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From 09/25/2017 to 10/24/2017

10/23/2017

06:19 PM bug #7033: protect User class methods from unauthorized use
was this on purpose given to me? Andreas Müller
03:29 PM bug #7033 (New): protect User class methods from unauthorized use
A User can potentially modify it's `User` data without being explicitly being authorized to do so. In order to securi... Andreas Kohlbecker
02:43 PM bug #6886 (Duplicate): Entity creation for users having only CREATE may fail in long running conversations
This is a duplicate of #7021 which meanwhile provides more details. Andreas Kohlbecker

10/21/2017

11:19 AM feature request #6932: Migrate bulk editor
In the new bulk editor it is not possible anymore to copy the text of the entries (or part of the text). This is an i... Andreas Müller
10:12 AM bug #7032 (New): Wrong label for Cancel in delete Dialog
The label for "Cancel" in Name bulk editor is "Überspringen" in German version. It should be "Cancel".
I didn't chec...
Andreas Müller
10:03 AM feature request #6595 (Feedback): Migrate name editor
The Name Editor can still be opened multiple times for the same taxon. At least this is the case when trying opening ... Andreas Müller
09:39 AM bug #7031 (Closed): Open in referencing objects view must not show "Open in referencing Objects"
The context menu of the referencing objects view currently allows "Open in -> referencing objects view". As long as w... Andreas Müller
09:33 AM bug #7030 (Closed): Opening referenced object of type designation throws NPE
What I did in caryo_nepenthes:
1. Open Nepenthes alicae F.M.Bailey in Name bulk editor
1. Open referencing object...
Andreas Müller

10/20/2017

12:29 PM feature request #6909: Migrate taxon navigator
the button for the sync taxon -> navigator should show if it is enabled or not. But it works.
the open in options ...
Katja Luther
09:55 AM feature request #6909: Migrate taxon navigator
The "Open in" options should now be correct. Now it also shows up in the referencing objects view but that should be ... Patrick Plitzner
08:35 AM feature request #6909: Migrate taxon navigator
I added the "link" option to the context menu. That was the fastest way to do it. I tried adding it to the toolbar pr... Patrick Plitzner
12:13 PM feature request #6990: Migrate search result view
only this problem still exists:
If preference "open search result in separate windows" is unchecked the search is ...
Katja Luther
12:10 PM feature request #6990: Migrate search result view
double click works fine now, the open in options work as well.
Katja Luther
10:20 AM feature request #6990: Migrate search result view
Andreas Müller wrote:
> Double click on an accepted taxon (of a classification) results in an "Unsupported Type" exc...
Patrick Plitzner
11:42 AM feature request #6974: improve the io wizards
move remaining issue (It would be nice if the dialog would always show in the title of the window of in the white are... Katja Luther
11:41 AM feature request #7029 (New): add import/export type to title of configuration wizard
It would be nice if the dialog would always show in the title of the window of in the white area which import/export ... Katja Luther
11:18 AM feature request #6595: Migrate name editor
> Wenn Synonyme nicht im Name Editor nicht editierbar sind, dann kann ich sie auch nicht
> auswählen, dann kann ich...
Katja Luther
11:07 AM feature request #6595 (Resolved): Migrate name editor
Applied in changeset commit:taxeditor|31e5785c8476d0eefc99ec19de7adc471eb580a4. Katja Luther
10:38 AM feature request #7028 (Closed): make available distribution status configurable in vaadin distribution editor
this is partly a cdmlib, partly a vaadin ticket Andreas Müller

10/19/2017

11:32 PM feature request #7006: Migrate preferences
Andreas Müller wrote:
> The preferences often show up in the search result view (see attachement). This shouldn't be...
Andreas Müller
10:59 PM feature request #7006: Migrate preferences
>Later on we should use Annotation to handle preferences (@Preference)
=> if not handled here but a good suggesti...
Andreas Müller
10:58 PM feature request #7006: Migrate preferences
Added Katja to let her know that this is still an open issue. Andreas Müller
10:57 PM feature request #7006 (Feedback): Migrate preferences
The preferences often show up in the search result view (see attachement). This shouldn't be and is critical. Andreas Müller
11:32 PM feature request #6990: Migrate search result view
There is also an issue with the local preferences are shown in the search result view #7006#note-8 and https://dev.e-... Andreas Müller
09:58 PM feature request #6990: Migrate search result view
If preference "open search result in separate windows" is unchecked the search is result is still opened in separate ... Andreas Müller
09:56 PM feature request #6990 (Feedback): Migrate search result view
Andreas Müller
09:14 PM feature request #6990: Migrate search result view
Double click on an accepted taxon (of a classification) results in an "Unsupported Type" exception (see attachement).... Andreas Müller
02:09 PM feature request #6990: Migrate search result view
There may be smaller errors but yes, please review. Patrick Plitzner
02:07 PM feature request #6990: Migrate search result view
Can this be reviewed Andreas Müller
10:49 PM feature request #6909: Migrate taxon navigator
1. The "Open in Referencing objects view" is missing in context menu.
2. "Open in Distribution Editor" is shown ev...
Andreas Müller
10:43 PM feature request #6909: Migrate taxon navigator
The complete symbol bar is missing (see attachement).
Therefore it is not possible anymore to switch off "Link wit...
Andreas Müller
09:48 PM feature request #7026 (Resolved): RegistrationVoter evaluates CdmAuthorities with RegistrationStatus properties
Applied in changeset commit:cdmlib|77b7dd7606494f59a6134bcc84aa95714b997ffb. Andreas Kohlbecker
04:26 PM feature request #7026 (In Progress): RegistrationVoter evaluates CdmAuthorities with RegistrationStatus properties
Andreas Kohlbecker
04:23 PM feature request #7026 (Closed): RegistrationVoter evaluates CdmAuthorities with RegistrationStatus properties

1. Registration Stage changes will be triggered via the REST services, (see #7012) this will require the remote use...
Andreas Kohlbecker
09:48 PM bug #7027 (Resolved): GrantedAuthorityImpl.authority entities inconsistent
Applied in changeset commit:cdmlib|fac124d1ab6cc18debff42faf61fd7eefb3da7e4. Andreas Kohlbecker
06:10 PM bug #7027: GrantedAuthorityImpl.authority entities inconsistent
This is not causing problems during the parsing or evaluation of authorities. I will commit the according test quite ... Andreas Kohlbecker
05:57 PM bug #7027 (Closed): GrantedAuthorityImpl.authority entities inconsistent

The operation part in the CdmAuthorities appear to be created inconsistently. Originally the single CRUD entries co...
Andreas Kohlbecker
02:34 PM feature request #6595 (Feedback): Migrate name editor
Andreas Müller
02:29 PM feature request #6595 (Resolved): Migrate name editor
Katja:
Es gibt noch zwei Sachen, die ich im Hinblick auf den Workshop kritisch finde:
~~Wenn ich einen neuen Na...
Patrick Plitzner
02:25 PM feature request #7025 (New): LoginDialog tabs configurable per cdmlib-remote instance
The tabs Register and PasswordRecovery need to be configurable, since not all projects will need or want to offer the... Andreas Kohlbecker
02:23 PM bug #6251: Add references to Vaadin Distribution Editor
Patrick is no longer working on vaadin distr. editor Andreas Müller
02:23 PM feature request #6598: Migrate commands and handlers
Yes. This will be closed when fully migrated. Patrick Plitzner
02:21 PM feature request #6598 (In Progress): Migrate commands and handlers
is this still an open issue? Andreas Müller
02:14 PM feature request #6932 (Feedback): Migrate bulk editor
Andreas Müller
11:51 AM feature request #6932 (Resolved): Migrate bulk editor
I tried in nightly. In name bulk editor there is no deduplication menu item.
But it is true that deduplication does ...
Patrick Plitzner
01:46 PM bug #7024 (Rejected): Preference pages are shown in editor parts
Sometimes preference pages are drawn into open parts of the editor.
One way to reproduce
1. Open a taxon name ed...
Patrick Plitzner
01:03 PM feature request #6974 (Resolved): improve the io wizards
Applied in changeset commit:taxeditor|0869e41d2e787a8a8a87273e3f3da4389c1d5ff3. Katja Luther
10:18 AM feature request #6974: improve the io wizards
Andreas Müller wrote:
> ~~SDD Export is still missing.~~
>
> ~~TCS import does not work at all (no dialog is open...
Katja Luther
12:22 PM feature request #4305 (In Progress): newly created entities must stay editable even if a user only has the permission to create them
Andreas Kohlbecker
12:20 PM feature request #6867 (New): explicitely assign and revoke UPDATE & DELETE permission per enitity in the registration workflow
Andreas Kohlbecker
12:18 PM feature request #6999 (Closed): RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity
Andreas Kohlbecker
11:45 AM bug #6862: Supplemental data view is grey when editing images in specimen tree editor
I cannot reproduce that behavior. But this does not seem to be critical because it seems like a refresh problem. Sett... Patrick Plitzner
10:05 AM task #7023 (In Progress): Replace the vaadin-table of the distribution editor by vaadin-grid
The performance of vaadin-table is insufficient and should be replaced by the more efficient and comfortable vaadin-g... Fabian Reimeier
10:01 AM feature request #7018 (Closed): implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase
Andreas Kohlbecker
09:57 AM bug #6994 (Closed): phycobankID links only active when status is PUBLISHED
Andreas Kohlbecker
09:56 AM bug #6995 (Closed): Show phycobankIDs in Workingset editor
Andreas Kohlbecker

10/18/2017

11:57 PM feature request #7011: Migrate group authority editor
Katja Luther wrote:
> D&D also does not work for nodes in taxonnavigator, maybe this has to be migrated first.
Se...
Andreas Müller
11:54 PM feature request #6974 (Feedback): improve the io wizards
SDD Export is still missing.
TCS import does not work at all (no dialog is opened).
It looks like ABCD is havin...
Andreas Müller
11:22 PM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> It is not possible to open multiple keys anymore. The existing open view is replaced instead...
Andreas Müller
11:15 PM feature request #6908: Migrate polytomous key module
same when entering data into any other field in details view Andreas Müller
11:14 PM feature request #6908: Migrate polytomous key module
When entering data into statement I got
~~~
login : admin
editor version : 4.11.0.201710181800
server : test.e...
Andreas Müller
11:13 PM feature request #6908: Migrate polytomous key module
It is not possible to open multiple keys anymore. The existing open view is replaced instead with the new data (did n... Andreas Müller
11:10 PM feature request #6908: Migrate polytomous key module
The zooming mechanism is not available anymore. This is good as the zoom does not clutter the symbol bar anymore with... Andreas Müller
11:06 PM feature request #6908: Migrate polytomous key module
For the graph editor I would expect a context menu for "add new child", etc. But I can see, that this is already miss... Andreas Müller
11:03 PM feature request #6908: Migrate polytomous key module
For the graph editor the details view does not show the details data of the selected node. Andreas Müller
11:02 PM feature request #6908: Migrate polytomous key module
The label for the graph editor is to general "Polytomous Key Graph Editor". It should include the name of the key. "P... Andreas Müller
10:58 PM feature request #6908: Migrate polytomous key module
When creating a new key and then trying to create a new alternative via context menu (should this menu entry be avail... Andreas Müller
10:54 PM feature request #6908: Migrate polytomous key module
When deleting a key the according editor is not closed. In e3 it was closed (and should be closed). Andreas Müller
10:53 PM feature request #6908 (Feedback): Migrate polytomous key module
In the PK View there is a context menu entry "Open in"-> Bulk Editor (disabled) now. This hasn't been there before an... Andreas Müller
10:35 PM bug #6862 (Feedback): Supplemental data view is grey when editing images in specimen tree editor
This seems to be fixed, but now I get the problem the other way round.
I running steps above (see description) I c...
Andreas Müller
01:53 PM bug #6862 (Resolved): Supplemental data view is grey when editing images in specimen tree editor
seems like this has already been fixed Patrick Plitzner
10:19 PM feature request #4155 (Feedback): Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree
* ~~Title is still missing in the Configurator dialog.~~
* ~~The title for "value" attribute is unclear, in German...
Andreas Müller
01:06 PM feature request #4155 (Resolved): Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree
Katja Luther
04:50 PM bug #6802 (Resolved): Selection of distribution in Vaadin distribution editor does throw LIE
Applied in changeset commit:cdm-vaadin|60e3839730560568e38a2ba6f87bd707e7044976. Fabian Reimeier
03:21 PM feature request #6932: Migrate bulk editor
I did it on my workspace but deleted the workbench.xmi Katja Luther
02:45 PM feature request #6932: Migrate bulk editor
Katja Luther wrote:
> in name bulk editor there is the possibility to deduplicate, but we do not have deduplication ...
Patrick Plitzner
02:05 PM feature request #6932 (Feedback): Migrate bulk editor
in name bulk editor there is the possibility to deduplicate, but we do not have deduplication for names yet.
in ol...
Katja Luther
02:50 PM feature request #6909: Migrate taxon navigator
Katja Luther wrote:
> select "Set secundum for subtree" with right click on taxon node
This is the exception ...
Patrick Plitzner
02:38 PM feature request #6909: Migrate taxon navigator
select "Set secundum for subtree" with right click on taxon node Katja Luther
02:32 PM feature request #6909: Migrate taxon navigator
Katja Luther wrote:
> in RemotingCdmHandlerE4.postOperation there is a NPE because onComplete of the operation retur...
Patrick Plitzner
01:59 PM feature request #6909 (Feedback): Migrate taxon navigator
Katja Luther
01:58 PM feature request #6909: Migrate taxon navigator
in RemotingCdmHandlerE4.postOperation there is a NPE because onComplete of the operation returns null
~~~ text
Ca...
Katja Luther
10:09 AM feature request #6909 (Resolved): Migrate taxon navigator
Patrick Plitzner
02:48 PM feature request #6595 (Closed): Migrate name editor
seems to work Katja Luther
02:16 PM feature request #6921 (Feedback): Migrate data import views
at the beginning always a message dialog pops up that all open editors and that the import is canceled but then the i... Katja Luther
02:09 PM feature request #3740: Allow recursively setting the publish bit for TaxonBase
Great. Thanks. Andreas Müller
01:14 PM feature request #3740 (Closed): Allow recursively setting the publish bit for TaxonBase
the changes were not saved, added @transactional annotation, now it works.
Katja Luther
02:01 PM feature request #7005 (Closed): Migrate import wizards
it's ok Katja Luther
02:00 PM bug #6914 (Closed): exception in bulk editor after search
Katja Luther
02:00 PM bug #6914: exception in bulk editor after search
the problem does not appear anymore. Katja Luther
01:54 PM bug #6914 (Resolved): exception in bulk editor after search
Patrick Plitzner
01:41 PM bug #6914 (Worksforme): exception in bulk editor after search
This has already been fixed Patrick Plitzner
01:51 PM bug #7022 (Rejected): TaxonName.protectedAuthorshipCache should initially be false
You are absolutely right there is obviously no `true` set as default default for `TaxonName.protectedAuthorshipCache`... Andreas Kohlbecker
12:13 PM bug #7022: TaxonName.protectedAuthorshipCache should initially be false
Can you give more information why you think that
"The default value of TaxonName.protectedAuthorshipCache is true"?...
Andreas Müller
11:40 AM bug #7022 (Rejected): TaxonName.protectedAuthorshipCache should initially be false
The default value of `TaxonName.protectedAuthorshipCache` is `true`. Since this cache is protected a user with the au... Andreas Kohlbecker
11:33 AM bug #7021: CREATE permission not sufficient to save new TaxonName entity
This issue is solved now by excluding un-proteced cache fields from the modification check in the CdmHibernateSecurit... Andreas Kohlbecker
11:23 AM bug #7021 (Resolved): CREATE permission not sufficient to save new TaxonName entity
Applied in changeset commit:cdmlib|7631d065e97a577e932260bf2546ab1c2b161fe2. Andreas Kohlbecker

10/17/2017

09:42 PM bug #7021: CREATE permission not sufficient to save new TaxonName entity
This problem is caused by the cache fields which are empty at the time when the merge happens. In turn of the flush t... Andreas Kohlbecker
05:57 PM bug #7021 (Resolved): CREATE permission not sufficient to save new TaxonName entity
Saving a newly created name entity fails if the authenticated use is only having the `TAXONNAME.[CREATE,READ]` author... Andreas Kohlbecker
04:29 PM feature request #6999 (Resolved): RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity
Applied in changeset commit:cdm-vaadin|1a38cf2c10b574f4d0d752973060a56f0f68c9ff. Andreas Kohlbecker
03:53 PM feature request #7018 (Resolved): implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase
Applied in changeset commit:cdmlib|88249c56f555abbd8f9e8b83e2a336dd8a8027b9. Andreas Kohlbecker
03:50 PM feature request #7020 (New): Allow SpecimenOrObservationBaseVoter to make futher voting decision on base of multiple authorities

DerivedUnits and DerivationEvents can form graphs with multiple roots.
~~~
fuA -- duA
\
...
Andreas Kohlbecker
01:17 PM feature request #7019 (Closed): sort import menu
ist es möglich, die zur Verfügung stehenden Importe noch ein bisschen zu sortieren?

Eine Sortierung könnte un...
Katja Luther
12:48 PM feature request #6908 (Resolved): Migrate polytomous key module
added the menu entry Patrick Plitzner

10/16/2017

06:20 PM feature request #6921 (Resolved): Migrate data import views
oops, some of the menu item handlers where shifted in the wrong order
Now it should work
Patrick Plitzner
01:59 PM feature request #6921: Migrate data import views
clicking on the tcs import menu item has no effect. Katja Luther
01:43 PM feature request #6921: Migrate data import views
for the taxonnavigator menu the entry for RIS points to the SDD import Katja Luther
01:41 PM feature request #6921 (Feedback): Migrate data import views
now there are different menu entries for the taxonnavigator and the main menu: in taxonnavigator there is Import Spec... Katja Luther
04:09 PM feature request #6974 (Resolved): improve the io wizards
Applied in changeset commit:taxeditor|273498506dd099b8d5b6c8b97a4dc6e10221f7df. Katja Luther
03:49 PM feature request #7018 (Closed): implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase
SpecimenOrObservationBase need to be protected by a SpecimenOrObservationBaseVoter which evaluates CRUD permissions ... Andreas Kohlbecker
03:47 PM feature request #7016 (Rejected): implement a CdmPermissionVoter for TypeDesignations
permissions for TypeDesignations are not really needed. It is completely sufficient to have permissions on `TaxonName... Andreas Kohlbecker
01:57 PM feature request #7008 (Feedback): Migrate export wizards
the jaxb export wizard and sdd export wizard has the next button activated, but there is no additional page any more.... Katja Luther
01:37 PM feature request #7008 (Resolved): Migrate export wizards
Katja Luther
12:50 PM feature request #7008 (Feedback): Migrate export wizards
Katja Luther
01:32 PM feature request #7006 (Closed): Migrate preferences
it takes quiet a long time to open the preferences, but it seems to work.
Katja Luther

10/15/2017

03:21 PM bug #7017 (New): Rendering of details view for common name description element take too long
Patrick Plitzner

10/13/2017

03:27 PM feature request #7016 (Rejected): implement a CdmPermissionVoter for TypeDesignations
TypeDesignations need to be protected by a TypeDesignationsVoter which evaluates CRUD permissions given to users or ... Andreas Kohlbecker
09:06 AM feature request #7015 (New): Migrate recent menu item
Patrick Plitzner

10/12/2017

03:13 PM feature request #6903 (In Progress): Requirements for checklisteditor of the German states
Andreas Müller

10/11/2017

04:03 PM feature request #6908: Migrate polytomous key module
Andreas Müller wrote:
> The view is still missing in the show view menu (should be in topmost group together with ta...
Andreas Müller
03:40 PM feature request #6908 (Feedback): Migrate polytomous key module
The view is still missing in the show view menu (should be in topmost group together with taxon navigator which is on... Andreas Müller
03:47 PM feature request #7011: Migrate group authority editor
D&D also does not work for nodes in taxonnavigator, maybe this has to be migrated first. Katja Luther
03:32 PM feature request #7011 (Feedback): Migrate group authority editor
D&D does not yet work. E.g. from Tax Navigator.
Andreas Müller
02:48 PM feature request #6989 (Feedback): Migrate concept graph view
Andreas Müller
02:46 PM feature request #6989: Migrate concept graph view
No graph is shown on my machine. I tested on testserver/rem_conf_am => Testklass - Sabularia Small.
The view shows...
Andreas Müller
02:32 PM feature request #6933 (Closed): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
Andreas Müller
10:54 AM feature request #6569 (Closed): Remove unused application model from taxeditor.application
Patrick Plitzner
10:52 AM feature request #6569 (Resolved): Remove unused application model from taxeditor.application
Applied in changeset commit:taxeditor|fa8cce45a6f3b17b03bd7f50e3a5b3c0e9a1d54a. Patrick Plitzner
12:03 AM feature request #6815 (Closed): OriginalSource idNamespace + idInSource default separator should be whitespace
This seems to work Andreas Müller
12:02 AM bug #6982: OriginalSource idNamespace + idInSource separator must be configurable
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> >Regarding configurability: A simple default character would no...
Andreas Müller

10/10/2017

04:19 PM feature request #7014 (Duplicate): Support for ORCID person ids in phycobank
[ORCID](https://orcid.org/) provides persistent digital identifier for persons. Phycobank should at least support but... Andreas Kohlbecker
11:03 AM bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree
This exception does not appear if it is called without the monitoring thread. As a workaround the monitoring thread i... Katja Luther
11:00 AM bug #7013 (Closed): NonUniqueObjectException for setSecundumReferenceForSubtree
The following exception occurs for SetSecundumReferenceForSubtree.
~~~ text
java.lang.IllegalStateException: or...
Katja Luther

10/09/2017

04:26 PM feature request #7011 (Resolved): Migrate group authority editor
Applied in changeset commit:taxeditor|d0eb8b9f48b808de39dcee2cc0245b409ef24c9d. Patrick Plitzner
04:25 PM feature request #7011 (Closed): Migrate group authority editor
Patrick Plitzner
03:46 PM feature request #7010 (Closed): Adapt handlers for multiple selection in e4 views
First, investigate if it is important to propagate the selection in each part individually via ESelectionService.setS... Patrick Plitzner
03:29 PM feature request #7009 (Closed): Replace part descriptor IDs in open handler with AppModel constants
Patrick Plitzner
10:16 AM feature request #6933 (Resolved): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
the two remaining issues are fixed with the last commit. Katja Luther

10/06/2017

04:34 PM feature request #7008 (Resolved): Migrate export wizards
Patrick Plitzner
03:18 PM feature request #7008 (Closed): Migrate export wizards
* ~~CDM light~~
* ~~CSV~~
* ~~CSV_NAME~~
* ~~CSV_PRINT~~
* ~~DwC-A~~
* ~~JAXB~~
* ~~SDD~~
Patrick Plitzner
01:51 PM feature request #7006 (Resolved): Migrate preferences
Patrick Plitzner
12:07 PM feature request #7007 (Rejected): Migrate IMemento functionality
Patrick:
"offensichtlich haben wir unsere Settings/Preferences/Mementos jetzt aktuell noch etwas mehr verteilt. Da...
Patrick Plitzner

10/05/2017

03:16 PM feature request #7006 (Closed): Migrate preferences
This can be done with a copy of the plugin provided by OPCoach (https://github.com/opcoach/e4Preferences).
This mi...
Patrick Plitzner
02:46 PM feature request #7005 (Resolved): Migrate import wizards
Patrick Plitzner
07:40 AM feature request #7005 (Closed): Migrate import wizards
* ~~BioCASE/GBIF~~
* ~~ABCD~~
* ~~Excel Distribution Data Update~~
* ~~Excel Normal Explicit Taxa~~
* ~~RIS Refer...
Patrick Plitzner

10/04/2017

06:25 PM feature request #6921: Migrate data import views
For opening the import wizards I added an extra menu because these wizard do not use the org.eclipse.ui.importWizards... Patrick Plitzner
06:20 PM feature request #6921 (Resolved): Migrate data import views
Applied in changeset commit:taxeditor|1a7f5070bc2ce3588c7255c1ee412e00f1b74582. Patrick Plitzner
01:40 PM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view
works now Katja Luther
12:04 PM bug #7000 (Resolved): clicking in specimen details of bulk editor results in an empty details view
Applied in changeset commit:taxeditor|5221978cf52b633e3d5e2adf7055133536863903. Patrick Plitzner
09:36 AM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view
the details view of specimen bulk editor disappears when clicking on the scrollbar or in one of the fields Katja Luther
12:48 PM feature request #6902 (Resolved): Migrate molecular module
Patrick Plitzner
11:54 AM bug #7002: Delete of contig sequence not possible
Katja Luther wrote:
> we decided that it is not possible to delete media from media specimen and from other places w...
Patrick Plitzner
11:39 AM bug #7002: Delete of contig sequence not possible
we decided that it is not possible to delete media from media specimen and from other places where they are directly ... Katja Luther
10:59 AM bug #7002 (New): Delete of contig sequence not possible
Deletion in specimen hierarchy editor is not possible because of the following message.
~~~
An object of eu.eta...
Patrick Plitzner
11:51 AM bug #5430: P2 update of Taxonomic Editor bundled with JRE does not work
On windows the update fails with the following exception:
~~~
!ENTRY org.eclipse.equinox.p2.engine 4 4 2017-09-09...
Patrick Plitzner
11:34 AM feature request #7004 (New): Adapt save option in specimen hierarchy editor to bulk editor
Andreas:
die erneute Suche im Specimen Tree Editor, nachdem man etwas editiert hat, erlaubt weiterhin nur Save ode...
Patrick Plitzner
11:22 AM bug #7003 (Worksforme): endless loop with IllegalArgumentException when no active conversation is found
This happens sometimes as is related to the mix of e3 and e4 views.
If this happens you can only force quit the taxe...
Patrick Plitzner
10:58 AM feature request #7001 (Closed): Show date and/or version-number on taxeditor download site
The date and/or version number of the taxeditor stable release to be downloaded from https://cybertaxonomy.eu/downloa... Fabian Reimeier

09/29/2017

02:31 PM feature request #6999 (Closed): RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity
Andreas Kohlbecker
01:52 PM bug #6998 (Feedback): Potential NPE with endless loop when switching type of description element in details view
the NPE is now fixed but the descriptionElement details view does not update after switching to textData.
closing th...
Katja Luther
10:10 AM bug #6998 (Resolved): Potential NPE with endless loop when switching type of description element in details view
Fixed with commit:taxeditor|f789bc46f5744f4f59c9ff83e5f7ea5483ea3869 Patrick Plitzner
10:09 AM bug #6998 (Closed): Potential NPE with endless loop when switching type of description element in details view
Norbert:
folgender Bug:
ich lege eine neue Distribution in den Faktendaten an und ändere anschließend die Feldf...
Patrick Plitzner
12:34 PM bug #6159: improve distribution editor in TaxEditor
now the details of the selected distribution are available in details view, the details of the distributions are disa... Katja Luther
10:39 AM bug #6994 (Resolved): phycobankID links only active when status is PUBLISHED
Applied in changeset commit:cdm-vaadin|677973fab639e9b0ae0edb6310fbeeb7066dbadb. Andreas Kohlbecker
10:39 AM bug #6995 (Resolved): Show phycobankIDs in Workingset editor
Applied in changeset commit:cdm-vaadin|677973fab639e9b0ae0edb6310fbeeb7066dbadb. Andreas Kohlbecker
08:52 AM feature request #6908 (Resolved): Migrate polytomous key module
Patrick Plitzner

09/28/2017

04:09 PM feature request #6997 (Closed): RegistrationUI: Show authenticated user in toolbar with option to logout
Andreas Kohlbecker
04:08 PM feature request #6997 (Resolved): RegistrationUI: Show authenticated user in toolbar with option to logout
Applied in changeset commit:cdm-vaadin|eca2b6b09654c7d2d20d2a93152ec92dd3948c59. Andreas Kohlbecker
10:22 AM feature request #6997 (Closed): RegistrationUI: Show authenticated user in toolbar with option to logout
Andreas Kohlbecker
10:12 AM bug #6987: LIE during name catalogue service call processing
this only can be reviewed after the release. Locally it worked as expected. Andreas Kohlbecker
10:11 AM bug #6987 (Resolved): LIE during name catalogue service call processing
Applied in changeset commit:cdmlib|3dcfb5ed8d6e9d4606308c1ed602ab1cecca72ca. Andreas Kohlbecker
10:04 AM bug #6995 (Closed): Show phycobankIDs in Workingset editor
The registration entries in the Workingset editor are missing the phycobank ID.
Currently the whole list of regist...
Andreas Kohlbecker
09:59 AM bug #6994 (Closed): phycobankID links only active when status is PUBLISHED
The phycobankID links in the registration UI should not be active when the status differs from PUBLISHED Andreas Kohlbecker
08:38 AM task #6993 (Duplicate): Implement web service tests
Andreas Kohlbecker
08:33 AM task #6992 (New): Refactor and modernize REST web service API
The cdmlib-remote controllers need to be harmonized and updated. This is the master ticked that assembles all related... Andreas Kohlbecker
08:04 AM bug #6991 (Worksforme): Exception while editing States in State term editor
~~~

!ENTRY eu.taxeditor 4 0 2017-09-27 12:10:39.866
!MESSAGE Could not get conversation for AbstractForm...
Patrick Plitzner

09/27/2017

07:09 PM feature request #6990 (Resolved): Migrate search result view
Applied in changeset commit:taxeditor|2ff53a7f8a8ec9eb8c5d4c8fb6b576d9ffb2f9f8. Patrick Plitzner
06:48 PM feature request #6990 (Closed): Migrate search result view
Patrick Plitzner
03:26 PM feature request #6985 (Resolved): display Registration metadata in footnotes
Applied in changeset commit:cdm-dataportal|eaff53f7fd5596477d627d0f827d0ca0f485c49e. Andreas Kohlbecker
01:36 PM feature request #6989 (Resolved): Migrate concept graph view
Applied in changeset commit:taxeditor|bb101b3b0c496ef690b379cacd5819592518e4a7. Patrick Plitzner
10:56 AM feature request #6989 (Closed): Migrate concept graph view
Patrick Plitzner
11:58 AM feature request #6812: Improve TaxEditor download site
In the standup today we decided to place the beautiful download page at https://cybertaxonomy.eu/taxeditor/download ... Andreas Kohlbecker
10:13 AM feature request #6812: Improve TaxEditor download site
If I remember correctly, the proposed download should be highlighted. But when I go onto the website (Linux 64bit) my... Patrick Plitzner
09:31 AM feature request #6812: Improve TaxEditor download site
Walter:
Aber die neue Download-Liste sieht ja schick aus! Aber leider kann ich jetzt nicht mehr das Datum der Dat...
Andreas Müller
10:55 AM feature request #6595 (Resolved): Migrate name editor
Patrick Plitzner

09/26/2017

04:53 PM feature request #6596 (Closed): Migrate specimen editor
Patrick Plitzner
04:51 PM feature request #6932 (Resolved): Migrate bulk editor
Patrick Plitzner
03:42 PM bug #6988 (New): dwca export webservice missing in swagger documentation
the `/dwca` endpoint is missing in the swagger documentation.
Add this endpoint to the swagger group "Data export...
Andreas Kohlbecker
03:24 PM bug #6987 (Closed): LIE during name catalogue service call processing

http://api.cybertaxonomy.org/col/name_catalogue/taxon.json?taxonUuid=a031b7b2-0803-4cd1-958e-d8e7376dbe2d
~~~
o...
Andreas Kohlbecker
01:50 PM bug #6844: New feature tree selection does not allow "no save"
still open Patrick Plitzner
01:49 PM bug #6763: Editors do not ask for saving when closing the workbench
Yes, this still happens Patrick Plitzner
12:52 PM task #6986 (In Progress): 4 animalia lists available for RL
Andreas Müller
12:52 PM task #6986 (Rejected): 4 animalia lists available for RL
The import will run into production_rl_animalia_final
* Säugetiere (BfN-Liste von 2009)
* Reptilien (BfN-Liste vo...
Andreas Müller
11:55 AM feature request #6985 (Closed): display Registration metadata in footnotes
in #6959 the display of Registration metadata in a Drupla block has been implemented.
Since a Taxon page can cont...
Andreas Kohlbecker
10:54 AM bug #6845 (Worksforme): dirty button does not work in feature tree editor
Andreas Müller
10:40 AM bug #6845 (Rejected): dirty button does not work in feature tree editor
this has already been fixed Patrick Plitzner
10:53 AM bug #6872 (Worksforme): Specimen editor does not enable save icon when editing
Andreas Müller
10:30 AM bug #6872 (Rejected): Specimen editor does not enable save icon when editing
This has already been fixed. Patrick Plitzner
10:11 AM feature request #6812: Improve TaxEditor download site
Andreas Kohlbecker wrote:
> But keep in mind that this will make the directory listing of download/taxeditor/ unacc...
Andreas Müller
09:56 AM feature request #6812: Improve TaxEditor download site
Andreas Müller wrote:
> We today decided to put the download site to https://dev.e-taxonomy.eu/download/taxeditor/st...
Andreas Kohlbecker
09:54 AM bug #6984 (Closed): withHeader is not yet working in DwC-A export
Andreas Müller

09/25/2017

11:53 PM feature request #6812 (Feedback): Improve TaxEditor download site
We today decided to put the download site to https://dev.e-taxonomy.eu/download/taxeditor/stable/ (before it was on h... Andreas Müller
02:43 PM feature request #6812 (Resolved): Improve TaxEditor download site
Andreas Müller
10:19 PM feature request #6693 (Closed): Implement missing nomenclatural codes for name detail element
This is now fully fixed Andreas Müller
01:42 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element
Andreas Müller wrote:
> It is still missing for "anamorphic" when changing from "Fungi" to e.g. ICNAFP. Anamorphic m...
Katja Luther
01:42 PM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element
Applied in changeset commit:taxeditor|202ba579336a7c3798e2acb9ffcfcb694ef69fcb. Katja Luther
01:40 PM feature request #6693: Implement missing nomenclatural codes for name detail element
All the rest seems to work as expected. Andreas Müller
01:35 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element
It is still missing for "anamorphic" when changing from "Fungi" to e.g. ICNAFP. Anamorphic must not be true for any o... Andreas Müller
09:17 AM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element
Andreas Müller wrote:
> It seems to be available only for "Name Approbation". But it should be available for all att...
Katja Luther
03:52 PM feature request #6509 (Resolved): Implement Representation csv import
should we close this and open new ticket for remaining issues? Andreas Müller
03:12 PM bug #5965 (Worksforme): Check if authentication works correctly after datasource change
Can't reproduce this anymore. Maybe it fixed in the meanwhile or was related to the update. Andreas Müller
02:46 PM bug #6968 (Closed): Unexpected error in CDM light when exporting Individuals Association with no unit attached
Looks ok. Andreas Müller
12:58 PM bug #6968 (Resolved): Unexpected error in CDM light when exporting Individuals Association with no unit attached
Applied in changeset commit:cdmlib|4cfa061e291e90d77dc09e7d09f37f53c98e4e0b. Katja Luther
02:34 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
This is fixed now.
Remaining layout issues:
* indentation
* duplicated label for "Export complete classificati...
Andreas Müller
01:56 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
Also when I open the export for a certain node but then choose "Export complete classification" the first classificat... Andreas Müller
01:54 PM feature request #6933 (Feedback): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
Now when trying to open the export from a classification node I get an NPE
~~~
login : admin
editor version : 4....
Andreas Müller
01:02 PM feature request #6933 (Resolved): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
Katja Luther
01:43 PM bug #6494 (Worksforme): Fix null titleCache for CoL import
In the latest CoL import there is no Reference with titleCache = null. So this can be closed. Andreas Müller
01:37 PM bug #6983 (Duplicate): details view of misapplied names needs refresh after exchange of taxon
Katja Luther
01:34 PM bug #6983 (Duplicate): details view of misapplied names needs refresh after exchange of taxon
after changing the taxon of misapplied name relationship the details view does not update, the taxon shown in the nam... Katja Luther
01:31 PM bug #6789 (Closed): Remaining issues for misapplied name details view
Looks fine now.
The remaining 2 issues are that the name editor and the details view do not fully correctly refere...
Andreas Müller
09:32 AM bug #6789 (Resolved): Remaining issues for misapplied name details view
Andreas Müller wrote:
> jetzt gibt es noch ein Problem mit den Misapplied Names. Wenn ich wie (im attachement) „Mein...
Katja Luther
01:19 PM feature request #6815: OriginalSource idNamespace + idInSource default separator should be whitespace
I will review this after the release. Andreas Müller
12:40 PM feature request #6815: OriginalSource idNamespace + idInSource default separator should be whitespace
Created new ticket for the configurability issue: #6982
Andreas Müller
12:16 PM feature request #6815 (Resolved): OriginalSource idNamespace + idInSource default separator should be whitespace
Andreas Kohlbecker
12:16 PM feature request #6815: OriginalSource idNamespace + idInSource default separator should be whitespace
Andreas Müller wrote:
> Can we still implement the new default in 4.10?
Ok, I changed the seperator to the space ch...
Andreas Kohlbecker
10:36 AM feature request #6815 (Feedback): OriginalSource idNamespace + idInSource default separator should be whitespace
Andreas Kohlbecker
12:59 PM bug #3790 (Worksforme): After swapping accepted <> synonym the TaxonNavigator should be refreshed
this is no issue anymore Katja Luther
12:43 PM bug #6982: OriginalSource idNamespace + idInSource separator must be configurable
Andreas Kohlbecker wrote:
>Regarding configurability: A simple default character would not be suffcient. Woul'nt we ...
Andreas Müller
12:39 PM bug #6982 (New): OriginalSource idNamespace + idInSource separator must be configurable
> der Slash in [Fig./1] steht nicht in den Daten, wo kommt der her?
Fig .1 ist in den Daten als "idInSource": "1",...
Andreas Müller
12:33 PM bug #6894 (Closed): NPE when trying drag&drop a Classification to the GrantedAuthority editor
Looks good now. Andreas Müller
10:21 AM bug #6894 (Resolved): NPE when trying drag&drop a Classification to the GrantedAuthority editor
sorry, I reverted the changes and now the root node is used for the TaxonNodeVoter Katja Luther
12:24 PM feature request #6911 (Closed): Migrate concept view
Fix seems to work. So we can close the ticket I think. Andreas Müller
12:23 PM bug #6842 (Closed): NPE in Registration constructor when name is null
Andreas Kohlbecker
12:22 PM feature request #6654 (Closed): implement a CdmPermissionVoter for Registrations
Andreas Kohlbecker
12:21 PM feature request #6959 (Closed): Block to display Registration metadata
Andreas Kohlbecker
12:20 PM feature request #6703 (Closed): Improve title handling for media in dataportal
Andreas Kohlbecker
10:52 AM bug #6897: i18n Messages.java files are missing in the build version
Andreas Müller wrote:
> I think this was fixed in 4.9.2 not 4.10. Please correct me if this is not true.
4.9.2 wa...
Patrick Plitzner
10:30 AM feature request #6791: Test RMIIO for remote procedure calls of streams in TaxEditor
Imports and Exports are the most important usecases I do know for now. So this is both directions.
Andreas Müller
10:20 AM feature request #6791: Test RMIIO for remote procedure calls of streams in TaxEditor
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > Please give more details on the problems that rise this requi...
Andreas Kohlbecker
10:04 AM feature request #6791: Test RMIIO for remote procedure calls of streams in TaxEditor
Andreas Kohlbecker wrote:
> Please give more details on the problems that rise this requirement: For which situation...
Andreas Müller
10:09 AM feature request #6840: Translate dataportal to German
Can we install this on production? Andreas Müller
10:07 AM bug #6825: Specimen map shows point data only if ALL field units are georeferenced
it's more a matter of performance :-) Andreas Müller
 

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