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From 08/23/2017 to 09/21/2017

09/21/2017

11:25 PM bug #6684 (Closed): Use media representation which best fits the available viewport size for the Image Overlay
This seems to be fixed and looks much better now.
There is a similar issue for the taxon profile picture remaining.
Andreas Müller
11:24 PM bug #6969 (Closed): Use media representation which best fits the available size for taxon profile picture
As an example you find a taxon with 3 different images here: http://test.e-taxonomy.eu/dataportal/preview/salvador/cd... Andreas Müller
10:31 PM bug #6877 (Closed): links to synonyms not working when portal in tabbed mode without separate synonymy part/tab
Seems to work Andreas Müller
10:20 PM feature request #6691 (Duplicate): Implement all name types in NameDetailElement
I think this is a duplicate Katja Luther
10:12 PM bug #6730 (Feedback): Deleting media leads to inconsistent data
I did some further code cleaning (d8f50ab8), please check if you think this is correct.
While doing so I realized ...
Andreas Müller
09:25 PM bug #6730: Deleting media leads to inconsistent data
hopefully yes, I moved the handling of the textdata in a separate method, check for text in textdata and added all up... Katja Luther
09:23 PM bug #6730: Deleting media leads to inconsistent data
Is this for review for me? All issues fixed? Andreas Müller
08:56 PM bug #6730 (Resolved): Deleting media leads to inconsistent data
Applied in changeset commit:cdmlib|b8489aa95407f47ce7d81c2a308fd357bc6032a6. Katja Luther
06:16 PM bug #6730 (Feedback): Deleting media leads to inconsistent data
The general issue that inconsistent data is created and media are deleted if they shouldn't is fixed now.
However,...
Andreas Müller
05:53 PM bug #6730: Deleting media leads to inconsistent data
The "Delete" dialog now offers "Delete" or "Überspringen" (sorry don't know what is shown in English version). Why no... Andreas Müller
09:09 PM bug #6813 (Worksforme): Illegal Argument Exception when switching AcceptedTaxonToSynonym
I also can't reproduce. Let's reopen if the error appears again. Andreas Müller
06:51 PM bug #6748 (Closed): Linking between derivate view and facts/media view
Looks like this is fully fixed now. Andreas Müller
06:42 PM feature request #6658 (Closed): Make mediaCreated editable in Media view
Andreas Müller
11:39 AM feature request #6658: Make mediaCreated editable in Media view
removed the indention. So we can close the ticket? Katja Luther
11:38 AM feature request #6658 (Resolved): Make mediaCreated editable in Media view
Applied in changeset commit:taxeditor|e38ddfeee4a59c876fedd950b64cb99147e4f865. Katja Luther
06:34 PM bug #6783 (Closed): Menu item for editing right is missing
This works now. The drag&drop issue is handled in a separate ticket #6894 and #6961 Andreas Müller
05:01 PM bug #6801 (Closed): DwCA Export is not stored at expected place
Seems to be fixed now Andreas Müller
10:03 AM bug #6801: DwCA Export is not stored at expected place
this should be fixed with the last commit. Katja Luther
10:02 AM bug #6801 (Resolved): DwCA Export is not stored at expected place
Applied in changeset commit:taxeditor|30878586ebb8f52ed48a22d66b62ecb6adb37356. Katja Luther
04:56 PM bug #6785 (Closed): Editors should be able to have multiple instances
Seems to be fully fixed now. Andreas Müller
04:51 PM feature request #6933 (Feedback): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
Also if I start export by right click on a taxon node I would expect "Export selected subtree" to be preselected. Cur... Andreas Müller
04:49 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
If starting the export by right click on a classification I would expect this classification to be preselected in the... Andreas Müller
04:41 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
Another minor issue:
The label text for the title and subtitle:
Output Model Export -> CDM light Export
co...
Andreas Müller
04:38 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
The radio button works well but the label is now kind of duplicated. Can you please keep "Export complete classificat... Andreas Müller
10:30 AM feature request #6933 (Resolved): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
radio buttons are added and the filter is set to subtree filter, this was implemented already but not pushed. Katja Luther
12:16 AM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
I tried to export "Nepenthaceae Dumort." from caryo_nepenthes on test-server. The result returned only 1 record in th... Andreas Müller
12:08 AM feature request #6933 (Feedback): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
>The UI component for switching between taxon node and complete classification should more clearly show that these ar... Andreas Müller
04:44 PM feature request #6959 (Resolved): Block to display Registration metadata
Applied in changeset commit:cdm-dataportal|7535252d0d3beb47750d6ee67b45ecd903ab328b. Andreas Kohlbecker
12:00 PM feature request #6959 (In Progress): Block to display Registration metadata
Andreas Kohlbecker
04:29 PM bug #6968 (Closed): Unexpected error in CDM light when exporting Individuals Association with no unit attached
I tried to export "New name" which is child of "Multi repre Test" in Classification "Testklass" on test/rem_conf_am.
...
Andreas Müller
04:19 PM bug #6860 (Closed): Use consistent calendar system for date picker
Seems to work correctly now. Andreas Müller
10:08 AM bug #6860 (Resolved): Use consistent calendar system for date picker
Andreas Müller
08:57 AM bug #6860: Use consistent calendar system for date picker
sorry, moved to conversion to UTC timezone to the dateElement. Now it works for all DateElements. Katja Luther
04:18 PM feature request #6964 (Resolved): Registration webservices implemented
Andreas Kohlbecker
12:01 PM feature request #6964 (In Progress): Registration webservices implemented
Andreas Kohlbecker
11:59 AM feature request #6964 (Closed): Registration webservices implemented

The webservices exposing Registrations must not expose Registrations to unauthenticated users which are not yet PUB...
Andreas Kohlbecker
04:17 PM feature request #6967 (Closed): RegistrationController identifier endpoints implemented

**RegistrationController**
Endpoints:
~~~
/registration/{identifier}
~~~
~~/registration/{localID}~~
...
Andreas Kohlbecker
03:51 PM bug #6803 (Worksforme): Drag&Drop in Taxon Navigator does not refresh tree correctly
I also can't reproduce this anymore so I close as worksforme. Andreas Müller
03:42 PM feature request #6920: [DISCUSS] use ZonedDateTime (java8) instead of joda time
Is this still an open issue? I think we decided not to move to java.time.* for now, but this was more because there a... Andreas Müller
03:32 PM bug #6915: Delete does not work in media view for taxon
Andreas Müller wrote:
> Katja Luther wrote:
> > now all delete options are working, also the problem that while del...
Patrick Plitzner
03:29 PM bug #6915: Delete does not work in media view for taxon
Katja Luther wrote:
> now all delete options are working, also the problem that while delete one media from a galler...
Andreas Müller
03:31 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
Andreas Müller wrote:
> @AK: what do you thing from the security implementation perspective?
??
Andreas Müller
02:53 PM bug #6919 (Closed): Unprotected titleCache field is still grayed
works fine Patrick Plitzner
02:43 PM bug #6949 (Closed): The Media details view does not show the full image
remaining issue #6966 Patrick Plitzner
02:43 PM bug #6966 (New): "no file found" warning missing in simple media details view
Copied from #6949:
"There is an issue now which I don't know if it is related. If entering an URL which does not l...
Patrick Plitzner
02:41 PM bug #6958 (Resolved): The description of the referencing objects view is missing in e4
Applied in changeset commit:taxeditor|a4857bdaf90208200fd34105d9ba0b6be6fdc20b. Patrick Plitzner
02:01 PM feature request #6965: Tropicos Import
Es handelt sich um einen reinen Namensimport. Allerdings sollte es möglich sein, die Namen unter einen definierten Ta... Andreas Müller
01:58 PM feature request #6965 (Closed): Tropicos Import
Auszug Caryophyllales Mail WGB 18.9.2017:
Für den Import brauchen wir dann wohl Deine Hilfe. Wie dargestellt, gehe...
Andreas Müller
12:31 PM feature request #6693 (Feedback): Implement missing nomenclatural codes for name detail element
One more issue, which is a bit critical: we currently do have a hard validation if a name contains only data which is... Andreas Müller
12:04 AM bug #6799 (Feedback): Implement progress monitor for DwC A export
>now there is a progress monitor showing the progress for the partitioning. The % of all work is still not working.
...
Andreas Müller
12:02 AM bug #6799 (Closed): Implement progress monitor for DwC A export
This seems to work now. Andreas Müller

09/20/2017

11:57 PM bug #6801 (Feedback): DwCA Export is not stored at expected place
The result still does not show up in the expected folder.
However, the progress monitoring works now and also the ...
Andreas Müller
11:51 PM bug #6860 (Feedback): Use consistent calendar system for date picker
The given solution seems to work only for Media.createDate. However there are other places where the DateTime and the... Andreas Müller
11:40 PM feature request #6922: Migrate term editor
All other features seem to work. Andreas Müller
11:40 PM feature request #6922: Migrate term editor
A reconnect does not close the term editor. In e3 it still does.
Please also check for other editors. I only checked...
Andreas Müller
11:37 PM feature request #6922 (Feedback): Migrate term editor
If one adds a new term and then the label of this term is changed, the new label is not reflected in the label of the... Andreas Müller
11:25 PM bug #6952: Deleting terms does not get reflected in the UI and in the DB
>After reconnecting and re-opening the term editor, the term is gone but it is still is the DB.
What happens in th...
Andreas Müller
10:57 PM bug #6897 (Closed): i18n Messages.java files are missing in the build version
Andreas Müller
10:57 PM bug #6897: i18n Messages.java files are missing in the build version
The only message I get beside log4j issues is: Could not find element with Id 'bulkeditor.menus.openmenu' .
As thi...
Andreas Müller
10:36 PM feature request #6597 (Closed): Migrate Details View
Looks like this is all fixed. Andreas Müller
07:44 PM feature request #6905 (Closed): Migrate supplemental data view
Seems to work fine now Andreas Müller
07:41 PM feature request #6911 (Feedback): Migrate concept view
All mentioned issues seem to be fixed (loss of focus, save button, closing taxon exception).
A new open issue is: ...
Andreas Müller
07:36 PM feature request #6912 (Feedback): Migrate datasources view
>Final issue: Main menu entry in "Open View" has been moved. It should be in the bottom group together with "Session"... Andreas Müller
07:32 PM bug #6949 (Feedback): The Media details view does not show the full image
Andreas Müller
07:31 PM bug #6949: The Media details view does not show the full image
Seems to work and can be closed.
There is an issue now which I don't know if it is related. If entering an URL whi...
Andreas Müller
07:03 PM feature request #6529: Extend WorkingSet to allow a more fine grained definiton of taxon set
please review Andreas Müller
07:02 PM feature request #6618 (Resolved): Add link to Structure, Property, Method(?) and Type(?)
I suggest to close this ticket as "structure" and "property" is implemented now. We may reopen or create new ticket i... Andreas Müller
06:42 PM feature request #6692 (Closed): Make name types changeable
In future we may want to have not only code abbreviations but more human readable labels. Also we may want to order a... Andreas Müller
06:38 PM feature request #6691: Implement all name types in NameDetailElement
To me this seems to be a duplicate for 6693 (or vice versa). Please see my comments on #6693. Andreas Müller
06:36 PM feature request #6963 (In Progress): Implement cache strategy for cultivar plant names (done), bacterial names, fungi, etc.
We do now allow editing all nomenclatural codes and subtypes (e.g. fungi).
Therefore we need to implement appropri...
Andreas Müller
06:33 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Andreas Müller wrote:
> Is it possible to move the "Name approbation" for bacterial names either up below "LSID" or ...
Andreas Müller
06:26 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Is it possible to move the "Name approbation" for bacterial names either up below "LSID" or if this is not possible d... Andreas Müller
06:18 PM feature request #6950: Alllow the usage of Viral Names
The NPE related to #6957 is now fixed. We can try to add a details view for Viral names.
The specific issue for vi...
Andreas Müller
06:00 PM feature request #6957 (Resolved): Implement cache strategy for viral names
A first version is ready. We may think about handling viral names with rank higher then species differently in future... Andreas Müller
05:35 PM bug #6789 (Closed): Remaining issues for misapplied name details view
Close this ticket and move remaining issues to new ticket #6962 Andreas Müller
05:28 PM bug #6789: Remaining issues for misapplied name details view
Is it possible to also add "Sensu" and "Detail" to the blue part if taxon is clicked to show e.g. supplemental data f... Andreas Müller
05:34 PM bug #6962 (New): Finally remaining issues for misapplied name details view
* TitleCache: unclear what should be shown here, maybe we should hide the titleCache field by default (but make it co... Andreas Müller
04:58 PM bug #6961: Drag&Drop for taxon nodes throws NPE when hovering Classification
Can you please review?
What I do not understand is the difference between TreeNodeDropAdapterAssistant and TreeNod...
Andreas Müller
03:11 PM bug #6961 (Resolved): Drag&Drop for taxon nodes throws NPE when hovering Classification
Applied in changeset commit:taxeditor|e2a02bc30e4c5fb72bb85b1b0e0b8edbb53923f4. Andreas Müller
03:09 PM bug #6961 (Closed): Drag&Drop for taxon nodes throws NPE when hovering Classification
~~~
login :
editor version : 4.10.0.201709192246
server : ()
schema version :
os : Windows Server 2012 R2 6.3...
Andreas Müller
02:07 PM bug #6960 (Duplicate): Improve reference cachestrategy
There are a number of issues with the existing reference cache strategy (DefaultReferenceCacheStrategy).
This tick...
Andreas Müller
10:43 AM feature request #6959 (Closed): Block to display Registration metadata
This Block should display the:
* PhycobankId
* registrationDate
* institution
Andreas Kohlbecker
09:53 AM bug #6958 (Feedback): The description of the referencing objects view is missing in e4
I put this on Feedback to guarantee that we don't miss to handle this regression before the release Andreas Müller
09:19 AM bug #6958 (Closed): The description of the referencing objects view is missing in e4
in the e4 referencing objects view the label/description is missing Katja Luther
09:16 AM feature request #6910: Migrate referencing objects view
The description/label of the view is missing, keep this ticket closed and create a new one.(#6958) Katja Luther

09/19/2017

02:38 PM bug #6493 (Worksforme): Another reproducable "multiple representations" exception for name relationships
Could not reproduce it anymore, played around a lot, but could not create the exception. Tried to open several taxa w... Katja Luther
12:50 PM feature request #6957 (Closed): Implement cache strategy for viral names
Viral names are not yet correctly handled in the name cache strategy and throw an NPE when calling getTitleCache Andreas Müller
12:30 PM feature request #6956 (New): [Rule] Implement validation rules for virus names
... according to the ICVCN (https://talk.ictvonline.org/information/w/ictv-information/383/ictv-code)
Additional ...
Andreas Müller
10:10 AM bug #6418 (Worksforme): Status line does not update after completing the update of the referencing objects view
this seems to be fixed. Katja Luther
09:44 AM bug #6860: Use consistent calendar system for date picker
should be solved now. the UTC timezone is now used for reading. Katja Luther
09:43 AM bug #6860 (Resolved): Use consistent calendar system for date picker
Applied in changeset commit:taxeditor|8b5ab7b25626ebdd368ca8f496f76a3fd7aed1b8. Katja Luther
09:15 AM feature request #6907 (Closed): Migrate factual data view
seems to work now. Katja Luther
08:40 AM bug #6955 (Closed): NamedAreaSelection Dialog needs to be adapted to filtered getUuidAndTitleCache loading
now the first opening of the selection dialog is faster, but searching for the first pattern still needs some time. F... Katja Luther
08:37 AM feature request #6926 (Closed): First call of NamedAreaSelectionDialog needs too much time
Katja Luther
08:37 AM feature request #6926 (Resolved): First call of NamedAreaSelectionDialog needs too much time
Katja Luther
08:37 AM feature request #6926: First call of NamedAreaSelectionDialog needs too much time
keep this in 4.10 because starting is faster, but create a new ticket for fixing completely Katja Luther

09/18/2017

08:59 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Applied in changeset commit:taxeditor|d903b1d88feb526e0d13d330569c5c7c7ded40d4. Katja Luther
03:27 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Katja Luther wrote:
> sorry, I missed to commit it on friday, it was committed three hours ago.
But ICVCN is STIL...
Andreas Müller
03:05 PM feature request #6693: Implement missing nomenclatural codes for name detail element
sorry, I missed to commit it on friday, it was committed three hours ago. Katja Luther
03:03 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Katja Luther wrote:
> is already commited in Revision 80c710e0, see above
But this version still allows choosing ...
Andreas Müller
01:51 PM feature request #6693: Implement missing nomenclatural codes for name detail element
is already commited in Revision 80c710e0, see above Katja Luther
01:41 PM feature request #6693: Implement missing nomenclatural codes for name detail element
Katja Luther wrote:
> removed the viral code because it causes a NPE
Can you please commit this, otherwise I can'...
Andreas Müller
11:55 AM feature request #6693 (Resolved): Implement missing nomenclatural codes for name detail element
added the missing nomenclatural codes, removed the viral code because it causes a NPE. Create a new ticket for detail... Katja Luther
03:04 PM feature request #6926 (In Progress): First call of NamedAreaSelectionDialog needs too much time
now the first opening of the selection dialog is faster, but searching for the first pattern still needs some time. F... Katja Luther
01:42 PM feature request #6691: Implement all name types in NameDetailElement
Is there a difference between this ticket and #6693 or is it a duplicate? Andreas Müller
11:24 AM bug #6919 (Resolved): Unprotected titleCache field is still grayed
Applied in changeset commit:taxeditor|b7d63098d81d12e55cae2eb3c20bc51989312c03. Katja Luther

09/15/2017

04:36 PM task #5375 (In Progress): cdm-server without jsvc
Andreas Kohlbecker wrote:
> A potential solution for the `Service killed by signal 11` problem:
>
> https://commu...
Andreas Kohlbecker
03:55 PM bug #6828 (Closed): SpecimenOrObservation and Person/Team missing in Cache updater
Updating the chache via the admin menu works fine Patrick Plitzner
03:54 PM feature request #6926 (Feedback): First call of NamedAreaSelectionDialog needs too much time
It was still about 6sec when choosing a new country for a FieldUnit.
But maybe it is faster than before. I don't r...
Patrick Plitzner
03:50 PM bug #6919 (Feedback): Unprotected titleCache field is still grayed
This works if I select a specimen in the specimen hierarchy editor but it does **not** work for e.g. the taxon title ... Patrick Plitzner
03:47 PM bug #6918 (Closed): Rank is always sorted by label
Sort order goes according to *Preferences->Taxonomic->Ranks* Patrick Plitzner
03:43 PM bug #6851 (Closed): Use country label instead of description in specimen cache strategy
seems fine Patrick Plitzner
03:39 PM bug #6897: i18n Messages.java files are missing in the build version
For review just take a look at the console when starting from workspace if there is anything about missing translatio... Patrick Plitzner
03:37 PM feature request #6907 (Resolved): Migrate factual data view
Patrick Plitzner
03:20 PM feature request #6906 (Closed): Migrate media view
Created a ticket for the context menu issue -> #6954
Closed ticket.
Patrick Plitzner
03:19 PM bug #6954 (New): Sometimes the context menu of e4 parts does not show up
Copied from #7752:
"after adding a first misapplication in the name editor the context menu for the accepted name...
Patrick Plitzner
03:13 PM feature request #6953 (Closed): use taxonNodeOutStreamPartitioner in CdmLightExport
As suggested in some emails we should try to synchronize CDM light and DwC-A (and potential other exports) as much as... Katja Luther
03:12 PM feature request #6933 (Resolved): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
adapted the text in fileExportWizard and create a new ticket for adapt the cdmlight export to use TaxonNodeOutStreamP... Katja Luther
03:09 PM feature request #6911 (Resolved): Migrate concept view
Patrick Plitzner
02:59 PM feature request #6912 (Resolved): Migrate datasources view
Patrick Plitzner
02:55 PM feature request #6922: Migrate term editor
There are still issues with drag and drop but the rest should work properly
--> ticket #6951, #6952
Patrick Plitzner
02:55 PM bug #6952 (In Progress): Deleting terms does not get reflected in the UI and in the DB
If you delete a term in the term editor nothing happens in the UI.
After reconnecting and re-opening the term editor...
Patrick Plitzner
02:47 PM bug #6951 (Closed): Drag and drop does not update term hierarchy in the UI
In the data base everything works fine and if you reconnect and re-open the term editor the changes are reflected.
...
Patrick Plitzner
02:15 PM bug #6915 (Closed): Delete does not work in media view for taxon
works fine Patrick Plitzner
01:01 PM bug #6949 (Resolved): The Media details view does not show the full image
Applied in changeset commit:taxeditor|7d668f11deb5788a4d9161987d2f3530092ddc8b. Patrick Plitzner
07:52 AM bug #6949 (Closed): The Media details view does not show the full image
The Media details view does not show the full image anymore.
E.g. testserver/rem_conf_am -> Media Bulk editor -> s...
Patrick Plitzner
12:30 PM task #6745: Investigate how e4 model changes affect the cached application model in existing Taxeditor installation
After implementing #6847 the launch flag -clearPersistedState does not seem to work anymore. During development you h... Patrick Plitzner
11:30 AM feature request #6950 (New): Alllow the usage of Viral Names
for more details see #6691#note-9
Also see comment on IViralName. According to this the name is stored in the tit...
Katja Luther
11:28 AM feature request #6691 (Resolved): Implement all name types in NameDetailElement
I removed the viral code from the drop down. Created a new ticket for this and close this one.(#6950) Katja Luther
11:25 AM bug #6801 (Resolved): DwCA Export is not stored at expected place
this should be resolved now. Katja Luther
11:20 AM bug #6799 (Resolved): Implement progress monitor for DwC A export
Applied in changeset commit:taxeditor|23443827458a884d97601ae1974d9701e680c789. Katja Luther
11:01 AM bug #6324: fix dozer mapping after removal of synonym relations and after using TaxonNode
The issue #6948 is fixed now, but the broken mapping needs to be reestablished. So this issue needs to be kept open u... Andreas Kohlbecker
10:32 AM bug #6324 (In Progress): fix dozer mapping after removal of synonym relations and after using TaxonNode
Andreas Kohlbecker
10:59 AM bug #6948 (Resolved): OAIPMH service broken by NPE with verb=ListIdentifiers & set=taxon
Applied in changeset commit:cdmlib|224d902d745b991c4ea3bce9951feac1bb88b565. Andreas Kohlbecker
10:20 AM bug #6948: OAIPMH service broken by NPE with verb=ListIdentifiers & set=taxon
~~~
Caused by:
org.springframework.web.util.NestedServletException: Request processing failed; nested exception...
Andreas Kohlbecker
10:58 AM bug #6836 (Resolved): Swagger documentation for OAIPMH broken
Applied in changeset commit:cdmlib|ae4ea6d7038385688c9049cf247855129e1b463b. Andreas Kohlbecker
10:20 AM bug #6836 (In Progress): Swagger documentation for OAIPMH broken
Andreas Kohlbecker
09:39 AM bug #6730 (Resolved): Deleting media leads to inconsistent data
now it should work as aspected. Katja Luther
09:08 AM feature request #6597 (Resolved): Migrate Details View
Andreas Müller
08:28 AM feature request #6597: Migrate Details View
Andreas Müller wrote:
> In Specimen Tree editor and Specimen bulk editor data is immediately persisted after typing....
Patrick Plitzner
07:52 AM feature request #6597: Migrate Details View
Andreas Müller wrote:
> The Media details view does not show the full image anymore.
>
> E.g. testserver/rem_conf...
Patrick Plitzner
09:04 AM feature request #6905 (Resolved): Migrate supplemental data view
Andreas Müller
08:32 AM bug #6787 (Closed): NPE when opening Specimen Tree Editor
Andreas Müller wrote:
> As far as I can see this was fixed with 4.9.1 so I changed the target version.
>
> I can'...
Patrick Plitzner

09/14/2017

04:33 PM bug #6948 (Closed): OAIPMH service broken by NPE with verb=ListIdentifiers & set=taxon
`taxon/oai?verb=ListIdentifiers&metadataPrefix=oai_dc&set=taxon`
this problem also accounts to other service req...
Andreas Kohlbecker
04:27 PM feature request #6721 (Closed): Show kindOfUnit, Sex and Lifestage also for DerivedUnits in DUFacade
Seems to work though difficult to test due to save problems in bulk editor (https://dev.e-taxonomy.eu/redmine/issues/... Andreas Müller
04:18 PM bug #6799: Implement progress monitor for DwC A export
Did you had a look at the progress view? see attached screenshot Katja Luther
02:57 PM bug #6799 (Feedback): Implement progress monitor for DwC A export
On my computer no progress bar is shown but only the dialog that you can see in the attachement which does not show a... Andreas Müller
04:18 PM feature request #6722 (Closed): Make Life-form available via DerivedUnitFacade
Seems to work though difficult to test due to problems with current save behavior of specimen editors (https://dev.e-... Andreas Müller
04:13 PM bug #6730: Deleting media leads to inconsistent data
Andreas Müller wrote:
> The original problem (deleting a media from BULK editor which is e.g. referenced by a TaxonN...
Katja Luther
03:35 PM bug #6730 (Feedback): Deleting media leads to inconsistent data
The original problem (deleting a media from BULK editor which is e.g. referenced by a TaxonNameDescription via protol... Andreas Müller
04:13 PM feature request #6597: Migrate Details View
In Specimen Tree editor and Specimen bulk editor data is immediately persisted after typing. Closing the view without... Andreas Müller
12:09 PM feature request #6597: Migrate Details View
Except for the above I can't find any other issues (but could not test how it interacts with supplemental data view a... Andreas Müller
11:55 AM feature request #6597 (Feedback): Migrate Details View
The Media details view does not show the full image anymore.
E.g. testserver/rem_conf_am -> Media Bulk editor -> s...
Andreas Müller
03:26 PM bug #6860: Use consistent calendar system for date picker
Andreas Müller wrote:
> With the current solution when storing e.g. 2017-09-14 00:00 and reloading it shows 2017-09...
Katja Luther
01:49 PM bug #6860 (Feedback): Use consistent calendar system for date picker
With the current solution when storing e.g. 2017-09-14 00:00 and reloading it shows 2017-09-14 02:00. This is worse ... Andreas Müller
01:46 PM bug #6860: Use consistent calendar system for date picker
Katja Luther wrote:
> now all DateTime/ZonedDateTime objects use a timezone offset of 0:00.
>
> I already moved t...
Andreas Müller
03:08 PM feature request #6880 (Closed): Allow removing auditing from imports
Worked well for CoL import. If further functionality is needed for other imports we may open new tickets. Andreas Müller
02:48 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
As suggested in some emails we should try to synchronize CDM light and DwC-A (and potential other exports) as much as... Andreas Müller
01:40 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
After running the export the UI is refreshed. This is not necessary as an export should not change the data. Only for... Andreas Müller
01:39 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
The UI component for switching between taxon node and complete classification should more clearly show thet these are... Andreas Müller
01:30 PM feature request #6933 (Feedback): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
I would expect the chosen taxon node being part of the export, currently it looks like it is not. Andreas Müller
02:19 PM feature request #6800: Allow all filters for DwCA export in TaxEditor
In CDM light export we currently distinguish "Export selected subtree" and "Export complete classification". For DwC-... Andreas Müller
02:09 PM bug #6801: DwCA Export is not stored at expected place
Andreas Müller wrote:
> Still the result does not show up in the expected folder.
>
> But also no final result pa...
Andreas Müller
01:57 PM bug #6801 (Feedback): DwCA Export is not stored at expected place
Still the result does not show up in the expected folder.
But also no final result page is shown so maybe the expo...
Andreas Müller
12:06 PM task #5375: cdm-server without jsvc
A potential solution for the `Service killed by signal 11` problem:
https://community.ubnt.com/t5/UniFi-Routing-Sw...
Andreas Kohlbecker
12:01 PM feature request #6905: Migrate supplemental data view
The supplemental data view does not seem to be triggered by bulk editor. If it is empty before it stays empty. If it ... Andreas Müller
11:43 AM bug #6947 (Closed): Incorrect error for LSID field
If you enter a value into the name LSID field and then remove it again you get an red error "URI wird nicht gespeiche... Andreas Müller
11:25 AM bug #6781 (Closed): Automatic update does not work anymore for TaxEditor
I updated from 4.9.1 to 4.9.2 without problems. So I guess the problem is solved.
Still not solved is the update f...
Andreas Müller
11:22 AM bug #6787 (Feedback): NPE when opening Specimen Tree Editor
As far as I can see this was fixed with 4.9.1 so I changed the target version.
I can't reproduce it anymore and al...
Andreas Müller
11:11 AM bug #6842: NPE in Registration constructor when name is null
Looks like there were still some bugs in setName().
* if name was null there was still an NPE in the last line
...
Andreas Müller
10:35 AM bug #6851: Use country label instead of description in specimen cache strategy
Can you please review? Andreas Müller
10:33 AM bug #6875 (Closed): Duplicate menu in search result view
Seems to be fixed. Can't reproduce anymore Andreas Müller
09:57 AM feature request #6946 (New): configurable titleCaches for specimen
The titleCache should be configurable for specimen.
depending on the data different informations and different order...
Katja Luther

09/13/2017

11:57 PM feature request #3740 (Resolved): Allow recursively setting the publish bit for TaxonBase
Applied in changeset commit:cdmlib|4691e160cbd992069ba611f21749e57586edca49. Andreas Müller
04:17 PM feature request #6945 (Resolved): Allow flagging common names as recommended, synonym or unassessed
In the Berlin Model there is a possibility to flag common names as preferred or unassessed (and maybe other status). ... Andreas Müller
04:04 PM feature request #3585: Implement "Heismann Tool"
Andreas Müller wrote:
> The "Heismann Tool" is now replaced by an CDM light export and pdf/word creation via script ...
Andreas Müller
04:02 PM feature request #3585: Implement "Heismann Tool"
The "Heismann Tool" is now replaced by an CDM light export and pdf/word creation via script (to be implemented by Fra... Andreas Müller
04:00 PM bug #4136: authorship part of names not being refreshed in taxon navigator
Is this still an open issue? Andreas Müller
03:49 PM feature request #6933 (Resolved): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
I put this on review for me even if not yet 100% ready. Andreas Müller
03:32 PM bug #3790: After swapping accepted <> synonym the TaxonNavigator should be refreshed
Is this still an open issue? Andreas Müller
03:17 PM feature request #3983: [DISCUSS] Easier reference selection - Euro+Med sourceID
This is probably a duplicate for #5687. Please double check and close if necessary. Andreas Müller
03:10 PM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
For E+M this is at least needed for
* distribution areas
* common name areas
* distribution status
Andreas Müller
02:57 PM feature request #4129: Allow filtering by OriginalSourceType
Still needs to be discussed if needed. Sources should be ordered now by source type so data linneage sources come at ... Andreas Müller
02:45 PM feature request #4133 (Duplicate): publish flag inheritance for new taxa [DISCUSS]
This is now more or less a duplicate for #4101 as this can then be defined by the project admin. Andreas Müller
11:34 AM feature request #6911 (Feedback): Migrate concept view
When editing a concept relationship in the details view the concept view becomes empty. Also the save button is disab... Andreas Müller
10:50 AM feature request #6912 (Feedback): Migrate datasources view
Seems to work well. The only issue I found is that marking multiple records in the view and then trying to delete the... Andreas Müller
10:25 AM feature request #6943 (Closed): Allow zoological in-Authors in taxon names
The zoological code (http://www.nhm.ac.uk/hosted-sites/iczn/code/) allows citation of contributions authors as "A in ... Andreas Müller

09/12/2017

04:35 PM feature request #6942 (New): Authors in EDIT - How to handle IPNI additional author data
State of the art (EDITor)
Example:
Title Cache - Metzeltin, D.M.
Abbrev. Title - Metzeltin [Comment: better Name]
...
Wolf-Henning Kusber
02:41 PM bug #6789: Remaining issues for misapplied name details view
@AM: could you have a look, please. Now I added a taxon section to get this part clickable and maybe the titleCache p... Katja Luther
02:03 PM bug #6789: Remaining issues for misapplied name details view
~~Make taxon clickable in details view to show e.g. supplemental data of taxon. Similar to names in the name part of ... Katja Luther
01:00 PM bug #6941 (New): Deduplicate authors during CoL import
currently we do have ~5 Mio authors, most of them duplicates Andreas Müller
10:02 AM feature request #6721 (Resolved): Show kindOfUnit, Sex and Lifestage also for DerivedUnits in DUFacade
please review Katja Luther
09:05 AM bug #6940 (Rejected): setKindOfUnit creates a new FieldUnit if the derivedUnit is not directly derived from the fieldUnit
this was a problem in ABCD Import because the fieldUnit was not set yet. Katja Luther
08:55 AM bug #6940: setKindOfUnit creates a new FieldUnit if the derivedUnit is not directly derived from the fieldUnit
the method getFieldUnit should not return the field unit of the derived unit but the field unit of the while hierarch... Katja Luther
08:52 AM bug #6940 (Rejected): setKindOfUnit creates a new FieldUnit if the derivedUnit is not directly derived from the fieldUnit
Katja Luther

09/11/2017

10:51 AM bug #6939 (New): MobotOpenUrlResponseSchemaAdapter fails parsing authors
the response of the following request contains a author strong which is not being parsed by the MobotOpenUrlResponseS... Andreas Kohlbecker

09/08/2017

06:13 PM bug #6938 (Resolved): Tasks before a new Euro+Med import
Not yet complete
see also #5082
====
check that the import is adapted such that only referenced authors and...
Andreas Müller
02:31 PM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
first implementation is available Katja Luther
10:39 AM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
on CDM lib side we should use existing taxonomic filtering techniques from DwC-A export.
Also DwC-A export assiste...
Andreas Müller
10:26 AM feature request #6933: Add possibility to export only families or other part of the tree in CDM light and DwC-A export
and implement the configuration wizard for it Katja Luther
10:25 AM feature request #6933 (Closed): Add possibility to export only families or other part of the tree in CDM light and DwC-A export
Katja Luther
01:57 PM bug #6937 (New): Check cascading of partOf named areas (throws NUOE e.g. in CoL import)
Currently the CoL distribution import throws a NonUniqueObject exception during the 1000-2000 partition with TDWG 12 ... Andreas Müller
01:37 PM bug #6936 (New): Deduplicate languages in CoL import
same was already implemented for named areas.
Currently we have about 10000 language records most of the duplicates....
Andreas Müller
01:30 PM bug #6935 (New): Deduplicate distribution status in CoL
Currently we create about 50x the status "alien". Also the status has no vocabulary yet (manually fixed in 2017 versi... Andreas Müller
10:46 AM bug #6934 (New): Exports throw RemoteAccessException
When running export functionality on larger databases (whole database) from within the TaxEditor one often gets Remot... Andreas Müller
07:45 AM feature request #6932 (Closed): Migrate bulk editor
Patrick Plitzner
07:43 AM feature request #6931 (In Progress): Migrate uses view
Patrick Plitzner
06:02 AM feature request #6931 (Closed): Migrate uses view
Patrick Plitzner

09/07/2017

03:40 PM bug #6930: Tree index is null after deleting taxon and moving the children to the parent taxon
The treeIndex should be reset during saving in saveOrUpdateListener, probably this is not called because the deleting... Katja Luther
03:18 PM bug #6930 (New): Tree index is null after deleting taxon and moving the children to the parent taxon
steps to reproduce:
1. have a taxonomic backbone like this: Classification-> Taxon A -> Childtaxon B
1. Delete A ...
Patrick Plitzner
09:53 AM feature request #6905: Migrate supplemental data view
did you test whether the supplemental data are changed if you click on the scientific name? in my workspace it does n... Katja Luther

09/06/2017

10:58 AM feature request #6928 (Rejected): [DISCUSS] Similar methods in taxon service
Katja Luther
10:36 AM feature request #6928: [DISCUSS] Similar methods in taxon service
There is a "TODO still needed and correct?" comment on changeSynonymToRelatedTaxon javadoc. Is this still needed. Do ... Andreas Müller
09:54 AM feature request #6928: [DISCUSS] Similar methods in taxon service
changeSynonymToRelatedTaxon creates a new taxon that has a taxon relationship to the other taxon and changeSynonymToA... Katja Luther
10:34 AM feature request #6691: Implement all name types in NameDetailElement
if the name once is set to viral, the getTaggedName method returns always null.
~~~ java
else if (nonViralName.ge...
Katja Luther

09/05/2017

01:52 PM feature request #6929 (In Progress): handling of misapplied names without accepted name
Hallo,
habe hier noch einen interessanten, bisher nicht abgedeckten Fall, der für mich aber in diese Kategorie gehör...
Katja Luther
10:05 AM feature request #6907: Migrate factual data view
If you already have a descriptionelement and wants to create a new one. Katja Luther
09:42 AM feature request #6909 (In Progress): Migrate taxon navigator
Patrick Plitzner

09/04/2017

07:21 PM feature request #6928 (Rejected): [DISCUSS] Similar methods in taxon service
what is the difference between changeSynonymToRelatedTaxon() and changeSynonymToAcceptedTaxon()
I just stumbled up...
Patrick Plitzner
07:01 PM feature request #6691 (In Progress): Implement all name types in NameDetailElement
Andreas Müller
07:00 PM feature request #6691: Implement all name types in NameDetailElement
Katja Luther wrote:
> Are there any special fields for fungi or viruses?
Please refere to the according interface...
Andreas Müller
12:47 PM feature request #6691: Implement all name types in NameDetailElement
All name types are available in drop down list. Switching between zoological and botanical codes also switching the a... Katja Luther
03:42 PM feature request #6907 (Feedback): Migrate factual data view
Katja Luther wrote:
> clicking on new-> Distribution throws an NPE because the selection is null.
I cannot reprod...
Patrick Plitzner
03:37 PM feature request #6595 (In Progress): Migrate name editor
Patrick Plitzner
03:29 PM feature request #6905: Migrate supplemental data view
I enabled the supplemental view for selections in the details view Patrick Plitzner
01:37 PM feature request #6927 (In Progress): The status string in distribution editor should be choosable between symbol and idInVocabulary
now the symbol can be added to the label if it is selected in the preferences. Katja Luther
12:39 PM feature request #6722 (Resolved): Make Life-form available via DerivedUnitFacade
life form is now available in editor.
the preference is located in serverside preferences -> specimen and observatio...
Katja Luther

09/01/2017

04:55 PM bug #6798 (Duplicate): NPE when trying to drag&drop a classification to the user rights editor
Isn't this a duplicate? Please correct me if being wrong. Andreas Müller
08:28 AM bug #6798 (Rejected): NPE when trying to drag&drop a classification to the user rights editor
this exception should not occur anymore because of the switch to the rootnode in the taxonnavigator. Katja Luther
04:46 PM feature request #6927: The status string in distribution editor should be choosable between symbol and idInVocabulary
Using symbol might be critical as symbol is not necessarily expected to be unique. Also symbol might be expected to b... Andreas Müller
04:34 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
Katja Luther wrote:
> The exception is not thrwon anymore, but the type is now TaxonNode, not Classification.
Do ...
Andreas Müller
12:05 PM bug #6813 (Feedback): Illegal Argument Exception when switching AcceptedTaxonToSynonym
Katja Luther
11:11 AM bug #6730 (Resolved): Deleting media leads to inconsistent data
now there are three options for deletion:
* only remove from gallery
* delete if not used somewhere else
* delet...
Katja Luther
10:33 AM bug #6797: Use short sec citation for misapplied name in NameEditor
please review Katja Luther
10:32 AM bug #6797 (Resolved): Use short sec citation for misapplied name in NameEditor
Applied in changeset commit:taxeditor|5d3f446277bcc5e5d59322ae3568dfcbdc38998f. Katja Luther
09:52 AM bug #6809 (Closed): Name Editor throws double selection change events
seems to work. Katja Luther
09:44 AM bug #6799: Implement progress monitor for DwC A export
please review Katja Luther
09:44 AM bug #6799 (Resolved): Implement progress monitor for DwC A export
Applied in changeset commit:cdmlib|7588eacb62facab072443a1faebbaa224cf6307a. Katja Luther
08:35 AM bug #6799 (In Progress): Implement progress monitor for DwC A export
now there is a progress monitor showing the progress for the partitioning. The % of all work is still not working. Katja Luther
07:44 AM bug #6801 (Resolved): DwCA Export is not stored at expected place
the result is a byte array, this was not handled. Katja Luther
07:38 AM bug #6801 (In Progress): DwCA Export is not stored at expected place
Katja Luther

08/31/2017

01:45 PM bug #6809 (Resolved): Name Editor throws double selection change events
Applied in changeset commit:taxeditor|20fa89e35e3a48b063b1ea8cfd4c7e98e77a3f8a. Patrick Plitzner
10:29 AM bug #6803: Drag&Drop in Taxon Navigator does not refresh tree correctly
I can not reproduce this behaviour. Did you find any error in the log file? Katja Luther
10:24 AM feature request #6907: Migrate factual data view
clicking on new-> Distribution throws an NPE because the selection is null. Katja Luther
09:37 AM bug #6159: improve distribution editor in TaxEditor
the wizard for selection of areas should be improved.
while opening the wizard the vocabularies are not correctly ma...
Katja Luther
09:25 AM bug #6159: improve distribution editor in TaxEditor
Katja Luther wrote:
> Improving the distribution editor and selection of areas used in distribution editor
Hallo,...
Katja Luther

08/30/2017

03:29 PM feature request #6927 (In Progress): The status string in distribution editor should be choosable between symbol and idInVocabulary
For projects using the status symbols for the distribution status it should be possible to show the symbol in status ... Katja Luther
03:09 PM feature request #6926: First call of NamedAreaSelectionDialog needs too much time
please review Katja Luther
03:09 PM feature request #6926 (Resolved): First call of NamedAreaSelectionDialog needs too much time
Katja Luther
03:08 PM feature request #6926 (New): First call of NamedAreaSelectionDialog needs too much time
this seems to be fixed by removing the initModel() call from the AbstractFilteredCdmResourceSelectionDialog-Construct... Katja Luther
03:07 PM feature request #6926 (Resolved): First call of NamedAreaSelectionDialog needs too much time
Applied in changeset commit:taxeditor|af969685c98d7f521384f5735da697ccdae67dbe. Katja Luther
02:34 PM feature request #6926 (Closed): First call of NamedAreaSelectionDialog needs too much time
The first call of the namedAreaSelectionDialog needs quite long. This is because it loads all terms, while no selecti... Katja Luther
01:43 PM bug #6894 (Resolved): NPE when trying drag&drop a Classification to the GrantedAuthority editor
Katja Luther
01:43 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
the dragAssistant now check if the dragged node is the root node and then uses the classification instead of the taxo... Katja Luther
10:37 AM bug #6860 (Resolved): Use consistent calendar system for date picker
maybe we should discuss whether ZonedDateTime is needed or it would be better to use LocalDateTime? Katja Luther
10:35 AM bug #6860: Use consistent calendar system for date picker
now all DateTime/ZonedDateTime objects use a timezone offset of 0:00.
I already moved the dateTime objects to Zone...
Katja Luther

08/29/2017

05:52 PM feature request #6925 (Closed): Migrate general framework
Patrick Plitzner
05:15 PM bug #6924 (Worksforme): Taxon name incorrect after swap synonym with accepted taxon
After I swapped the synonym with the accepted taxon it seems like only the name has changed but not the taxon.
Befo...
Patrick Plitzner
02:30 PM bug #6923 (Closed): move description to other taxon command fails in factual data view
works fine Patrick Plitzner
01:43 PM bug #6923 (Resolved): move description to other taxon command fails in factual data view
please review Katja Luther
01:43 PM bug #6923 (In Progress): move description to other taxon command fails in factual data view
the selection in this handler is not of type Description therefore we need to get the description from the featureNod... Katja Luther
02:19 PM feature request #6692 (Resolved): Make name types changeable
please review Katja Luther

08/28/2017

02:50 PM bug #6923 (Closed): move description to other taxon command fails in factual data view
the description parameter is null Katja Luther
02:49 PM feature request #6907: Migrate factual data view
looks fine, but the command "move description to other taxon" fails, the description parameter is null -> new ticket ... Katja Luther

08/23/2017

02:06 PM feature request #6922 (Resolved): Migrate term editor
Applied in changeset commit:taxeditor|e461037f6e4ea8c4a18c9a54fd564adde1d66a8f. Patrick Plitzner
02:05 PM feature request #6922 (Closed): Migrate term editor
Patrick Plitzner
01:19 PM feature request #6920: [DISCUSS] use ZonedDateTime (java8) instead of joda time
The only thing that I found, which is not supported is to have a partial date without a year and a day without a mont... Katja Luther
11:30 AM feature request #6920: [DISCUSS] use ZonedDateTime (java8) instead of joda time
for the differences see:
https://stackoverflow.com/questions/24631909/differences-between-java-8-date-time-api-jav...
Katja Luther
 

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