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From 05/14/2017 to 06/12/2017

06/12/2017

04:52 PM feature request #6723 (New): Make available derived unit facade elements configurable in DerivedUnitFacade details view
... similar to configurable elements in NameDetailsView Andreas Müller
04:50 PM feature request #6722 (Closed): Make Life-form available via DerivedUnitFacade
... but probably as an optional element (preferences) as it is relevant only for e.g. algae.
~~First implement in ...
Andreas Müller
04:47 PM feature request #6721 (Closed): Show kindOfUnit, Sex and Lifestage also for DerivedUnits in DUFacade
... currently they are shown only for the field unit.
We first need to change this in the DerivedUnitFacade and th...
Andreas Müller
04:44 PM feature request #6720 (Closed): Make individualCount a string
Currently it is integer, but usually one needs something like 3M,4W Andreas Müller
01:39 PM feature request #6719 (In Progress): Compact display of TypeDesignations in RegistrationItems with edit button per fieldUnit
Andreas Kohlbecker
01:38 PM feature request #6719 (Closed): Compact display of TypeDesignations in RegistrationItems with edit button per fieldUnit
* type designations grouped and "deduplicated" by FieldUnit or TypifyingName
* Button to open SpecimenTypeDesignatio...
Andreas Kohlbecker
12:29 PM feature request #6718 (Duplicate): Constistent TypeDesignation representation creation
Various representations of TypeDesignations are needed in the edit platform components.
* cdm-dataportal
* #596...
Andreas Kohlbecker

06/10/2017

06:46 PM task #6717 (Closed): Rename taxonNameBaseTitleCacheIndex and taxonNameBaseNameCacheIndex
In existing databases and in code Andreas Müller
10:00 AM task #6716 (New): Better handling for UserTypes in hibernate
Maybe there is a better way now to use UserTypes. I got the idea when reading
https://developer.jboss.org/message/...
Andreas Müller
09:51 AM task #6715 (New): Can we make better use of hibernate tools?
http://tools.jboss.org/features/hibernate.html
Maybe also related: JBoss Tools: http://tools.jboss.org/downloads/...
Andreas Müller
09:03 AM task #6714 (Closed): Create 001-cdm.h2.sql automatically
Some links I found:
* How to generate Envers database schema with org.hibernate.tool.EnversSchemaGenerator? https...
Andreas Müller

06/09/2017

05:41 PM feature request #6711 (Resolved): Make initials editable in TaxEditor
Applied in changeset commit:taxeditor|48bf21fce3a4cf4fe0f0c965302dcdf28fe7a252. Katja Luther
01:00 AM feature request #6711 (Closed): Make initials editable in TaxEditor
Persons do now have a new field initials. This should be editable in TaxEditor Andreas Müller
05:35 PM feature request #6390 (New): Details view for misapplied names
Details View:
• ~~Err. Secundum bitte groß schreiben~~
• ~~„TaxonRelationship Misappl. doubtful“ bitte “TaxonRelati...
Katja Luther
05:28 PM feature request #6390 (In Progress): Details view for misapplied names
Andreas Müller
04:48 PM feature request #6390: Details view for misapplied names
AM
~~~
Details View:
• ~~Err. Secundum bitte groß schreiben~~
• ~~„TaxonRelationship Misappl. doubtful“ bitte...
Andreas Müller
05:27 PM feature request #6527 (Resolved): Refactor delete configurator for media
Andreas Müller
04:28 PM feature request #6527: Refactor delete configurator for media
please review Katja Luther
04:27 PM feature request #6527: Refactor delete configurator for media
Andreas Müller wrote:
> >· Die Option „Lösche das Medianobjekt, auch wenn es von einem Specimen verwendet wird“ vers...
Katja Luther
04:23 PM feature request #6527: Refactor delete configurator for media
Andreas Müller wrote:
> I just realized that also in the Media bulk editor CRITICAL things happen. Even if you do NO...
Katja Luther
02:35 PM feature request #6713: Remember last recently used file path for imports and exports
Hallo,
das wiederholte Eingeben des Pfades beim Export ist etwas mühsam – kann man sich das lokal (aber datenbankspe...
Andreas Müller
02:35 PM feature request #6713 (Worksforme): Remember last recently used file path for imports and exports
The path (maybe not the file itself) should be saved as preference. This should be separate for each database connect... Andreas Müller
01:44 PM feature request #6712 (New): [DISCUSS] Should we remove anamorph from TaxonName (Fungi)
According to Melbourne Code anamorph should not be used anymore, or do we need it for older data.
"One fungus, o...
Andreas Müller
11:51 AM feature request #6588: Add URL and URL comment to OriginalSource / ExternalLink
started now to implement as a new class ExternalLink Andreas Müller
10:56 AM feature request #6700: Adapt dataportal to TaxonName model changes
is this still an open issue? Andreas Müller
09:48 AM feature request #6581 (In Progress): Make all microreferenced references OriginalSources
Andreas Müller

06/08/2017

07:55 PM feature request #6703: Improve title handling for media in dataportal
I think this is fixed. Can you provide changeset and set on resolved? Andreas Müller
05:45 PM feature request #6624 (Closed): Campanula related portal issues
Closed because all single issues have their own ticket Patrick Plitzner
05:43 PM feature request #6710 (New): Add default value to thumbnail label for specimen scans
default value could follow the order barcode of specimen > "scan x"
motif can often be empty because it is always ...
Patrick Plitzner
05:41 PM feature request #6709 (Closed): Do not show UUID on media page
Example: http://campanula.e-taxonomy.net/cdm_dataportal/media/ac44e4b5-4820-46bc-820e-9e414c6b52e7
media site is o...
Patrick Plitzner
05:39 PM feature request #6708 (New): Open images from specimen table in separate tab and in a viewer
Patrick Plitzner
04:26 PM bug #6707 (Duplicate): transient properties managed by ToManyRelatedEntitiesListSelect are not updated on save
The TaxonNamePopupEditor uses a ToManyRelatedEntitiesComboboxSelect to allow editing the associations to basionym nam... Andreas Kohlbecker
03:23 PM bug #6666 (Closed): Exception in SearchResultView when starting the Taxeditor
For search this seems to be fully fixed. I still get it sometimes for a database I probably never connected to with e... Andreas Müller
03:14 PM feature request #6656 (Closed): Make autonym hybrids parsable
All examples do parse correctly in the TaxEditor so I close this ticket. Andreas Müller
01:39 PM feature request #6656 (Resolved): Make autonym hybrids parsable
Applied in changeset commit:cdmlib|8b7f15a55fb9e9f229d4729ee0d82b1ccec6318b. Andreas Müller
10:16 AM feature request #6656 (Feedback): Make autonym hybrids parsable
In the TaxEditor parsing still does not work. Andreas Müller
03:11 PM bug #6669 (Closed): Duplicate menu items in several views and editor
I tested the TaxEditor a lot today and i never had. Also explicit on this issue did not find any duplicated menus. Se... Andreas Müller
02:37 PM bug #6664 (Feedback): Deleting often does not succeed without throwing an exception
It is better already but 2 things still happen.
1) If the cursor is at the end of the above described problem stil...
Andreas Müller
02:22 PM feature request #6527: Refactor delete configurator for media
I just realized that also in the Media bulk editor CRITICAL things happen. Even if you do NOT check "Delete the media... Andreas Müller
10:10 AM feature request #6527: Refactor delete configurator for media
>· Die Option „Lösche das Medianobjekt, auch wenn es von einem Specimen verwendet wird“ verstehe ich nicht ganz. Welc... Andreas Müller
09:50 AM feature request #6527 (Feedback): Refactor delete configurator for media
> „Medienobjekt“ finde ich keinen so glücklichen Begriff. Besser Mediendatensatz? Objekt klingt so nach dem eigentlic... Andreas Müller
11:14 AM bug #6657 (Feedback): Reproducable "multiple representations" exception for polytomous keys
In most cases this seems to work now. However I still have multiple strange behaviors with key "KomplexKey" on edit-t... Andreas Müller
11:12 AM bug #6706 (New): Sometimes selected taxa are not synchronized in PolytomousKey Editor
**Sometimes** when trying to add a taxon to a PolytomousKeyNode the selection works fine, the taxon is also shown in ... Andreas Müller
09:37 AM bug #6446 (Closed): Merge botanical and zoological names into TaxonNameBase in external applications
Should be fixed as it compiles and tests run. Most critical was the dataportal but also these tests run again. Andreas Müller
09:36 AM task #6445 (Closed): Remove occurrence of NonViralName in external applications (TaxEditor etc.)
Should be fixed as it compiles and tests run. Andreas Müller
09:31 AM bug #6530 (Closed): After editing a nomenclatural reference of a new created name some information is lost
Looks fine now. And it seems to be the correct way to always store all data edited in a dialog. Andreas Müller
09:30 AM bug #6502 (Resolved): LIE during request to portal/classification/{uuid}/pathFrom/{taxonNodeUUID}/toRa nk/{rankUuid}
Applied in changeset commit:cdmlib|c8363cf59437e3c1e98ecbeddb3e931d8e50dcad. Andreas Kohlbecker
09:24 AM bug #6570 (Closed): rank list should be sorted
Looks fine now. Andreas Müller
08:38 AM feature request #6368 (Closed): Merge all TaxonNameBase classes, remove DTYPE, rename table
Andreas Müller
08:35 AM feature request #3734 (Closed): Stop separating term and schema update
Andreas Müller
08:21 AM feature request #6617 (Closed): Add "Exact Value" to StatisticalMeasure
Exists in test databases Andreas Müller
08:18 AM task #6660 (Closed): Remove unique index from Rights MN tables
Andreas Müller
08:12 AM task #6226 (Closed): Delete orphaned key nodes
I checked with
~~~ sql
SELECT *
FROM PolytomousKeyNode pkn
WHERE pkn.key_id NOT IN (SELECT id FROM PolytomousKe...
Andreas Müller
08:11 AM bug #6705 (New): Remove remaining orphaned PolytomousKeyNodes
There are PKN left that are linked to an existing key but have no parent but link to a taxon (so are no root nodes).
...
Andreas Müller
07:41 AM bug #6340 (Closed): Update script for nomenclatural status types
I checked on test server for negative results with
~~~ sql
SELECT st.id
FROM NomenclaturalStatus st
INNER JOI...
Andreas Müller
07:29 AM feature request #6367 (Closed): Make NomenclaturalCode an attribute ("type") of TaxonNameBase
Andreas Müller
07:27 AM feature request #5817 (Closed): Rename RelationshipTermBase_inverseRepresentation
Andreas Müller
07:27 AM bug #5149 (Closed): Remove UNIQUE index on Sequence_Reference.citations_id column
Andreas Müller
07:23 AM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is enabled
Is there a reason why this is assigned to me? Also the status could be changed from Feedback to ? maybe? Andreas Müller

06/07/2017

11:06 PM task #6606: Import Bogota specimen data
AM:
>Type: Manchmal nur „Type“ ohne genaueren Typ. Ok? Kann man immer davon ausgehen, dass es sich um den Typus z...
Andreas Müller
11:06 PM task #6606: Import Bogota specimen data
Frage: waren das alle derzeit relevanten Belege oder ist das nur ein Auszug?
Außerdem die Antworten zu den Fragen:...
Andreas Müller
11:05 PM task #6606: Import Bogota specimen data
Hallo Grischa, Walter,
vielen Dank für die Daten. Habe sie überflogen. Sieht ziemlich gut aus. Unten Anmerkungen z...
Andreas Müller
06:44 PM task #6702 (Rejected): Post release 4.8.0 tasks
changing the name part definitions is no longer needed since commit:c2545e1c Andreas Kohlbecker
03:09 PM task #6702 (Rejected): Post release 4.8.0 tasks

## 1. check name render part definitions
The name render part definitions have changed #6700 and need to be upda...
Andreas Kohlbecker
06:16 PM feature request #6704 (New): Make profile picture clickable and opening in lightbox
This is a requirement for Flora of Greece. The result should be the same as clicking on a picture in the image gallery. Andreas Müller
05:04 PM feature request #6703 (Closed): Improve title handling for media in dataportal
Currently the dataportal prefers to display IPTC "Object Name" rather than CDM.Media.title.
The required preferenc...
Andreas Müller
02:31 PM bug #6701 (Duplicate): Add new media does not work in specimen editor
Details View says "No media attached" Patrick Plitzner
01:38 PM feature request #6700 (In Progress): Adapt dataportal to TaxonName model changes
Andreas Kohlbecker
01:38 PM feature request #6700 (Closed): Adapt dataportal to TaxonName model changes
Andreas Kohlbecker
12:41 PM task #6699 (Closed): Delete term version from CdmMetaData
It is not needed anymore
Also remove from FirstDataInserterTest.testBlankDB-result.xml
Andreas Müller
12:04 PM feature request #6694 (Resolved): Migrate FeatureTreeEditor
Patrick Plitzner
10:22 AM task #6698 (New): Check all imports if the importResult is filled correctly
Katja Luther
10:14 AM feature request #6697 (Worksforme): reconstruct getReferencingObjects to return DTOs
the most expensive part of the referencing objects view is the creation of the lables. Therefore it would be better t... Katja Luther
01:30 AM task #6696 (New): Improve architecture for Model updates
Some issues make model update work intensive and should be improved:
* Vaadin and TaxEditor still have their own ...
Andreas Müller
01:19 AM feature request #2949 (Duplicate): Simplify TaxonName classes
Andreas Müller

06/06/2017

02:59 PM feature request #3533: Prefill nomenclatural reference information if possible
Hallo Katja,
diese Funktion sollte nur diejenigen Referenzen liefern, bei denen Greuter der alleinige Autor ist. Im ...
Katja Luther
02:03 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
and this is the log of the successful push:
~~~
andreas ~/workspaces/cdm/cdm-vaadin [feature/#6687 ✓][13:07:30]
...
Andreas Kohlbecker
01:05 PM bug #6687 (In Progress): Multiple representations of the same entity merge problem
Hi Andreas,
I fully agree, this is too risky for a long term solution, but I haven't found a solution to the probe...
Andreas Kohlbecker
01:02 PM bug #6687: Multiple representations of the same entity merge problem
Hi Andreas,

diese Lösung (`hibernate.event.merge.entity_copy_observer=allow`) könnte ziemlich riskant sein. Wir h...
Andreas Kohlbecker
12:32 PM bug #6695 (Closed): module cdmlib/services should not be an osgi bundle
the module cdmlib/services has been configured as osgi bundle product:
~~~xml
<packaging>bundle</packaging>
...
...
Andreas Kohlbecker
12:03 PM feature request #6694 (Closed): Migrate FeatureTreeEditor
This should also be implemented or moved outside of the preferences Patrick Plitzner
11:38 AM feature request #6693 (Closed): Implement missing nomenclatural codes for name detail element
in class `eu.etaxonomy.taxeditor.ui.section.name.NameDetailElement`
~~~
private void createSpecificNameParts(ICdm...
Patrick Plitzner
12:01 AM feature request #6368: Merge all TaxonNameBase classes, remove DTYPE, rename table
Applied in changeset commit:cdmlib-apps|76015c3280374e0812ff99a887000483be80f18d. Andreas Müller

06/05/2017

05:08 PM feature request #6361 (Resolved): [MASTER] Merge all TaxonName classes into 1 class
Andreas Müller
05:01 PM bug #5149 (Resolved): Remove UNIQUE index on Sequence_Reference.citations_id column
Applied in changeset commit:cdmlib|06a9799d6b7ccdd74054489773c13c40539ae5e2. Andreas Müller
05:01 PM feature request #5817 (Resolved): Rename RelationshipTermBase_inverseRepresentation
Applied in changeset commit:cdmlib|696ecfe85f0a850183b534601f631c9c988d81e0. Andreas Müller
05:01 PM bug #6340 (Resolved): Update script for nomenclatural status types
Applied in changeset commit:cdmlib|8947f6981e84e4f6434b7fdcf7eac1fef6b67882. Andreas Müller
05:01 PM feature request #6472 (Resolved): Include keys as target for IntextReferences
Applied in changeset commit:cdmlib|4afd76e7642b5d023dfb9a07bad56d5c05072c81. Andreas Müller
04:52 PM task #6226 (Resolved): Delete orphaned key nodes
Andreas Müller
04:48 PM task #6226: Delete orphaned key nodes
Also need to delete orphaned key statements Andreas Müller
12:06 PM feature request #5258 (Resolved): Accessed field for WebPages
Applied in changeset commit:cdmlib|2f9732022e97eb872bef7beba334c1696ee62b7d. Andreas Müller
10:34 AM bug #6409 (Closed): Fix failing Level3 validation in ValidationTest introduced by removing TaxonNameBase subclasses
Andreas Müller
10:34 AM bug #6409 (Resolved): Fix failing Level3 validation in ValidationTest introduced by removing TaxonNameBase subclasses
Applied in changeset commit:cdmlib|5734eafe6399bc0a051e9c2575d0dcf3505bd0c3. Andreas Müller
10:27 AM task #6445 (Resolved): Remove occurrence of NonViralName in external applications (TaxEditor etc.)
Andreas Müller
10:27 AM bug #6446 (Resolved): Merge botanical and zoological names into TaxonNameBase in external applications
Andreas Müller
10:07 AM task #6671 (Closed): Remove generics from TaxonName
Andreas Müller
09:54 AM task #6370 (Rejected): Remaining issues to merge all TaxonNameBase subclasses
We won't handle any subtasks in this container ticket Andreas Müller
09:39 AM feature request #6692 (Closed): Make name types changeable
Taxon names do not use subclassing anymore but have a nameType now.
So it should be possible to change the name type...
Andreas Müller
09:36 AM feature request #6691 (Duplicate): Implement all name types in NameDetailElement
It is now possible to switch name types easily. So we should allow to edit all name types, not only ICNAFP and ICZN. Andreas Müller
09:18 AM feature request #6690 (New): Handle SchemaUpdateResult in TaxEditor
Schema updating now has an update result (#6689). The result should be shown same as for Import and Exports. Andreas Müller
09:18 AM feature request #6689 (Resolved): Implement SchemaUpdateResult instead of boolean
Andreas Müller
09:15 AM feature request #6689 (Resolved): Implement SchemaUpdateResult instead of boolean
for schema updates Andreas Müller

06/04/2017

11:00 PM feature request #3734 (Resolved): Stop separating term and schema update
Applied in changeset commit:cdmlib|0c1286dddd5638f39f78147e5a6932f900ea5798. Andreas Müller
10:17 PM feature request #4580 (In Progress): Improve SchemaUpdater
Andreas Müller

06/03/2017

07:25 PM feature request #6368 (Resolved): Merge all TaxonNameBase classes, remove DTYPE, rename table
Applied in changeset commit:cdmlib|9dc896c9a181487e9796e2ae7b0a1e2bfa9ff32a. Andreas Müller
06:32 PM bug #6688 (Duplicate): Rights do not show up in rights search if no text is given
If only agent and rights type is given (typical usecase for copyright) the right does not show up in the rights searc... Andreas Müller

06/02/2017

11:53 AM bug #6687 (Resolved): Multiple representations of the same entity merge problem
Applied in changeset commit:cdm-vaadin|754d57e3aa08265ad9b4502bf104614a5c49c574. Andreas Kohlbecker
11:40 AM bug #6687 (Closed): Multiple representations of the same entity merge problem
The `eu.etaxonomy.vaadin.mvp.AbstractCdmEditorPresenter<DTO extends CdmBase, V extends ApplicationView<?>>` class use... Andreas Kohlbecker

06/01/2017

03:50 PM bug #6686: Correct handling for chromatograms in dataportal
AM: ich bin gerade zufällig über http://campanula.e-taxonomy.net/cdm_dataportal/taxon/2e3aa801-7307-409c-bd39-d825f5f... Andreas Müller
03:44 PM bug #6686 (New): Correct handling for chromatograms in dataportal
Currently they are shown as WebApplication which is not correct.
They should clearly show that they are for downlo...
Andreas Müller
11:54 AM feature request #6536: extract name export of outputmodel export
seems that the rejected ticket was not the reason for not allowing the parent ticket to close. Keep it as it is. Andreas Müller
11:53 AM feature request #6536: extract name export of outputmodel export
add parent again just for testing Andreas Müller
10:20 AM feature request #6536 (Rejected): extract name export of outputmodel export
Katja Luther
10:19 AM feature request #6536 (Closed): extract name export of outputmodel export
Katja Luther
10:18 AM feature request #6536 (In Progress): extract name export of outputmodel export
Katja Luther
11:37 AM feature request #6314 (Closed): CDM light (csv) export implemented
Katja Luther
10:12 AM bug #6684 (Closed): Use media representation which best fits the available viewport size for the Image Overlay
The image overlay that opens when clicking on a thumbnail seems to be using the first representation even it this is ... Andreas Kohlbecker
09:23 AM bug #6683 (Closed): Use best quality media representation in image viewer on media page
The image viewer in the media page always chooses only the first representation even if this is a thumbnail image. Th... Andreas Kohlbecker

05/31/2017

03:59 PM bug #6679 (In Progress): search for misapplied names in portal does not work
Tested with cichorieae portal and it seems that the problem is the same.
The cdmlib test for testFindTaxaAndNames ...
Katja Luther
03:37 PM feature request #6527 (Resolved): Refactor delete configurator for media
Applied in changeset commit:taxeditor|55031c8b54ac487e9500d59ace74bc476a3931a1. Katja Luther
03:16 PM bug #5684 (Resolved): NPE when trying to move a presence-absence term within the vocabulary
Andreas Müller
01:03 PM bug #5684: NPE when trying to move a presence-absence term within the vocabulary
Is this still an open issue. I can't reproduce it. Katja Luther
03:12 PM feature request #6682 (Closed): Formatter and DTO for taxon relationships (e.g. misapplied names)
URGENT: Update inverse symbol for MAN rel type
We need a webservice for taxon relationships returning
* a list...
Andreas Müller
02:28 PM feature request #6681 (Closed): Correct formatting for misapplied names in name editor
Misapplied names currently show authors of names in the first line and without ", non xxx".
They should show name ...
Andreas Müller
12:47 PM bug #5639: NPE when showing name relationships for a name originally related to a deleted name
Andreas Müller wrote:
> Katja Luther wrote:
> > I could reproduce it with following settings:
> >
> > name1 has ...
Katja Luther
12:13 PM feature request #6315 (Resolved): Implement setSecundumForSubtree in TaxEditor
Applied in changeset commit:taxeditor|5d69e246c91b58746dd6228f7b39977127a2353d. Katja Luther
11:10 AM bug #6645: area data parameter missing in portal/description/distributionInfoFor response
Gibt es hier schon neue Informationen?
Das sind glaub ich die zugehörigen Log-Nachrichten vom cdm-Server
~~~
c...
Saskia Gennrich
11:03 AM bug #5394: Test if synonyms are imported correctly with ABCD import
Katja Luther wrote:
> Is there any example how a synonym looks like in ABCD?
> I could not find anything. In DwCA t...
Patrick Plitzner
10:09 AM bug #5394: Test if synonyms are imported correctly with ABCD import
Is there any example how a synonym looks like in ABCD?
I could not find anything. In DwCA there is relationshipOfRes...
Katja Luther

05/30/2017

02:48 PM bug #6657: Reproducable "multiple representations" exception for polytomous keys
This exception does not appear every time, when it appears the session debugging looks like this:
~~~ text
<<< Ro...
Katja Luther
02:47 PM bug #6657 (Resolved): Reproducable "multiple representations" exception for polytomous keys
Applied in changeset commit:taxeditor|b3f33ee9b93dfe91eb576cb7686abdc1284822df. Katja Luther
02:37 PM bug #6657: Reproducable "multiple representations" exception for polytomous keys
This exception does not appear every time, when it appears the session debugging looks like this:
~~~ text
<<< Ro...
Katja Luther
01:59 PM feature request #6680 (New): catch exception when user is expired

Hallo,
wenn der User aus irgendeinem Grund gesperrt ist, gibt es eine unschöne Fehlermeldung – vielleicht könn...
Patrick Plitzner
01:45 PM bug #6418 (Resolved): Status line does not update after completing the update of the referencing objects view
Applied in changeset commit:taxeditor|4c5cf2284f2702e33183963b617cfbf8ad5abc56. Katja Luther
12:46 PM bug #6673 (Resolved): conceptual problems with vaadin Popup editor presenters (AbstractEditorPresenter)
Applied in changeset commit:cdm-vaadin|92d4dbe04f61beac39395ea88245ecbb845ee1c9. Andreas Kohlbecker
12:33 PM bug #6679 (Closed): search for misapplied names in portal does not work
ich weiß nicht, ob wir das schon mal besprochen haben. Notfalls doppelt:
Beim Flora of Greece Portal http://portal...
Katja Luther

05/29/2017

03:35 PM discussion #6678 (In Progress): [DISCUSS] How to correctly show name relationship "orth. var." in dataportal
Currently we can display name relationships only as "non xxx". However, for name relationships of type "orth. var." t... Andreas Müller
03:22 PM feature request #6677 (Rejected): Add "hort." flag to Botanical names
... indicating that the name is a horticultural name. Also adapt parser and cache strategy and TaxEditor.
Is it a...
Andreas Müller
03:04 PM bug #6138 (Closed): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
this was only a problem of not refreshed dataset, so I close the ticket after commit e676c6b0. Katja Luther
03:03 PM bug #6138 (Resolved): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
Applied in changeset commit:cdmlib|e676c6b0786d4bc57b88f0b87d2ad8fa0b8d1aa9. Katja Luther
02:34 PM bug #6664 (Resolved): Deleting often does not succeed without throwing an exception
Katja Luther
02:18 PM bug #6664: Deleting often does not succeed without throwing an exception
The problem is the offset of the selection when the cursor is at the beginning of the first line because the method m... Katja Luther
01:42 PM bug #6664: Deleting often does not succeed without throwing an exception
At a first view it seems to be a problem of the handling of the annotatedline editor model. sometimes the object sele... Katja Luther
02:02 PM feature request #6676 (Duplicate): A user with READ access to taxa but WRITE access to factual data cannot update the factual view via the name editor
Since the name editor is disabled because of the missing rights the selection is not propagated to the factual data v... Patrick Plitzner
02:01 PM task #6675 (New): [DISCUSS] Linking related names in synonymy
We should discuss the expected behavior of name links in the synonymy, also how far they should be configurable.
E...
Andreas Müller
01:59 PM bug #6674 (New): Opening the bulk editor is possible although the user does not have the rights to do so
1. Login as user without the right to open any bulk editor
1. Either in the search results or in the taxon tree open...
Patrick Plitzner
12:05 PM bug #6673 (Closed): conceptual problems with vaadin Popup editor presenters (AbstractEditorPresenter)
In a vaadin application it must be possible to open multiple popup editors of the same type. For example to open an e... Andreas Kohlbecker

05/24/2017

11:40 AM feature request #6596 (Closed): Migrate specimen editor
Patrick Plitzner
11:37 AM feature request #6596: Migrate specimen editor
Implemented with
commit:taxeditor|83ec3e12d8cbf6ce375fdca87a2ab1ac4da1d0be
commit:taxeditor|6f555dc529b202a8fea234...
Patrick Plitzner
11:39 AM feature request #6672 (Closed): Migrate status line
Patrick Plitzner

05/22/2017

07:02 PM task #6671 (Closed): Remove generics from TaxonName
Andreas Müller
04:09 PM bug #6669: Duplicate menu items in several views and editor
@Andreas: Can you please check if this still happens? I think I tried all views from the "Show View" menu and all edi... Patrick Plitzner
04:07 PM bug #6669 (Resolved): Duplicate menu items in several views and editor
Applied in changeset commit:taxeditor|e1fa7fbe2c592da0b7297508d1e1a192437b9d6d. Patrick Plitzner
03:49 PM bug #6669 (Closed): Duplicate menu items in several views and editor
The first time or sometimes always when a context menu is shown there are duplicate menu items Patrick Plitzner
04:02 PM bug #6670 (New): [DISCUSS] What does the "Reporting" view do? Is it needed?
The class itself does not do anything:
~~~
/**
* Copyright (C) 2007 EDIT
* European Distributed Institute of Ta...
Patrick Plitzner
02:55 PM task #6630 (In Progress): Unify TaxonName cache strategies
Andreas Müller
01:41 PM bug #6668 (Closed): NPE in DetailsView when deleting a type specimen
1. Create a type specimen for a taxon
1. Delete the specimen in the specimen hierarchy editor
1. switch back to the...
Patrick Plitzner
01:27 PM feature request #6667 (New): Improve visual separation of search composite in specimen editor
Walter: "Erstmal finde ich immer noch die Such-Zeilen verwirrend. Ich weiß jetzt, dass es die Suche ist und nicht zu ... Patrick Plitzner
01:25 PM bug #6666 (Resolved): Exception in SearchResultView when starting the Taxeditor
fixed with commit:taxeditor|c54a89ad8a5e87fc1d078d342f1581b37ff65802. Patrick Plitzner
01:23 PM bug #6666 (Closed): Exception in SearchResultView when starting the Taxeditor
Patrick Plitzner
12:54 PM feature request #6665 (New): Add "Add specimen duplicate" context menu item to specimen editor
WGB:
Auch hier wäre natürlich eine Möglichkeit, mehrere Specimen gleichzeitig zu Isotypen zu erklären, ausgesproc...
Patrick Plitzner
12:51 PM feature request #5950: Add duplicate method for type designations
possible duplicate of #6413 Patrick Plitzner
12:35 PM task #6660: Remove unique index from Rights MN tables
Applied in changeset commit:cdmlib|8effc06ef3ae6540a8e1db60d9ada7757105c76c. Andreas Müller
12:01 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
it happened again when pushing the merge of a hotfix into develop (commit:cdm-vaadin|d825f4bf)
~~~
git push
Open...
Andreas Kohlbecker
09:48 AM bug #6664: Deleting often does not succeed without throwing an exception
Observed also in several versions before 4.7 Andreas Müller
09:47 AM bug #6664 (Closed): Deleting often does not succeed without throwing an exception
I did now observe several times that when deleting multiple objects (of the same type) in bulk editor the delete some... Andreas Müller
12:28 AM feature request #6663 (Resolved): Add required attributes to Reference to include externally managed references
Andreas Müller

05/21/2017

10:52 PM feature request #6663 (Closed): Add required attributes to Reference to include externally managed references
The required attributes were discussed in BDI Monday meeting (http://wiki.bgbm.org/bdinotes/index.php/BDI_196). They ... Andreas Müller
10:42 PM feature request #6467 (Duplicate): [DISCUSS] Abbreviated first name for person
Andreas Müller
10:36 PM feature request #6661 (Resolved): Add initials to Person
Andreas Müller
02:15 PM feature request #6661 (Closed): Add initials to Person
Usually initials are the first letters of each firstname. However, there are exceptions for East Asian names with 2 l... Andreas Müller
10:34 PM feature request #6662 (Resolved): Adapt person formatting, set initials behind lastname
Andreas Müller
10:10 PM feature request #6662 (Closed): Adapt person formatting, set initials behind lastname
... so it looks more like in bibliographic reference usage.
At the same time keep the old formatting as fulltitle ...
Andreas Müller
02:09 PM task #6660 (Resolved): Remove unique index from Rights MN tables
Andreas Müller
12:18 AM task #6660 (In Progress): Remove unique index from Rights MN tables
Andreas Müller
12:15 AM task #6660 (Closed): Remove unique index from Rights MN tables
Andreas Müller

05/20/2017

03:31 PM feature request #6659 (Closed): Show mediaCreated in dataportal
The field Media.mediaCreated is currently not shown in the dataportal but should. It should be added to the image gal... Andreas Müller
03:24 PM feature request #6658 (Closed): Make mediaCreated editable in Media view
Media has beside CdmBase.created another data called Media.mediaCreated.
This needs to be editable but currently i...
Andreas Müller

05/19/2017

08:11 PM bug #6657 (Worksforme): Reproducable "multiple representations" exception for polytomous keys
When trying to exchange or delete the taxon link in a polytomous key you get an multiple representations exception:
...
Andreas Müller
02:23 PM feature request #6653 (Closed): add more base maps to the data portal
Andreas Kohlbecker
02:23 PM feature request #6653 (Resolved): add more base maps to the data portal
Applied in changeset commit:cdm-dataportal|4213b101b6fdf713976ef08afbdaaa1ca443f825. Andreas Kohlbecker
11:05 AM feature request #6653 (Closed): add more base maps to the data portal
Maps to be added:
* http://maps.stamen.com/#terrain
* https://opentopomap.org/#map=8/37.7577/23.0109
Also ad...
Andreas Kohlbecker
01:48 PM feature request #6656 (Resolved): Make autonym hybrids parsable
Applied in changeset commit:cdmlib|607c4d511b7dacb25760d4dc6c42df10b3c5b8ef. Andreas Müller
01:01 PM feature request #6656 (In Progress): Make autonym hybrids parsable
Andreas Müller
01:00 PM feature request #6656 (Closed): Make autonym hybrids parsable
e.g. Ophrys ×kastelli E. Klein nothosubsp. kastelli or
Ophrys ×baumanniana Soó nothosubsp. baumanniana
Serapias ×...
Andreas Müller
11:54 AM feature request #6655 (Rejected): Implement a RegistrationManager with state machine
## RegistrationManager
**UPDATE: this idea has been rejected in favour of granting per entity permissions to subm...
Andreas Kohlbecker
11:30 AM feature request #6654 (Closed): implement a CdmPermissionVoter for Registrations
Registrations need to be protected by a RegistrationsVoter which evaluates CRUD permissions given to users or Groups... Andreas Kohlbecker

05/18/2017

04:35 PM bug #6652 (New): [Discuss] misapplied names: hide protologue icon
a.mueller:
> Zu Misapplied Name: Verstehe ich das richtig, dass du auch folgende Anzeige falsch findest:

![](i...
Andreas Kohlbecker
04:30 PM bug #6651 (Closed): the protologue icon should be shown directly after the nomenclatural reference
Andreas Kohlbecker
04:29 PM bug #6651 (Resolved): the protologue icon should be shown directly after the nomenclatural reference
Applied in changeset commit:cdm-dataportal|c266a8feb496e41c39d4e9bb4a97670db9bcc092. Andreas Kohlbecker
04:23 PM bug #6651 (Closed): the protologue icon should be shown directly after the nomenclatural reference
![](image001.png)
![](image002.png)
Der Link zum “Protolog” steht nach der sec. Referenz – das erweckt den Eind...
Andreas Kohlbecker
03:40 PM bug #6650 (New): Hide empty Bibliography block
The bibliography block is always shown even if it is empty - better hide the empty block Andreas Kohlbecker
02:45 PM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is enabled
Andreas Kohlbecker wrote:
> During the BGBM User-Group meeting we decided to place a footnote key at the page title....
Andreas Müller
02:01 PM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is enabled
During the BGBM User-Group meeting we decided to place a footnote key at the page title.
The footnode text will be...
Andreas Kohlbecker
02:32 PM feature request #6649 (New): search results: accepted taxa, synonyms, excluded, incertae sedis and douptful taxa need to be clearly distinguishable
* accepted Taxa: `font-weight=bold`
* synonyms: `font-weight=normal`
* excluded: prefix taxon title cache with `[e...
Andreas Kohlbecker
02:27 PM feature request #6648 (New): Display of excluded and incertae sedis information in the taxon page
## Display of **excluded**:
* show **excluded from {parent taxon} in {classification}** below page title
* option...
Andreas Kohlbecker
02:22 PM feature request #6647 (New): Search filters for excluded and incertae sedis
* implement search filters for excluded and incertae sedis for
* advanced search
* simple search
* provide op...
Andreas Kohlbecker
11:07 AM feature request #6646 (New): Reference of Taxonnode needs to be editable in Editor
The Taxonnode has a reference which needs to be editable Katja Luther

05/17/2017

06:34 PM bug #6608 (Resolved): Setting the 'Bounding box' for the OSM layer no longer works
Applied in changeset commit:cdm-dataportal|46de7f4cd0ac2f2b6900ad117d370dbd1a25566c. Andreas Kohlbecker
06:33 PM bug #6608: Setting the 'Bounding box' for the OSM layer no longer works
update it works in the release 4.7.0 in a limited way:
setting `8.931641,30.067916,39.341797,47.039254` causes the...
Andreas Kohlbecker
05:18 PM bug #6645 (Closed): area data parameter missing in portal/description/distributionInfoFor response
This problem seems to be specific to the Fauna Europaea data.
http://test.e-taxonomy.eu/cdmserver/fauna_europa...
Andreas Kohlbecker
05:09 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
The remote: lines disppear if the curl command in the post-commit hook is started with the `-s` option.
Changing t...
Andreas Kohlbecker
04:43 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
It occurred once again, this time we have a debug log:
~~~
git push
OpenSSH_6.6.1, OpenSSL 1.0.1f 6 Jan 2014
de...
Andreas Kohlbecker
04:00 PM feature request #6644 (New): Adapt sortindex updater and cache updater to new ImportResult infrastructure
Andreas Müller
02:20 PM bug #6214: Add project specific preferences to CdmPreference menu
I do not understand why Andreas Müller
02:02 PM bug #6643 (New): fix message shown in case the shown taxon is not in the chosen classification
Wenn man dann den Namen in der nicht-dargestellte Klassifikation auswählt, erhält man den korrekten Record, aber mit ... Andreas Kohlbecker
01:50 PM bug #6078 (Resolved): import of references in specimen search
needs to be checked if really everything is imported correctly Katja Luther
01:45 PM task #6612: Implement dao and service class for Registrations
As this is in the model change branch it goes into 4.8 Andreas Müller
01:30 PM feature request #6573 (Closed): Option to define a wms overlay layer for the openlayers map viewer
released and tested - works as expected. Andreas Kohlbecker
01:30 PM feature request #6642 (New): Map settings: TextArea for defining the sld_body
Implement TextArea in which the Admin can supply sld for the wms base and overlay layers
User sld_body or sld wms ...
Andreas Kohlbecker
01:23 PM feature request #6636 (Resolved): First version of RIS reference import (e.g. for Endnote import)
First version is implemented. Move open issues to new ticket for 4.8 Andreas Müller
10:58 AM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
the IOResultBase needs to implement Serializable otherwise the attributes of the superclass are not transmitted. Katja Luther
12:54 PM bug #6281 (Closed): delete synonym with annotations throws exception
added the test and close the ticket Katja Luther
11:02 AM bug #6281: delete synonym with annotations throws exception
There is a test on cdmlib side but no at editor side. I will create one. Katja Luther
11:00 AM feature request #6640 (Resolved): Integrate RIS Import in taxEditor
the problem with the not transmitted parts of the result is fixed by revision 529e3037 Katja Luther

05/16/2017

05:51 PM bug #6562: vaadin mvp framwork presenters without view
This problem is causing the presenters to receive EditorSaveEvent from foreign views. Andreas Kohlbecker
04:55 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
to day it is more severe than before a lot of release jobs have failed due to this in the final step of committing th... Andreas Kohlbecker
02:00 PM feature request #6640: Integrate RIS Import in taxEditor
The integration is done, but there is a problem with the IOInfo List (i.e. warnings), they are filled till the Import... Katja Luther
10:08 AM feature request #6640 (In Progress): Integrate RIS Import in taxEditor
Andreas Müller
09:16 AM feature request #6640 (Closed): Integrate RIS Import in taxEditor
The RIS Import should be available in TaxEditor Katja Luther
10:17 AM bug #6641 (New): On single tab pages the bibliography is not shown on the bottom
If specimen, images or keys come after "general" in the tab order of a single tab (no tab) taxon page the bibliograph... Andreas Müller

05/15/2017

02:52 PM bug #6639 (Closed): Context menu of Specimen Editor is missing entries
Patrick Plitzner
02:48 PM bug #6639 (Resolved): Context menu of Specimen Editor is missing entries
Applied in changeset commit:taxeditor|0628723f829ddc244bedfe48ce9ffdff9e6531d1. Patrick Plitzner
02:44 PM bug #6639 (Closed): Context menu of Specimen Editor is missing entries
Patrick Plitzner
 

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