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From 08/09/2017 to 09/07/2017

09/07/2017

03:40 PM bug #6930: Tree index is null after deleting taxon and moving the children to the parent taxon
The treeIndex should be reset during saving in saveOrUpdateListener, probably this is not called because the deleting... Katja Luther
03:18 PM bug #6930 (New): Tree index is null after deleting taxon and moving the children to the parent taxon
steps to reproduce:
1. have a taxonomic backbone like this: Classification-> Taxon A -> Childtaxon B
1. Delete A ...
Patrick Plitzner
09:53 AM feature request #6905: Migrate supplemental data view
did you test whether the supplemental data are changed if you click on the scientific name? in my workspace it does n... Katja Luther

09/06/2017

10:58 AM feature request #6928 (Rejected): [DISCUSS] Similar methods in taxon service
Katja Luther
10:36 AM feature request #6928: [DISCUSS] Similar methods in taxon service
There is a "TODO still needed and correct?" comment on changeSynonymToRelatedTaxon javadoc. Is this still needed. Do ... Andreas Müller
09:54 AM feature request #6928: [DISCUSS] Similar methods in taxon service
changeSynonymToRelatedTaxon creates a new taxon that has a taxon relationship to the other taxon and changeSynonymToA... Katja Luther
10:34 AM feature request #6691: Implement all name types in NameDetailElement
if the name once is set to viral, the getTaggedName method returns always null.
~~~ java
else if (nonViralName.ge...
Katja Luther

09/05/2017

01:52 PM feature request #6929 (New): handling of misapplied names without accepted name
Hallo,
habe hier noch einen interessanten, bisher nicht abgedeckten Fall, der für mich aber in diese Kategorie gehör...
Katja Luther
10:05 AM feature request #6907: Migrate factual data view
If you already have a descriptionelement and wants to create a new one. Katja Luther
09:42 AM feature request #6909 (In Progress): Migrate taxon navigator
Patrick Plitzner

09/04/2017

07:21 PM feature request #6928 (Rejected): [DISCUSS] Similar methods in taxon service
what is the difference between changeSynonymToRelatedTaxon() and changeSynonymToAcceptedTaxon()
I just stumbled up...
Patrick Plitzner
07:01 PM feature request #6691 (In Progress): Implement all name types in NameDetailElement
Andreas Müller
07:00 PM feature request #6691: Implement all name types in NameDetailElement
Katja Luther wrote:
> Are there any special fields for fungi or viruses?
Please refere to the according interface...
Andreas Müller
12:47 PM feature request #6691: Implement all name types in NameDetailElement
All name types are available in drop down list. Switching between zoological and botanical codes also switching the a... Katja Luther
03:42 PM feature request #6907 (Feedback): Migrate factual data view
Katja Luther wrote:
> clicking on new-> Distribution throws an NPE because the selection is null.
I cannot reprod...
Patrick Plitzner
03:37 PM feature request #6595 (In Progress): Migrate name editor
Patrick Plitzner
03:29 PM feature request #6905: Migrate supplemental data view
I enabled the supplemental view for selections in the details view Patrick Plitzner
01:37 PM feature request #6927 (In Progress): The status string in distribution editor should be choosable...
now the symbol can be added to the label if it is selected in the preferences. Katja Luther
12:39 PM feature request #6722 (Resolved): Make Life-form available via DerivedUnitFacade
life form is now available in editor.
the preference is located in serverside preferences -> specimen and observatio...
Katja Luther

09/01/2017

04:55 PM bug #6798 (Duplicate): NPE when trying to drag&drop a classification to the user rights editor
Isn't this a duplicate? Please correct me if being wrong. Andreas Müller
08:28 AM bug #6798 (Rejected): NPE when trying to drag&drop a classification to the user rights editor
this exception should not occur anymore because of the switch to the rootnode in the taxonnavigator. Katja Luther
04:46 PM feature request #6927: The status string in distribution editor should be choosable between symbo...
Using symbol might be critical as symbol is not necessarily expected to be unique. Also symbol might be expected to b... Andreas Müller
04:34 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
Katja Luther wrote:
> The exception is not thrwon anymore, but the type is now TaxonNode, not Classification.
Do ...
Andreas Müller
12:05 PM bug #6813 (Feedback): Illegal Argument Exception when switching AcceptedTaxonToSynonym
Katja Luther
11:11 AM bug #6730 (Resolved): Deleting media leads to inconsistent data
now there are three options for deletion:
* only remove from gallery
* delete if not used somewhere else
* delet...
Katja Luther
10:33 AM bug #6797: Use short sec citation for misapplied name in NameEditor
please review Katja Luther
10:32 AM bug #6797 (Resolved): Use short sec citation for misapplied name in NameEditor
Applied in changeset commit:taxeditor|5d3f446277bcc5e5d59322ae3568dfcbdc38998f. Katja Luther
09:52 AM bug #6809 (Closed): Name Editor throws double selection change events
seems to work. Katja Luther
09:44 AM bug #6799: Implement progress monitor for DwC A export
please review Katja Luther
09:44 AM bug #6799 (Resolved): Implement progress monitor for DwC A export
Applied in changeset commit:cdmlib|7588eacb62facab072443a1faebbaa224cf6307a. Katja Luther
08:35 AM bug #6799 (In Progress): Implement progress monitor for DwC A export
now there is a progress monitor showing the progress for the partitioning. The % of all work is still not working. Katja Luther
07:44 AM bug #6801 (Resolved): DwCA Export is not stored at expected place
the result is a byte array, this was not handled. Katja Luther
07:38 AM bug #6801 (In Progress): DwCA Export is not stored at expected place
Katja Luther

08/31/2017

01:45 PM bug #6809 (Resolved): Name Editor throws double selection change events
Applied in changeset commit:taxeditor|20fa89e35e3a48b063b1ea8cfd4c7e98e77a3f8a. Patrick Plitzner
10:29 AM bug #6803: Drag&Drop in Taxon Navigator does not refresh tree correctly
I can not reproduce this behaviour. Did you find any error in the log file? Katja Luther
10:24 AM feature request #6907: Migrate factual data view
clicking on new-> Distribution throws an NPE because the selection is null. Katja Luther
09:37 AM bug #6159: improve distribution editor in TaxEditor
the wizard for selection of areas should be improved.
while opening the wizard the vocabularies are not correctly ma...
Katja Luther
09:25 AM bug #6159: improve distribution editor in TaxEditor
Katja Luther wrote:
> Improving the distribution editor and selection of areas used in distribution editor
Hallo,...
Katja Luther

08/30/2017

03:29 PM feature request #6927 (In Progress): The status string in distribution editor should be choosable...
For projects using the status symbols for the distribution status it should be possible to show the symbol in status ... Katja Luther
03:09 PM feature request #6926: First call of NamedAreaSelectionDialog needs too much time
please review Katja Luther
03:09 PM feature request #6926 (Resolved): First call of NamedAreaSelectionDialog needs too much time
Katja Luther
03:08 PM feature request #6926 (New): First call of NamedAreaSelectionDialog needs too much time
this seems to be fixed by removing the initModel() call from the AbstractFilteredCdmResourceSelectionDialog-Construct... Katja Luther
03:07 PM feature request #6926 (Resolved): First call of NamedAreaSelectionDialog needs too much time
Applied in changeset commit:taxeditor|af969685c98d7f521384f5735da697ccdae67dbe. Katja Luther
02:34 PM feature request #6926 (Closed): First call of NamedAreaSelectionDialog needs too much time
The first call of the namedAreaSelectionDialog needs quite long. This is because it loads all terms, while no selecti... Katja Luther
01:43 PM bug #6894 (Resolved): NPE when trying drag&drop a Classification to the GrantedAuthority editor
Katja Luther
01:43 PM bug #6894: NPE when trying drag&drop a Classification to the GrantedAuthority editor
the dragAssistant now check if the dragged node is the root node and then uses the classification instead of the taxo... Katja Luther
10:37 AM bug #6860 (Resolved): Use consistent calendar system for date picker
maybe we should discuss whether ZonedDateTime is needed or it would be better to use LocalDateTime? Katja Luther
10:35 AM bug #6860: Use consistent calendar system for date picker
now all DateTime/ZonedDateTime objects use a timezone offset of 0:00.
I already moved the dateTime objects to Zone...
Katja Luther

08/29/2017

05:52 PM feature request #6925 (Closed): Migrate general framework
Patrick Plitzner
05:15 PM bug #6924 (Worksforme): Taxon name incorrect after swap synonym with accepted taxon
After I swapped the synonym with the accepted taxon it seems like only the name has changed but not the taxon.
Befo...
Patrick Plitzner
02:30 PM bug #6923 (Closed): move description to other taxon command fails in factual data view
works fine Patrick Plitzner
01:43 PM bug #6923 (Resolved): move description to other taxon command fails in factual data view
please review Katja Luther
01:43 PM bug #6923 (In Progress): move description to other taxon command fails in factual data view
the selection in this handler is not of type Description therefore we need to get the description from the featureNod... Katja Luther
02:19 PM feature request #6692 (Resolved): Make name types changeable
please review Katja Luther

08/28/2017

02:50 PM bug #6923 (Closed): move description to other taxon command fails in factual data view
the description parameter is null Katja Luther
02:49 PM feature request #6907: Migrate factual data view
looks fine, but the command "move description to other taxon" fails, the description parameter is null -> new ticket ... Katja Luther

08/23/2017

02:06 PM feature request #6922 (Resolved): Migrate term editor
Applied in changeset commit:taxeditor|e461037f6e4ea8c4a18c9a54fd564adde1d66a8f. Patrick Plitzner
02:05 PM feature request #6922 (Closed): Migrate term editor
Patrick Plitzner
01:19 PM feature request #6920: [DISCUSS] use ZonedDateTime (java8) instead of joda time
The only thing that I found, which is not supported is to have a partial date without a year and a day without a mont... Katja Luther
11:30 AM feature request #6920: [DISCUSS] use ZonedDateTime (java8) instead of joda time
for the differences see:
https://stackoverflow.com/questions/24631909/differences-between-java-8-date-time-api-jav...
Katja Luther

08/22/2017

03:40 PM feature request #6921 (Closed): Migrate data import views
Patrick Plitzner
03:04 PM feature request #6912 (Resolved): Migrate datasources view
Applied in changeset commit:taxeditor|a5b67ac3d2e90ebe5c4fac0fd7d06fe22511926a. Patrick Plitzner
02:09 PM feature request #6920 (New): [DISCUSS] use ZonedDateTime (java8) instead of joda time
in java8 there is a new time framework (java.time.*) it is inspired by the joda framework.
Katja Luther
01:03 PM bug #6828: SpecimenOrObservation and Person/Team missing in Cache updater
Change the title of a person which is used as collector in bulk editor. Then the titleCache of the field unit needs t... Katja Luther
12:41 PM bug #6828 (Feedback): SpecimenOrObservation and Person/Team missing in Cache updater
I am not sure how to test the titleCache generation but the code looks fine.
Is there a way to produce a "wrong" tit...
Patrick Plitzner
11:17 AM bug #6828 (Resolved): SpecimenOrObservation and Person/Team missing in Cache updater
please review Katja Luther
12:29 PM bug #6860: Use consistent calendar system for date picker
Andreas Müller wrote:
> 1) If one uses the datepicker on a system which differs from the local date inconsistent res...
Katja Luther
12:04 PM feature request #6910 (Closed): Migrate referencing objects view
Katja Luther
12:04 PM feature request #6910 (Resolved): Migrate referencing objects view
works fine now. Katja Luther
11:59 AM feature request #6910: Migrate referencing objects view
This should be fixes with commit:taxeditor|d17343e957802584789d3930f4206bd156cf97aa Patrick Plitzner
09:32 AM feature request #6910 (Feedback): Migrate referencing objects view
This view also does not listen on the changed selection in details view if the name is selected.
But the rest works ...
Katja Luther
10:57 AM bug #6813 (In Progress): Illegal Argument Exception when switching AcceptedTaxonToSynonym
I can't reproduce this anymore, maybe it was fixed with the changes in 4.9
@AM: could you please try to reproduce i...
Katja Luther
09:09 AM bug #6919 (Resolved): Unprotected titleCache field is still grayed
Applied in changeset commit:taxeditor|94d05504845df5c427bff9625a89e80e873b05d7. Katja Luther
08:36 AM bug #6919 (Closed): Unprotected titleCache field is still grayed
After unprotect a cache field the field should not be grayed anymore Katja Luther
08:31 AM feature request #6597 (Resolved): Migrate Details View
Katja Luther wrote:
> one open issues: the cache fields shouldn't be grayed if they are editable.
this is an old ...
Katja Luther

08/21/2017

05:51 PM feature request #6907 (Resolved): Migrate factual data view
Patrick Plitzner
05:50 PM feature request #6910 (Resolved): Migrate referencing objects view
Patrick Plitzner
05:49 PM feature request #6911 (Resolved): Migrate concept view
Patrick Plitzner
02:18 PM bug #6918: Rank is always sorted by label
please review Katja Luther
02:16 PM bug #6918 (Resolved): Rank is always sorted by label
Applied in changeset commit:taxeditor|b32cbeab9266e20daa3f8c65ce4aad1729d98554. Katja Luther
02:08 PM bug #6918 (Closed): Rank is always sorted by label
the preference sort order of ranks is not used anymore. For the sort order of ranks in drop down menu this preference... Katja Luther

08/18/2017

02:31 PM bug #6789 (In Progress): Remaining issues for misapplied name details view
now it is possible to reuse an existing taxon, but the refresh problem still exist, so the taxon needs to be closed t... Katja Luther
02:29 PM feature request #6597: Migrate Details View
Katja Luther wrote:
> The details view for misapplied names is switched back to the taxon details view.
this is f...
Katja Luther
01:19 PM feature request #6597: Migrate Details View
The details view for misapplied names is switched back to the taxon details view. Katja Luther
10:40 AM feature request #6597 (Feedback): Migrate Details View
Katja Luther
10:40 AM feature request #6597: Migrate Details View
one open issues: the cache fields shouldn't be grayed if they are editable. Katja Luther
11:17 AM bug #6894 (In Progress): NPE when trying drag&drop a Classification to the GrantedAuthority editor
The exception is not thrwon anymore, but the type is now TaxonNode, not Classification. Katja Luther
10:45 AM bug #6915 (Resolved): Delete does not work in media view for taxon
Katja Luther

08/17/2017

12:49 PM bug #6915: Delete does not work in media view for taxon
now all delete options are working, also the problem that while delete one media from a gallery removed the whole gal... Katja Luther

08/16/2017

03:31 PM feature request #6906: Migrate media view
The media view works also for the specimen editor, but sometimes the menu does not show up or if it there, the click ... Katja Luther
12:03 PM feature request #6906 (Feedback): Migrate media view
The media view does not work for the specimen editor Katja Luther
03:00 PM bug #6917 (Worksforme): NPE during delete of author or team in bulk editor
Walter:
"beim Löschen eines Autors oder Teams im Bulk Editor"

login : w.berendsohn
editor version : 4...
Patrick Plitzner
01:48 PM bug #6915 (Feedback): Delete does not work in media view for taxon
Deleting works but only with the second option "Remove ... and delete teh media completely...". The other two options... Patrick Plitzner
12:01 PM bug #6915 (Resolved): Delete does not work in media view for taxon
this was because the object from where the media should be deleted is not set in the configurator, this is fixed with... Katja Luther
12:37 PM feature request #6905 (Feedback): Migrate supplemental data view
when changing from taxon to name the supplemental data view still shows the taxon data Katja Luther
12:06 PM feature request #6834: [DISCUSS] add inner text to Intextreference or other ideas for easier hand...
Andreas Müller wrote:
> More difficult is it to use 2 citations for the same text part. This is difficult to handl...
Katja Luther
09:27 AM feature request #6834: [DISCUSS] add inner text to Intextreference or other ideas for easier hand...
this was the email discussion:
Nachtrag: aber ich bin da auch nicht grundsätzlich abgeneigt. Und wenn es nur zum D...
Katja Luther

08/15/2017

03:01 PM feature request #6834: [DISCUSS] add inner text to Intextreference or other ideas for easier hand...
Is the original task of this ticket still an issue. I think I send an answer once. I am not sure that we really need ... Andreas Müller
02:59 PM feature request #6834: [DISCUSS] add inner text to Intextreference or other ideas for easier hand...
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > We also need to discuss how we want to h...
Andreas Müller
02:46 PM feature request #6834: [DISCUSS] add inner text to Intextreference or other ideas for easier hand...
Andreas Müller wrote:
> Katja Luther wrote:
> > We also need to discuss how we want to handle references cited more...
Katja Luther
02:43 PM feature request #6834: [DISCUSS] add inner text to Intextreference or other ideas for easier hand...
Katja Luther wrote:
> We also need to discuss how we want to handle references cited more than once in a text. Do we...
Andreas Müller
12:49 PM feature request #6834: [DISCUSS] add inner text to Intextreference or other ideas for easier hand...
We also need to discuss how we want to handle references cited more than once in a text. Do we have an intextReferenc... Katja Luther
02:43 PM feature request #6916 (In Progress): Link IntextReference to OriginalSource, not Reference
Or allow both. This is in line with the general handling of sources that is planned. Andreas Müller
02:35 PM feature request #6597: Migrate Details View
Katja, can you review this first and then pass to me? Andreas Müller
02:35 PM feature request #6905: Migrate supplemental data view
Katja, can you review this first and then pass to me? Andreas Müller
02:30 PM feature request #6906: Migrate media view
Katja, can you review this first and then pass to me? Andreas Müller
12:28 PM feature request #6906 (Resolved): Migrate media view
There is still an issue with the delete handler which has nothing to do with the migration.
None of the delete optio...
Patrick Plitzner
01:37 PM feature request #6485: Implement IntextReferences in TaxEditor
A first implementation can be found in branch intextReference. Katja Luther
12:40 PM feature request #6485 (In Progress): Implement IntextReferences in TaxEditor
Katja Luther
12:27 PM bug #6915 (Closed): Delete does not work in media view for taxon
I tried to delete an image which belongs to an image gallery of a taxon.
None of the delete options of the configu...
Patrick Plitzner
11:13 AM bug #6914 (In Progress): exception in bulk editor after search
Patrick Plitzner
10:29 AM bug #6914 (Closed): exception in bulk editor after search
After searching in bulk editor an exception is thrown:
~~~
Caused by: java.lang.IllegalArgumentException: Object ...
Katja Luther

08/14/2017

09:50 AM feature request #6913 (Closed): Remove e3 parts and dependencies
Patrick Plitzner
09:48 AM feature request #6912 (Closed): Migrate datasources view
Patrick Plitzner
09:48 AM feature request #6911 (Closed): Migrate concept view
Patrick Plitzner
09:47 AM feature request #6910 (Closed): Migrate referencing objects view
Patrick Plitzner
09:47 AM feature request #6909 (Closed): Migrate taxon navigator
Patrick Plitzner
09:46 AM feature request #6908 (Closed): Migrate polytomous key module
Patrick Plitzner
09:46 AM feature request #6907 (Closed): Migrate factual data view
Patrick Plitzner
09:46 AM feature request #6906 (Closed): Migrate media view
Patrick Plitzner
09:44 AM feature request #6905: Migrate supplemental data view
Patrick Plitzner wrote:
> There is still the issue that the views are not restored. But please test the rest.
Thi...
Patrick Plitzner
09:44 AM feature request #6597: Migrate Details View
Patrick Plitzner wrote:
> There is still the issue that the views are not restored. But please test the rest.
Thi...
Patrick Plitzner

08/12/2017

11:23 PM task #6753: Edaphobase data issues before import
Autoren mit " in "
~~~ sql
SELECT *
FROM tax_taxon
WHERE tax_author_name like '% in %'
~~~
157/71 distinkte...
Andreas Müller
02:47 PM task #6753: Edaphobase data issues before import
Incorrect usage of name_addition. Das Feld wird häufig für Autoren verwendet. Oder für infraspezifische Epithete: "[v... Andreas Müller
02:13 PM task #6753: Edaphobase data issues before import
Taxa mit Autor aber ohne Jahreszahl
~~~ sql
SELECT *
FROM tax_taxon
WHERE tax_year is NULL AND tax_author_name ...
Andreas Müller
12:36 PM bug #4707 (In Progress): LSID Authority service cannot find CoL LSIDs
Andreas Müller
12:27 PM bug #4707: LSID Authority service cannot find CoL LSIDs
~~~ sql
INSERT INTO `col_test`.`LSIDAuthority` (`id`, `uuid`, `authority`, `port`) VALUES ('1', 'cab132a8-b26a-4e07-...
Andreas Müller
12:16 PM bug #4707: LSID Authority service cannot find CoL LSIDs
AK, now I understand the problem. There are missing entries in tables "LSIDAuthority" and "lsidauthority_namespaces".... Andreas Müller

08/11/2017

01:12 PM feature request #6905 (Resolved): Migrate supplemental data view
There is still the issue that the views are not restored. But please test the rest. Patrick Plitzner
01:12 PM feature request #6597: Migrate Details View
There is still the issue that the views are not restored. But please test the rest. Patrick Plitzner
12:37 PM feature request #6597 (Resolved): Migrate Details View
Patrick Plitzner

08/10/2017

04:52 PM feature request #6905 (Closed): Migrate supplemental data view
Patrick Plitzner
12:28 PM feature request #6903 (In Progress): Requirements for checklisteditor of the German states
GL (03.08.2017):
anbei unser Vorschlag zum Checklisteneditor der Bundesländer, sowohl Festlegungen hinsichtlich d...
Agnes Kirchhoff
12:15 PM feature request #6902 (Closed): Migrate molecular module
Patrick Plitzner

08/09/2017

03:06 PM task #6901 (New): Test if Polygone is a possible alternative in architecture (Composite oriented ...
See https://polygene.apache.org/java/latest/intro.html
And the tutorials at https://polygene.apache.org/java/late...
Andreas Müller
02:12 PM bug #6900 (New): Handle virus names correctly in CoL
Virus names are not handled correctly in the CoL DwCA as genus names have a ":" at the end and fields like specific e... Andreas Müller
02:09 PM bug #6899 (New): Genus names have empty protected authorshipcache
Genuses and probably other names have no authors. These are currently stored as empty (but not null) authorship cache... Andreas Müller
02:05 PM feature request #6898: Implement stable identifiers for CoL import
GfBio: „wenn Andreas anbietet, dass die UUIDs mittels des LSIDs stabil gehalten werden können, dann sollte das gemach... Andreas Müller
02:04 PM feature request #6898 (New): Implement stable identifiers for CoL import
The only stable identifiers we currently have are the CoL LSIDs. Neither names nor taxa have stable CDM identifiers.
...
Andreas Müller
12:15 PM bug #6897 (Resolved): i18n Messages.java files are missing in the build version
Applied in changeset commit:taxeditor|44bfbe55b9a2f47a25914f06954094e7fd72bd8c. Patrick Plitzner
12:13 PM bug #6897 (Closed): i18n Messages.java files are missing in the build version
Patrick Plitzner
12:03 PM bug #6781 (Resolved): Automatic update does not work anymore for TaxEditor
I updated my week-old nightly (02.08) to the current version (08.08) and it worked. This did not succeed before the c... Patrick Plitzner
11:27 AM bug #6896 (Worksforme): date selection corrupted
issue has already been fixed with Hotfix 4.9.1 Patrick Plitzner
 

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