Activity

From 09/17/2017 to 10/16/2017

10/16/2017

06:20 PM feature request #6921 (Resolved): Migrate data import views: oops, some of the menu item handlers where shifted in the wrong order
Now it should work Patrick Plitzner
01:59 PM feature request #6921: Migrate data import views: clicking on the tcs import menu item has no effect. Katja Luther
01:43 PM feature request #6921: Migrate data import views: for the taxonnavigator menu the entry for RIS points to the SDD import Katja Luther
01:41 PM feature request #6921 (Feedback): Migrate data import views: now there are different menu entries for the taxonnavigator and the main menu: in taxonnavigator there is Import Spec... Katja Luther
04:09 PM feature request #6974 (Resolved): improve the io wizards: Applied in changeset commit:taxeditor|273498506dd099b8d5b6c8b97a4dc6e10221f7df. Katja Luther
03:49 PM feature request #7018 (Closed): implement a CdmPermissionVoter and default authorities for SpecimenOrObservationBase: SpecimenOrObservationBase need to be protected by a SpecimenOrObservationBaseVoter which evaluates CRUD permissions ... Andreas Kohlbecker
03:47 PM feature request #7016 (Rejected): implement a CdmPermissionVoter for TypeDesignations: permissions for TypeDesignations are not really needed. It is completely sufficient to have permissions on `TaxonName... Andreas Kohlbecker
01:57 PM feature request #7008 (Feedback): Migrate export wizards: the jaxb export wizard and sdd export wizard has the next button activated, but there is no additional page any more.... Katja Luther
01:37 PM feature request #7008 (Resolved): Migrate export wizards: Katja Luther
12:50 PM feature request #7008 (Feedback): Migrate export wizards: Katja Luther
01:32 PM feature request #7006 (Closed): Migrate preferences: it takes quiet a long time to open the preferences, but it seems to work.
Katja Luther

10/15/2017

03:21 PM bug #7017 (New): Rendering of details view for common name description element take too long: Patrick Plitzner

10/13/2017

03:27 PM feature request #7016 (Rejected): implement a CdmPermissionVoter for TypeDesignations: TypeDesignations need to be protected by a TypeDesignationsVoter which evaluates CRUD permissions given to users or ... Andreas Kohlbecker
09:06 AM feature request #7015 (New): Migrate recent menu item: Patrick Plitzner

10/12/2017

03:13 PM feature request #6903 (In Progress): Requirements for checklisteditor of the German states: Andreas Müller

10/11/2017

04:03 PM feature request #6908: Migrate polytomous key module: Andreas Müller wrote:
> The view is still missing in the show view menu (should be in topmost group together with ta... Andreas Müller
03:40 PM feature request #6908 (Feedback): Migrate polytomous key module: The view is still missing in the show view menu (should be in topmost group together with taxon navigator which is on... Andreas Müller
03:47 PM feature request #7011: Migrate group authority editor: D&D also does not work for nodes in taxonnavigator, maybe this has to be migrated first. Katja Luther
03:32 PM feature request #7011 (Feedback): Migrate group authority editor: D&D does not yet work. E.g. from Tax Navigator.
Andreas Müller
02:48 PM feature request #6989 (Feedback): Migrate concept graph view: Andreas Müller
02:46 PM feature request #6989: Migrate concept graph view: No graph is shown on my machine. I tested on testserver/rem_conf_am => Testklass - Sabularia Small.
The view shows... Andreas Müller
02:32 PM feature request #6933 (Closed): Add possibility to export only families or other part of the tree in CDM light and DwC-A export: Andreas Müller
10:54 AM feature request #6569 (Closed): Remove unused application model from taxeditor.application: Patrick Plitzner
10:52 AM feature request #6569 (Resolved): Remove unused application model from taxeditor.application: Applied in changeset commit:taxeditor|fa8cce45a6f3b17b03bd7f50e3a5b3c0e9a1d54a. Patrick Plitzner
12:03 AM feature request #6815 (Closed): OriginalSource idNamespace + idInSource default separator should be whitespace: This seems to work Andreas Müller
12:02 AM bug #6982: OriginalSource idNamespace + idInSource separator must be configurable: Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> >Regarding configurability: A simple default character would no... Andreas Müller

10/10/2017

04:19 PM feature request #7014 (Duplicate): Support for ORCID person ids in phycobank: [ORCID](https://orcid.org/) provides persistent digital identifier for persons. Phycobank should at least support but... Andreas Kohlbecker
11:03 AM bug #7013: NonUniqueObjectException for setSecundumReferenceForSubtree: This exception does not appear if it is called without the monitoring thread. As a workaround the monitoring thread i... Katja Luther
11:00 AM bug #7013 (Closed): NonUniqueObjectException for setSecundumReferenceForSubtree: The following exception occurs for SetSecundumReferenceForSubtree.
~~~ text
java.lang.IllegalStateException: or... Katja Luther

10/09/2017

04:26 PM feature request #7011 (Resolved): Migrate group authority editor: Applied in changeset commit:taxeditor|d0eb8b9f48b808de39dcee2cc0245b409ef24c9d. Patrick Plitzner
04:25 PM feature request #7011 (Closed): Migrate group authority editor: Patrick Plitzner
03:46 PM feature request #7010 (Closed): Adapt handlers for multiple selection in e4 views: First, investigate if it is important to propagate the selection in each part individually via ESelectionService.setS... Patrick Plitzner
03:29 PM feature request #7009 (Closed): Replace part descriptor IDs in open handler with AppModel constants: Patrick Plitzner
10:16 AM feature request #6933 (Resolved): Add possibility to export only families or other part of the tree in CDM light and DwC-A export: the two remaining issues are fixed with the last commit. Katja Luther

10/06/2017

04:34 PM feature request #7008 (Resolved): Migrate export wizards: Patrick Plitzner
03:18 PM feature request #7008 (Closed): Migrate export wizards: * ~~CDM light~~
* ~~CSV~~
* ~~CSV_NAME~~
* ~~CSV_PRINT~~
* ~~DwC-A~~
* ~~JAXB~~
* ~~SDD~~ Patrick Plitzner
01:51 PM feature request #7006 (Resolved): Migrate preferences: Patrick Plitzner
12:07 PM feature request #7007 (Rejected): Migrate IMemento functionality: Patrick:
"offensichtlich haben wir unsere Settings/Preferences/Mementos jetzt aktuell noch etwas mehr verteilt. Da... Patrick Plitzner

10/05/2017

03:16 PM feature request #7006 (Closed): Migrate preferences: This can be done with a copy of the plugin provided by OPCoach (https://github.com/opcoach/e4Preferences).
This mi... Patrick Plitzner
02:46 PM feature request #7005 (Resolved): Migrate import wizards: Patrick Plitzner
07:40 AM feature request #7005 (Closed): Migrate import wizards: * ~~BioCASE/GBIF~~
* ~~ABCD~~
* ~~Excel Distribution Data Update~~
* ~~Excel Normal Explicit Taxa~~
* ~~RIS Refer... Patrick Plitzner

10/04/2017

06:25 PM feature request #6921: Migrate data import views: For opening the import wizards I added an extra menu because these wizard do not use the org.eclipse.ui.importWizards... Patrick Plitzner
06:20 PM feature request #6921 (Resolved): Migrate data import views: Applied in changeset commit:taxeditor|1a7f5070bc2ce3588c7255c1ee412e00f1b74582. Patrick Plitzner
01:40 PM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view: works now Katja Luther
12:04 PM bug #7000 (Resolved): clicking in specimen details of bulk editor results in an empty details view: Applied in changeset commit:taxeditor|5221978cf52b633e3d5e2adf7055133536863903. Patrick Plitzner
09:36 AM bug #7000 (Closed): clicking in specimen details of bulk editor results in an empty details view: the details view of specimen bulk editor disappears when clicking on the scrollbar or in one of the fields Katja Luther
12:48 PM feature request #6902 (Resolved): Migrate molecular module: Patrick Plitzner
11:54 AM bug #7002: Delete of contig sequence not possible: Katja Luther wrote:
> we decided that it is not possible to delete media from media specimen and from other places w... Patrick Plitzner
11:39 AM bug #7002: Delete of contig sequence not possible: we decided that it is not possible to delete media from media specimen and from other places where they are directly ... Katja Luther
10:59 AM bug #7002 (New): Delete of contig sequence not possible: Deletion in specimen hierarchy editor is not possible because of the following message.
~~~
An object of eu.eta... Patrick Plitzner
11:51 AM bug #5430: P2 update of Taxonomic Editor bundled with JRE does not work: On windows the update fails with the following exception:
~~~
!ENTRY org.eclipse.equinox.p2.engine 4 4 2017-09-09... Patrick Plitzner
11:34 AM feature request #7004 (New): Adapt save option in specimen hierarchy editor to bulk editor: Andreas:
die erneute Suche im Specimen Tree Editor, nachdem man etwas editiert hat, erlaubt weiterhin nur Save ode... Patrick Plitzner
11:22 AM bug #7003 (Worksforme): endless loop with IllegalArgumentException when no active conversation is found: This happens sometimes as is related to the mix of e3 and e4 views.
If this happens you can only force quit the taxe... Patrick Plitzner
10:58 AM feature request #7001 (Closed): Show date and/or version-number on taxeditor download site: The date and/or version number of the taxeditor stable release to be downloaded from https://cybertaxonomy.eu/downloa... Fabian Reimeier

09/29/2017

02:31 PM feature request #6999 (Closed): RegistrationUI: Enable, disable editor buttons according to the users permission to edit or delete the according cdm entity: Andreas Kohlbecker
01:52 PM bug #6998 (Feedback): Potential NPE with endless loop when switching type of description element in details view: the NPE is now fixed but the descriptionElement details view does not update after switching to textData.
closing th... Katja Luther
10:10 AM bug #6998 (Resolved): Potential NPE with endless loop when switching type of description element in details view: Fixed with commit:taxeditor|f789bc46f5744f4f59c9ff83e5f7ea5483ea3869 Patrick Plitzner
10:09 AM bug #6998 (Closed): Potential NPE with endless loop when switching type of description element in details view: Norbert:
folgender Bug:
ich lege eine neue Distribution in den Faktendaten an und ändere anschließend die Feldf... Patrick Plitzner
12:34 PM bug #6159: improve distribution editor in TaxEditor: now the details of the selected distribution are available in details view, the details of the distributions are disa... Katja Luther
10:39 AM bug #6994 (Resolved): phycobankID links only active when status is PUBLISHED: Applied in changeset commit:cdm-vaadin|677973fab639e9b0ae0edb6310fbeeb7066dbadb. Andreas Kohlbecker
10:39 AM bug #6995 (Resolved): Show phycobankIDs in Workingset editor: Applied in changeset commit:cdm-vaadin|677973fab639e9b0ae0edb6310fbeeb7066dbadb. Andreas Kohlbecker
08:52 AM feature request #6908 (Resolved): Migrate polytomous key module: Patrick Plitzner

09/28/2017

04:09 PM feature request #6997 (Closed): RegistrationUI: Show authenticated user in toolbar with option to logout: Andreas Kohlbecker
04:08 PM feature request #6997 (Resolved): RegistrationUI: Show authenticated user in toolbar with option to logout: Applied in changeset commit:cdm-vaadin|eca2b6b09654c7d2d20d2a93152ec92dd3948c59. Andreas Kohlbecker
10:22 AM feature request #6997 (Closed): RegistrationUI: Show authenticated user in toolbar with option to logout: Andreas Kohlbecker
10:12 AM bug #6987: LIE during name catalogue service call processing: this only can be reviewed after the release. Locally it worked as expected. Andreas Kohlbecker
10:11 AM bug #6987 (Resolved): LIE during name catalogue service call processing: Applied in changeset commit:cdmlib|3dcfb5ed8d6e9d4606308c1ed602ab1cecca72ca. Andreas Kohlbecker
10:04 AM bug #6995 (Closed): Show phycobankIDs in Workingset editor: The registration entries in the Workingset editor are missing the phycobank ID.
Currently the whole list of regist... Andreas Kohlbecker
09:59 AM bug #6994 (Closed): phycobankID links only active when status is PUBLISHED: The phycobankID links in the registration UI should not be active when the status differs from PUBLISHED Andreas Kohlbecker
08:38 AM task #6993 (Duplicate): Implement web service tests: Andreas Kohlbecker
08:33 AM task #6992 (New): Refactor and modernize REST web service API: The cdmlib-remote controllers need to be harmonized and updated. This is the master ticked that assembles all related... Andreas Kohlbecker
08:04 AM bug #6991 (Worksforme): Exception while editing States in State term editor: ~~~

!ENTRY eu.taxeditor 4 0 2017-09-27 12:10:39.866
!MESSAGE Could not get conversation for AbstractForm... Patrick Plitzner

09/27/2017

07:09 PM feature request #6990 (Resolved): Migrate search result view: Applied in changeset commit:taxeditor|2ff53a7f8a8ec9eb8c5d4c8fb6b576d9ffb2f9f8. Patrick Plitzner
06:48 PM feature request #6990 (Closed): Migrate search result view: Patrick Plitzner
03:26 PM feature request #6985 (Resolved): display Registration metadata in footnotes: Applied in changeset commit:cdm-dataportal|eaff53f7fd5596477d627d0f827d0ca0f485c49e. Andreas Kohlbecker
01:36 PM feature request #6989 (Resolved): Migrate concept graph view: Applied in changeset commit:taxeditor|bb101b3b0c496ef690b379cacd5819592518e4a7. Patrick Plitzner
10:56 AM feature request #6989 (Closed): Migrate concept graph view: Patrick Plitzner
11:58 AM feature request #6812: Improve TaxEditor download site: In the standup today we decided to place the beautiful download page at https://cybertaxonomy.eu/taxeditor/download ... Andreas Kohlbecker
10:13 AM feature request #6812: Improve TaxEditor download site: If I remember correctly, the proposed download should be highlighted. But when I go onto the website (Linux 64bit) my... Patrick Plitzner
09:31 AM feature request #6812: Improve TaxEditor download site: Walter:
Aber die neue Download-Liste sieht ja schick aus! Aber leider kann ich jetzt nicht mehr das Datum der Dat... Andreas Müller
10:55 AM feature request #6595 (Resolved): Migrate name editor: Patrick Plitzner

09/22/2017

09:42 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export: Now the "Export selected subtree" is selected by default if started from a taxon node. But this should disable(make i... Andreas Müller
09:38 PM bug #6789 (Feedback): Remaining issues for misapplied name details view: jetzt gibt es noch ein Problem mit den Misapplied Names. Wenn ich wie (im attachement) „Mein zoow“ öffne, welches ein... Andreas Müller
07:07 PM bug #3866: Link Taxon Editor name to the taxon in the taxon navigator: I tested with a new opened E+M database for Calendula arvensis which has about 10 ancestors. Andreas Müller
07:06 PM bug #3866 (Closed): Link Taxon Editor name to the taxon in the taxon navigator: This really works. Great!
Only minor issue: the performance might be slow especially when opening a taxon with a l... Andreas Müller
06:38 PM feature request #4155: Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree: The blocking ticket is now fixed so we can now start implementing this Andreas Müller
06:36 PM feature request #3740: Allow recursively setting the publish bit for TaxonBase: Please review Andreas Müller
06:30 PM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor: There is also a lot of space between label "New secundum reference" and the text box for the secundum. Can we minimiz... Andreas Müller
06:12 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor: If the dialog box width is reduced (almost to minimum) the last 2 checkbox lines disappear. Increasing width does not... Andreas Müller
05:01 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor: Andreas Müller wrote:
> So do I understand correctly that a ClassificationVoter does not (yet) exist. If yes than we... Andreas Kohlbecker
04:51 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor: So do I understand correctly that a ClassificationVoter does not (yet) exist. If yes than we need of course to store ... Andreas Müller
04:35 PM bug #6894 (Feedback): NPE when trying drag&drop a Classification to the GrantedAuthority editor: Andreas Kohlbecker
04:35 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor: The drag and drop action is no longer causing a NPE but the resulting authority is not correct. The Autority which is... Andreas Kohlbecker
04:54 PM feature request #6911 (Resolved): Migrate concept view: Andreas Müller
03:12 PM feature request #6911: Migrate concept view: Andreas Müller wrote:
> Ok, so we will handle later. But what is about the exception? Also later or can this be fixe... Patrick Plitzner
03:05 PM feature request #6911: Migrate concept view: Ok, so we will handle later. But what is about the exception? Also later or can this be fixed? Andreas Müller
01:41 PM feature request #6911: Migrate concept view: Andreas Müller wrote:
> This is still not fully fixed. Both views are emptied but the details view immediately is re... Patrick Plitzner
12:42 PM feature request #6911: Migrate concept view: Also an exception may appear if you open the name editor, concept view and detail as above, and additionally you have... Andreas Müller
12:40 PM feature request #6911 (Feedback): Migrate concept view: This is still not fully fixed. Both views are emptied but the details view immediately is refilled (looks like the em... Andreas Müller
10:03 AM feature request #6911 (Resolved): Migrate concept view: Patrick Plitzner
09:46 AM feature request #6911: Migrate concept view: No taxon is open, I open a taxon with concept relations, the relations are shown in the concept view. When clicking o... Andreas Müller
04:36 PM bug #6978: NPE in DefaultReferenceCacheStrategy: See similar issue #6979#note-1 Andreas Müller
04:24 PM bug #6978: NPE in DefaultReferenceCacheStrategy: This is not necessarily a bug
~~~ java
protected static boolean isNomRef(ReferenceType type){
switc... Andreas Müller
03:31 PM bug #6978 (Worksforme): NPE in DefaultReferenceCacheStrategy: OAIPMH Service call broken by a bug in in the DefaultReferenceCacheStrategy:

http://test.e-taxonomy.eu/cdmserve... Andreas Kohlbecker
04:36 PM bug #6979: database inconsitent in roteliste_standardliste on test server?: This is most likely a duplicate for #6978. See my comment #6978#note-1
The problem again is this part
~~~
at... Andreas Müller
03:35 PM bug #6979 (New): database inconsitent in roteliste_standardliste on test server?: http://test.e-taxonomy.eu/cdmserver/roteliste_standardliste/taxon/oai?verb=ListIdentifiers&metadataPrefix=oai_dc&set=... Andreas Kohlbecker
04:01 PM bug #6683 (Closed): Use best quality media representation in image viewer on media page: This also seems to work I tested yesterday together with #6684 Andreas Müller
03:59 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element: It seems to be available only for "Name Approbation". But it should be available for all attributes which are not ava... Andreas Müller
01:38 PM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element: Katja Luther
01:38 PM feature request #6693: Implement missing nomenclatural codes for name detail element: Andreas Müller wrote:
> One more issue, which is a bit critical: we currently do have a hard validation if a name co... Katja Luther
10:02 AM feature request #6693: Implement missing nomenclatural codes for name detail element: Andreas Müller wrote:
> One more issue, which is a bit critical: we currently do have a hard validation if a name co... Katja Luther
03:57 PM feature request #6856 (Closed): Add group Admin to standard FirstDataInserter: Andreas Kohlbecker
03:55 PM feature request #6852 (Closed): GrantedAuthorities and permission Groups for Phycobank: Andreas Kohlbecker
03:49 PM feature request #6964 (Closed): Registration webservices implemented: Andreas Kohlbecker
03:45 PM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode: Even if duplicate issue is closed now this issue here can not yet be closed since its solution requires additional wo... Andreas Kohlbecker
03:44 PM bug #6948 (Closed): OAIPMH service broken by NPE with verb=ListIdentifiers & set=taxon: The NPE is suppressed by the fix the duplicate issue can not yet be closed since the its solution requires additional... Andreas Kohlbecker
03:41 PM bug #6980 (New): OAIPMH service seems to work onyl if LSIDs are present: http://test.e-taxonomy.eu/cdmserver/iapt/taxon/oai?metadataPrefix=oai_dc?set=synonym?verb=ListIdentifiers shows no id... Andreas Kohlbecker
03:26 PM bug #6836 (Closed): Swagger documentation for OAIPMH broken: confirming that this is fixed, tested at edit-test Andreas Kohlbecker
03:24 PM bug #6730: Deleting media leads to inconsistent data: Sorry if I have even one more issue. Looking at the code I wonder if the service.update(updatedObject) command is rea... Andreas Müller
03:20 PM bug #6730: Deleting media leads to inconsistent data: By the way there are a couple of other places where Media is used. E.g. DefinedTermBase.getMedia, AmplificationResult... Andreas Müller
03:13 PM bug #6730: Deleting media leads to inconsistent data: the refactored code looks fine.
you are right a media specimen without media does not make sense. I don't know any... Katja Luther
03:00 PM bug #6730: Deleting media leads to inconsistent data: While doing the refactoring I realized that I don't think we should allow Media being removed from MediaSpecimen. A M... Andreas Müller
03:00 PM bug #6730 (Feedback): Deleting media leads to inconsistent data: This looks good now.
However, I tried to further simplify/unify the code and to set updatedObject always to null f... Andreas Müller
10:07 AM bug #6730 (Resolved): Deleting media leads to inconsistent data: Katja Luther
10:07 AM bug #6730: Deleting media leads to inconsistent data: Andreas Müller wrote:
> I did some further code cleaning (d8f50ab8), please check if you think this is correct.
>
... Katja Luther
03:23 PM bug #6976: improve preferred media calculation algorithm in dataportal: Andreas Müller wrote:
> Andreas Müller wrote:
> > to me this looks like a duplicate for #6976
>
> ... ähh, for #... Andreas Kohlbecker
03:11 PM bug #6976: improve preferred media calculation algorithm in dataportal: Andreas Müller wrote:
> to me this looks like a duplicate for #6976
... ähh, for #6975 Andreas Müller
03:11 PM bug #6976: improve preferred media calculation algorithm in dataportal: to me this looks like a duplicate for #6976 Andreas Müller
02:54 PM bug #6976 (New): improve preferred media calculation algorithm in dataportal: as stated in #6969#node_7 the algorithm to calculate the preferred media representation should prefer bigger image ov... Andreas Kohlbecker
02:59 PM feature request #6977 (Rejected): check TreeNodeDropAdapterAssistant and TreeNodeDropAdapter if both are needed: What I do not understand is the difference between TreeNodeDropAdapterAssistant and TreeNodeDropAdapter.
They look... Katja Luther
02:58 PM bug #6961 (Closed): Drag&Drop for taxon nodes throws NPE when hovering Classification: works now.
I will check the two classes (create a new ticket and close this one) Katja Luther
02:53 PM bug #6969 (Closed): Use media representation which best fits the available size for taxon profile picture: Ok, agreed, I created a new ticket for the improvement of the calculation: #6975 and I am closing this ticket by now. Andreas Kohlbecker
12:16 PM bug #6969 (Feedback): Use media representation which best fits the available size for taxon profile picture: Generally the switch seems to work.
Only the algorithm for me should decide earlier to take a larger image.
I p... Andreas Müller
10:40 AM bug #6969 (Resolved): Use media representation which best fits the available size for taxon profile picture: Applied in changeset commit:cdm-dataportal|02faa0870abc69cd6fe2fd7ddc8ddd6f684c3d97. Andreas Kohlbecker
02:52 PM bug #6975 (New): improve preferred media calculation algorithm in cdmlib: as stated in #6969#node_7 the algorithm to calculate the preferred media representation should prefer bigger image ov... Andreas Kohlbecker
02:48 PM feature request #6974 (Resolved): improve the io wizards: die Export-Assistenten (CDM light, DwC-A, …) haben derzeit folgenden Workflow:
1) Auswahl Export-Typ
2) Konfigura... Katja Luther
01:44 PM feature request #6922 (Closed): Migrate term editor: Patrick Plitzner
12:33 PM feature request #6922 (Feedback): Migrate term editor: Now, after reconnect the details view and supplemental data is emptied but when clicking on the empty details view th... Andreas Müller
10:53 AM feature request #6922 (Resolved): Migrate term editor: Patrick Plitzner
01:44 PM bug #6973 (Closed): Refreshing details and supplemental view: Copied from #6922:
If one adds a new term and then the label of this term is changed, the new label is not reflect... Patrick Plitzner
01:40 PM bug #6799 (Closed): Implement progress monitor for DwC A export: Andreas Müller
11:36 AM bug #6799 (Resolved): Implement progress monitor for DwC A export: Andreas Müller
10:15 AM bug #6799: Implement progress monitor for DwC A export: the % works now, too. Katja Luther
01:34 PM bug #6972 (New): Editing the same FieldUnit in specimen bulk and tree editor behaves unusual: Andreas M.:
"ich habe das Ticket #6597 ja gerade geschlossen. Dennoch ist mir dabei ein seltsames Phänomen aufge... Patrick Plitzner
12:35 PM feature request #6912 (Closed): Migrate datasources view: Andreas Müller
08:47 AM feature request #6912 (Resolved): Migrate datasources view: Patrick Plitzner
11:15 AM feature request #6957 (Closed): Implement cache strategy for viral names: as a first version it looks fine. Katja Luther
10:58 AM bug #6971 (New): Collect all remaining appearances of multiple representation exceptions since 4.10: Katja Luther
10:56 AM bug #6657 (Worksforme): Reproducable "multiple representations" exception for polytomous keys: this "reproducable" multiple representation exception is not reproducable anymore. Close this ticket and create a new... Katja Luther
10:35 AM bug #6970 (Closed): MediaUtils.filterAndOrderMediaRepresentations perfers thumbnail MediaRepresentations over full sized: portal/taxon/{uuid}/media service only delivers a filtered media object
which only contains the thumbnail repres... Andreas Kohlbecker
10:17 AM bug #6958 (Closed): The description of the referencing objects view is missing in e4: works fine Katja Luther

09/21/2017

11:25 PM bug #6684 (Closed): Use media representation which best fits the available viewport size for the Image Overlay: This seems to be fixed and looks much better now.
There is a similar issue for the taxon profile picture remaining. Andreas Müller
11:24 PM bug #6969 (Closed): Use media representation which best fits the available size for taxon profile picture: As an example you find a taxon with 3 different images here: http://test.e-taxonomy.eu/dataportal/preview/salvador/cd... Andreas Müller
10:31 PM bug #6877 (Closed): links to synonyms not working when portal in tabbed mode without separate synonymy part/tab: Seems to work Andreas Müller
10:20 PM feature request #6691 (Duplicate): Implement all name types in NameDetailElement: I think this is a duplicate Katja Luther
10:12 PM bug #6730 (Feedback): Deleting media leads to inconsistent data: I did some further code cleaning (d8f50ab8), please check if you think this is correct.
While doing so I realized ... Andreas Müller
09:25 PM bug #6730: Deleting media leads to inconsistent data: hopefully yes, I moved the handling of the textdata in a separate method, check for text in textdata and added all up... Katja Luther
09:23 PM bug #6730: Deleting media leads to inconsistent data: Is this for review for me? All issues fixed? Andreas Müller
08:56 PM bug #6730 (Resolved): Deleting media leads to inconsistent data: Applied in changeset commit:cdmlib|b8489aa95407f47ce7d81c2a308fd357bc6032a6. Katja Luther
06:16 PM bug #6730 (Feedback): Deleting media leads to inconsistent data: The general issue that inconsistent data is created and media are deleted if they shouldn't is fixed now.
However,... Andreas Müller
05:53 PM bug #6730: Deleting media leads to inconsistent data: The "Delete" dialog now offers "Delete" or "Überspringen" (sorry don't know what is shown in English version). Why no... Andreas Müller
09:09 PM bug #6813 (Worksforme): Illegal Argument Exception when switching AcceptedTaxonToSynonym: I also can't reproduce. Let's reopen if the error appears again. Andreas Müller
06:51 PM bug #6748 (Closed): Linking between derivate view and facts/media view: Looks like this is fully fixed now. Andreas Müller
06:42 PM feature request #6658 (Closed): Make mediaCreated editable in Media view: Andreas Müller
11:39 AM feature request #6658: Make mediaCreated editable in Media view: removed the indention. So we can close the ticket? Katja Luther
11:38 AM feature request #6658 (Resolved): Make mediaCreated editable in Media view: Applied in changeset commit:taxeditor|e38ddfeee4a59c876fedd950b64cb99147e4f865. Katja Luther
06:34 PM bug #6783 (Closed): Menu item for editing right is missing: This works now. The drag&drop issue is handled in a separate ticket #6894 and #6961 Andreas Müller
05:01 PM bug #6801 (Closed): DwCA Export is not stored at expected place: Seems to be fixed now Andreas Müller
10:03 AM bug #6801: DwCA Export is not stored at expected place: this should be fixed with the last commit. Katja Luther
10:02 AM bug #6801 (Resolved): DwCA Export is not stored at expected place: Applied in changeset commit:taxeditor|30878586ebb8f52ed48a22d66b62ecb6adb37356. Katja Luther
04:56 PM bug #6785 (Closed): Editors should be able to have multiple instances: Seems to be fully fixed now. Andreas Müller
04:51 PM feature request #6933 (Feedback): Add possibility to export only families or other part of the tree in CDM light and DwC-A export: Also if I start export by right click on a taxon node I would expect "Export selected subtree" to be preselected. Cur... Andreas Müller
04:49 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export: If starting the export by right click on a classification I would expect this classification to be preselected in the... Andreas Müller
04:41 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export: Another minor issue:
The label text for the title and subtitle:
Output Model Export -> CDM light Export
co... Andreas Müller
04:38 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export: The radio button works well but the label is now kind of duplicated. Can you please keep "Export complete classificat... Andreas Müller
10:30 AM feature request #6933 (Resolved): Add possibility to export only families or other part of the tree in CDM light and DwC-A export: radio buttons are added and the filter is set to subtree filter, this was implemented already but not pushed. Katja Luther
12:16 AM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export: I tried to export "Nepenthaceae Dumort." from caryo_nepenthes on test-server. The result returned only 1 record in th... Andreas Müller
12:08 AM feature request #6933 (Feedback): Add possibility to export only families or other part of the tree in CDM light and DwC-A export: >The UI component for switching between taxon node and complete classification should more clearly show that these ar... Andreas Müller
04:44 PM feature request #6959 (Resolved): Block to display Registration metadata: Applied in changeset commit:cdm-dataportal|7535252d0d3beb47750d6ee67b45ecd903ab328b. Andreas Kohlbecker
12:00 PM feature request #6959 (In Progress): Block to display Registration metadata: Andreas Kohlbecker
04:29 PM bug #6968 (Closed): Unexpected error in CDM light when exporting Individuals Association with no unit attached: I tried to export "New name" which is child of "Multi repre Test" in Classification "Testklass" on test/rem_conf_am.
... Andreas Müller
04:19 PM bug #6860 (Closed): Use consistent calendar system for date picker: Seems to work correctly now. Andreas Müller
10:08 AM bug #6860 (Resolved): Use consistent calendar system for date picker: Andreas Müller
08:57 AM bug #6860: Use consistent calendar system for date picker: sorry, moved to conversion to UTC timezone to the dateElement. Now it works for all DateElements. Katja Luther
04:18 PM feature request #6964 (Resolved): Registration webservices implemented: Andreas Kohlbecker
12:01 PM feature request #6964 (In Progress): Registration webservices implemented: Andreas Kohlbecker
11:59 AM feature request #6964 (Closed): Registration webservices implemented: The webservices exposing Registrations must not expose Registrations to unauthenticated users which are not yet PUB... Andreas Kohlbecker
04:17 PM feature request #6967 (Closed): RegistrationController identifier endpoints implemented: **RegistrationController**
Endpoints:
~~~
/registration/{identifier}
~~~
~~/registration/{localID}~~
... Andreas Kohlbecker
03:51 PM bug #6803 (Worksforme): Drag&Drop in Taxon Navigator does not refresh tree correctly: I also can't reproduce this anymore so I close as worksforme. Andreas Müller
03:42 PM feature request #6920: [DISCUSS] use ZonedDateTime (java8) instead of joda time: Is this still an open issue? I think we decided not to move to java.time.* for now, but this was more because there a... Andreas Müller
03:32 PM bug #6915: Delete does not work in media view for taxon: Andreas Müller wrote:
> Katja Luther wrote:
> > now all delete options are working, also the problem that while del... Patrick Plitzner
03:29 PM bug #6915: Delete does not work in media view for taxon: Katja Luther wrote:
> now all delete options are working, also the problem that while delete one media from a galler... Andreas Müller
03:31 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor: Andreas Müller wrote:
> @AK: what do you thing from the security implementation perspective?
??
Andreas Müller
02:53 PM bug #6919 (Closed): Unprotected titleCache field is still grayed: works fine Patrick Plitzner
02:43 PM bug #6949 (Closed): The Media details view does not show the full image: remaining issue #6966 Patrick Plitzner
02:43 PM bug #6966 (New): "no file found" warning missing in simple media details view: Copied from #6949:
"There is an issue now which I don't know if it is related. If entering an URL which does not l... Patrick Plitzner
02:41 PM bug #6958 (Resolved): The description of the referencing objects view is missing in e4: Applied in changeset commit:taxeditor|a4857bdaf90208200fd34105d9ba0b6be6fdc20b. Patrick Plitzner
02:01 PM feature request #6965: Tropicos Import: Es handelt sich um einen reinen Namensimport. Allerdings sollte es möglich sein, die Namen unter einen definierten Ta... Andreas Müller
01:58 PM feature request #6965 (Closed): Tropicos Import: Auszug Caryophyllales Mail WGB 18.9.2017:
Für den Import brauchen wir dann wohl Deine Hilfe. Wie dargestellt, gehe... Andreas Müller
12:31 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element: One more issue, which is a bit critical: we currently do have a hard validation if a name contains only data which is... Andreas Müller
12:04 AM bug #6799 (Feedback): Implement progress monitor for DwC A export: >now there is a progress monitor showing the progress for the partitioning. The % of all work is still not working.
... Andreas Müller
12:02 AM bug #6799 (Closed): Implement progress monitor for DwC A export: This seems to work now. Andreas Müller

09/20/2017

11:57 PM bug #6801 (Feedback): DwCA Export is not stored at expected place: The result still does not show up in the expected folder.
However, the progress monitoring works now and also the ... Andreas Müller
11:51 PM bug #6860 (Feedback): Use consistent calendar system for date picker: The given solution seems to work only for Media.createDate. However there are other places where the DateTime and the... Andreas Müller
11:40 PM feature request #6922: Migrate term editor: All other features seem to work. Andreas Müller
11:40 PM feature request #6922: Migrate term editor: A reconnect does not close the term editor. In e3 it still does.
Please also check for other editors. I only checked... Andreas Müller
11:37 PM feature request #6922 (Feedback): Migrate term editor: If one adds a new term and then the label of this term is changed, the new label is not reflected in the label of the... Andreas Müller
11:25 PM bug #6952: Deleting terms does not get reflected in the UI and in the DB: >After reconnecting and re-opening the term editor, the term is gone but it is still is the DB.
What happens in th... Andreas Müller
10:57 PM bug #6897 (Closed): i18n Messages.java files are missing in the build version: Andreas Müller
10:57 PM bug #6897: i18n Messages.java files are missing in the build version: The only message I get beside log4j issues is: Could not find element with Id 'bulkeditor.menus.openmenu' .
As thi... Andreas Müller
10:36 PM feature request #6597 (Closed): Migrate Details View: Looks like this is all fixed. Andreas Müller
07:44 PM feature request #6905 (Closed): Migrate supplemental data view: Seems to work fine now Andreas Müller
07:41 PM feature request #6911 (Feedback): Migrate concept view: All mentioned issues seem to be fixed (loss of focus, save button, closing taxon exception).
A new open issue is: ... Andreas Müller
07:36 PM feature request #6912 (Feedback): Migrate datasources view: >Final issue: Main menu entry in "Open View" has been moved. It should be in the bottom group together with "Session"... Andreas Müller
07:32 PM bug #6949 (Feedback): The Media details view does not show the full image: Andreas Müller
07:31 PM bug #6949: The Media details view does not show the full image: Seems to work and can be closed.
There is an issue now which I don't know if it is related. If entering an URL whi... Andreas Müller
07:03 PM feature request #6529: Extend WorkingSet to allow a more fine grained definiton of taxon set: please review Andreas Müller
07:02 PM feature request #6618 (Resolved): Add link to Structure, Property, Method(?) and Type(?): I suggest to close this ticket as "structure" and "property" is implemented now. We may reopen or create new ticket i... Andreas Müller
06:42 PM feature request #6692 (Closed): Make name types changeable: In future we may want to have not only code abbreviations but more human readable labels. Also we may want to order a... Andreas Müller
06:38 PM feature request #6691: Implement all name types in NameDetailElement: To me this seems to be a duplicate for 6693 (or vice versa). Please see my comments on #6693. Andreas Müller
06:36 PM feature request #6963 (In Progress): Implement cache strategy for cultivar plant names (done), bacterial names, fungi, etc.: We do now allow editing all nomenclatural codes and subtypes (e.g. fungi).
Therefore we need to implement appropri... Andreas Müller
06:33 PM feature request #6693: Implement missing nomenclatural codes for name detail element: Andreas Müller wrote:
> Is it possible to move the "Name approbation" for bacterial names either up below "LSID" or ... Andreas Müller
06:26 PM feature request #6693: Implement missing nomenclatural codes for name detail element: Is it possible to move the "Name approbation" for bacterial names either up below "LSID" or if this is not possible d... Andreas Müller
06:18 PM feature request #6950: Alllow the usage of Viral Names: The NPE related to #6957 is now fixed. We can try to add a details view for Viral names.
The specific issue for vi... Andreas Müller
06:00 PM feature request #6957 (Resolved): Implement cache strategy for viral names: A first version is ready. We may think about handling viral names with rank higher then species differently in future... Andreas Müller
05:35 PM bug #6789 (Closed): Remaining issues for misapplied name details view: Close this ticket and move remaining issues to new ticket #6962 Andreas Müller
05:28 PM bug #6789: Remaining issues for misapplied name details view: Is it possible to also add "Sensu" and "Detail" to the blue part if taxon is clicked to show e.g. supplemental data f... Andreas Müller
05:34 PM bug #6962 (New): Finally remaining issues for misapplied name details view: * TitleCache: unclear what should be shown here, maybe we should hide the titleCache field by default (but make it co... Andreas Müller
04:58 PM bug #6961: Drag&Drop for taxon nodes throws NPE when hovering Classification: Can you please review?
What I do not understand is the difference between TreeNodeDropAdapterAssistant and TreeNod... Andreas Müller
03:11 PM bug #6961 (Resolved): Drag&Drop for taxon nodes throws NPE when hovering Classification: Applied in changeset commit:taxeditor|e2a02bc30e4c5fb72bb85b1b0e0b8edbb53923f4. Andreas Müller
03:09 PM bug #6961 (Closed): Drag&Drop for taxon nodes throws NPE when hovering Classification: ~~~
login :
editor version : 4.10.0.201709192246
server : ()
schema version :
os : Windows Server 2012 R2 6.3... Andreas Müller
02:07 PM bug #6960 (Duplicate): Improve reference cachestrategy: There are a number of issues with the existing reference cache strategy (DefaultReferenceCacheStrategy).
This tick... Andreas Müller
10:43 AM feature request #6959 (Closed): Block to display Registration metadata: This Block should display the:
* PhycobankId
* registrationDate
* institution Andreas Kohlbecker
09:53 AM bug #6958 (Feedback): The description of the referencing objects view is missing in e4: I put this on Feedback to guarantee that we don't miss to handle this regression before the release Andreas Müller
09:19 AM bug #6958 (Closed): The description of the referencing objects view is missing in e4: in the e4 referencing objects view the label/description is missing Katja Luther
09:16 AM feature request #6910: Migrate referencing objects view: The description/label of the view is missing, keep this ticket closed and create a new one.(#6958) Katja Luther

09/19/2017

02:38 PM bug #6493 (Worksforme): Another reproducable "multiple representations" exception for name relationships: Could not reproduce it anymore, played around a lot, but could not create the exception. Tried to open several taxa w... Katja Luther
12:50 PM feature request #6957 (Closed): Implement cache strategy for viral names: Viral names are not yet correctly handled in the name cache strategy and throw an NPE when calling getTitleCache Andreas Müller
12:30 PM feature request #6956 (New): [Rule] Implement validation rules for virus names: ... according to the ICVCN (https://talk.ictvonline.org/information/w/ictv-information/383/ictv-code)
Additional ... Andreas Müller
10:10 AM bug #6418 (Worksforme): Status line does not update after completing the update of the referencing objects view: this seems to be fixed. Katja Luther
09:44 AM bug #6860: Use consistent calendar system for date picker: should be solved now. the UTC timezone is now used for reading. Katja Luther
09:43 AM bug #6860 (Resolved): Use consistent calendar system for date picker: Applied in changeset commit:taxeditor|8b5ab7b25626ebdd368ca8f496f76a3fd7aed1b8. Katja Luther
09:15 AM feature request #6907 (Closed): Migrate factual data view: seems to work now. Katja Luther
08:40 AM bug #6955 (Closed): NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading: now the first opening of the selection dialog is faster, but searching for the first pattern still needs some time. F... Katja Luther
08:37 AM feature request #6926 (Closed): First call of NamedAreaSelectionDialog needs too much time: Katja Luther
08:37 AM feature request #6926 (Resolved): First call of NamedAreaSelectionDialog needs too much time: Katja Luther
08:37 AM feature request #6926: First call of NamedAreaSelectionDialog needs too much time: keep this in 4.10 because starting is faster, but create a new ticket for fixing completely Katja Luther

09/18/2017

08:59 PM feature request #6693: Implement missing nomenclatural codes for name detail element: Applied in changeset commit:taxeditor|d903b1d88feb526e0d13d330569c5c7c7ded40d4. Katja Luther
03:27 PM feature request #6693: Implement missing nomenclatural codes for name detail element: Katja Luther wrote:
> sorry, I missed to commit it on friday, it was committed three hours ago.
But ICVCN is STIL... Andreas Müller
03:05 PM feature request #6693: Implement missing nomenclatural codes for name detail element: sorry, I missed to commit it on friday, it was committed three hours ago. Katja Luther
03:03 PM feature request #6693: Implement missing nomenclatural codes for name detail element: Katja Luther wrote:
> is already commited in Revision 80c710e0, see above
But this version still allows choosing ... Andreas Müller
01:51 PM feature request #6693: Implement missing nomenclatural codes for name detail element: is already commited in Revision 80c710e0, see above Katja Luther
01:41 PM feature request #6693: Implement missing nomenclatural codes for name detail element: Katja Luther wrote:
> removed the viral code because it causes a NPE
Can you please commit this, otherwise I can'... Andreas Müller
11:55 AM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element: added the missing nomenclatural codes, removed the viral code because it causes a NPE. Create a new ticket for detail... Katja Luther
03:04 PM feature request #6926 (In Progress): First call of NamedAreaSelectionDialog needs too much time: now the first opening of the selection dialog is faster, but searching for the first pattern still needs some time. F... Katja Luther
01:42 PM feature request #6691: Implement all name types in NameDetailElement: Is there a difference between this ticket and #6693 or is it a duplicate? Andreas Müller
11:24 AM bug #6919 (Resolved): Unprotected titleCache field is still grayed: Applied in changeset commit:taxeditor|b7d63098d81d12e55cae2eb3c20bc51989312c03. Katja Luther

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