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From 05/21/2017 to 06/19/2017

06/19/2017

10:38 PM feature request #6740 (Closed): Popup Editor for NameTypeDesignation
Andreas Kohlbecker
03:22 PM feature request #6738 (New): create generic icons for specimen editor
Botanical icons are used at the moment.
The need for generic icons also covering other organimsm groups has been str...
Tilo Henning
01:01 PM feature request #6694: Migrate FeatureTreeEditor
Andreas Müller wrote:
> Patrick Plitzner wrote:
> > Andreas Müller wrote:
> > > Sometimes there is a bug when movi...
Andreas Müller
12:58 PM feature request #6694: Migrate FeatureTreeEditor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Sometimes there is a bug when moving nodes. The node does not g...
Andreas Müller
12:55 PM feature request #6694: Migrate FeatureTreeEditor
Can you provide according translations for the tab title and the title lable. Something like "Merkmals Baum Editor" u... Andreas Müller
12:54 PM feature request #6694: Migrate FeatureTreeEditor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > If entering text into the "Title" search box has no effect, the...
Andreas Müller
12:48 PM feature request #6694: Migrate FeatureTreeEditor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > Please move the menu entry to "Term Editor" and there below "Ot...
Andreas Müller
12:47 PM feature request #6694 (Feedback): Migrate FeatureTreeEditor
Patrick Plitzner wrote:
> Andreas Müller wrote:
> > When moving the Edtior with in the UI I got an IllegalAurgument...
Andreas Müller

06/17/2017

11:37 PM feature request #6694 (Resolved): Migrate FeatureTreeEditor
Andreas Müller

06/16/2017

03:46 PM feature request #6694: Migrate FeatureTreeEditor
Andreas Müller wrote:
> Please move the menu entry to "Term Editor" and there below "Others" separated with 2 separa...
Patrick Plitzner
03:16 PM feature request #6694: Migrate FeatureTreeEditor
Andreas Müller wrote:
> Sometimes there is a bug when moving nodes. The node does not get deleted at the old positio...
Patrick Plitzner
02:59 PM feature request #6694: Migrate FeatureTreeEditor
Andreas Müller wrote:
> If entering text into the "Title" search box has no effect, the text box should be disabled ...
Patrick Plitzner
02:58 PM feature request #6694: Migrate FeatureTreeEditor
Andreas Müller wrote:
> When moving the Edtior with in the UI I got an IllegalAurgumentException (Message: null). Ti...
Patrick Plitzner
02:57 PM feature request #6694: Migrate FeatureTreeEditor
Andreas Müller wrote:
> If moving nodes in the tree everything seems to be saved immediately. This is unexpected beh...
Patrick Plitzner
03:43 PM bug #6645 (Closed): area data parameter missing in portal/description/distributionInfoFor response
Saskia Gennrich
11:05 AM bug #6645: area data parameter missing in portal/description/distributionInfoFor response
Hi Saskia,
this is only a problem of missing data. After a fresh import the mapping between the named areas and th...
Andreas Kohlbecker
02:12 PM bug #6726 (Resolved): NPE in FactualDataView and feature selection does not show any entries in Factual Data View
Applied in changeset commit:taxeditor|87110d2e2f8e95f7fa3c0291a2a556c0a8364ef0. Patrick Plitzner
12:20 PM feature request #6737 (New): Make error message available in "Copy Error"
In error dialog the error message itself is not available when using "Copy Error". However it is shown in the text fi... Andreas Müller
12:17 PM task #6736 (Duplicate): Handle server not available user friendly
During an export that was interrupted by a restarting CdmServer I got the below error.
The message is difficult to...
Andreas Müller
12:16 PM bug #6733 (Resolved): NPE when trying to open Derivative Editor
Patrick Plitzner
11:57 AM bug #6733: NPE when trying to open Derivative Editor
To correctly test this you have to delete `{home}/.cdmLibrary/.metadata/.plugins/org.eclipse.e4.workbench/workbench.x... Patrick Plitzner
09:36 AM bug #6733 (Closed): NPE when trying to open Derivative Editor
~~~
login : admin
editor version : 4.8.0.201706072259
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
...
Patrick Plitzner
11:27 AM feature request #6735 (New): Collect all footnotes of a cdm_dataportal page and display it a the bottom
Alle Footnotes unten auf der Seite sammeln, so dass diese nicht bei den einzelnen Feature-Blöcken, sondern gesammelt ... Andreas Kohlbecker
08:41 AM feature request #6732 (Closed): Rank selector offering 2 filtered lists of ranks (default, all) for phycobank
The rank select should have an associated checkbox "Show all" which toggles the list of offered ranks.
Two filtered ...
Andreas Kohlbecker
08:26 AM feature request #6700 (Closed): Adapt dataportal to TaxonName model changes
Du bist aber hartnäckig ;-)
Ich habe das bewusst offengelassen weil ich mir nicht sicher war, ob es nicht doch noc...
Andreas Kohlbecker
08:20 AM feature request #6442: Feature block settings: margins for data in block level elements
The like this:
* see the "Notes" feature elements having no space: http://caryophyllales.org/nepenthaceae/cdm_data...
Andreas Kohlbecker

06/15/2017

11:27 PM task #6717 (Resolved): Rename taxonNameBaseTitleCacheIndex and taxonNameBaseNameCacheIndex
Applied in changeset commit:cdmlib|866e99f0782680bda5f602139c7005a1d84915e1. Andreas Müller
04:26 PM task #6535 (Closed): MetaDataPropertyName from number to string in DB
Andreas Müller
04:25 PM task #6535: MetaDataPropertyName from number to string in DB
Finally this should be fixed now. Andreas Müller
04:02 PM task #6535: MetaDataPropertyName from number to string in DB
Update script for incorrect update
~~~ sql
UPDATE CdmMetaData SET PropertyName = 'TERM_VERSION' WHERE PropertyN...
Andreas Müller
03:51 PM feature request #6663 (Closed): Add required attributes to Reference to include externally managed references
The new field appear in the database so I think we can close this ticket. As the field should not be edited by users ... Andreas Müller
03:44 PM task #6731 (New): [DISCUSS] What information do we need to define the mapping used for data from external services
see #6663 for further details
AM: "Was wir vermutlich noch brauchen ist ein „Format“ oder „Mapping“ Feld, welches ...
Andreas Müller
03:24 PM bug #6480: Re-saved by cascade in specimen bulk editor
The original problem seems to be solved. So if above issues are not easy to fix please move to a new ticket and close... Andreas Müller
03:09 PM bug #6480: Re-saved by cascade in specimen bulk editor
I wonder if "Delete children" makes sense in bulk editor. This is a flat view. Users may not know what a "child" is. ... Andreas Müller
02:58 PM bug #6480: Re-saved by cascade in specimen bulk editor
Labels:
* "Delete Children" => "Delete **c**hildren", to be consistent
* Delete from "Described specimen" => ......
Andreas Müller
02:42 PM bug #6480 (Feedback): Re-saved by cascade in specimen bulk editor
There is a problem with the message displayed in Confirm Deletion dialog. Looks like i18n does not work correctly. Se... Andreas Müller
02:26 PM feature request #6607 (Closed): Implement WebSite.accessed in TaxEditor
Andreas Müller
01:57 PM feature request #6607: Implement WebSite.accessed in TaxEditor
Andreas Müller wrote:
> I guess we can close this ticket as all open issues are handled in #6658#note-11. I assume t...
Katja Luther
01:55 PM feature request #6607: Implement WebSite.accessed in TaxEditor
I guess we can close this ticket as all open issues are handled in #6658#note-11. I assume that fixing them there wil... Andreas Müller
02:23 PM feature request #6442 (Feedback): Feature block settings: margins for data in block level elements
Not sure anymore what this ticket is all about. Can you leave me a note how and what to test?
What exactly is mean...
Andreas Müller
02:16 PM feature request #5258 (Closed): Accessed field for WebPages
Tested also in TaxEditor and even titleCache update works fine. Close this ticket. Andreas Müller
02:14 PM feature request #6700: Adapt dataportal to TaxonName model changes
Again: can we close this ticket? Andreas Müller
01:51 PM feature request #6658 (Feedback): Make mediaCreated editable in Media view
It looks much better now.
Some smaller issues:
* ~~most important: if there is already data available the dial...
Andreas Müller
01:38 PM feature request #6527: Refactor delete configurator for media
The critical delete itself seems to work now. However, there is a very similar case described in #6730. Andreas Müller
12:41 PM feature request #6527: Refactor delete configurator for media
By the way, we may need the same configurator for "Image gallery delete". To me it looks like this currently does not... Andreas Müller
12:31 PM feature request #6527: Refactor delete configurator for media
If choosing "Delete media data, if not referenced by other data" now returns a kind of error saying that it is not po... Andreas Müller
12:22 PM feature request #6527: Refactor delete configurator for media
In German I would prefer "Wollen **S**ie die Mediendaten wirklich löschen?" statt "Wollen **S**ie wirklich die Medien... Andreas Müller
12:20 PM feature request #6527: Refactor delete configurator for media
Katja Luther wrote:
> This is done, but I used the term media data, because I think media record is also a technical...
Andreas Müller
12:14 PM feature request #6527 (Feedback): Refactor delete configurator for media
Andreas Müller wrote:

> By the way I would set the default to this option because I don't think people expect med...
Andreas Müller
01:33 PM bug #6730: Deleting media leads to inconsistent data
I also do not fully understand why only the 2 explicit usecases "TaxonDescription" and "SpecimenDescription" are hand... Andreas Müller
01:27 PM bug #6730 (Resolved): Deleting media leads to inconsistent data
The same problem as described in #6527#note-6 also appears in media bulk editor if you try to delete a media that is ... Andreas Müller
01:22 PM bug #6664 (Closed): Deleting often does not succeed without throwing an exception
This fix was in the deleteHandler for all bulk editors, so it works for all bulkeditors Katja Luther
01:19 PM bug #6664 (Feedback): Deleting often does not succeed without throwing an exception
A first check looks fine. I only tested with Media. Is the fix for ALL bulk editors? If no, could you please implemen... Andreas Müller
11:58 AM feature request #6661 (Closed): Add initials to Person
Andreas Müller
11:57 AM feature request #6661: Add initials to Person
WHK:
Bestätigung durch Nélida:
Maria del Carmen als M.d.C. abkürzen,
sonst ist eine andere Person gemeint.
Ha...
Andreas Müller
11:56 AM feature request #6661: Add initials to Person
AM: vielen Dank für die Antwort. Damit ist das alles schon richtig, da ich mir das auch so gedacht habe.
>Maria da...
Andreas Müller
11:55 AM feature request #6661: Add initials to Person
WGB:
bei allen Optionen muss man ja berücksichtigen, dass dies nur die automatischen Erzeugungen betrifft – man ka...
Andreas Müller
10:54 AM bug #6729 (New): NPE when closing the editor
While shut down tre editor following exception occurs:
~~~ text
!ENTRY org.eclipse.osgi 4 0 2017-06-15 10:43:29.1...
Katja Luther
12:58 AM feature request #6694: Migrate FeatureTreeEditor
Sometimes there is a bug when moving nodes. The node does not get deleted at the old position but is added at the new... Andreas Müller
12:54 AM feature request #6694: Migrate FeatureTreeEditor
If moving nodes in the tree everything seems to be saved immediately. This is unexpected behavior as users are used t... Andreas Müller
12:48 AM feature request #6694: Migrate FeatureTreeEditor
Layout: The search box is longer then the textbox for the data. It should be aligned. Andreas Müller
12:47 AM feature request #6694: Migrate FeatureTreeEditor
If entering text into the "Title" search box has no effect, the text box should be disabled for entering text. Andreas Müller
12:45 AM feature request #6694: Migrate FeatureTreeEditor
When moving the Edtior with in the UI I got an IllegalAurgumentException (Message: null). Title: "Could not get conve... Andreas Müller
12:37 AM feature request #6694: Migrate FeatureTreeEditor
Please move the menu entry to "Term Editor" and there below "Others" separated with 2 separators; and call in "Featur... Andreas Müller
12:27 AM feature request #6694 (Feedback): Migrate FeatureTreeEditor
Please check #6726 if these bugs are related to the changes in this ticket. Andreas Müller

06/14/2017

10:24 PM feature request #6661: Add initials to Person
Hallo,
...
Das wichtigste Problem scheinen Klammern zu sein. Hier ein paar Beispiele:
========
Constantin (Ko...
Andreas Müller
05:31 PM feature request #6711 (Closed): Make initials editable in TaxEditor
Seems to work. Only cache update doesn't works sometimes in calling dialog/view. But this is a general issue not rela... Andreas Müller
05:11 PM bug #6728 (Closed): Changing author data when editing a reference does neither update the reference titleCache nor the author label
How to reproduce:
* Create a taxon with NO secundum set
* Add a secundumg by creating a new generic reference w...
Andreas Müller
05:01 PM bug #6489 (Closed): Selection dialogs should not show the already selected elements for Synonym and TaxonNode operations
I tested this. It works for the 3 given operations.
The ticket description says that ALL dialogs shoud be tested and...
Andreas Müller
05:00 PM feature request #6727 (New): Remaining selection dialogs that show already selected object
* SupplementalData - Sources - Reference
* SupplementalData - Credits - Agent
* SupplementalData - Rights - Agent
...
Andreas Müller
04:33 PM bug #6726 (Closed): NPE in FactualDataView and feature selection does not show any entries in Factual Data View
Clicking on "New" does not open submenu.
This might be related to changes in feature tree editor.
Also creating...
Andreas Müller
03:11 PM feature request #6658 (Resolved): Make mediaCreated editable in Media view
Andreas Müller
02:56 PM feature request #6658: Make mediaCreated editable in Media view
now there is a calendar widget to choose the date and the time.
The DateElement is used for DNAQualityCheck (qual...
Katja Luther
01:26 PM feature request #6722: Make Life-form available via DerivedUnitFacade
WHK (personal communication): the main use-case is to distinguish benthos and plankton samples. Therefore having it o... Andreas Müller
01:23 PM feature request #6722: Make Life-form available via DerivedUnitFacade
Life-form is only needed for field units, this is correct. Wolf-Henning Kusber
01:23 PM bug #6725: Bug in DU facade for setting / retrieving kind of unit
Please review Andreas Müller
01:22 PM bug #6725 (Resolved): Bug in DU facade for setting / retrieving kind of unit
Applied in changeset commit:cdmlib|d30f87c51b80e150843d998d604fc4a0fd764cb2. Andreas Müller
11:57 AM bug #6725 (Closed): Bug in DU facade for setting / retrieving kind of unit
Currently the setting the kind of unit for a derived unit it is stored in the derived unit. Only if the facade is a f... Andreas Müller
11:08 AM bug #6303: distribution map is moving too fast
Hi Gabi, can you please review? The fix is also available in production now. Andreas Müller
11:03 AM bug #6582: status bar not completely visible
can we split this ticket? Andreas Müller

06/13/2017

02:51 PM feature request #6607 (Feedback): Implement WebSite.accessed in TaxEditor
Same comment as #6662#note-8.
Maybe we can close these 2 tickets and open a new ticket instead that generally hand...
Andreas Müller
09:53 AM feature request #6607 (Resolved): Implement WebSite.accessed in TaxEditor
Katja Luther
02:44 PM feature request #6658 (Feedback): Make mediaCreated editable in Media view
Generally it works, but there is no check for correct format.
However, there are a couple of problems related to ...
Andreas Müller
01:20 PM feature request #6658: Make mediaCreated editable in Media view
the problem was that the start value of the mediaCreated field was not set correctly. It was saved but not displayed.... Katja Luther
12:37 PM feature request #6658: Make mediaCreated editable in Media view
Sorry maybe it was too early to pass to assign to me. With current version the media is not yet stored in DB and even... Andreas Müller
11:34 AM feature request #6658 (Resolved): Make mediaCreated editable in Media view
Applied in changeset commit:taxeditor|6430b43e4a5e3def3a2778bf51f5114606cda156. Katja Luther
01:27 PM bug #6627: Remaining cdm light issues
Katja Luther wrote:
> * Instance name and instance ID
>
> * TitlePageYear
>
> * ~~Collation: Wird nicht ausgeg...
Katja Luther
01:19 PM bug #6664: Deleting often does not succeed without throwing an exception
Applied in changeset commit:taxeditor|eb057b290c3a0f9c34066b5392657ce2dfc00e9b. Katja Luther
12:56 PM bug #6664 (Resolved): Deleting often does not succeed without throwing an exception
Katja Luther
12:56 PM bug #6664 (Feedback): Deleting often does not succeed without throwing an exception
The deleteHandler used the offset and length to get the annotation from the model to set it markedForDeletion, but th... Katja Luther
12:53 PM bug #6664 (Resolved): Deleting often does not succeed without throwing an exception
Applied in changeset commit:taxeditor|9efc697ec714f60e08bf87f84fb1b509d35d2780. Katja Luther
12:05 PM feature request #6724 (Closed): Popup Editor for SpecimenTypeDesignation Workingsets

This is a schematic concept for the editor UI
![](TypeFormPhycobank_v2_ak.png)
## Types Editor Component
...
Andreas Kohlbecker
12:04 PM feature request #6719 (Closed): Compact display of TypeDesignations in RegistrationItems with edit button per fieldUnit
Andreas Kohlbecker
11:35 AM feature request #6722: Make Life-form available via DerivedUnitFacade
Hi Henning, is it correct that life-form is only needed for field units, not preserved specimen? Just like ecology a... Andreas Müller
11:34 AM feature request #6722: Make Life-form available via DerivedUnitFacade
implemented in facade Andreas Müller

06/12/2017

04:52 PM feature request #6723 (New): Make available derived unit facade elements configurable in DerivedUnitFacade details view
... similar to configurable elements in NameDetailsView Andreas Müller
04:50 PM feature request #6722 (Closed): Make Life-form available via DerivedUnitFacade
... but probably as an optional element (preferences) as it is relevant only for e.g. algae.
~~First implement in ...
Andreas Müller
04:47 PM feature request #6721 (Closed): Show kindOfUnit, Sex and Lifestage also for DerivedUnits in DUFacade
... currently they are shown only for the field unit.
We first need to change this in the DerivedUnitFacade and th...
Andreas Müller
04:44 PM feature request #6720 (Closed): Make individualCount a string
Currently it is integer, but usually one needs something like 3M,4W Andreas Müller
01:39 PM feature request #6719 (In Progress): Compact display of TypeDesignations in RegistrationItems with edit button per fieldUnit
Andreas Kohlbecker
01:38 PM feature request #6719 (Closed): Compact display of TypeDesignations in RegistrationItems with edit button per fieldUnit
* type designations grouped and "deduplicated" by FieldUnit or TypifyingName
* Button to open SpecimenTypeDesignatio...
Andreas Kohlbecker
12:29 PM feature request #6718 (Duplicate): Constistent TypeDesignation representation creation
Various representations of TypeDesignations are needed in the edit platform components.
* cdm-dataportal
* #596...
Andreas Kohlbecker

06/10/2017

06:46 PM task #6717 (Closed): Rename taxonNameBaseTitleCacheIndex and taxonNameBaseNameCacheIndex
In existing databases and in code Andreas Müller
10:00 AM task #6716 (New): Better handling for UserTypes in hibernate
Maybe there is a better way now to use UserTypes. I got the idea when reading
https://developer.jboss.org/message/...
Andreas Müller
09:51 AM task #6715 (New): Can we make better use of hibernate tools?
http://tools.jboss.org/features/hibernate.html
Maybe also related: JBoss Tools: http://tools.jboss.org/downloads/...
Andreas Müller
09:03 AM task #6714 (Closed): Create 001-cdm.h2.sql automatically
Some links I found:
* How to generate Envers database schema with org.hibernate.tool.EnversSchemaGenerator? https...
Andreas Müller

06/09/2017

05:41 PM feature request #6711 (Resolved): Make initials editable in TaxEditor
Applied in changeset commit:taxeditor|48bf21fce3a4cf4fe0f0c965302dcdf28fe7a252. Katja Luther
01:00 AM feature request #6711 (Closed): Make initials editable in TaxEditor
Persons do now have a new field initials. This should be editable in TaxEditor Andreas Müller
05:35 PM feature request #6390 (New): Details view for misapplied names
Details View:
• ~~Err. Secundum bitte groß schreiben~~
• ~~„TaxonRelationship Misappl. doubtful“ bitte “TaxonRelati...
Katja Luther
05:28 PM feature request #6390 (In Progress): Details view for misapplied names
Andreas Müller
04:48 PM feature request #6390: Details view for misapplied names
AM
~~~
Details View:
• ~~Err. Secundum bitte groß schreiben~~
• ~~„TaxonRelationship Misappl. doubtful“ bitte...
Andreas Müller
05:27 PM feature request #6527 (Resolved): Refactor delete configurator for media
Andreas Müller
04:28 PM feature request #6527: Refactor delete configurator for media
please review Katja Luther
04:27 PM feature request #6527: Refactor delete configurator for media
Andreas Müller wrote:
> >· Die Option „Lösche das Medianobjekt, auch wenn es von einem Specimen verwendet wird“ vers...
Katja Luther
04:23 PM feature request #6527: Refactor delete configurator for media
Andreas Müller wrote:
> I just realized that also in the Media bulk editor CRITICAL things happen. Even if you do NO...
Katja Luther
02:35 PM feature request #6713: Remember last recently used file path for imports and exports
Hallo,
das wiederholte Eingeben des Pfades beim Export ist etwas mühsam – kann man sich das lokal (aber datenbankspe...
Andreas Müller
02:35 PM feature request #6713 (Worksforme): Remember last recently used file path for imports and exports
The path (maybe not the file itself) should be saved as preference. This should be separate for each database connect... Andreas Müller
01:44 PM feature request #6712 (New): [DISCUSS] Should we remove anamorph from TaxonName (Fungi)
According to Melbourne Code anamorph should not be used anymore, or do we need it for older data.
"One fungus, o...
Andreas Müller
11:51 AM feature request #6588: Add URL and URL comment to OriginalSource / ExternalLink
started now to implement as a new class ExternalLink Andreas Müller
10:56 AM feature request #6700: Adapt dataportal to TaxonName model changes
is this still an open issue? Andreas Müller
09:48 AM feature request #6581 (In Progress): Make all microreferenced references OriginalSources
Andreas Müller

06/08/2017

07:55 PM feature request #6703: Improve title handling for media in dataportal
I think this is fixed. Can you provide changeset and set on resolved? Andreas Müller
05:45 PM feature request #6624 (Closed): Campanula related portal issues
Closed because all single issues have their own ticket Patrick Plitzner
05:43 PM feature request #6710 (New): Add default value to thumbnail label for specimen scans
default value could follow the order barcode of specimen > "scan x"
motif can often be empty because it is always ...
Patrick Plitzner
05:41 PM feature request #6709 (Closed): Do not show UUID on media page
Example: http://campanula.e-taxonomy.net/cdm_dataportal/media/ac44e4b5-4820-46bc-820e-9e414c6b52e7
media site is o...
Patrick Plitzner
05:39 PM feature request #6708 (New): Open images from specimen table in separate tab and in a viewer
Patrick Plitzner
04:26 PM bug #6707 (Duplicate): transient properties managed by ToManyRelatedEntitiesListSelect are not updated on save
The TaxonNamePopupEditor uses a ToManyRelatedEntitiesComboboxSelect to allow editing the associations to basionym nam... Andreas Kohlbecker
03:23 PM bug #6666 (Closed): Exception in SearchResultView when starting the Taxeditor
For search this seems to be fully fixed. I still get it sometimes for a database I probably never connected to with e... Andreas Müller
03:14 PM feature request #6656 (Closed): Make autonym hybrids parsable
All examples do parse correctly in the TaxEditor so I close this ticket. Andreas Müller
01:39 PM feature request #6656 (Resolved): Make autonym hybrids parsable
Applied in changeset commit:cdmlib|8b7f15a55fb9e9f229d4729ee0d82b1ccec6318b. Andreas Müller
10:16 AM feature request #6656 (Feedback): Make autonym hybrids parsable
In the TaxEditor parsing still does not work. Andreas Müller
03:11 PM bug #6669 (Closed): Duplicate menu items in several views and editor
I tested the TaxEditor a lot today and i never had. Also explicit on this issue did not find any duplicated menus. Se... Andreas Müller
02:37 PM bug #6664 (Feedback): Deleting often does not succeed without throwing an exception
It is better already but 2 things still happen.
1) If the cursor is at the end of the above described problem stil...
Andreas Müller
02:22 PM feature request #6527: Refactor delete configurator for media
I just realized that also in the Media bulk editor CRITICAL things happen. Even if you do NOT check "Delete the media... Andreas Müller
10:10 AM feature request #6527: Refactor delete configurator for media
>· Die Option „Lösche das Medianobjekt, auch wenn es von einem Specimen verwendet wird“ verstehe ich nicht ganz. Welc... Andreas Müller
09:50 AM feature request #6527 (Feedback): Refactor delete configurator for media
> „Medienobjekt“ finde ich keinen so glücklichen Begriff. Besser Mediendatensatz? Objekt klingt so nach dem eigentlic... Andreas Müller
11:14 AM bug #6657 (Feedback): Reproducable "multiple representations" exception for polytomous keys
In most cases this seems to work now. However I still have multiple strange behaviors with key "KomplexKey" on edit-t... Andreas Müller
11:12 AM bug #6706 (New): Sometimes selected taxa are not synchronized in PolytomousKey Editor
**Sometimes** when trying to add a taxon to a PolytomousKeyNode the selection works fine, the taxon is also shown in ... Andreas Müller
09:37 AM bug #6446 (Closed): Merge botanical and zoological names into TaxonNameBase in external applications
Should be fixed as it compiles and tests run. Most critical was the dataportal but also these tests run again. Andreas Müller
09:36 AM task #6445 (Closed): Remove occurrence of NonViralName in external applications (TaxEditor etc.)
Should be fixed as it compiles and tests run. Andreas Müller
09:31 AM bug #6530 (Closed): After editing a nomenclatural reference of a new created name some information is lost
Looks fine now. And it seems to be the correct way to always store all data edited in a dialog. Andreas Müller
09:30 AM bug #6502 (Resolved): LIE during request to portal/classification/{uuid}/pathFrom/{taxonNodeUUID}/toRa nk/{rankUuid}
Applied in changeset commit:cdmlib|c8363cf59437e3c1e98ecbeddb3e931d8e50dcad. Andreas Kohlbecker
09:24 AM bug #6570 (Closed): rank list should be sorted
Looks fine now. Andreas Müller
08:38 AM feature request #6368 (Closed): Merge all TaxonNameBase classes, remove DTYPE, rename table
Andreas Müller
08:35 AM feature request #3734 (Closed): Stop separating term and schema update
Andreas Müller
08:21 AM feature request #6617 (Closed): Add "Exact Value" to StatisticalMeasure
Exists in test databases Andreas Müller
08:18 AM task #6660 (Closed): Remove unique index from Rights MN tables
Andreas Müller
08:12 AM task #6226 (Closed): Delete orphaned key nodes
I checked with
~~~ sql
SELECT *
FROM PolytomousKeyNode pkn
WHERE pkn.key_id NOT IN (SELECT id FROM PolytomousKe...
Andreas Müller
08:11 AM bug #6705 (New): Remove remaining orphaned PolytomousKeyNodes
There are PKN left that are linked to an existing key but have no parent but link to a taxon (so are no root nodes).
...
Andreas Müller
07:41 AM bug #6340 (Closed): Update script for nomenclatural status types
I checked on test server for negative results with
~~~ sql
SELECT st.id
FROM NomenclaturalStatus st
INNER JOI...
Andreas Müller
07:29 AM feature request #6367 (Closed): Make NomenclaturalCode an attribute ("type") of TaxonNameBase
Andreas Müller
07:27 AM feature request #5817 (Closed): Rename RelationshipTermBase_inverseRepresentation
Andreas Müller
07:27 AM bug #5149 (Closed): Remove UNIQUE index on Sequence_Reference.citations_id column
Andreas Müller
07:23 AM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is enabled
Is there a reason why this is assigned to me? Also the status could be changed from Feedback to ? maybe? Andreas Müller

06/07/2017

11:06 PM task #6606: Import Bogota specimen data
AM:
>Type: Manchmal nur „Type“ ohne genaueren Typ. Ok? Kann man immer davon ausgehen, dass es sich um den Typus z...
Andreas Müller
11:06 PM task #6606: Import Bogota specimen data
Frage: waren das alle derzeit relevanten Belege oder ist das nur ein Auszug?
Außerdem die Antworten zu den Fragen:...
Andreas Müller
11:05 PM task #6606: Import Bogota specimen data
Hallo Grischa, Walter,
vielen Dank für die Daten. Habe sie überflogen. Sieht ziemlich gut aus. Unten Anmerkungen z...
Andreas Müller
06:44 PM task #6702 (Rejected): Post release 4.8.0 tasks
changing the name part definitions is no longer needed since commit:c2545e1c Andreas Kohlbecker
03:09 PM task #6702 (Rejected): Post release 4.8.0 tasks

## 1. check name render part definitions
The name render part definitions have changed #6700 and need to be upda...
Andreas Kohlbecker
06:16 PM feature request #6704 (New): Make profile picture clickable and opening in lightbox
This is a requirement for Flora of Greece. The result should be the same as clicking on a picture in the image gallery. Andreas Müller
05:04 PM feature request #6703 (Closed): Improve title handling for media in dataportal
Currently the dataportal prefers to display IPTC "Object Name" rather than CDM.Media.title.
The required preferenc...
Andreas Müller
02:31 PM bug #6701 (Duplicate): Add new media does not work in specimen editor
Details View says "No media attached" Patrick Plitzner
01:38 PM feature request #6700 (In Progress): Adapt dataportal to TaxonName model changes
Andreas Kohlbecker
01:38 PM feature request #6700 (Closed): Adapt dataportal to TaxonName model changes
Andreas Kohlbecker
12:41 PM task #6699 (Closed): Delete term version from CdmMetaData
It is not needed anymore
Also remove from FirstDataInserterTest.testBlankDB-result.xml
Andreas Müller
12:04 PM feature request #6694 (Resolved): Migrate FeatureTreeEditor
Patrick Plitzner
10:22 AM task #6698 (New): Check all imports if the importResult is filled correctly
Katja Luther
10:14 AM feature request #6697 (Worksforme): reconstruct getReferencingObjects to return DTOs
the most expensive part of the referencing objects view is the creation of the lables. Therefore it would be better t... Katja Luther
01:30 AM task #6696 (New): Improve architecture for Model updates
Some issues make model update work intensive and should be improved:
* Vaadin and TaxEditor still have their own ...
Andreas Müller
01:19 AM feature request #2949 (Duplicate): Simplify TaxonName classes
Andreas Müller

06/06/2017

02:59 PM feature request #3533: Prefill nomenclatural reference information if possible
Hallo Katja,
diese Funktion sollte nur diejenigen Referenzen liefern, bei denen Greuter der alleinige Autor ist. Im ...
Katja Luther
02:03 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
and this is the log of the successful push:
~~~
andreas ~/workspaces/cdm/cdm-vaadin [feature/#6687 ✓][13:07:30]
...
Andreas Kohlbecker
01:05 PM bug #6687 (In Progress): Multiple representations of the same entity merge problem
Hi Andreas,
I fully agree, this is too risky for a long term solution, but I haven't found a solution to the probe...
Andreas Kohlbecker
01:02 PM bug #6687: Multiple representations of the same entity merge problem
Hi Andreas,

diese Lösung (`hibernate.event.merge.entity_copy_observer=allow`) könnte ziemlich riskant sein. Wir h...
Andreas Kohlbecker
12:32 PM bug #6695 (Closed): module cdmlib/services should not be an osgi bundle
the module cdmlib/services has been configured as osgi bundle product:
~~~xml
<packaging>bundle</packaging>
...
...
Andreas Kohlbecker
12:03 PM feature request #6694 (Closed): Migrate FeatureTreeEditor
This should also be implemented or moved outside of the preferences Patrick Plitzner
11:38 AM feature request #6693 (Closed): Implement missing nomenclatural codes for name detail element
in class `eu.etaxonomy.taxeditor.ui.section.name.NameDetailElement`
~~~
private void createSpecificNameParts(ICdm...
Patrick Plitzner
12:01 AM feature request #6368: Merge all TaxonNameBase classes, remove DTYPE, rename table
Applied in changeset commit:cdmlib-apps|76015c3280374e0812ff99a887000483be80f18d. Andreas Müller

06/05/2017

05:08 PM feature request #6361 (Resolved): [MASTER] Merge all TaxonName classes into 1 class
Andreas Müller
05:01 PM bug #5149 (Resolved): Remove UNIQUE index on Sequence_Reference.citations_id column
Applied in changeset commit:cdmlib|06a9799d6b7ccdd74054489773c13c40539ae5e2. Andreas Müller
05:01 PM feature request #5817 (Resolved): Rename RelationshipTermBase_inverseRepresentation
Applied in changeset commit:cdmlib|696ecfe85f0a850183b534601f631c9c988d81e0. Andreas Müller
05:01 PM bug #6340 (Resolved): Update script for nomenclatural status types
Applied in changeset commit:cdmlib|8947f6981e84e4f6434b7fdcf7eac1fef6b67882. Andreas Müller
05:01 PM feature request #6472 (Resolved): Include keys as target for IntextReferences
Applied in changeset commit:cdmlib|4afd76e7642b5d023dfb9a07bad56d5c05072c81. Andreas Müller
04:52 PM task #6226 (Resolved): Delete orphaned key nodes
Andreas Müller
04:48 PM task #6226: Delete orphaned key nodes
Also need to delete orphaned key statements Andreas Müller
12:06 PM feature request #5258 (Resolved): Accessed field for WebPages
Applied in changeset commit:cdmlib|2f9732022e97eb872bef7beba334c1696ee62b7d. Andreas Müller
10:34 AM bug #6409 (Closed): Fix failing Level3 validation in ValidationTest introduced by removing TaxonNameBase subclasses
Andreas Müller
10:34 AM bug #6409 (Resolved): Fix failing Level3 validation in ValidationTest introduced by removing TaxonNameBase subclasses
Applied in changeset commit:cdmlib|5734eafe6399bc0a051e9c2575d0dcf3505bd0c3. Andreas Müller
10:27 AM task #6445 (Resolved): Remove occurrence of NonViralName in external applications (TaxEditor etc.)
Andreas Müller
10:27 AM bug #6446 (Resolved): Merge botanical and zoological names into TaxonNameBase in external applications
Andreas Müller
10:07 AM task #6671 (Closed): Remove generics from TaxonName
Andreas Müller
09:54 AM task #6370 (Rejected): Remaining issues to merge all TaxonNameBase subclasses
We won't handle any subtasks in this container ticket Andreas Müller
09:39 AM feature request #6692 (Closed): Make name types changeable
Taxon names do not use subclassing anymore but have a nameType now.
So it should be possible to change the name type...
Andreas Müller
09:36 AM feature request #6691 (Duplicate): Implement all name types in NameDetailElement
It is now possible to switch name types easily. So we should allow to edit all name types, not only ICNAFP and ICZN. Andreas Müller
09:18 AM feature request #6690 (New): Handle SchemaUpdateResult in TaxEditor
Schema updating now has an update result (#6689). The result should be shown same as for Import and Exports. Andreas Müller
09:18 AM feature request #6689 (Resolved): Implement SchemaUpdateResult instead of boolean
Andreas Müller
09:15 AM feature request #6689 (Resolved): Implement SchemaUpdateResult instead of boolean
for schema updates Andreas Müller

06/04/2017

11:00 PM feature request #3734 (Resolved): Stop separating term and schema update
Applied in changeset commit:cdmlib|0c1286dddd5638f39f78147e5a6932f900ea5798. Andreas Müller
10:17 PM feature request #4580 (In Progress): Improve SchemaUpdater
Andreas Müller

06/03/2017

07:25 PM feature request #6368 (Resolved): Merge all TaxonNameBase classes, remove DTYPE, rename table
Applied in changeset commit:cdmlib|9dc896c9a181487e9796e2ae7b0a1e2bfa9ff32a. Andreas Müller
06:32 PM bug #6688 (Duplicate): Rights do not show up in rights search if no text is given
If only agent and rights type is given (typical usecase for copyright) the right does not show up in the rights searc... Andreas Müller

06/02/2017

11:53 AM bug #6687 (Resolved): Multiple representations of the same entity merge problem
Applied in changeset commit:cdm-vaadin|754d57e3aa08265ad9b4502bf104614a5c49c574. Andreas Kohlbecker
11:40 AM bug #6687 (Closed): Multiple representations of the same entity merge problem
The `eu.etaxonomy.vaadin.mvp.AbstractCdmEditorPresenter<DTO extends CdmBase, V extends ApplicationView<?>>` class use... Andreas Kohlbecker

06/01/2017

03:50 PM bug #6686: Correct handling for chromatograms in dataportal
AM: ich bin gerade zufällig über http://campanula.e-taxonomy.net/cdm_dataportal/taxon/2e3aa801-7307-409c-bd39-d825f5f... Andreas Müller
03:44 PM bug #6686 (New): Correct handling for chromatograms in dataportal
Currently they are shown as WebApplication which is not correct.
They should clearly show that they are for downlo...
Andreas Müller
11:54 AM feature request #6536: extract name export of outputmodel export
seems that the rejected ticket was not the reason for not allowing the parent ticket to close. Keep it as it is. Andreas Müller
11:53 AM feature request #6536: extract name export of outputmodel export
add parent again just for testing Andreas Müller
10:20 AM feature request #6536 (Rejected): extract name export of outputmodel export
Katja Luther
10:19 AM feature request #6536 (Closed): extract name export of outputmodel export
Katja Luther
10:18 AM feature request #6536 (In Progress): extract name export of outputmodel export
Katja Luther
11:37 AM feature request #6314 (Closed): CDM light (csv) export implemented
Katja Luther
10:12 AM bug #6684 (Closed): Use media representation which best fits the available viewport size for the Image Overlay
The image overlay that opens when clicking on a thumbnail seems to be using the first representation even it this is ... Andreas Kohlbecker
09:23 AM bug #6683 (Closed): Use best quality media representation in image viewer on media page
The image viewer in the media page always chooses only the first representation even if this is a thumbnail image. Th... Andreas Kohlbecker

05/31/2017

03:59 PM bug #6679 (In Progress): search for misapplied names in portal does not work
Tested with cichorieae portal and it seems that the problem is the same.
The cdmlib test for testFindTaxaAndNames ...
Katja Luther
03:37 PM feature request #6527 (Resolved): Refactor delete configurator for media
Applied in changeset commit:taxeditor|55031c8b54ac487e9500d59ace74bc476a3931a1. Katja Luther
03:16 PM bug #5684 (Resolved): NPE when trying to move a presence-absence term within the vocabulary
Andreas Müller
01:03 PM bug #5684: NPE when trying to move a presence-absence term within the vocabulary
Is this still an open issue. I can't reproduce it. Katja Luther
03:12 PM feature request #6682 (Closed): Formatter and DTO for taxon relationships (e.g. misapplied names)
URGENT: Update inverse symbol for MAN rel type
We need a webservice for taxon relationships returning
* a list...
Andreas Müller
02:28 PM feature request #6681 (Closed): Correct formatting for misapplied names in name editor
Misapplied names currently show authors of names in the first line and without ", non xxx".
They should show name ...
Andreas Müller
12:47 PM bug #5639: NPE when showing name relationships for a name originally related to a deleted name
Andreas Müller wrote:
> Katja Luther wrote:
> > I could reproduce it with following settings:
> >
> > name1 has ...
Katja Luther
12:13 PM feature request #6315 (Resolved): Implement setSecundumForSubtree in TaxEditor
Applied in changeset commit:taxeditor|5d69e246c91b58746dd6228f7b39977127a2353d. Katja Luther
11:10 AM bug #6645: area data parameter missing in portal/description/distributionInfoFor response
Gibt es hier schon neue Informationen?
Das sind glaub ich die zugehörigen Log-Nachrichten vom cdm-Server
~~~
c...
Saskia Gennrich
11:03 AM bug #5394: Test if synonyms are imported correctly with ABCD import
Katja Luther wrote:
> Is there any example how a synonym looks like in ABCD?
> I could not find anything. In DwCA t...
Patrick Plitzner
10:09 AM bug #5394: Test if synonyms are imported correctly with ABCD import
Is there any example how a synonym looks like in ABCD?
I could not find anything. In DwCA there is relationshipOfRes...
Katja Luther

05/30/2017

02:48 PM bug #6657: Reproducable "multiple representations" exception for polytomous keys
This exception does not appear every time, when it appears the session debugging looks like this:
~~~ text
<<< Ro...
Katja Luther
02:47 PM bug #6657 (Resolved): Reproducable "multiple representations" exception for polytomous keys
Applied in changeset commit:taxeditor|b3f33ee9b93dfe91eb576cb7686abdc1284822df. Katja Luther
02:37 PM bug #6657: Reproducable "multiple representations" exception for polytomous keys
This exception does not appear every time, when it appears the session debugging looks like this:
~~~ text
<<< Ro...
Katja Luther
01:59 PM feature request #6680 (New): catch exception when user is expired

Hallo,
wenn der User aus irgendeinem Grund gesperrt ist, gibt es eine unschöne Fehlermeldung – vielleicht könn...
Patrick Plitzner
01:45 PM bug #6418 (Resolved): Status line does not update after completing the update of the referencing objects view
Applied in changeset commit:taxeditor|4c5cf2284f2702e33183963b617cfbf8ad5abc56. Katja Luther
12:46 PM bug #6673 (Resolved): conceptual problems with vaadin Popup editor presenters (AbstractEditorPresenter)
Applied in changeset commit:cdm-vaadin|92d4dbe04f61beac39395ea88245ecbb845ee1c9. Andreas Kohlbecker
12:33 PM bug #6679 (Closed): search for misapplied names in portal does not work
ich weiß nicht, ob wir das schon mal besprochen haben. Notfalls doppelt:
Beim Flora of Greece Portal http://portal...
Katja Luther

05/29/2017

03:35 PM discussion #6678 (In Progress): [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
Currently we can display name relationships only as "non xxx". However, for name relationships of type "orth. var." t... Andreas Müller
03:22 PM feature request #6677 (Rejected): Add "hort." flag to Botanical names
... indicating that the name is a horticultural name. Also adapt parser and cache strategy and TaxEditor.
Is it a...
Andreas Müller
03:04 PM bug #6138 (Closed): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
this was only a problem of not refreshed dataset, so I close the ticket after commit e676c6b0. Katja Luther
03:03 PM bug #6138 (Resolved): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
Applied in changeset commit:cdmlib|e676c6b0786d4bc57b88f0b87d2ad8fa0b8d1aa9. Katja Luther
02:34 PM bug #6664 (Resolved): Deleting often does not succeed without throwing an exception
Katja Luther
02:18 PM bug #6664: Deleting often does not succeed without throwing an exception
The problem is the offset of the selection when the cursor is at the beginning of the first line because the method m... Katja Luther
01:42 PM bug #6664: Deleting often does not succeed without throwing an exception
At a first view it seems to be a problem of the handling of the annotatedline editor model. sometimes the object sele... Katja Luther
02:02 PM feature request #6676 (Duplicate): A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
Since the name editor is disabled because of the missing rights the selection is not propagated to the factual data v... Patrick Plitzner
02:01 PM task #6675 (New): [DISCUSS] Linking related names in synonymy
We should discuss the expected behavior of name links in the synonymy, also how far they should be configurable.
E...
Andreas Müller
01:59 PM bug #6674 (New): Opening the bulk editor is possible although the user does not have the rights to do so
1. Login as user without the right to open any bulk editor
1. Either in the search results or in the taxon tree open...
Patrick Plitzner
12:05 PM bug #6673 (Closed): conceptual problems with vaadin Popup editor presenters (AbstractEditorPresenter)
In a vaadin application it must be possible to open multiple popup editors of the same type. For example to open an e... Andreas Kohlbecker

05/24/2017

11:40 AM feature request #6596 (Closed): Migrate specimen editor
Patrick Plitzner
11:37 AM feature request #6596: Migrate specimen editor
Implemented with
commit:taxeditor|83ec3e12d8cbf6ce375fdca87a2ab1ac4da1d0be
commit:taxeditor|6f555dc529b202a8fea234...
Patrick Plitzner
11:39 AM feature request #6672 (Closed): Migrate status line
Patrick Plitzner

05/22/2017

07:02 PM task #6671 (Closed): Remove generics from TaxonName
Andreas Müller
04:09 PM bug #6669: Duplicate menu items in several views and editor
@Andreas: Can you please check if this still happens? I think I tried all views from the "Show View" menu and all edi... Patrick Plitzner
04:07 PM bug #6669 (Resolved): Duplicate menu items in several views and editor
Applied in changeset commit:taxeditor|e1fa7fbe2c592da0b7297508d1e1a192437b9d6d. Patrick Plitzner
03:49 PM bug #6669 (Closed): Duplicate menu items in several views and editor
The first time or sometimes always when a context menu is shown there are duplicate menu items Patrick Plitzner
04:02 PM bug #6670 (New): [DISCUSS] What does the "Reporting" view do? Is it needed?
The class itself does not do anything:
~~~
/**
* Copyright (C) 2007 EDIT
* European Distributed Institute of Ta...
Patrick Plitzner
02:55 PM task #6630 (In Progress): Unify TaxonName cache strategies
Andreas Müller
01:41 PM bug #6668 (Closed): NPE in DetailsView when deleting a type specimen
1. Create a type specimen for a taxon
1. Delete the specimen in the specimen hierarchy editor
1. switch back to the...
Patrick Plitzner
01:27 PM feature request #6667 (New): Improve visual separation of search composite in specimen editor
Walter: "Erstmal finde ich immer noch die Such-Zeilen verwirrend. Ich weiß jetzt, dass es die Suche ist und nicht zu ... Patrick Plitzner
01:25 PM bug #6666 (Resolved): Exception in SearchResultView when starting the Taxeditor
fixed with commit:taxeditor|c54a89ad8a5e87fc1d078d342f1581b37ff65802. Patrick Plitzner
01:23 PM bug #6666 (Closed): Exception in SearchResultView when starting the Taxeditor
Patrick Plitzner
12:54 PM feature request #6665 (New): Add "Add specimen duplicate" context menu item to specimen editor
WGB:
Auch hier wäre natürlich eine Möglichkeit, mehrere Specimen gleichzeitig zu Isotypen zu erklären, ausgesproc...
Patrick Plitzner
12:51 PM feature request #5950: Add duplicate method for type designations
possible duplicate of #6413 Patrick Plitzner
12:35 PM task #6660: Remove unique index from Rights MN tables
Applied in changeset commit:cdmlib|8effc06ef3ae6540a8e1db60d9ada7757105c76c. Andreas Müller
12:01 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
it happened again when pushing the merge of a hotfix into develop (commit:cdm-vaadin|d825f4bf)
~~~
git push
Open...
Andreas Kohlbecker
09:48 AM bug #6664: Deleting often does not succeed without throwing an exception
Observed also in several versions before 4.7 Andreas Müller
09:47 AM bug #6664 (Closed): Deleting often does not succeed without throwing an exception
I did now observe several times that when deleting multiple objects (of the same type) in bulk editor the delete some... Andreas Müller
12:28 AM feature request #6663 (Resolved): Add required attributes to Reference to include externally managed references
Andreas Müller

05/21/2017

10:52 PM feature request #6663 (Closed): Add required attributes to Reference to include externally managed references
The required attributes were discussed in BDI Monday meeting (http://wiki.bgbm.org/bdinotes/index.php/BDI_196). They ... Andreas Müller
10:42 PM feature request #6467 (Duplicate): [DISCUSS] Abbreviated first name for person
Andreas Müller
10:36 PM feature request #6661 (Resolved): Add initials to Person
Andreas Müller
02:15 PM feature request #6661 (Closed): Add initials to Person
Usually initials are the first letters of each firstname. However, there are exceptions for East Asian names with 2 l... Andreas Müller
10:34 PM feature request #6662 (Resolved): Adapt person formatting, set initials behind lastname
Andreas Müller
10:10 PM feature request #6662 (Closed): Adapt person formatting, set initials behind lastname
... so it looks more like in bibliographic reference usage.
At the same time keep the old formatting as fulltitle ...
Andreas Müller
02:09 PM task #6660 (Resolved): Remove unique index from Rights MN tables
Andreas Müller
12:18 AM task #6660 (In Progress): Remove unique index from Rights MN tables
Andreas Müller
12:15 AM task #6660 (Closed): Remove unique index from Rights MN tables
Andreas Müller
 

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