Activity

From 09/22/2017 to 10/21/2017

10/21/2017

11:19 AM feature request #6932: Migrate bulk editor: In the new bulk editor it is not possible anymore to copy the text of the entries (or part of the text). This is an i... Andreas Müller
10:12 AM bug #7032 (New): Wrong label for Cancel in delete Dialog: The label for "Cancel" in Name bulk editor is "Überspringen" in German version. It should be "Cancel".
I didn't chec... Andreas Müller
10:03 AM feature request #6595 (Feedback): Migrate name editor: The Name Editor can still be opened multiple times for the same taxon. At least this is the case when trying opening ... Andreas Müller
09:39 AM bug #7031 (Closed): Open in referencing objects view must not show "Open in referencing Objects": The context menu of the referencing objects view currently allows "Open in -> referencing objects view". As long as w... Andreas Müller
09:33 AM bug #7030 (Closed): Opening referenced object of type designation throws NPE: What I did in caryo_nepenthes:
1. Open Nepenthes alicae F.M.Bailey in Name bulk editor
1. Open referencing object... Andreas Müller

10/20/2017

12:29 PM feature request #6909: Migrate taxon navigator: the button for the sync taxon -> navigator should show if it is enabled or not. But it works.
the open in options ... Katja Luther
09:55 AM feature request #6909: Migrate taxon navigator: The "Open in" options should now be correct. Now it also shows up in the referencing objects view but that should be ... Patrick Plitzner
08:35 AM feature request #6909: Migrate taxon navigator: I added the "link" option to the context menu. That was the fastest way to do it. I tried adding it to the toolbar pr... Patrick Plitzner
12:13 PM feature request #6990: Migrate search result view: only this problem still exists:
If preference "open search result in separate windows" is unchecked the search is ... Katja Luther
12:10 PM feature request #6990: Migrate search result view: double click works fine now, the open in options work as well.
Katja Luther
10:20 AM feature request #6990: Migrate search result view: Andreas Müller wrote:
> Double click on an accepted taxon (of a classification) results in an "Unsupported Type" exc... Patrick Plitzner
11:42 AM feature request #6974: improve the io wizards: move remaining issue (It would be nice if the dialog would always show in the title of the window of in the white are... Katja Luther
11:41 AM feature request #7029 (New): add import/export type to title of configuration wizard: It would be nice if the dialog would always show in the title of the window of in the white area which import/export ... Katja Luther
11:18 AM feature request #6595: Migrate name editor: > Wenn Synonyme nicht im Name Editor nicht editierbar sind, dann kann ich sie auch nicht
> auswählen, dann kann ich... Katja Luther
11:07 AM feature request #6595 (Resolved): Migrate name editor: Applied in changeset commit:taxeditor|31e5785c8476d0eefc99ec19de7adc471eb580a4. Katja Luther
10:38 AM feature request #7028 (Closed): make available distribution status configurable in vaadin distribution editor: this is partly a cdmlib, partly a vaadin ticket Andreas Müller

10/19/2017

11:32 PM feature request #7006: Migrate preferences: Andreas Müller wrote:
> The preferences often show up in the search result view (see attachement). This shouldn't be... Andreas Müller
10:59 PM feature request #7006: Migrate preferences: >Later on we should use Annotation to handle preferences (@Preference)
=> if not handled here but a good suggesti... Andreas Müller
10:58 PM feature request #7006: Migrate preferences: Added Katja to let her know that this is still an open issue. Andreas Müller
10:57 PM feature request #7006 (Feedback): Migrate preferences: The preferences often show up in the search result view (see attachement). This shouldn't be and is critical. Andreas Müller
11:32 PM feature request #6990: Migrate search result view: There is also an issue with the local preferences are shown in the search result view #7006#note-8 and https://dev.e-... Andreas Müller
09:58 PM feature request #6990: Migrate search result view: If preference "open search result in separate windows" is unchecked the search is result is still opened in separate ... Andreas Müller
09:56 PM feature request #6990 (Feedback): Migrate search result view: Andreas Müller
09:14 PM feature request #6990: Migrate search result view: Double click on an accepted taxon (of a classification) results in an "Unsupported Type" exception (see attachement).... Andreas Müller
02:09 PM feature request #6990: Migrate search result view: There may be smaller errors but yes, please review. Patrick Plitzner
02:07 PM feature request #6990: Migrate search result view: Can this be reviewed Andreas Müller
10:49 PM feature request #6909: Migrate taxon navigator: 1. The "Open in Referencing objects view" is missing in context menu.
2. "Open in Distribution Editor" is shown ev... Andreas Müller
10:43 PM feature request #6909: Migrate taxon navigator: The complete symbol bar is missing (see attachement).
Therefore it is not possible anymore to switch off "Link wit... Andreas Müller
09:48 PM feature request #7026 (Resolved): RegistrationVoter evaluates CdmAuthorities with RegistrationStatus properties: Applied in changeset commit:cdmlib|77b7dd7606494f59a6134bcc84aa95714b997ffb. Andreas Kohlbecker
04:26 PM feature request #7026 (In Progress): RegistrationVoter evaluates CdmAuthorities with RegistrationStatus properties: Andreas Kohlbecker
04:23 PM feature request #7026 (Closed): RegistrationVoter evaluates CdmAuthorities with RegistrationStatus properties: 1. Registration Stage changes will be triggered via the REST services, (see #7012) this will require the remote use... Andreas Kohlbecker
09:48 PM bug #7027 (Resolved): GrantedAuthorityImpl.authority entities inconsistent: Applied in changeset commit:cdmlib|fac124d1ab6cc18debff42faf61fd7eefb3da7e4. Andreas Kohlbecker
06:10 PM bug #7027: GrantedAuthorityImpl.authority entities inconsistent: This is not causing problems during the parsing or evaluation of authorities. I will commit the according test quite ... Andreas Kohlbecker
05:57 PM bug #7027 (Closed): GrantedAuthorityImpl.authority entities inconsistent: The operation part in the CdmAuthorities appear to be created inconsistently. Originally the single CRUD entries co... Andreas Kohlbecker
02:34 PM feature request #6595 (Feedback): Migrate name editor: Andreas Müller
02:29 PM feature request #6595 (Resolved): Migrate name editor: Katja:
Es gibt noch zwei Sachen, die ich im Hinblick auf den Workshop kritisch finde:
~~Wenn ich einen neuen Na... Patrick Plitzner
02:25 PM feature request #7025 (New): LoginDialog tabs configurable per cdmlib-remote instance: The tabs Register and PasswordRecovery need to be configurable, since not all projects will need or want to offer the... Andreas Kohlbecker
02:23 PM bug #6251: Add references to Vaadin Distribution Editor: Patrick is no longer working on vaadin distr. editor Andreas Müller
02:23 PM feature request #6598: Migrate commands and handlers: Yes. This will be closed when fully migrated. Patrick Plitzner
02:21 PM feature request #6598 (In Progress): Migrate commands and handlers: is this still an open issue? Andreas Müller
02:14 PM feature request #6932 (Feedback): Migrate bulk editor: Andreas Müller
11:51 AM feature request #6932 (Resolved): Migrate bulk editor: I tried in nightly. In name bulk editor there is no deduplication menu item.
But it is true that deduplication does ... Patrick Plitzner
01:46 PM bug #7024 (Rejected): Preference pages are shown in editor parts: Sometimes preference pages are drawn into open parts of the editor.
One way to reproduce
1. Open a taxon name ed... Patrick Plitzner
01:03 PM feature request #6974 (Resolved): improve the io wizards: Applied in changeset commit:taxeditor|0869e41d2e787a8a8a87273e3f3da4389c1d5ff3. Katja Luther
10:18 AM feature request #6974: improve the io wizards: Andreas Müller wrote:
> ~~SDD Export is still missing.~~
>
> ~~TCS import does not work at all (no dialog is open... Katja Luther
12:22 PM feature request #4305 (In Progress): newly created entities must stay editable even if a user only has the permission to create them: Andreas Kohlbecker
12:20 PM feature request #6867 (New): explicitely assign and revoke UPDATE & DELETE permission per enitity in the registration workflow: Andreas Kohlbecker
12:18 PM feature request #6999 (Closed): RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity: Andreas Kohlbecker
11:45 AM bug #6862: Supplemental data view is grey when editing images in specimen tree editor: I cannot reproduce that behavior. But this does not seem to be critical because it seems like a refresh problem. Sett... Patrick Plitzner
10:05 AM task #7023 (In Progress): Replace the vaadin-table of the distribution editor by vaadin-grid: The performance of vaadin-table is insufficient and should be replaced by the more efficient and comfortable vaadin-g... Fabian Reimeier
10:01 AM feature request #7018 (Closed): implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase: Andreas Kohlbecker
09:57 AM bug #6994 (Closed): phycobankID links only active when status is PUBLISHED: Andreas Kohlbecker
09:56 AM bug #6995 (Closed): Show phycobankIDs in Workingset editor: Andreas Kohlbecker

10/18/2017

11:57 PM feature request #7011: Migrate group authority editor: Katja Luther wrote:
> D&D also does not work for nodes in taxonnavigator, maybe this has to be migrated first.
Se... Andreas Müller
11:54 PM feature request #6974 (Feedback): improve the io wizards: SDD Export is still missing.
TCS import does not work at all (no dialog is opened).
It looks like ABCD is havin... Andreas Müller
11:22 PM feature request #6908: Migrate polytomous key module: Andreas Müller wrote:
> It is not possible to open multiple keys anymore. The existing open view is replaced instead... Andreas Müller
11:15 PM feature request #6908: Migrate polytomous key module: same when entering data into any other field in details view Andreas Müller
11:14 PM feature request #6908: Migrate polytomous key module: When entering data into statement I got
~~~
login : admin
editor version : 4.11.0.201710181800
server : test.e... Andreas Müller
11:13 PM feature request #6908: Migrate polytomous key module: It is not possible to open multiple keys anymore. The existing open view is replaced instead with the new data (did n... Andreas Müller
11:10 PM feature request #6908: Migrate polytomous key module: The zooming mechanism is not available anymore. This is good as the zoom does not clutter the symbol bar anymore with... Andreas Müller
11:06 PM feature request #6908: Migrate polytomous key module: For the graph editor I would expect a context menu for "add new child", etc. But I can see, that this is already miss... Andreas Müller
11:03 PM feature request #6908: Migrate polytomous key module: For the graph editor the details view does not show the details data of the selected node. Andreas Müller
11:02 PM feature request #6908: Migrate polytomous key module: The label for the graph editor is to general "Polytomous Key Graph Editor". It should include the name of the key. "P... Andreas Müller
10:58 PM feature request #6908: Migrate polytomous key module: When creating a new key and then trying to create a new alternative via context menu (should this menu entry be avail... Andreas Müller
10:54 PM feature request #6908: Migrate polytomous key module: When deleting a key the according editor is not closed. In e3 it was closed (and should be closed). Andreas Müller
10:53 PM feature request #6908 (Feedback): Migrate polytomous key module: In the PK View there is a context menu entry "Open in"-> Bulk Editor (disabled) now. This hasn't been there before an... Andreas Müller
10:35 PM bug #6862 (Feedback): Supplemental data view is grey when editing images in specimen tree editor: This seems to be fixed, but now I get the problem the other way round.
I running steps above (see description) I c... Andreas Müller
01:53 PM bug #6862 (Resolved): Supplemental data view is grey when editing images in specimen tree editor: seems like this has already been fixed Patrick Plitzner
10:19 PM feature request #4155 (Feedback): Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree: * ~~Title is still missing in the Configurator dialog.~~
* ~~The title for "value" attribute is unclear, in German... Andreas Müller
01:06 PM feature request #4155 (Resolved): Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree: Katja Luther
04:50 PM bug #6802 (Resolved): Selection of distribution in Vaadin distribution editor does throw LIE: Applied in changeset commit:cdm-vaadin|60e3839730560568e38a2ba6f87bd707e7044976. Fabian Reimeier
03:21 PM feature request #6932: Migrate bulk editor: I did it on my workspace but deleted the workbench.xmi Katja Luther
02:45 PM feature request #6932: Migrate bulk editor: Katja Luther wrote:
> in name bulk editor there is the possibility to deduplicate, but we do not have deduplication ... Patrick Plitzner
02:05 PM feature request #6932 (Feedback): Migrate bulk editor: in name bulk editor there is the possibility to deduplicate, but we do not have deduplication for names yet.
in ol... Katja Luther
02:50 PM feature request #6909: Migrate taxon navigator: Katja Luther wrote:
> select "Set secundum for subtree" with right click on taxon node
This is the exception ... Patrick Plitzner
02:38 PM feature request #6909: Migrate taxon navigator: select "Set secundum for subtree" with right click on taxon node Katja Luther
02:32 PM feature request #6909: Migrate taxon navigator: Katja Luther wrote:
> in RemotingCdmHandlerE4.postOperation there is a NPE because onComplete of the operation retur... Patrick Plitzner
01:59 PM feature request #6909 (Feedback): Migrate taxon navigator: Katja Luther
01:58 PM feature request #6909: Migrate taxon navigator: in RemotingCdmHandlerE4.postOperation there is a NPE because onComplete of the operation returns null
~~~ text
Ca... Katja Luther
10:09 AM feature request #6909 (Resolved): Migrate taxon navigator: Patrick Plitzner
02:48 PM feature request #6595 (Closed): Migrate name editor: seems to work Katja Luther
02:16 PM feature request #6921 (Feedback): Migrate data import views: at the beginning always a message dialog pops up that all open editors and that the import is canceled but then the i... Katja Luther
02:09 PM feature request #3740: Allow recursively setting the publish bit for TaxonBase: Great. Thanks. Andreas Müller
01:14 PM feature request #3740 (Closed): Allow recursively setting the publish bit for TaxonBase: the changes were not saved, added @transactional annotation, now it works.
Katja Luther
02:01 PM feature request #7005 (Closed): Migrate import wizards: it's ok Katja Luther
02:00 PM bug #6914 (Closed): exception in bulk editor after search: Katja Luther
02:00 PM bug #6914: exception in bulk editor after search: the problem does not appear anymore. Katja Luther
01:54 PM bug #6914 (Resolved): exception in bulk editor after search: Patrick Plitzner
01:41 PM bug #6914 (Worksforme): exception in bulk editor after search: This has already been fixed Patrick Plitzner
01:51 PM bug #7022 (Rejected): TaxonName.protectedAuthorshipCache should initially be false: You are absolutely right there is obviously no `true` set as default default for `TaxonName.protectedAuthorshipCache`... Andreas Kohlbecker
12:13 PM bug #7022: TaxonName.protectedAuthorshipCache should initially be false: Can you give more information why you think that
"The default value of TaxonName.protectedAuthorshipCache is true"?... Andreas Müller
11:40 AM bug #7022 (Rejected): TaxonName.protectedAuthorshipCache should initially be false: The default value of `TaxonName.protectedAuthorshipCache` is `true`. Since this cache is protected a user with the au... Andreas Kohlbecker
11:33 AM bug #7021: CREATE permission not sufficient to save new TaxonName entity: This issue is solved now by excluding un-proteced cache fields from the modification check in the CdmHibernateSecurit... Andreas Kohlbecker
11:23 AM bug #7021 (Resolved): CREATE permission not sufficient to save new TaxonName entity: Applied in changeset commit:cdmlib|7631d065e97a577e932260bf2546ab1c2b161fe2. Andreas Kohlbecker

10/17/2017

09:42 PM bug #7021: CREATE permission not sufficient to save new TaxonName entity: This problem is caused by the cache fields which are empty at the time when the merge happens. In turn of the flush t... Andreas Kohlbecker
05:57 PM bug #7021 (Resolved): CREATE permission not sufficient to save new TaxonName entity: Saving a newly created name entity fails if the authenticated use is only having the `TAXONNAME.[CREATE,READ]` author... Andreas Kohlbecker
04:29 PM feature request #6999 (Resolved): RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity: Applied in changeset commit:cdm-vaadin|1a38cf2c10b574f4d0d752973060a56f0f68c9ff. Andreas Kohlbecker
03:53 PM feature request #7018 (Resolved): implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase: Applied in changeset commit:cdmlib|88249c56f555abbd8f9e8b83e2a336dd8a8027b9. Andreas Kohlbecker
03:50 PM feature request #7020 (New): Allow SpecimenOrObservationBaseVoter to make futher voting decision on base of multiple authorities: DerivedUnits and DerivationEvents can form graphs with multiple roots.
~~~
fuA -- duA
\
... Andreas Kohlbecker
01:17 PM feature request #7019 (Closed): sort import menu: ist es möglich, die zur Verfügung stehenden Importe noch ein bisschen zu sortieren?

Eine Sortierung könnte un... Katja Luther
12:48 PM feature request #6908 (Resolved): Migrate polytomous key module: added the menu entry Patrick Plitzner

10/16/2017

06:20 PM feature request #6921 (Resolved): Migrate data import views: oops, some of the menu item handlers where shifted in the wrong order
Now it should work Patrick Plitzner
01:59 PM feature request #6921: Migrate data import views: clicking on the tcs import menu item has no effect. Katja Luther
01:43 PM feature request #6921: Migrate data import views: for the taxonnavigator menu the entry for RIS points to the SDD import Katja Luther
01:41 PM feature request #6921 (Feedback): Migrate data import views: now there are different menu entries for the taxonnavigator and the main menu: in taxonnavigator there is Import Spec... Katja Luther
04:09 PM feature request #6974 (Resolved): improve the io wizards: Applied in changeset commit:taxeditor|273498506dd099b8d5b6c8b97a4dc6e10221f7df. Katja Luther
03:49 PM feature request #7018 (Closed): implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase: SpecimenOrObservationBase need to be protected by a SpecimenOrObservationBaseVoter which evaluates CRUD permissions ... Andreas Kohlbecker
03:47 PM feature request #7016 (Rejected): implement a CdmPermissionVoter for TypeDesignations: permissions for TypeDesignations are not really needed. It is completely sufficient to have permissions on `TaxonName... Andreas Kohlbecker
01:57 PM feature request #7008 (Feedback): Migrate export wizards: the jaxb export wizard and sdd export wizard has the next button activated, but there is no additional page any more.... Katja Luther
01:37 PM feature request #7008 (Resolved): Migrate export wizards: Katja Luther
12:50 PM feature request #7008 (Feedback): Migrate export wizards: Katja Luther
01:32 PM feature request #7006 (Closed): Migrate preferences: it takes quiet a long time to open the preferences, but it seems to work.
Katja Luther

10/15/2017

03:21 PM bug #7017 (New): Rendering of details view for common name description element take too long: Patrick Plitzner

10/13/2017

03:27 PM feature request #7016 (Rejected): implement a CdmPermissionVoter for TypeDesignations: TypeDesignations need to be protected by a TypeDesignationsVoter which evaluates CRUD permissions given to users or ... Andreas Kohlbecker
09:06 AM feature request #7015 (New): Migrate recent menu item: Patrick Plitzner

10/12/2017

03:13 PM feature request #6903 (In Progress): Requirements for checklisteditor of the German states: Andreas Müller

10/11/2017

04:03 PM feature request #6908: Migrate polytomous key module: Andreas Müller wrote:
> The view is still missing in the show view menu (should be in topmost group together with ta... Andreas Müller
03:40 PM feature request #6908 (Feedback): Migrate polytomous key module: The view is still missing in the show view menu (should be in topmost group together with taxon navigator which is on... Andreas Müller
03:47 PM feature request #7011: Migrate group authority editor: D&D also does not work for nodes in taxonnavigator, maybe this has to be migrated first. Katja Luther
03:32 PM feature request #7011 (Feedback): Migrate group authority editor: D&D does not yet work. E.g. from Tax Navigator.
Andreas Müller
02:48 PM feature request #6989 (Feedback): Migrate concept graph view: Andreas Müller
02:46 PM feature request #6989: Migrate concept graph view: No graph is shown on my machine. I tested on testserver/rem_conf_am => Testklass - Sabularia Small.
The view shows... Andreas Müller
02:32 PM feature request #6933 (Closed): Add possibility to export only families or other part of the tree in CDM light and DwC-A export: Andreas Müller
10:54 AM feature request #6569 (Closed): Remove unused application model from taxeditor.application: Patrick Plitzner
10:52 AM feature request #6569 (Resolved): Remove unused application model from taxeditor.application: Applied in changeset commit:taxeditor|fa8cce45a6f3b17b03bd7f50e3a5b3c0e9a1d54a. Patrick Plitzner
12:03 AM feature request #6815 (Closed): OriginalSource idNamespace + idInSource default separator should be whitespace: This seems to work Andreas Müller
12:02 AM bug #6982: OriginalSource idNamespace + idInSource separator must be configurable: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> >Regarding configurability: A simple default character would no... Andreas Müller

10/10/2017

04:19 PM feature request #7014 (Duplicate): Support for ORCID person ids in phycobank: [ORCID](https://orcid.org/) provides persistent digital identifier for persons. Phycobank should at least support but... Andreas Kohlbecker
11:03 AM bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree: This exception does not appear if it is called without the monitoring thread. As a workaround the monitoring thread i... Katja Luther
11:00 AM bug #7013 (Closed): NonUniqueObjectException for setSecundumReferenceForSubtree: The following exception occurs for SetSecundumReferenceForSubtree.
~~~ text
java.lang.IllegalStateException: or... Katja Luther

10/09/2017

04:26 PM feature request #7011 (Resolved): Migrate group authority editor: Applied in changeset commit:taxeditor|d0eb8b9f48b808de39dcee2cc0245b409ef24c9d. Patrick Plitzner
04:25 PM feature request #7011 (Closed): Migrate group authority editor: Patrick Plitzner
03:46 PM feature request #7010 (Closed): Adapt handlers for multiple selection in e4 views: First, investigate if it is important to propagate the selection in each part individually via ESelectionService.setS... Patrick Plitzner
03:29 PM feature request #7009 (Closed): Replace part descriptor IDs in open handler with AppModel constants: Patrick Plitzner
10:16 AM feature request #6933 (Resolved): Add possibility to export only families or other part of the tree in CDM light and DwC-A export: the two remaining issues are fixed with the last commit. Katja Luther

10/06/2017

04:34 PM feature request #7008 (Resolved): Migrate export wizards: Patrick Plitzner
03:18 PM feature request #7008 (Closed): Migrate export wizards: * ~~CDM light~~
* ~~CSV~~
* ~~CSV_NAME~~
* ~~CSV_PRINT~~
* ~~DwC-A~~
* ~~JAXB~~
* ~~SDD~~ Patrick Plitzner
01:51 PM feature request #7006 (Resolved): Migrate preferences: Patrick Plitzner
12:07 PM feature request #7007 (Rejected): Migrate IMemento functionality: Patrick:
"offensichtlich haben wir unsere Settings/Preferences/Mementos jetzt aktuell noch etwas mehr verteilt. Da... Patrick Plitzner

10/05/2017

03:16 PM feature request #7006 (Closed): Migrate preferences: This can be done with a copy of the plugin provided by OPCoach (https://github.com/opcoach/e4Preferences).
This mi... Patrick Plitzner
02:46 PM feature request #7005 (Resolved): Migrate import wizards: Patrick Plitzner
07:40 AM feature request #7005 (Closed): Migrate import wizards: * ~~BioCASE/GBIF~~
* ~~ABCD~~
* ~~Excel Distribution Data Update~~
* ~~Excel Normal Explicit Taxa~~
* ~~RIS Refer... Patrick Plitzner

10/04/2017

06:25 PM feature request #6921: Migrate data import views: For opening the import wizards I added an extra menu because these wizard do not use the org.eclipse.ui.importWizards... Patrick Plitzner
06:20 PM feature request #6921 (Resolved): Migrate data import views: Applied in changeset commit:taxeditor|1a7f5070bc2ce3588c7255c1ee412e00f1b74582. Patrick Plitzner
01:40 PM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view: works now Katja Luther
12:04 PM bug #7000 (Resolved): clicking in specimen details of bulk editor results in an empty details view: Applied in changeset commit:taxeditor|5221978cf52b633e3d5e2adf7055133536863903. Patrick Plitzner
09:36 AM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view: the details view of specimen bulk editor disappears when clicking on the scrollbar or in one of the fields Katja Luther
12:48 PM feature request #6902 (Resolved): Migrate molecular module: Patrick Plitzner
11:54 AM bug #7002: Delete of contig sequence not possible: Katja Luther wrote:
> we decided that it is not possible to delete media from media specimen and from other places w... Patrick Plitzner
11:39 AM bug #7002: Delete of contig sequence not possible: we decided that it is not possible to delete media from media specimen and from other places where they are directly ... Katja Luther
10:59 AM bug #7002 (New): Delete of contig sequence not possible: Deletion in specimen hierarchy editor is not possible because of the following message.
~~~
An object of eu.eta... Patrick Plitzner
11:51 AM bug #5430: P2 update of Taxonomic Editor bundled with JRE does not work: On windows the update fails with the following exception:
~~~
!ENTRY org.eclipse.equinox.p2.engine 4 4 2017-09-09... Patrick Plitzner
11:34 AM feature request #7004 (New): Adapt save option in specimen hierarchy editor to bulk editor: Andreas:
die erneute Suche im Specimen Tree Editor, nachdem man etwas editiert hat, erlaubt weiterhin nur Save ode... Patrick Plitzner
11:22 AM bug #7003 (Worksforme): endless loop with IllegalArgumentException when no active conversation is found: This happens sometimes as is related to the mix of e3 and e4 views.
If this happens you can only force quit the taxe... Patrick Plitzner
10:58 AM feature request #7001 (Closed): Show date and/or version-number on taxeditor download site: The date and/or version number of the taxeditor stable release to be downloaded from https://cybertaxonomy.eu/downloa... Fabian Reimeier

09/29/2017

02:31 PM feature request #6999 (Closed): RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity: Andreas Kohlbecker
01:52 PM bug #6998 (Feedback): Potential NPE with endless loop when switching type of description element in details view: the NPE is now fixed but the descriptionElement details view does not update after switching to textData.
closing th... Katja Luther
10:10 AM bug #6998 (Resolved): Potential NPE with endless loop when switching type of description element in details view: Fixed with commit:taxeditor|f789bc46f5744f4f59c9ff83e5f7ea5483ea3869 Patrick Plitzner
10:09 AM bug #6998 (Closed): Potential NPE with endless loop when switching type of description element in details view: Norbert:
folgender Bug:
ich lege eine neue Distribution in den Faktendaten an und ändere anschließend die Feldf... Patrick Plitzner
12:34 PM bug #6159: improve distribution editor in TaxEditor: now the details of the selected distribution are available in details view, the details of the distributions are disa... Katja Luther
10:39 AM bug #6994 (Resolved): phycobankID links only active when status is PUBLISHED: Applied in changeset commit:cdm-vaadin|677973fab639e9b0ae0edb6310fbeeb7066dbadb. Andreas Kohlbecker
10:39 AM bug #6995 (Resolved): Show phycobankIDs in Workingset editor: Applied in changeset commit:cdm-vaadin|677973fab639e9b0ae0edb6310fbeeb7066dbadb. Andreas Kohlbecker
08:52 AM feature request #6908 (Resolved): Migrate polytomous key module: Patrick Plitzner

09/28/2017

04:09 PM feature request #6997 (Closed): RegistrationUI: Show authenticated user in toolbar with option to logout: Andreas Kohlbecker
04:08 PM feature request #6997 (Resolved): RegistrationUI: Show authenticated user in toolbar with option to logout: Applied in changeset commit:cdm-vaadin|eca2b6b09654c7d2d20d2a93152ec92dd3948c59. Andreas Kohlbecker
10:22 AM feature request #6997 (Closed): RegistrationUI: Show authenticated user in toolbar with option to logout: Andreas Kohlbecker
10:12 AM bug #6987: LIE during name catalogue service call processing: this only can be reviewed after the release. Locally it worked as expected. Andreas Kohlbecker
10:11 AM bug #6987 (Resolved): LIE during name catalogue service call processing: Applied in changeset commit:cdmlib|3dcfb5ed8d6e9d4606308c1ed602ab1cecca72ca. Andreas Kohlbecker
10:04 AM bug #6995 (Closed): Show phycobankIDs in Workingset editor: The registration entries in the Workingset editor are missing the phycobank ID.
Currently the whole list of regist... Andreas Kohlbecker
09:59 AM bug #6994 (Closed): phycobankID links only active when status is PUBLISHED: The phycobankID links in the registration UI should not be active when the status differs from PUBLISHED Andreas Kohlbecker
08:38 AM task #6993 (Duplicate): Implement web service tests: Andreas Kohlbecker
08:33 AM task #6992 (New): Refactor and modernize REST web service API: The cdmlib-remote controllers need to be harmonized and updated. This is the master ticked that assembles all related... Andreas Kohlbecker
08:04 AM bug #6991 (Worksforme): Exception while editing States in State term editor: ~~~

!ENTRY eu.taxeditor 4 0 2017-09-27 12:10:39.866
!MESSAGE Could not get conversation for AbstractForm... Patrick Plitzner

09/27/2017

07:09 PM feature request #6990 (Resolved): Migrate search result view: Applied in changeset commit:taxeditor|2ff53a7f8a8ec9eb8c5d4c8fb6b576d9ffb2f9f8. Patrick Plitzner
06:48 PM feature request #6990 (Closed): Migrate search result view: Patrick Plitzner
03:26 PM feature request #6985 (Resolved): display Registration metadata in footnotes: Applied in changeset commit:cdm-dataportal|eaff53f7fd5596477d627d0f827d0ca0f485c49e. Andreas Kohlbecker
01:36 PM feature request #6989 (Resolved): Migrate concept graph view: Applied in changeset commit:taxeditor|bb101b3b0c496ef690b379cacd5819592518e4a7. Patrick Plitzner
10:56 AM feature request #6989 (Closed): Migrate concept graph view: Patrick Plitzner
11:58 AM feature request #6812: Improve TaxEditor download site: In the standup today we decided to place the beautiful download page at https://cybertaxonomy.eu/taxeditor/download ... Andreas Kohlbecker
10:13 AM feature request #6812: Improve TaxEditor download site: If I remember correctly, the proposed download should be highlighted. But when I go onto the website (Linux 64bit) my... Patrick Plitzner
09:31 AM feature request #6812: Improve TaxEditor download site: Walter:
Aber die neue Download-Liste sieht ja schick aus! Aber leider kann ich jetzt nicht mehr das Datum der Dat... Andreas Müller
10:55 AM feature request #6595 (Resolved): Migrate name editor: Patrick Plitzner

09/22/2017

09:42 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export: Now the "Export selected subtree" is selected by default if started from a taxon node. But this should disable(make i... Andreas Müller
09:38 PM bug #6789 (Feedback): Remaining issues for misapplied name details view: jetzt gibt es noch ein Problem mit den Misapplied Names. Wenn ich wie (im attachement) „Mein zoow“ öffne, welches ein... Andreas Müller
07:07 PM bug #3866: Link Taxon Editor name to the taxon in the taxon navigator: I tested with a new opened E+M database for Calendula arvensis which has about 10 ancestors. Andreas Müller
07:06 PM bug #3866 (Closed): Link Taxon Editor name to the taxon in the taxon navigator: This really works. Great!
Only minor issue: the performance might be slow especially when opening a taxon with a l... Andreas Müller
06:38 PM feature request #4155: Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree: The blocking ticket is now fixed so we can now start implementing this Andreas Müller
06:36 PM feature request #3740: Allow recursively setting the publish bit for TaxonBase: Please review Andreas Müller
06:30 PM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor: There is also a lot of space between label "New secundum reference" and the text box for the secundum. Can we minimiz... Andreas Müller
06:12 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor: If the dialog box width is reduced (almost to minimum) the last 2 checkbox lines disappear. Increasing width does not... Andreas Müller
05:01 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor: Andreas Müller wrote:
> So do I understand correctly that a ClassificationVoter does not (yet) exist. If yes than we... Andreas Kohlbecker
04:51 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor: So do I understand correctly that a ClassificationVoter does not (yet) exist. If yes than we need of course to store ... Andreas Müller
04:35 PM bug #6894 (Feedback): NPE when trying drag&drop a Classification to the GrantedAuthority editor: Andreas Kohlbecker
04:35 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor: The drag and drop action is no longer causing a NPE but the resulting authority is not correct. The Autority which is... Andreas Kohlbecker
04:54 PM feature request #6911 (Resolved): Migrate concept view: Andreas Müller
03:12 PM feature request #6911: Migrate concept view: Andreas Müller wrote:
> Ok, so we will handle later. But what is about the exception? Also later or can this be fixe... Patrick Plitzner
03:05 PM feature request #6911: Migrate concept view: Ok, so we will handle later. But what is about the exception? Also later or can this be fixed? Andreas Müller
01:41 PM feature request #6911: Migrate concept view: Andreas Müller wrote:
> This is still not fully fixed. Both views are emptied but the details view immediately is re... Patrick Plitzner
12:42 PM feature request #6911: Migrate concept view: Also an exception may appear if you open the name editor, concept view and detail as above, and additionally you have... Andreas Müller
12:40 PM feature request #6911 (Feedback): Migrate concept view: This is still not fully fixed. Both views are emptied but the details view immediately is refilled (looks like the em... Andreas Müller
10:03 AM feature request #6911 (Resolved): Migrate concept view: Patrick Plitzner
09:46 AM feature request #6911: Migrate concept view: No taxon is open, I open a taxon with concept relations, the relations are shown in the concept view. When clicking o... Andreas Müller
04:36 PM bug #6978: NPE in DefaultReferenceCacheStrategy: See similar issue #6979#note-1 Andreas Müller
04:24 PM bug #6978: NPE in DefaultReferenceCacheStrategy: This is not necessarily a bug
~~~ java
protected static boolean isNomRef(ReferenceType type){
switc... Andreas Müller
03:31 PM bug #6978 (Worksforme): NPE in DefaultReferenceCacheStrategy: OAIPMH Service call broken by a bug in in the DefaultReferenceCacheStrategy:

http://test.e-taxonomy.eu/cdmserve... Andreas Kohlbecker
04:36 PM bug #6979: database inconsitent in roteliste_standardliste on test server?: This is most likely a duplicate for #6978. See my comment #6978#note-1
The problem again is this part
~~~
at... Andreas Müller
03:35 PM bug #6979 (New): database inconsitent in roteliste_standardliste on test server?: http://test.e-taxonomy.eu/cdmserver/roteliste_standardliste/taxon/oai?verb=ListIdentifiers&metadataPrefix=oai_dc&set=... Andreas Kohlbecker
04:01 PM bug #6683 (Closed): Use best quality media representation in image viewer on media page: This also seems to work I tested yesterday together with #6684 Andreas Müller
03:59 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element: It seems to be available only for "Name Approbation". But it should be available for all attributes which are not ava... Andreas Müller
01:38 PM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element: Katja Luther
01:38 PM feature request #6693: Implement missing nomenclatural codes for name detail element: Andreas Müller wrote:
> One more issue, which is a bit critical: we currently do have a hard validation if a name co... Katja Luther
10:02 AM feature request #6693: Implement missing nomenclatural codes for name detail element: Andreas Müller wrote:
> One more issue, which is a bit critical: we currently do have a hard validation if a name co... Katja Luther
03:57 PM feature request #6856 (Closed): Add group Admin to standard FirstDataInserter: Andreas Kohlbecker
03:55 PM feature request #6852 (Closed): GrantedAuthorities and permission Groups for Phycobank: Andreas Kohlbecker
03:49 PM feature request #6964 (Closed): Registration webservices implemented: Andreas Kohlbecker
03:45 PM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode: Even if duplicate issue is closed now this issue here can not yet be closed since its solution requires additional wo... Andreas Kohlbecker
03:44 PM bug #6948 (Closed): OAIPMH service broken by NPE with verb=ListIdentifiers & set=taxon: The NPE is suppressed by the fix the duplicate issue can not yet be closed since the its solution requires additional... Andreas Kohlbecker
03:41 PM bug #6980 (New): OAIPMH service seems to work onyl if LSIDs are present: http://test.e-taxonomy.eu/cdmserver/iapt/taxon/oai?metadataPrefix=oai_dc?set=synonym?verb=ListIdentifiers shows no id... Andreas Kohlbecker
03:26 PM bug #6836 (Closed): Swagger documentation for OAIPMH broken: confirming that this is fixed, tested at edit-test Andreas Kohlbecker
03:24 PM bug #6730: Deleting media leads to inconsistent data: Sorry if I have even one more issue. Looking at the code I wonder if the service.update(updatedObject) command is rea... Andreas Müller
03:20 PM bug #6730: Deleting media leads to inconsistent data: By the way there are a couple of other places where Media is used. E.g. DefinedTermBase.getMedia, AmplificationResult... Andreas Müller
03:13 PM bug #6730: Deleting media leads to inconsistent data: the refactored code looks fine.
you are right a media specimen without media does not make sense. I don't know any... Katja Luther
03:00 PM bug #6730: Deleting media leads to inconsistent data: While doing the refactoring I realized that I don't think we should allow Media being removed from MediaSpecimen. A M... Andreas Müller
03:00 PM bug #6730 (Feedback): Deleting media leads to inconsistent data: This looks good now.
However, I tried to further simplify/unify the code and to set updatedObject always to null f... Andreas Müller
10:07 AM bug #6730 (Resolved): Deleting media leads to inconsistent data: Katja Luther
10:07 AM bug #6730: Deleting media leads to inconsistent data: Andreas Müller wrote:
> I did some further code cleaning (d8f50ab8), please check if you think this is correct.
>
... Katja Luther
03:23 PM bug #6976: improve preferred media calculation algorithm in dataportal: Andreas Müller wrote:
> Andreas Müller wrote:
> > to me this looks like a duplicate for #6976
>
> ... ähh, for #... Andreas Kohlbecker
03:11 PM bug #6976: improve preferred media calculation algorithm in dataportal: Andreas Müller wrote:
> to me this looks like a duplicate for #6976
... ähh, for #6975 Andreas Müller
03:11 PM bug #6976: improve preferred media calculation algorithm in dataportal: to me this looks like a duplicate for #6976 Andreas Müller
02:54 PM bug #6976 (New): improve preferred media calculation algorithm in dataportal: as stated in #6969#node_7 the algorithm to calculate the preferred media representation should prefer bigger image ov... Andreas Kohlbecker
02:59 PM feature request #6977 (Rejected): check TreeNodeDropAdapterAssistant and TreeNodeDropAdapter if both are needed: What I do not understand is the difference between TreeNodeDropAdapterAssistant and TreeNodeDropAdapter.
They look... Katja Luther
02:58 PM bug #6961 (Closed): Drag&Drop for taxon nodes throws NPE when hovering Classification: works now.
I will check the two classes (create a new ticket and close this one) Katja Luther
02:53 PM bug #6969 (Closed): Use media representation which best fits the available size for taxon profile picture: Ok, agreed, I created a new ticket for the improvement of the calculation: #6975 and I am closing this ticket by now. Andreas Kohlbecker
12:16 PM bug #6969 (Feedback): Use media representation which best fits the available size for taxon profile picture: Generally the switch seems to work.
Only the algorithm for me should decide earlier to take a larger image.
I p... Andreas Müller
10:40 AM bug #6969 (Resolved): Use media representation which best fits the available size for taxon profile picture: Applied in changeset commit:cdm-dataportal|02faa0870abc69cd6fe2fd7ddc8ddd6f684c3d97. Andreas Kohlbecker
02:52 PM bug #6975 (New): improve preferred media calculation algorithm in cdmlib: as stated in #6969#node_7 the algorithm to calculate the preferred media representation should prefer bigger image ov... Andreas Kohlbecker
02:48 PM feature request #6974 (Resolved): improve the io wizards: die Export-Assistenten (CDM light, DwC-A, …) haben derzeit folgenden Workflow:
1) Auswahl Export-Typ
2) Konfigura... Katja Luther
01:44 PM feature request #6922 (Closed): Migrate term editor: Patrick Plitzner
12:33 PM feature request #6922 (Feedback): Migrate term editor: Now, after reconnect the details view and supplemental data is emptied but when clicking on the empty details view th... Andreas Müller
10:53 AM feature request #6922 (Resolved): Migrate term editor: Patrick Plitzner
01:44 PM bug #6973 (Closed): Refreshing details and supplemental view: Copied from #6922:
If one adds a new term and then the label of this term is changed, the new label is not reflect... Patrick Plitzner
01:40 PM bug #6799 (Closed): Implement progress monitor for DwC A export: Andreas Müller
11:36 AM bug #6799 (Resolved): Implement progress monitor for DwC A export: Andreas Müller
10:15 AM bug #6799: Implement progress monitor for DwC A export: the % works now, too. Katja Luther
01:34 PM bug #6972 (New): Editing the same FieldUnit in specimen bulk and tree editor behaves unusual: Andreas M.:
"ich habe das Ticket #6597 ja gerade geschlossen. Dennoch ist mir dabei ein seltsames Phänomen aufge... Patrick Plitzner
12:35 PM feature request #6912 (Closed): Migrate datasources view: Andreas Müller
08:47 AM feature request #6912 (Resolved): Migrate datasources view: Patrick Plitzner
11:15 AM feature request #6957 (Closed): Implement cache strategy for viral names: as a first version it looks fine. Katja Luther
10:58 AM bug #6971 (New): Collect all remaining appearances of multiple representation exceptions since 4.10: Katja Luther
10:56 AM bug #6657 (Worksforme): Reproducable "multiple representations" exception for polytomous keys: this "reproducable" multiple representation exception is not reproducable anymore. Close this ticket and create a new... Katja Luther
10:35 AM bug #6970 (Closed): MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaRepresentations over full sized: portal/taxon/{uuid}/media service only delivers a filtered media object
which only contains the thumbnail repres... Andreas Kohlbecker
10:17 AM bug #6958 (Closed): The description of the referencing objects view is missing in e4: works fine Katja Luther

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