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From 04/23/2017 to 05/22/2017

05/22/2017

07:02 PM task #6671 (Closed): Remove generics from TaxonName
Andreas Müller
04:09 PM bug #6669: Duplicate menu items in several views and editor
@Andreas: Can you please check if this still happens? I think I tried all views from the "Show View" menu and all edi... Patrick Plitzner
04:07 PM bug #6669 (Resolved): Duplicate menu items in several views and editor
Applied in changeset commit:taxeditor|e1fa7fbe2c592da0b7297508d1e1a192437b9d6d. Patrick Plitzner
03:49 PM bug #6669 (Closed): Duplicate menu items in several views and editor
The first time or sometimes always when a context menu is shown there are duplicate menu items Patrick Plitzner
04:02 PM bug #6670 (New): [DISCUSS] What does the "Reporting" view do? Is it needed?
The class itself does not do anything:
~~~
/**
* Copyright (C) 2007 EDIT
* European Distributed Institute of Ta...
Patrick Plitzner
02:55 PM task #6630 (In Progress): Unify TaxonName cache strategies
Andreas Müller
01:41 PM bug #6668 (Closed): NPE in DetailsView when deleting a type specimen
1. Create a type specimen for a taxon
1. Delete the specimen in the specimen hierarchy editor
1. switch back to the...
Patrick Plitzner
01:27 PM feature request #6667 (New): Improve visual separation of search composite in specimen editor
Walter: "Erstmal finde ich immer noch die Such-Zeilen verwirrend. Ich weiß jetzt, dass es die Suche ist und nicht zu ... Patrick Plitzner
01:25 PM bug #6666 (Resolved): Exception in SearchResultView when starting the Taxeditor
fixed with commit:taxeditor|c54a89ad8a5e87fc1d078d342f1581b37ff65802. Patrick Plitzner
01:23 PM bug #6666 (Closed): Exception in SearchResultView when starting the Taxeditor
Patrick Plitzner
12:54 PM feature request #6665 (New): Add "Add specimen duplicate" context menu item to specimen editor
WGB:
Auch hier wäre natürlich eine Möglichkeit, mehrere Specimen gleichzeitig zu Isotypen zu erklären, ausgesproc...
Patrick Plitzner
12:35 PM task #6660: Remove unique index from Rights MN tables
Applied in changeset commit:cdmlib|8effc06ef3ae6540a8e1db60d9ada7757105c76c. Andreas Müller
12:01 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
it happened again when pushing the merge of a hotfix into develop (commit:cdm-vaadin|d825f4bf)
~~~
git push
Open...
Andreas Kohlbecker
09:48 AM bug #6664: Deleting often does not succeed without throwing an exception
Observed also in several versions before 4.7 Andreas Müller
09:47 AM bug #6664 (Closed): Deleting often does not succeed without throwing an exception
I did now observe several times that when deleting multiple objects (of the same type) in bulk editor the delete some... Andreas Müller

05/21/2017

12:28 AM feature request #6663 (Resolved): Add required attributes to Reference to include externally mana...
Andreas Müller
10:52 PM feature request #6663 (Closed): Add required attributes to Reference to include externally manage...
The required attributes were discussed in BDI Monday meeting (http://wiki.bgbm.org/bdinotes/index.php/BDI_196). They ... Andreas Müller
10:42 PM feature request #6467 (Duplicate): [DISCUSS] Abbreviated first name for person
Andreas Müller
10:36 PM feature request #6661 (Resolved): Add initials to Person
Andreas Müller
02:15 PM feature request #6661 (Closed): Add initials to Person
Usually initials are the first letters of each firstname. However, there are exceptions for East Asian names with 2 l... Andreas Müller
10:34 PM feature request #6662 (Resolved): Adapt person formatting, set initials behind lastname
Andreas Müller
10:10 PM feature request #6662 (Resolved): Adapt person formatting, set initials behind lastname
... so it looks more like in bibliographic reference usage.
At the same time keep the old formatting as fulltitle ...
Andreas Müller
02:09 PM task #6660 (Resolved): Remove unique index from Rights MN tables
Andreas Müller

05/20/2017

12:18 AM task #6660 (In Progress): Remove unique index from Rights MN tables
Andreas Müller
12:15 AM task #6660 (Closed): Remove unique index from Rights MN tables
Andreas Müller
03:31 PM feature request #6659 (Closed): Show mediaCreated in dataportal
The field Media.mediaCreated is currently not shown in the dataportal but should. It should be added to the image gal... Andreas Müller
03:24 PM feature request #6658 (Closed): Make mediaCreated editable in Media view
Media has beside CdmBase.created another data called Media.mediaCreated.
This needs to be editable but currently i...
Andreas Müller

05/19/2017

08:11 PM bug #6657 (Worksforme): Reproducable "multiple representations" exception for polytomous keys
When trying to exchange or delete the taxon link in a polytomous key you get an multiple representations exception:
...
Andreas Müller
02:23 PM feature request #6653 (Closed): add more base maps to the data portal
Andreas Kohlbecker
02:23 PM feature request #6653 (Resolved): add more base maps to the data portal
Applied in changeset commit:cdm-dataportal|4213b101b6fdf713976ef08afbdaaa1ca443f825. Andreas Kohlbecker
11:05 AM feature request #6653 (Closed): add more base maps to the data portal
Maps to be added:
* http://maps.stamen.com/#terrain
* https://opentopomap.org/#map=8/37.7577/23.0109
Also ad...
Andreas Kohlbecker
01:48 PM feature request #6656 (Resolved): Make autonym hybrids parsable
Applied in changeset commit:cdmlib|607c4d511b7dacb25760d4dc6c42df10b3c5b8ef. Andreas Müller
01:01 PM feature request #6656 (In Progress): Make autonym hybrids parsable
Andreas Müller
01:00 PM feature request #6656 (Closed): Make autonym hybrids parsable
e.g. Ophrys ×kastelli E. Klein nothosubsp. kastelli or
Ophrys ×baumanniana Soó nothosubsp. baumanniana
Serapias ×...
Andreas Müller
11:54 AM feature request #6655 (Rejected): Implement a RegistrationManager with state machine
## RegistrationManager
**UPDATE: this idea has been rejected in favour of granting per entity permissions to subm...
Andreas Kohlbecker
11:30 AM feature request #6654 (Closed): implement a CdmPermissionVoter for Registrations
Registrations need to be protected by a RegistrationsVoter which evaluates CRUD permissions given to users or Groups... Andreas Kohlbecker

05/18/2017

04:35 PM bug #6652 (New): [Discuss] misapplied names: hide protologue icon
a.mueller:
> Zu Misapplied Name: Verstehe ich das richtig, dass du auch folgende Anzeige falsch findest:

![](i...
Andreas Kohlbecker
04:30 PM bug #6651 (Closed): the protologue icon should be shown directly after the nomenclatural reference
Andreas Kohlbecker
04:29 PM bug #6651 (Resolved): the protologue icon should be shown directly after the nomenclatural reference
Applied in changeset commit:cdm-dataportal|c266a8feb496e41c39d4e9bb4a97670db9bcc092. Andreas Kohlbecker
04:23 PM bug #6651 (Closed): the protologue icon should be shown directly after the nomenclatural reference
![](image001.png)
![](image002.png)
Der Link zum “Protolog” steht nach der sec. Referenz – das erweckt den Eind...
Andreas Kohlbecker
03:40 PM bug #6650 (New): Hide empty Bibliography block
The bibliography block is always shown even if it is empty - better hide the empty block Andreas Kohlbecker
02:45 PM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is en...
Andreas Kohlbecker wrote:
> During the BGBM User-Group meeting we decided to place a footnote key at the page title....
Andreas Müller
02:01 PM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is en...
During the BGBM User-Group meeting we decided to place a footnote key at the page title.
The footnode text will be...
Andreas Kohlbecker
02:32 PM feature request #6649 (New): search results: accepted taxa, synonyms, excluded, incertae sedis an...
* accepted Taxa: `font-weight=bold`
* synonyms: `font-weight=normal`
* excluded: prefix taxon title cache with `[e...
Andreas Kohlbecker
02:27 PM feature request #6648 (New): Display of excluded and incertae sedis information in the taxon page
## Display of **excluded**:
* show **excluded from {parent taxon} in {classification}** below page title
* option...
Andreas Kohlbecker
02:22 PM feature request #6647 (New): Search filters for excluded and incerta sedis
* implement search filters for excluded and incertae sedis for
* advanced search
* simple search
* provide op...
Andreas Kohlbecker
11:07 AM feature request #6646 (New): Reference of Taxonnode needs to be editable in Editor
The Taxonnode has a reference which needs to be editable Katja Luther

05/17/2017

06:34 PM bug #6608 (Resolved): Setting the 'Bounding box' for the OSM layer no longer works
Applied in changeset commit:cdm-dataportal|46de7f4cd0ac2f2b6900ad117d370dbd1a25566c. Andreas Kohlbecker
06:33 PM bug #6608: Setting the 'Bounding box' for the OSM layer no longer works
update it works in the release 4.7.0 in a limited way:
setting `8.931641,30.067916,39.341797,47.039254` causes the...
Andreas Kohlbecker
05:18 PM bug #6645 (Closed): area data parameter missing in portal/description/distributionInfoFor response
This problem seems to be specific to the Fauna Europaea data.
http://test.e-taxonomy.eu/cdmserver/fauna_europa...
Andreas Kohlbecker
05:09 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
The remote: lines disppear if the curl command in the post-commit hook is started with the `-s` option.
Changing t...
Andreas Kohlbecker
04:43 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
It occurred once again, this time we have a debug log:
~~~
git push
OpenSSH_6.6.1, OpenSSL 1.0.1f 6 Jan 2014
de...
Andreas Kohlbecker
04:00 PM feature request #6644 (New): Adapt sortindex updater and cache updater to new ImportResult infras...
Andreas Müller
02:20 PM bug #6214: Add project specific preferences to CdmPreference menu
I do not understand why Andreas Müller
02:02 PM bug #6643 (New): fix message shown in case the shown taxon is not in the chosen classification
Wenn man dann den Namen in der nicht-dargestellte Klassifikation auswählt, erhält man den korrekten Record, aber mit ... Andreas Kohlbecker
01:50 PM bug #6078 (Resolved): import of references in specimen search
needs to be checked if really everything is imported correctly Katja Luther
01:45 PM task #6612: Implement dao and service class for Registrations
As this is in the model change branch it goes into 4.8 Andreas Müller
01:30 PM feature request #6573 (Closed): Option to define a wms overlay layer for the openlayers map viewer
released and tested - works as expected. Andreas Kohlbecker
01:30 PM feature request #6642 (New): Map settings: TextArea for defining the sld_body
Implement TextArea in which the Admin can supply sld for the wms base and overlay layers
User sld_body or sld wms ...
Andreas Kohlbecker
01:23 PM feature request #6636 (Resolved): First version of RIS reference import (e.g. for Endnote import)
First version is implemented. Move open issues to new ticket for 4.8 Andreas Müller
10:58 AM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
the IOResultBase needs to implement Serializable otherwise the attributes of the superclass are not transmitted. Katja Luther
12:54 PM bug #6281 (Closed): delete synonym with annotations throws exception
added the test and close the ticket Katja Luther
11:02 AM bug #6281: delete synonym with annotations throws exception
There is a test on cdmlib side but no at editor side. I will create one. Katja Luther
11:00 AM bug #6640 (Resolved): Integrate RIS Import in taxEditor
the problem with the not transmitted parts of the result is fixed by revision 529e3037 Katja Luther

05/16/2017

05:51 PM bug #6562: vaadin mvp framwork presenters without view
This problem is causing the presenters to receive EditorSaveEvent from foreign views. Andreas Kohlbecker
04:55 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
to day it is more severe than before a lot of release jobs have failed due to this in the final step of committing th... Andreas Kohlbecker
02:00 PM bug #6640: Integrate RIS Import in taxEditor
The integration is done, but there is a problem with the IOInfo List (i.e. warnings), they are filled till the Import... Katja Luther
10:08 AM bug #6640 (In Progress): Integrate RIS Import in taxEditor
Andreas Müller
09:16 AM bug #6640 (Resolved): Integrate RIS Import in taxEditor
The RIS Import should be available in TaxEditor Katja Luther
10:17 AM bug #6641 (New): On single tab pages the bibliography is not shown on the bottom
If specimen, images or keys come after "general" in the tab order of a single tab (no tab) taxon page the bibliograph... Andreas Müller

05/15/2017

02:52 PM bug #6639 (Closed): Context menu of Specimen Editor is missing entries
Patrick Plitzner
02:48 PM bug #6639 (Resolved): Context menu of Specimen Editor is missing entries
Applied in changeset commit:taxeditor|0628723f829ddc244bedfe48ce9ffdff9e6531d1. Patrick Plitzner
02:44 PM bug #6639 (Closed): Context menu of Specimen Editor is missing entries
Patrick Plitzner

05/12/2017

04:44 PM bug #6454 (Closed): NumberWithLabelElement.getFloat and .getInteger should return null
I guess this is solved because nobody ever complained after this fix so it seems like all number fields seem to work ... Patrick Plitzner
04:40 PM bug #6214 (Closed): Add project specific preferences to CdmPreference menu
This works fine.
@Katja: Could you adjust the target version if this was already solved in 3.6?
Patrick Plitzner
04:25 PM bug #6582: status bar not completely visible
It is visible in height but you still have wiggle on the separator to make it fully visible in width. Patrick Plitzner
04:01 PM bug #6614 (Closed): cdm_taxontree: plus/minus/loading gifs not correctly loaded
Sorry, forgot that I was supposed to merge it in develop.

What would be a more appropriate Subject line?
Saskia Gennrich
02:27 PM bug #6385 (Closed): Specimen Editor should handle new search same as bulk editor
seems fine Patrick Plitzner
01:56 PM bug #6638 (New): Close import wizard after showing "Open Editors" warning
Patrick Plitzner
01:53 PM feature request #6637 (New): Sort derivatives below FieldUnit level in specimen editor
Patrick Plitzner
09:17 AM feature request #6576 (Closed): Implement operation that guesses all basionyms for a syonymy
looks fine. Katja Luther

05/11/2017

05:59 PM bug #6614: cdm_taxontree: plus/minus/loading gifs not correctly loaded
So can we close the ticket?
And can you please adapt the "Subject" in a way that it is easier to read for standard...
Andreas Müller
03:20 PM bug #6614: cdm_taxontree: plus/minus/loading gifs not correctly loaded
I finally merged the branch into develop Andreas Kohlbecker
05:50 PM feature request #6636: First version of RIS reference import (e.g. for Endnote import)
https://jira.sakaiproject.org/secure/attachment/21845/RIS+Format+Specifications.pdf
https://en.wikipedia.org/wiki/...
Andreas Müller
05:33 PM feature request #6636 (Resolved): First version of RIS reference import (e.g. for Endnote import)
Andreas Müller
03:56 PM bug #6214: Add project specific preferences to CdmPreference menu
Is this solved? If yes, was it solved in 4.6 or 4.7? Andreas Müller
03:22 PM bug #6078: import of references in specimen search
is this fixed/related to other ABCD import tickets? Andreas Müller
02:09 PM feature request #6619 (Resolved): Integrate Excel distribution import into taxeditor
Applied in changeset commit:taxeditor|9313d25a2e00e474498e2713f4cb0b44245b37b1. Katja Luther
11:40 AM task #6590: Check if CdmVaadinAuthentication is a proper solution for handling authentications an...
yes it is! Andreas Kohlbecker
11:18 AM task #6590: Check if CdmVaadinAuthentication is a proper solution for handling authentications an...
is this still an open issue? Andreas Müller
11:01 AM bug #6281: delete synonym with annotations throws exception
Katja Luther wrote:
> I really tried different solutions with saving, reloading, updating but the only way to avoid ...
Andreas Müller
09:25 AM bug #6281: delete synonym with annotations throws exception
I really tried different solutions with saving, reloading, updating but the only way to avoid the exception was the f... Katja Luther
10:51 AM feature request #5088: Redirect automatically to according page when search result has exactly on...
Don't know why it is moved to Reviewed. As it is a request from several users I would keep it in Unassigned so we can... Andreas Müller
08:37 AM feature request #5088 (New): Redirect automatically to according page when search result has exac...
No *feedback* is currently needed, I rather would set the state of the ticket to **new**, *in progress* also makes no... Andreas Kohlbecker
10:44 AM bug #6480 (Resolved): Re-saved by cascade in specimen bulk editor
Katja Luther
10:43 AM bug #6480 (Feedback): Re-saved by cascade in specimen bulk editor
sorry, did not see that the problem was in bulkeditor. now I added the delete configurator to the bulk editor delete ... Katja Luther
10:39 AM bug #6480 (Resolved): Re-saved by cascade in specimen bulk editor
Applied in changeset commit:cdmlib|07dbf1bcf8687df44cd3e5fcb90acedb4a6a71f6. Katja Luther
10:17 AM task #6510 (In Progress): Import Rank labels in German and Latin
Andreas Müller
10:16 AM feature request #6516 (In Progress): Add instance name and instance ID to CDM meta data
Andreas Müller
09:26 AM bug #6530: After editing a nomenclatural reference of a new created name some information is lost
please review Katja Luther
09:12 AM feature request #6531 (Closed): Add WFO Name Identifier to Identifier Types
works Katja Luther
09:09 AM feature request #6524 (Closed): Distribtion Update for Fauna Europaea
Katja Luther
09:09 AM feature request #6524: Distribtion Update for Fauna Europaea
the import works fine, the remaining issues are moved to a follow up ticket.(#6635) Katja Luther
09:09 AM feature request #6635 (New): Remaining fauna europaea distribution update issues
* make configurable if Description should be created anew or if the old one(s) should be reused (difficult if multipl... Katja Luther
09:05 AM bug #6570 (Resolved): rank list should be sorted
Applied in changeset commit:taxeditor|3271c92d309b7cd7086c5b5ebd58632906f1361b. Katja Luther
08:59 AM bug #6570: rank list should be sorted
The map is a treemap, this is a sorted map. Katja Luther
08:31 AM bug #6122 (Closed): add titleCache service
Andreas Kohlbecker
08:30 AM bug #6111 (Closed): invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list()
Andreas Kohlbecker
08:24 AM bug #6115 (Closed): protect cdm content by drupal permission
Andreas Kohlbecker
08:22 AM bug #6255 (Closed): jenkins job cdm-webapp-HFX-FINISH fails due to merge conflict
all done and cleaned up - closing the ticket Andreas Kohlbecker
08:20 AM bug #6354 (Closed): Advanced search: non phrase search with wildcard broken
this is fixed even if the advanced search in the portal still is broken when using wildcards, this however is another... Andreas Kohlbecker
08:18 AM bug #6634 (New): Advanced search: DataPortaL always does a phrase search
Wildcards cannot be used in the advanced search since the portal always creates a phrase search string:
* test ent...
Andreas Kohlbecker
08:07 AM task #6512: document eu.etaxonomy.cdm.model.common.IIdentifiableEntity.generateTitle()
the given documentation is sufficient - ticket closed Andreas Kohlbecker
08:05 AM bug #6628 (Closed): require vaadin UIs to be explicitely enabled per cdm-webapp instance
Andreas Kohlbecker

05/10/2017

12:02 AM feature request #6531: Add WFO Name Identifier to Identifier Types
Please review Andreas Müller
11:58 PM feature request #6541 (Resolved): Implement ImportResult
Andreas Müller
11:57 PM feature request #6633 (New): Check all imports if import result is filled correctly
Andreas Müller
11:50 PM task #6612 (Closed): Implement dao and service class for Registrations
From the code it looks ok. I cleaned up some generics. Andreas Müller
11:14 PM feature request #6576: Implement operation that guesses all basionyms for a syonymy
Please review Andreas Müller
11:11 PM feature request #6632 (New): Implement basionym guesser for 2 taxa/names and/or a homotypical gro...
see #6576 for base implementation.
The further implementations may be needed for #6631 (implement in Name Editor)
Andreas Müller
11:08 PM feature request #6631 (New): Implement basionym guessing in TaxEditor
We may want to use the basionym guessing functionality (#6576) available in the Name Editor. It might be available vi... Andreas Müller
10:46 PM bug #6281: delete synonym with annotations throws exception
Anyway, the above solution seems to work for the given problem. At least, I can't reproduce any exception. Maybe you ... Andreas Müller
10:44 PM bug #6281 (Feedback): delete synonym with annotations throws exception
For me the flush feels like a dirty solution, but maybe I am wrong. I also remember that I ran into some kind of prob... Andreas Müller
09:08 PM task #2494 (New): replace garland_cichorieae_cdm_taxon_list_thumbnails by settings
Andreas Kohlbecker
09:06 PM task #5285 (Closed): Use Vaadin Spring Add-on
Andreas Kohlbecker
08:52 PM feature request #6619 (Feedback): Integrate Excel distribution import into taxeditor
The wizard can still be improved:
1. The import should show up only if "show experimental features" is switched on...
Andreas Müller
08:09 PM feature request #3533 (Feedback): Prefill nomenclatural reference information if possible
Seems to work, but maybe also Eckhard should have a look as it is an E+M requirement.
>Also the type of the refere...
Andreas Müller
07:48 PM bug #6480 (Feedback): Re-saved by cascade in specimen bulk editor
I still get the exception. Here is what I do in a bit more detail:
1. Open Specimen-Editor
1. Create FieldUnit wi...
Andreas Müller
10:23 AM bug #6480: Re-saved by cascade in specimen bulk editor
please review Katja Luther
07:20 PM bug #6540 (Closed): After changing type of reference the dialog is empty
Looks ok Andreas Müller
07:01 PM bug #6620 (Closed): [MASTER] Critical Eclipse 4 bugs
All subtasks closed. Andreas Müller
07:00 PM bug #6579 (Closed): user and usergroup menu item is missing
looks good Andreas Müller
06:59 PM bug #6604 (Closed): NPE when having simple details view switched on
looks fine Andreas Müller
06:56 PM bug #6570 (Feedback): rank list should be sorted
Unfortunately it is still in the wrong order. From the code https://dev.e-taxonomy.eu/redmine/projects/edit/repositor... Andreas Müller
06:35 PM feature request #4867 (Resolved): Add menu item for classification cloning
Andreas Müller
05:57 PM task #6630 (Closed): Unify TaxonName cache strategies
Currently we do have a name cache strategy for each taxon name sub-classes. The default cache strategy should be merg... Andreas Müller
02:35 PM bug #6629: TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher rank l...
I checked the data using the Editor and also did not find anything unusual which could cause the transmission engine ... Andreas Kohlbecker
02:31 PM bug #6629 (New): TransmissionEngineDistribution misses aggregating Uzebkistan (UZB-OO) to higher ...
Hallo,

ich habe gerade festgestellt, dass ältere Verbreitungsdaten (von 2013) in bestimmten Fällen bis heute nich...
Andreas Kohlbecker
11:27 AM bug #6493 (In Progress): Another reproducable "multiple representations" exception for name relat...
sometimes it works and sometimes not...
rebuild the usecase described above it works, but after closing, reopening, ...
Katja Luther
10:59 AM bug #6385: Specimen Editor should handle new search same as bulk editor
now cdmEntitySession.dispose() is called instead of editor.dispose(), so that only the session is closed, this metho... Katja Luther
10:59 AM bug #6385 (Resolved): Specimen Editor should handle new search same as bulk editor
Applied in changeset commit:taxeditor|9fc9ae69cbb0ca2fbed964533758650322160c6a. Katja Luther
10:12 AM bug #6530: After editing a nomenclatural reference of a new created name some information is lost
The problem is that if the object loaded in the details wizard has id = 0.
When the wizard is closed, it is not save...
Katja Luther
10:11 AM bug #6530 (Resolved): After editing a nomenclatural reference of a new created name some informat...
Applied in changeset commit:taxeditor|dcff61a3a09069d6bbbc5eb38966ac8e32e952bf. Katja Luther

05/09/2017

11:19 PM task #6612: Implement dao and service class for Registrations
... Done! Please review. Andreas Kohlbecker
10:49 AM task #6612: Implement dao and service class for Registrations
Andreas Kohlbecker wrote:
> a.mueller:
> 2) Ich verstehe die Konstruktion mit der Map nicht so ganz. Wenn Propert...
Andreas Kohlbecker
10:40 AM task #6612: Implement dao and service class for Registrations
a.mueller:
Habe die Implementierung gerade überflogen. 2 Fragen:
1) Sollten wir die alte Signatur nicht weiterh...
Andreas Kohlbecker
06:30 PM task #6535 (Resolved): MetaDataPropertyName from number to string in DB
Applied in changeset commit:cdmlib|cfe723e5bc6869c8bc0416308c54bd5caad20d2a. Andreas Müller
10:48 AM task #6535 (In Progress): MetaDataPropertyName from number to string in DB
Andreas Müller
03:09 PM bug #6530: After editing a nomenclatural reference of a new created name some information is lost
Katja Luther wrote:
> Could not reproduce it anymore.
if the taxon is not saved before editing the reference the ...
Katja Luther
03:09 PM bug #6530 (In Progress): After editing a nomenclatural reference of a new created name some infor...
Katja Luther
03:06 PM bug #6530 (Worksforme): After editing a nomenclatural reference of a new created name some inform...
Could not reproduce it anymore. Katja Luther
02:49 PM bug #6511 (Rejected): Handling of objects being referenced in a InTextReference during deleting
Reject the ticket because it works without special handling.
Tested whether the intext references are also deleted a...
Katja Luther
02:13 PM feature request #6166 (Closed): In ABCD import also import all siblings of a culture or tissue sa...
Katja Luther
01:51 PM feature request #6399 (Closed): Add admin property frequently used biocase provider
Katja Luther
01:47 PM bug #6214 (Resolved): Add project specific preferences to CdmPreference menu
Katja Luther
01:45 PM bug #6219 (In Progress): Deleting synonym is persisted immediately, but the editor is set dirty
Katja Luther
01:41 PM bug #6540 (Resolved): After changing type of reference the dialog is empty
Katja Luther
01:06 PM bug #6582 (Resolved): status bar not completely visible
Katja Luther

05/08/2017

11:23 PM feature request #6581: Make all microreferenced references OriginalSources
AK: > Viel besser sollten wir das im ValidationFramework als Rule definieren.
+1
das Ticket https://dev.e-taxono...
Andreas Müller
09:50 PM bug #6628 (Resolved): require vaadin UIs to be explicitely enabled per cdm-webapp instance
Applied in changeset commit:cdm-vaadin|10f9654c14ed8f93e981b79c0188d50034e19378. Andreas Kohlbecker
04:09 PM bug #6628 (Closed): require vaadin UIs to be explicitely enabled per cdm-webapp instance
There are reasons why it is crucial that vaadin applications are inactive in cdm-webapp instances per default unless ... Andreas Kohlbecker
03:53 PM feature request #6314: CDM light (csv) export implemented
close this ticket because the topics from the first definition of the outputmodel is implemented. Create a new ticket... Katja Luther
03:50 PM feature request #6314 (Resolved): CDM light (csv) export implemented
Applied in changeset commit:cdmlib|53eeb3a2d4d2fd8d85b8b60bf19d40072e0f1c81. Katja Luther
03:53 PM bug #6627 (Resolved): Remaining cdm light issues
* Instance name and instance ID
* ~~TitlePageYear~~ (in 5.0)
* ~~support for misapplied names~~ (in 5.0)
* ~...
Katja Luther
03:47 PM feature request #6519 (Resolved): Implement ExportResult
The implementation of ExportResult should be finished, we should check all exports if the result is filled correctly.... Katja Luther
03:47 PM feature request #6626 (New): Check all exports if the exportResult is filled correctly
Check all existing exports if they fill the exportResult correctly and all informations are available. Katja Luther

05/06/2017

10:54 AM feature request #6368 (In Progress): Merge all TaxonNameBase classes, remove DTYPE, rename table
Andreas Müller
10:53 AM feature request #6368: Merge all TaxonNameBase classes, remove DTYPE, rename table
Also update value for anamorphic from NULL to false Andreas Müller

05/05/2017

05:47 PM task #6612: Implement dao and service class for Registrations
AK: mit ist noch eine zusätzliche Anforderung an die Service Methoden eingefallen:
Beide Methoden in IRegistration...
Andreas Müller
05:45 PM task #6612 (Resolved): Implement dao and service class for Registrations
Andreas Müller
03:04 PM feature request #4452 (Closed): p2 update problem with nebula compositetable dependency
Updating the nightly build works fine Patrick Plitzner
02:29 PM feature request #4867: Add menu item for classification cloning
This is most probably solved depending on how the implementation in cdmlib looks like. For now, all available paramet... Patrick Plitzner
02:13 PM bug #6582: status bar not completely visible
this seems to be an eclipse bug: https://bugs.eclipse.org/bugs/show_bug.cgi?id=471313 Katja Luther
02:12 PM task #6625 (New): three different namings for descriptions in Campanula production: Campanula celsii
Please have a look at the data and maybe merge the different descriptions if possible Patrick Plitzner
02:10 PM feature request #6624 (Duplicate): Campanula related portal issues
* Add default value (barcode of specimen > "scan x") to thumbnail label for specimen scans (motif can often be empty ... Patrick Plitzner
01:48 PM bug #6281 (Resolved): delete synonym with annotations throws exception
Katja Luther
01:48 PM bug #6281 (In Progress): delete synonym with annotations throws exception
the last comment seems to contain the solution, after removing the synonym from the taxon, we have to call a flush. t... Katja Luther
01:46 PM bug #6281 (Resolved): delete synonym with annotations throws exception
Applied in changeset commit:cdmlib|61f0bdd22eed3defc1208178541cb8097acde82b. Katja Luther
01:30 PM bug #6281: delete synonym with annotations throws exception
Only the deletion of synonym associated to a taxon throws this exception, a synonym created in bulkeditor can be dele... Katja Luther
01:44 PM bug #6539 (Closed): Build problems for taxeditor post 4.6 release
Ticket can be closed. The whole build pipeline works fine after migration to eclipse 4. Patrick Plitzner
01:41 PM bug #6579 (Resolved): user and usergroup menu item is missing
Applied in changeset commit:taxeditor|a36d109cc808d3f8ae42a0b2d2396b8ae6554010. Patrick Plitzner
01:34 PM bug #6623 (New): formatter for bibliografic citations with citationDetail
The cdmlib misses providing string representations for References + referenceDetail. This is needed for the reference... Andreas Kohlbecker
12:08 PM feature request #6566 (Closed): Migrate main menu
Created a ticket for remaining issues. #6622
Closing this one.
Patrick Plitzner
12:03 PM feature request #6622 (Closed): Migrate remaining main menu items
Already migrated items:
* General
* Close
* Close all
* Save
* Save all
* Import
* Export
* Con...
Patrick Plitzner
11:19 AM feature request #6619 (Resolved): Integrate Excel distribution import into taxeditor
Applied in changeset commit:cdmlib|4da4f88a682075705c6483be60ef0013a77d0a8d. Katja Luther
08:50 AM feature request #6367 (Resolved): Make NomenclaturalCode an attribute ("type") of TaxonNameBase
Applied in changeset commit:cdmlib|7c119bdff8d4c68a920bc139db192df0749e9419. Andreas Müller

05/04/2017

12:23 AM task #6258: Add Registration to cdm model
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > when accessing persisted Registration I get this error:
> > ...
Andreas Müller
12:06 AM task #6258 (Resolved): Add Registration to cdm model
Andreas Müller
12:05 AM task #6258: Add Registration to cdm model
Andreas Kohlbecker wrote:
> when accessing persisted Registration I get this error:
>
should be fixed with 4c8d...
Andreas Müller
10:45 PM task #6258 (Feedback): Add Registration to cdm model
when accessing persisted Registration I get this error:
~~~
java.lang.IllegalArgumentException: EnumType Registra...
Andreas Kohlbecker
11:00 PM feature request #6617 (Resolved): Add "Exact Value" to StatisticalMeasure
Andreas Müller
10:33 PM feature request #6618 (In Progress): Add link to Structure, Property, Method(?) and Type(?)
Andreas Müller
02:47 PM feature request #6577 (Closed): Make sp. nov. parsable
seems to work. Katja Luther
02:30 PM bug #6539 (In Progress): Build problems for taxeditor post 4.6 release
Andreas Müller
02:20 PM feature request #4867: Add menu item for classification cloning
Please define open issues Andreas Müller
02:02 PM feature request #6566 (Resolved): Migrate main menu
Please create new ticket for open issues. Andreas Müller
01:39 PM bug #6556 (Rejected): After restart of the editor the previous views show errors
Won't fix because too much work. Exception occurs only once after upgrade. So we need to inform the users that the ex... Andreas Müller
01:15 PM bug #6620 (In Progress): [MASTER] Critical Eclipse 4 bugs
Andreas Müller
01:13 PM bug #6620 (Closed): [MASTER] Critical Eclipse 4 bugs
Andreas Müller
11:12 AM feature request #6619 (In Progress): Integrate Excel distribution import into taxeditor
Katja Luther
11:12 AM feature request #6619 (Resolved): Integrate Excel distribution import into taxeditor
Now the import of updated distribution data is finished we have to integrate it into the taxeditor Katja Luther
09:37 AM feature request #6524: Distribtion Update for Fauna Europaea
Saskia sent a corrected version of the file. Katja Luther
09:33 AM feature request #6616 (Feedback): Question/Discussion: update supported jquery version and remove...
Andreas Kohlbecker
09:32 AM feature request #6616: Question/Discussion: update supported jquery version and remove old/unused...
> What is the currently supported jquery version and are there plans to update it?
We use the version provided by Dr...
Andreas Kohlbecker
09:21 AM bug #6570: rank list should be sorted
Hallo Katja,
du hattest doch glaube ich an der Reihenfolge der Ränge im Name Bulkeditor beim Anlegen eines neuen N...
Katja Luther
09:11 AM bug #6614 (Feedback): cdm_taxontree: plus/minus/loading gifs not correctly loaded
Hi Saskia,
thank you for the bugfix. The commit looks good, please merge the changes into the develop branch.
A...
Andreas Kohlbecker

05/03/2017

12:54 AM bug #6579: user and usergroup menu item is missing
If you do add the separator could you please also add separator in "Show View" before "Referencing objects"? Andreas Müller
12:16 AM bug #6579 (Feedback): user and usergroup menu item is missing
works for me too. Only open issue: separators before "User" are still missing. Andreas Müller
12:41 AM bug #6088 (Closed): New reproducable multiple representations exception for name relationships
Seems to work Andreas Müller
12:27 AM task #6557 (Closed): Import Bogota data
Andreas Müller
12:20 AM bug #6586 (Closed): Duplicate menu items in name editor context menu
Seems to be fixed Andreas Müller
12:19 AM bug #6587 (Closed): Wrong order of "Window" menu
Andreas Müller
12:14 AM bug #6584 (Closed): Remove annotation and Editor navigation from perspectives/toolbar
Andreas Müller
12:01 AM feature request #6541 (In Progress): Implement ImportResult
Andreas Müller
08:38 PM feature request #6618 (Closed): Add link to Structure, Property, Method(?) and Type(?)
Characters / Features need to link to Structures and Properties to define them within an Ontology of structures and p... Andreas Müller
08:26 PM feature request #6617 (In Progress): Add "Exact Value" to StatisticalMeasure
Andreas Müller
08:26 PM feature request #6617 (Closed): Add "Exact Value" to StatisticalMeasure
Andreas Müller
07:00 PM feature request #6616 (Feedback): Question/Discussion: update supported jquery version and remove...
What is the currently supported jquery version and are there plans to update it?
I actually use jQuery/jQueryUI 1....
Saskia Gennrich
06:22 PM bug #6614 (Closed): cdm_taxontree: plus/minus/loading gifs not correctly loaded
When navigating the taxontree the small icons to close/expand the subtree disappear. The regex misses to match a ".
...
Saskia Gennrich
06:20 PM task #6613 (New): Interesting examples for good documentation
Check if these are somehow useful for us
https://www.infoq.com/articles/ci-rest-docs?utm_source=infoqWeeklyNewslet...
Andreas Müller

05/02/2017

03:49 PM task #6612 (Closed): Implement dao and service class for Registrations
open issue:
* status collection not yet evalutaten in service.page(submitter, includedStatus, ...)
Andreas Kohlbecker
09:35 AM task #5123 (Closed): Integrate remoting capability in Checklist Editor
checklist editor works in remoting, so we can close this ticket. Katja Luther
09:27 AM bug #6609: Google Map layers are not working
it seems as if the key is being accepted but in the java script console the following error is reported
~~~
unca...
Andreas Kohlbecker
09:20 AM bug #6609 (New): Google Map layers are not working

there is a bug in openlayers 2.13 which is fixed in openlayers 2.14-dev, this version used in the examples http://d...
Andreas Kohlbecker
09:26 AM bug #6584 (Resolved): Remove annotation and Editor navigation from perspectives/toolbar
Applied in changeset commit:taxeditor|261ccfdd0ab714407c5a784a0835ada1eb20d72e. Patrick Plitzner
09:19 AM bug #6608 (Closed): Setting the 'Bounding box' for the OSM layer no longer works
Andreas Kohlbecker

04/30/2017

09:55 AM feature request #6607 (Closed): Implement WebSite.accessed in TaxEditor
Andreas Müller

04/28/2017

01:00 AM feature request #6529 (Resolved): Extend WorkingSet to allow a more fine grained definiton of tax...
Andreas Müller
12:59 AM task #6258 (Resolved): Add Registration to cdm model
Andreas Müller
03:21 PM task #6258: Add Registration to cdm model
I think NomenclaturalAct is a broader term then Registration. It is also valid for existing NomenclaturalActs in publ... Andreas Müller
11:52 AM task #6258: Add Registration to cdm model
After the discussion this week I am thinking about renaming the `Registration` class to `NomenclaturalAct`, this term... Andreas Kohlbecker
12:46 AM feature request #5021: TreeNodeDropAdapterAssistant should use RemotingMoveTaxonNodeHandler
is this still an open issue? Andreas Müller
12:44 AM task #5123: Integrate remoting capability in Checklist Editor
once this is closed we can also close the according parent / master ticket Andreas Müller
12:30 AM task #5123 (In Progress): Integrate remoting capability in Checklist Editor
Andreas Müller
12:30 AM task #5123 (New): Integrate remoting capability in Checklist Editor
is this still an open issue? Andreas Müller
12:32 AM bug #5417: Search not working correctly in Bulk Editor
Patrick, Katja, could you please check if this is still an open issue Andreas Müller
12:28 AM task #5129: Implement export for remoting
is this still an open issue? Andreas Müller
12:16 AM task #6557: Import Bogota data
Created new ticket for specimen data #6606.
Still need to add logfile mail to Grischa and then can close this ticket.
Andreas Müller
12:13 AM task #6606 (Resolved): Import Bogota specimen data
Test dataset available at //BGBM-PESIHPC/Bogota/test-data-edit-20170605.xlsx
Andreas Müller
12:10 AM bug #6600: Entering User and Person throws Duplicate Entry exception
maybe this was caused by a previous corrupt hibernate_sequence for AuditEvent (#6605) Andreas Müller
11:57 PM feature request #6524: Distribtion Update for Fauna Europaea
I tested against FauEu on test server. So the result can be seen there, but it is not the final state as there were s... Andreas Müller
11:56 PM feature request #6524 (Resolved): Distribtion Update for Fauna Europaea
Katja, first version is ready and seems to work. Could you please review. Andreas Müller
09:54 AM bug #6604 (Resolved): NPE when having simple details view switched on
Applied in changeset commit:taxeditor|19b95653738a40917e5f4b9844ac71e001f6896c. Katja Luther

04/27/2017

05:39 PM bug #6303: distribution map is moving too fast
Hi Gabi this is fixed, please confirm by testing in the test portal: http://test.e-taxonomy.eu/dataportal/preview/cor... Andreas Kohlbecker
05:38 PM bug #6303 (Resolved): distribution map is moving too fast
Applied in changeset commit:cdm-dataportal|79f1762dab1ce9d2896a8e654675b40cc9eaf16d. Andreas Kohlbecker
05:19 PM bug #6303: distribution map is moving too fast
this seems to happen only when using the base layer "Metacarta Vmap0 (OSGeo server) - via fast EDIT MapProx" together... Andreas Kohlbecker
04:38 PM bug #6605 (New): Repair mechanism for hibernate_sequences
The hibernate_sequences are sometimes corrupted (e.g. today it happened in the flora bogota that the AuditEvent that ... Andreas Müller
04:22 PM bug #6604 (Closed): NPE when having simple details view switched on
~~~
login : admin
editor version : 4.6.0
server : api.cybertaxonomy.org (cybertaxonomy.org) / flora-bogota
schema...
Andreas Müller
03:15 PM bug #6603 (New): Exception Dialog for deletion of taxonNode does not show the stack trace
Katja Luther
03:02 PM feature request #6573: Option to define a wms overlay layer for the openlayers map viewer
review after the release by using teh following settings for flora-hellenica:
**baselayer wms:**
* WMS url: htt...
Andreas Kohlbecker
02:54 PM feature request #6573 (Resolved): Option to define a wms overlay layer for the openlayers map vie...
Applied in changeset commit:cdm-dataportal|cb961f9df877d9b4677bb65ad84c63695ab3d77f. Andreas Kohlbecker
02:44 PM feature request #6602 (New): Add recreation of treeindex to the tree repair mechanism
I just had the problem that an exception was thrown during creation of a new taxon node. After reopening the Editor t... Andreas Müller
02:27 PM bug #6601 (New): NPE when trying to drag&drop classification to rights editing form
I tried to edit rights for user group "Editor" in flora bogota by opening the rights editing form with right click me... Andreas Müller
02:20 PM bug #6600 (New): Entering User and Person throws Duplicate Entry exception
I tried to enter a new user and immediately add a person to it in flora bogota. When trying to save the user afterwar... Andreas Müller
01:50 PM feature request #6599 (New): [DISCUSS] Use logging facade instead of log4j
AK:
Da wir schon beim Thema Logging sind:
Warum verwenden wir in der CDMLib eigentlich keine logging facade (SLF...
Andreas Müller
01:27 PM feature request #6166 (Resolved): In ABCD import also import all siblings of a culture or tissue ...
Katja Luther
12:15 PM feature request #6314: CDM light (csv) export implemented
Katja Luther wrote:
> Discuss whether we should handle the citation facts seperate to the other simple facts because...
Katja Luther
10:51 AM feature request #6314: CDM light (csv) export implemented
Facts containing only media data we should move to an extra table. Katja Luther
10:36 AM feature request #6314: CDM light (csv) export implemented
Discuss whether we should handle the citation facts seperate to the other simple facts because it is confusing that t... Katja Luther
06:54 AM feature request #6598 (In Progress): Migrate commands and handlers
Allow all handlers to handle single and multiple selection Patrick Plitzner
06:53 AM feature request #6597 (Closed): Migrate Details View
Patrick Plitzner
06:53 AM feature request #6596 (Closed): Migrate specimen editor
Patrick Plitzner
06:52 AM feature request #6595 (Closed): Migrate name editor
Patrick Plitzner

04/26/2017

05:45 PM feature request #5752: Clean up Editor dependencies
With the commit commit:taxeditor|d4e83e37febf32601f065390770060398ec63a80. I re-added the dependencies needed for cre... Patrick Plitzner

04/25/2017

09:43 PM bug #6385 (Feedback): Specimen Editor should handle new search same as bulk editor
Andreas Müller
02:45 PM bug #6385: Specimen Editor should handle new search same as bulk editor
You should not invoke dispose() on the part because this is a UI method which is used to free any resources like hand... Patrick Plitzner
06:53 PM task #6591 (New): Use name used in source for original spelling
See #3967 for further information Andreas Müller
03:25 PM task #6590 (New): Check if CdmVaadinAuthentication is a proper solution for handling authenticati...
CdmVaadinAuthentication has been implemented (#4844) to overcome the problem of parallel login into multiple vaadin U... Andreas Kohlbecker
02:39 PM bug #6575 (Worksforme): Drag & Drop in features view does not work anymore
Seems to be already solved. Also works for Katja.
Closing ticket as "Worksforme"
Patrick Plitzner
02:22 PM task #6557: Import Bogota data
Applied in changeset commit:cdmlib-apps|f7802e9485fc42ca4716224ffc524e5022effa4f. Andreas Müller
02:12 PM bug #6579 (Resolved): user and usergroup menu item is missing
Andreas Müller
02:03 PM bug #6579 (Worksforme): user and usergroup menu item is missing
Andreas: Please try again with the lates nightly and delete `.cdmLibrary/.metadata/.plugins/org.eclipse.e4.workbench/... Patrick Plitzner
02:01 PM bug #6586 (Resolved): Duplicate menu items in name editor context menu
Applied in changeset commit:taxeditor|2fdbc4e2980b34cfcc00a46604ebdf0d0e0642de. Patrick Plitzner
01:32 PM bug #6587 (Resolved): Wrong order of "Window" menu
Applied in changeset commit:taxeditor|c7cc7a1848ff05b381b13f6e06c40d3ef52e4f4d. Patrick Plitzner

04/24/2017

10:59 PM bug #6436: [DISCUSS] TitleCache update strategy for related objects
WGB:
oh je. Vielleicht noch eine zusätzliche Möglichkeit – ein „Update“ Knopf, der auf den Teil wirkt, der im Foku...
Andreas Müller
10:46 PM feature request #6589: Handle protologue as original source with URI link
WGB: Mir aufgefallen, dass die Angabe „Protolog“ im Editor Detail eigentlich nicht richtig ist, es geht ja eigentli... Andreas Müller
10:18 PM feature request #6589 (New): Handle protologue as original source with URI link
Once #6588 and #6581 is implemented we could move protologue information from NameDescription to nomenclatural refere... Andreas Müller
10:45 PM feature request #6588: Add URL and URL comment to OriginalSource / ExternalLink
AM: Frage hierzu: Reicht eine URL ohne lieber Möglichkeit, mehrere zu setzen. Beim „Protolog haben wir ja die Möglich... Andreas Müller
10:34 PM feature request #6588: Add URL and URL comment to OriginalSource / ExternalLink
WGB:
Ein Lektotype muss ja explizit designiert (publiziert!) werden – das ist dann m.A.n. die Referenz, die in der...
Andreas Müller
07:24 PM feature request #6588 (Closed): Add URL and URL comment to OriginalSource / ExternalLink
An original source may sometimes want to link to an external link where the reference (the page in the reference) is ... Andreas Müller
10:34 PM bug #6434 (Duplicate): Add URL for TypeDesignation
Andreas Müller
10:33 PM feature request #6435 (Duplicate): [DISCUSS] Comment field for "Protolog"
Andreas Müller
07:26 PM bug #6585: Combo menu items have orange font
Remove parent ticket as this is not an e4 issue only but existed already in e3 Andreas Müller
05:39 PM bug #6585 (New): Combo menu items have orange font
Patrick Plitzner
06:26 PM bug #6587 (Closed): Wrong order of "Window" menu
Patrick Plitzner
06:25 PM bug #6586 (Closed): Duplicate menu items in name editor context menu
Patrick Plitzner
05:37 PM bug #6584 (Closed): Remove annotation and Editor navigation from perspectives/toolbar
Patrick Plitzner
05:34 PM bug #6583 (Rejected): perspective separator not movable
Patrick Plitzner
05:32 PM bug #6582 (Closed): status bar not completely visible
Patrick Plitzner
04:36 PM feature request #6581 (In Progress): Make all microreferenced references OriginalSources
Currently we have OriginalSource usually used for collections of sources while single references such as nomenclatura... Andreas Müller
09:13 AM bug #6579 (Closed): user and usergroup menu item is missing
in admin menu the items user and usergroup are missing Katja Luther

04/22/2017

01:25 AM feature request #6576 (Resolved): Implement operation that guesses all basionyms for a syonymy
Andreas Müller
01:20 AM bug #6578 (Resolved): Implement name cache for hybrid formulas
Applied in changeset commit:cdmlib|9100bd6e8e43dc39e62276b9289aacd706cfc73e. Andreas Müller
01:18 AM bug #6578 (Resolved): Implement name cache for hybrid formulas
Currently the nameCache is not filled for hybrid formulas. This is due to an error in getTaggedName which in contrary... Andreas Müller
 

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