin distribution editor
I think this can be closed. Andreas Müller
05:05 PM feature request #7008: Migrate export wizards
Moving to next release as this is not really critical Patrick Plitzner
05:04 PM feature request #7006 (Resolved): Migrate preferences
Please review if preferences are stored now. Patrick Plitzner
05:02 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
@AM: Could you test this on your machine and see if you can reproduce that behavior? Patrick Plitzner
05:01 PM feature request #6909 (Closed): Migrate taxon navigator
Everything should be fixed or moved in to issues Patrick Plitzner
05:00 PM feature request #6595 (Closed): Migrate name editor
Created a new ticket for the remaining issues -> #7058
Patrick Plitzner
04:59 PM bug #7058 (New): Name Editor does not update after setting synonym to basionym in its group
Katja:
I don't know if this is an old issue: but setting a synonym in a heterotypic (to the accepted taxon) homotypi...
Patrick Plitzner
04:50 PM bug #7041 (Closed): D&D for classifications should not be possible and corrupts data
seems to be fixed. There is a new related issue #7057. Andreas Müller
04:48 PM bug #7057 (New): Incorrect D&D symbol in specimen tree editor
When dragging and dropping a classification or a taxon node from navigator (maybe also other objects from other views... Andreas Müller
04:18 PM feature request #7044 (Closed): Migrate theme
It is difficult to find examples for all colors and fonts but I haven't found anything looking strange so I think we ... Andreas Müller
04:15 PM bug #7055: automatic creation of registrations from name extension only for latest reference
more or less completely implemented but data is too inconsistent, so that this feature can not be used at the moment.... Andreas Kohlbecker
04:13 PM bug #7055 (In Progress): automatic creation of registrations from name extension only for latest reference
Andreas Kohlbecker
01:50 PM bug #7055 (Closed): automatic creation of registrations from name extension only for latest reference
The `RegistrationRequiredDataInserter` supports automatic creation of Registration entities on base of the IAPT exten... Andreas Kohlbecker
03:49 PM task #6606 (Resolved): Import Bogota specimen data
Andreas Müller
03:01 PM feature request #7056 (Resolved): Media View should show Preview
The media view should provide a preview of the image. the default should be no preview but it should be turned on by ... Katja Luther
12:33 PM feature request #4305: newly created entities must stay editable even if a user only has the permission to create them
The very important task is now being managed in #6867 this issue here therefore is no longer really pressing since it... Andreas Kohlbecker
10:33 AM task #7054 (In Progress): clean up initialization strategy using '.representations'
we have a couple of init-strategies which still include the representations:
~~~
DescriptionElementController.ja...
Andreas Kohlbecker
10:32 AM task #7052 (Rejected): discuss eager loading of term representations
Andreas Kohlbecker
10:31 AM task #7052: discuss eager loading of term representations
Ah ok, has this been changed during the last years? I am asking for eager loading of representations since we have a ... Andreas Kohlbecker

11/03/2017

11:39 PM task #7052 (Feedback): discuss eager loading of term representations
Maybe I misunderstand this ticket, but as far as I can see we do already have eager loading for representations.
See...
Andreas Müller
04:46 PM task #7052 (Rejected): discuss eager loading of term representations
is almost all cases when a term is being initialized via a initialization strategy the representations are also neede... Andreas Kohlbecker
05:35 PM bug #7053 (Closed): TeamOrPersonField disabled state inconsistent
Andreas Kohlbecker
05:35 PM bug #7053 (Resolved): TeamOrPersonField disabled state inconsistent
Applied in changeset commit:cdm-vaadin|66d3bbf2f9b26e1e151257dcae659b0caf353f3a. Andreas Kohlbecker
05:34 PM bug #7053 (Closed): TeamOrPersonField disabled state inconsistent
A couple of button and fields in the TeamOrPersonField are not correctly disabled when the user is not granted with t... Andreas Kohlbecker
04:36 PM bug #7051: SpecimenOrObservationBase.getOriginalUnit() unimplemented but used 2x
Using the wildcard "$" in initStrategies for SpecimenOrObservationBase with the AdvancedBeanInitializer a wardings ar... Andreas Kohlbecker
04:22 PM bug #7051 (New): SpecimenOrObservationBase.getOriginalUnit() unimplemented but used 2x
the SpecimenOrObservationBase.getOriginalUnit() is not yet implemented but used 2x, fortunately only in methods which... Andreas Kohlbecker
03:55 PM bug #7046: replace open session per view pattern by DTO strategy
Andreas Kohlbecker wrote:
> @Fabian: The refactoring is completed now. can you please do an in depth check on the di...
Andreas Kohlbecker
12:28 PM bug #7046 (Resolved): replace open session per view pattern by DTO strategy
@Fabian: The refactoring is completed now. can you please do an in depth check on the distribution editor to confirm ... Andreas Kohlbecker
10:45 AM bug #7046 (In Progress): replace open session per view pattern by DTO strategy
Andreas Kohlbecker
12:22 PM feature request #7050 (Feedback): conflicting modification check on save and conflict resolution dialog
The functionality of doing the tree-way comparison is a functionality which is useful for cdm applications in general... Andreas Kohlbecker
12:14 PM feature request #7050 (Feedback): conflicting modification check on save and conflict resolution dialog
Prior saving an entity check for intermediate modifications of the entity by other users. I case a modification by so... Andreas Kohlbecker

11/02/2017

05:10 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
very strange... I tested again with the actual nightly build and it works for me, in the screenshot syn was the synon... Katja Luther
03:40 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
The strange message should be fixed now. But still the problem is the same. I attached another screenshot. Syn is sel... Patrick Plitzner
02:45 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
really strange for me it works, but the last time I did it, an nearly empty message dialog pops up
no log message ...
Katja Luther
02:34 PM bug #6924 (Feedback): Taxon name incorrect after swap synonym with accepted taxon
This is still the same for me. The taxon and synonym swap in the editor but in the details view and in the title of t... Patrick Plitzner
12:42 PM bug #6924 (Resolved): Taxon name incorrect after swap synonym with accepted taxon
Patrick, can you finally review this as you created the ticket? Andreas Müller
12:33 PM bug #6924 (Worksforme): Taxon name incorrect after swap synonym with accepted taxon
No, I think this was a refresh problem of the details view Katja Luther
12:30 PM bug #6924: Taxon name incorrect after swap synonym with accepted taxon
is this still an open issue? Andreas Müller
03:12 PM feature request #6990 (Resolved): Migrate search result view
sorry was my fault. Test was the author and the searchbar only works on the nameCache Katja Luther
02:28 PM feature request #6990 (Feedback): Migrate search result view
Andreas Müller
02:25 PM feature request #6990: Migrate search result view
searching in taxon bulk editor and search bar provides in two different results. see attached screenshot Katja Luther
09:24 AM feature request #6990: Migrate search result view
Please also check the fonts used in the search results.
Also check if there are tooltips. But maybe they were alread...
Patrick Plitzner
02:55 PM bug #7049 (Worksforme): DB preferences should allow triple state to allow null values for checkboxes
Currently, if one changes a value e.g. a value on the specimen or observation page all the values are saved and set t... Andreas Müller
02:48 PM bug #7048 (Worksforme): DB preferences allow override needs to be implemented per preference, not per preference page
currently it is only possible to set the flag per preference page. I haven't tested how this is semantically interpre... Andreas Müller
02:27 PM feature request #6932 (Resolved): Migrate bulk editor
Andreas Müller
01:51 PM feature request #6932 (Closed): Migrate bulk editor
works fine now. Katja Luther
12:35 PM bug #6885: UserService.loadUserByUsername() cannot find user in long running session
Is this still an open issue after now not using long running sessions in Vaadin anymore? If not, can we set to Reject... Andreas Müller
12:33 PM bug #7036 (In Progress): correctly release vaadin view resources when the browser windows has been closed
Andreas Kohlbecker
12:31 PM bug #7027 (Closed): GrantedAuthorityImpl.authority entities inconsistent
Andreas Kohlbecker
11:05 AM feature request #6909: Migrate taxon navigator
Katja Luther wrote:
> It seems that there is a problem with the method LocalSelectionTransfer.getTransfer().getSelec...
Katja Luther
10:55 AM bug #7047 (Closed): Vaadin UI and View scope beans are not always destroyed correctly
while examining problems related to the connection pool runnig out of available connections it turned out that Vaadi... Andreas Kohlbecker
10:35 AM bug #7046 (Closed): replace open session per view pattern by DTO strategy
In #6687 the open session per view pattern has been implemented for the cdm-vaadin mvp framework.
It turned out t...
Andreas Kohlbecker
09:23 AM feature request #7044: Migrate theme
For Review just check if the colors and fonts look similar to before Patrick Plitzner
09:22 AM feature request #7044 (Resolved): Migrate theme
Patrick Plitzner
08:30 AM feature request #7044 (Closed): Migrate theme
Patrick Plitzner
09:13 AM bug #7045: portal/classification/{uuid}/childNodesOf/{uuid} service slow
Andreas Müller wrote:
> is this a duplicate or only related to #4962?
only related, #4962 is on the childNodesAt/{r...
Andreas Kohlbecker
09:12 AM bug #7045: portal/classification/{uuid}/childNodesOf/{uuid} service slow
is this a duplicate or only related to #4962? Andreas Müller
08:39 AM bug #7045 (Feedback): portal/classification/{uuid}/childNodesOf/{uuid} service slow

The portal/classification/{uuid}/childNodesOf/{uuid} service has become slow, requests take between 3 - 5 seconds:
...
Andreas Kohlbecker
 

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