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From 03/06/2017 to 04/04/2017

04/04/2017

11:13 PM feature request #6524: Distribtion Update for Fauna Europaea
@Katja: I do not find the area uuids in row 2. I thought to remember that they were to be found there. Do you have an... Andreas Müller
11:08 PM feature request #6524: Distribtion Update for Fauna Europaea
@Katja: Is there any code available defining the export format?
Also we should add an example Excel file to cdmlib-i...
Andreas Müller
11:00 PM task #6557 (Closed): Import Bogota data
Import checklist and later import specimen data
Open issues:

* ~~capital family names~~
* ~~deduplication~~
...
Andreas Müller
02:51 PM bug #6556 (Rejected): After restart of the editor the previous views show errors
The reload of the previous loaded views does not work.
Following exception is shown: No editor descriptor for id org...
Katja Luther
02:37 PM bug #6552 (Closed): Remove "Run" menu from editor
Fixed with commit:taxeditor|b953b4f0c90978509f972bd65b7fa34a0d8434a1. Patrick Plitzner
02:30 PM feature request #6536: extract name export of outputmodel export
do we really need an extra ticket for this or can we close it as rejected or duplicate? Andreas Müller
02:29 PM feature request #6314: CDM light (csv) export implemented
~~WGB: Eine allgemeine Sache noch: Beim Import/Verlinkung in Access wird ein die Zeile abschließendes Semikolon in de... Andreas Müller
02:28 PM feature request #6314: CDM light (csv) export implemented
WGB:
zu Tropicos Format. Ich wüsste nicht, dass das irgendwo dokumentiert ist. Mir fällt dazu ein:
Für jeden Einz...
Andreas Müller
11:57 AM bug #6480 (In Progress): Re-saved by cascade in specimen bulk editor
Katja Luther
11:57 AM bug #6480: Re-saved by cascade in specimen bulk editor
I don't get an exception, but I have to close the Specimen Editor to see the result. Katja Luther
11:42 AM bug #6489 (Resolved): Selection dialogs should not show the already selected elements for Synonym and TaxonNode operations
Applied in changeset commit:taxeditor|2dbc30eaaedd811da55371f5bc173d6ada3c8485.
when the actual object is set in t...
Katja Luther
11:01 AM bug #6383: fatal error on git push: The remote end hung up unexpectedly
Today I observed something interesting. I pushed some changes to edit-community and it took quite some time ... after... Andreas Kohlbecker
10:59 AM bug #6553 (Closed): eclipse 4 problem while creating controls for name editor
This is a follow up exception of #6550
Can be closed with fixing #6550
Patrick Plitzner
10:43 AM bug #6555 (Rejected): open specimen search wizard does not work
was only a problem in my workspace Katja Luther
09:16 AM bug #6555 (Rejected): open specimen search wizard does not work
clicking on specimen search in import wizard shows only the selected wizard could not be started. Katja Luther
10:43 AM bug #6549 (Closed): ClassCastException when adding a new synonym in name editor
Patrick Plitzner
10:42 AM bug #6550 (Closed): ArrayIndexOutOfBoundsException when opening a taxon with double click from the navigator
Patrick Plitzner
10:42 AM bug #6550: ArrayIndexOutOfBoundsException when opening a taxon with double click from the navigator
The fix is avoids the exception but does not really remove the cause of the problem. But since we are anyway migratin... Patrick Plitzner
10:31 AM bug #6550 (Resolved): ArrayIndexOutOfBoundsException when opening a taxon with double click from the navigator
Applied in changeset commit:taxeditor|6252f4f075fdd0b0fd271ede49e82f5904ee83dd. Patrick Plitzner

04/03/2017

05:40 PM feature request #5030: Implement new dto object for TaxonNavigator
This is a general issue not only related to Remoting Andreas Müller
04:07 PM feature request #6554 (In Progress): The details views are newly created with every change of the focus
With every focus change the details view is created completely new. this leads to performance problems.
===
We...
Katja Luther
02:03 PM bug #6553 (Closed): eclipse 4 problem while creating controls for name editor
~~~ text
2017-04-03 13:59:28,913 ERROR [java.lang.Class] - There is an error in the implementation. There should hav...
Katja Luther
01:40 PM bug #6550: ArrayIndexOutOfBoundsException when opening a taxon with double click from the navigator
on windows I also get the ArrayIndexOutOfBoundsException with the right click menu:
~~~
java.lang.ArrayIndexOutOf...
Katja Luther
12:34 PM bug #6550 (Closed): ArrayIndexOutOfBoundsException when opening a taxon with double click from the navigator
Opening a taxon via right-click menu works fine.
~~~
!ENTRY org.eclipse.e4.ui.workbench 4 0 2017-04-03 12:32:15.5...
Patrick Plitzner
12:42 PM bug #6552 (Closed): Remove "Run" menu from editor
Patrick Plitzner
12:39 PM bug #6551 (Worksforme): Invalid parts
The following messages occur during startup
~~~
!MESSAGE Removing part descriptor with the 'eu.etaxonomy.taxedi...
Patrick Plitzner
12:24 PM bug #6549 (Resolved): ClassCastException when adding a new synonym in name editor
Applied in changeset commit:taxeditor|98b22c11b756de3b32e723e1d888d2f2dbe5df5e. Patrick Plitzner
12:23 PM bug #6549 (Closed): ClassCastException when adding a new synonym in name editor
Patrick Plitzner
12:07 PM bug #6548 (Closed): NPE in DeduplicationHelper
NPE in DeduplicationHelper.merge(). Probably this comes when an object referenced by its uuid is already deleted. The... Katja Luther
10:56 AM feature request #6314: CDM light (csv) export implemented
missing or not working:
- ~~protologue uri~~
- ~~nomenclatural status~~
- ~~die Reference_ID der Nomenklatur...
Katja Luther

03/31/2017

10:11 AM bug #5211: Error when creating new taxon /problem with sortindex in taxon tree
I tried to move the sortIndex updater to hibernate saveOrUpdate listener in hope that the list is update at that poin... Andreas Müller

03/30/2017

04:57 PM bug #6546 (In Progress): Adding identifier does not always work
Andreas Müller
11:47 AM bug #6546 (In Progress): Adding identifier does not always work
Probably this is related to the size() problem in PersistentLists (see #5211): If a PersistentList is detached (not b... Andreas Müller
02:49 PM feature request #6547 (Closed): Implement excluded and unplaced in taxon navigator
They should both be put to the end (first unplaced then excluded) (maybe this exists already) and should be visualize... Andreas Müller

03/29/2017

04:19 PM bug #5211 (In Progress): Error when creating new taxon /problem with sortindex in taxon tree
Andreas Müller
04:10 PM bug #5211: Error when creating new taxon /problem with sortindex in taxon tree
The main problem here is that the hibernate implementation of List (PersistentList) has a strange behavior in the siz... Andreas Müller
03:22 PM bug #5211 (New): Error when creating new taxon /problem with sortindex in taxon tree
we have to reopen this ticket.
Henning created a new taxon, which had the sortindex -1.
Hallo, beim Überarbeite...
Katja Luther
04:12 PM bug #6545 (Closed): [MASTER] Eclipse 4 bugs
Master ticket for bugs that occured after the switch to Eclipse 4
Most bugs should be fixed by removing the usage ...
Patrick Plitzner
12:08 PM bug #6424: Empty name creates problem/NPE in name editor
Can you please leave a message if you have changed the message mentioned in comment #10 somehow? Andreas Müller
10:52 AM bug #6424 (Closed): Empty name creates problem/NPE in name editor
Katja Luther
11:10 AM bug #6544 (New): Bulkeditor for Rights
Now Rights are reusable, to have the possibility to deduplicate and edit them we need a bulk editor for rights. Katja Luther
11:08 AM bug #6262 (Closed): Implement Rights reusable in TaxEditor
Katja Luther
10:49 AM feature request #6308 (Resolved): Add configuration dialog for the deletion of synonyms in name editor
Applied in changeset commit:taxeditor|7b179f568172320789260f76997e1c3c688845f5. Katja Luther

03/28/2017

10:53 AM feature request #4452: p2 update problem with nebula compositetable dependency
With the change to eclipse neon we have to check if the update still works because I have also used the latest releas... Patrick Plitzner
10:52 AM feature request #6314: CDM light (csv) export implemented
added the infraspecific and infrageneric rank abbreviation > Revision 11d3f2a9 Katja Luther

03/27/2017

02:19 PM bug #6543: [DISCUSS] If a reference has only a protected titleCache nothing is shown in the name editor, should be the titleCache displayed instead?
If a reference has no abbrevTitleCache, the titleCache should be shown in the nomenclatural reference section of the ... Katja Luther
02:15 PM bug #6543 (New): [DISCUSS] If a reference has only a protected titleCache nothing is shown in the name editor, should be the titleCache displayed instead?
Katja Luther
02:16 PM bug #6449 (Closed): Nomenclatural references with protected titleCache are not shown correctly in name editor
There is still the problem, that with an empty abbrevTitleCache nothing is shown in the name editor. This is an edito... Katja Luther
02:09 PM bug #4390 (Closed): Titlecache of field unit does not update when changing field unit data via derived unit facade
Katja Luther
01:57 PM bug #6088 (Resolved): New reproducable multiple representations exception for name relationships
Applied in changeset commit:taxeditor|1b127be6e5ec70fdcadce991f0a9fd154953e1fe. Katja Luther
12:45 PM feature request #6525 (Duplicate): WFO Name Identifier import
This is a duplicate for #6542 Andreas Müller
12:43 PM feature request #6542: Import identifier for Nepenthaceae names
we still should adapt the import to use the new ImportResult (#6541) structure Andreas Müller
12:38 PM feature request #6542 (Resolved): Import identifier for Nepenthaceae names
Applied in changeset commit:cdmlib|0e62dfd8bbd48842e06fba0475349701289f225a. Anonymous
12:31 PM feature request #6542 (Resolved): Import identifier for Nepenthaceae names
Andreas Müller

03/24/2017

04:33 PM feature request #6541 (Resolved): Implement ImportResult
Andreas Müller
10:25 AM bug #6540 (Closed): After changing type of reference the dialog is empty
mail von Walter:
Hallo,
im Detail-View die Referenz aufgerufen – Typ von Artikel auf Book geändert; Resultat: Lee...
Katja Luther

03/23/2017

05:51 PM bug #6539 (Closed): Build problems for taxeditor post 4.6 release
There were and still are several problems with the building the taxeditor. Some of them have to do with the switch to... Patrick Plitzner
03:07 PM feature request #6538 (Closed): Add perspectives for working character data/matrix
Add two new perspectives

1. for creating the working set and the feature tree
1. for filling out the matrix
Patrick Plitzner
10:53 AM feature request #6536 (Rejected): extract name export of outputmodel export
The scientific name export of the output model export is large, so we should extract it to is own class. Katja Luther
12:51 AM task #6535 (Closed): MetaDataPropertyName from number to string in DB
MetaDataPropertyName is stored as number in CdmMetaData. We use string for TermType at other places and should do so ... Andreas Müller
12:22 AM feature request #6534 (New): Make extended details parsable
Kannst Du Dir gelegentlich mal den Eintrag für
Nepenthes flava Wistuba, Nerz & A.Fleischm., Blumea 52(1): 159 (-1...
Andreas Müller

03/22/2017

10:25 PM bug #6533 (Closed): New taxon wizard does not refresh is excluded and excluded note information
When editing a taxon node and setting it to excluded and adding an excluded note + saving + afters calling "New taxon... Andreas Müller
10:04 PM feature request #6532: Make "&" in reference title parsable
Das & ist kein ganz leichter Fall, weil man eben aufpassen muss, es nicht mit dem & im Autorenteam zu verwechseln.
A...
Andreas Müller
10:03 PM feature request #6532 (New): Make "&" in reference title parsable
E.g. Nepenthes merrilliana Macfarl. in Trans. & Proc. Bot. Soc. Pennsylvania 2. 1911 Andreas Müller
09:59 PM bug #6530: After editing a nomenclatural reference of a new created name some information is lost
WBG:
ich habe einen merkwürdigen Bug gefunden, den es (glaube ich) früher nicht gab. Tritt jetzt zum 2. Mal auf, ...
Andreas Müller
09:49 AM bug #6530 (Closed): After editing a nomenclatural reference of a new created name some information is lost
Creating a new name and edit the nomenclatural reference before the name is saved does not work.
if the nomenclatura...
Katja Luther
08:25 PM task #6512: document eu.etaxonomy.cdm.model.common.IIdentifiableEntity.generateTitle()
Documentation added.
> For References I only get a citation string using generateTitle() not with getTitleCache()
...
Andreas Müller
08:15 PM task #6512 (Resolved): document eu.etaxonomy.cdm.model.common.IIdentifiableEntity.generateTitle()
Applied in changeset commit:cdmlib|9ff954bd55f6217c9f235c6c632a9175cdea9263. Anonymous
07:14 PM feature request #6531 (Resolved): Add WFO Name Identifier to Identifier Types
Andreas Müller
06:56 PM feature request #6531 (In Progress): Add WFO Name Identifier to Identifier Types
Andreas Müller
06:55 PM feature request #6531 (Closed): Add WFO Name Identifier to Identifier Types
048e0cf9-f59c-42dd-bfeb-3a5cba0191c7 from Nepenthes Andreas Müller

03/21/2017

06:50 PM feature request #6529 (In Progress): Extend WorkingSet to allow a more fine grained definiton of taxon set
Andreas Müller
03:56 PM feature request #6529 (Closed): Extend WorkingSet to allow a more fine grained definiton of taxon set
In our last meeting we decided to extend the WorkingSet class (see http://wiki.bgbm.org/additivity/index.php/Additivi... Patrick Plitzner
03:09 PM bug #6528 (New): Exception when deleting media in media view which is also used in a MediaSpecimen
1. Open bulk editor for media
1. Create a new media
1. Save
1. Open specimen editor
1. Create a new field unit
1...
Patrick Plitzner
02:53 PM feature request #6527 (Closed): Refactor delete configurator for media
Hallo Katja, Patrick,

ich habe gerade aus dem Media View für Taxa versucht Bilder zu löschen.

Funktio...
Patrick Plitzner
09:59 AM feature request #4639: Show quantitative data correctly in Data portal (for Cyprus portal)
Hallo Ralf,

danke für die Kontrolle.

> Bei den Strandarten, wo Min. und Max. 0 m sind, wird aber offenbar nu...
Andreas Kohlbecker
09:59 AM feature request #4639 (Closed): Show quantitative data correctly in Data portal (for Cyprus portal)
Hallo Andreas,
aus Zypern-Sicht dürfte alles umgesetzt sein. Was ich auf die Schnelle nicht überprüfen kann, sind ...
Andreas Kohlbecker

03/20/2017

04:20 PM bug #6526 (Closed): Show types in correct order
Correct order starts with Holotype –> Lectotype –> Iso(lecto)type and ends with the rest Patrick Plitzner
02:47 PM feature request #6314: CDM light (csv) export implemented
Formatting of Types is also discussed at #461 Andreas Müller
02:24 PM feature request #6525 (In Progress): WFO Name Identifier import
Andreas Müller
02:24 PM feature request #6525 (Duplicate): WFO Name Identifier import
... from a csv/Excel list of name ids/uuids and WFO Name Identifers. Andreas Müller
01:27 PM feature request #6524 (Closed): Distribtion Update for Fauna Europaea
Import the adapted distributions from a file formatted like the attached file
Open issues:
* ~~add sources~~ c...
Katja Luther

03/17/2017

09:21 AM bug #6523 (In Progress): Correct display of misspellings in synonymy
See #6523#note-26 for possible solutions that need to be discussed
Note: this is not about origial spellings (they...
Andreas Kohlbecker
08:42 AM task #6522: package cdm-server in docker container
Yesterday I found this potentially useful article on running jvm applications in docker containers: [DZone - Java Ins... Andreas Kohlbecker
08:37 AM task #6522: package cdm-server in docker container
[Saskia Gennrich]
Ob der CDM im Docker-Container als Daemon läuft oder nicht sollte ja egal sein. Man kann den Doc...
Andreas Kohlbecker
08:35 AM task #6522: package cdm-server in docker container

jsvc macht unter Docker ziemliche Probleme, an dieser Stelle sind wir auch schon stecken geblieben als wir mal auf...
Andreas Kohlbecker
08:34 AM task #6522: package cdm-server in docker container
[Saskia Gennrich]
Wir versuchen hier am Museum Teile unserer Infrastruktur mit Docker zu realisieren.
Mit jsvc ...
Andreas Kohlbecker
08:32 AM task #6522 (Closed): package cdm-server in docker container
for easier distribution of the cdm-server it would be advantageous to package the cdm-server into a docker container.... Andreas Kohlbecker
01:17 AM feature request #5974 (Closed): Remove synonym relationships
This can be closed as we are using it for longer time already. Only open issue might be that imports need to be adapt... Andreas Müller
01:16 AM task #6521 (New): Check existing imports for handling new synonym structure correctly
Copied from #5974
E+M import and data handled in #7319
Andreas Müller
12:41 AM feature request #4594: RL Webservice 7: Return taxa by Identifier
Yes it works now. Tested with http://api.cybertaxonomy.org/rl_standardliste/taxon/findByIdentifier.json?identifier=60... Andreas Müller
12:33 AM bug #6122: add titleCache service
Seems to work now. I tested with http://api.cybertaxonomy.org/cichorieae/taxon/e64a9ec7-94c8-49ee-92ba-18f2065a960a/t... Andreas Müller
12:19 AM bug #6199 (Closed): Excluded note for excluded taxon nodes in TaxEdtior
A couple of layout and workflow issues for the node wizard are now handled in #6520. So we can close this ticket. Andreas Müller
12:18 AM bug #6520 (New): Improve taxon node wizard
Current wizard has several issues:
* ~~don't call it wizard, it is only 1 form, call it dialogue, form or what ev...
Andreas Müller

03/16/2017

05:47 PM task #6258: Add Registration to cdm model
Nach abschließender Diskussion mit Henning ist klar geworden, dass der Fall mehrerer User eigentlich irrelevant ist. ... Andreas Kohlbecker
04:00 PM task #6258: Add Registration to cdm model
Aus technischer und organisatorischer Sicht ist der Submitter vor allem wichtig um die Registrierungen die zu einem U... Andreas Kohlbecker
04:00 PM task #6258: Add Registration to cdm model
Rein inhaltlich:

1. Ist es wichtig zu unterscheiden, zwischen Registrierungen von neuen Namen ...
Andreas Kohlbecker
03:59 PM task #6258: Add Registration to cdm model
Ja, das wäre ein bisschen aufwendiger. Aber sicherlich lösbar. Ein bisschen schwieriger ist der Fall bei Institutione... Andreas Kohlbecker
02:14 PM feature request #6519 (In Progress): Implement ExportResult
Katja Luther
02:13 PM feature request #6519 (Resolved): Implement ExportResult
currently exports return only boolean implement it with export result
merging of export results
Katja Luther
08:47 AM bug #6459 (Closed): Implement deduplication for IntextReferences
no open issues without a ticket, so we can close the ticket Katja Luther

03/15/2017

08:11 PM feature request #6065 (Closed): Edaphobase DTO for getTaxonById
Andreas Müller
08:10 PM feature request #6065: Edaphobase DTO for getTaxonById
Open error handling issue moved to #6518 Andreas Müller
08:06 PM bug #6071 (Closed): Handle Taxonomische Großgruppen correctly in Edaphobase
Andreas Müller
08:00 PM feature request #6134 (Closed): Allow grouping by Taxonomische Großgruppe
Andreas Müller
07:52 PM feature request #6128 (Closed): Include authorship in taxon search web service
Moved remaining issue to open minor issues: #6518 Andreas Müller
06:53 PM feature request #6133 (In Progress): Improve Rank Webservice
Andreas Müller
06:44 PM bug #6236 (Closed): Add alphabetic length ordering in name search
Andreas Müller
06:23 PM feature request #6509 (In Progress): Implement Representation csv import
Andreas Müller
11:27 AM feature request #6509 (Resolved): Implement Representation csv import
open issue
* add language into file
* make callable from Editor
Andreas Müller
06:22 PM task #6510: Import Rank labels in German and Latin
Open issues:
* some translations are still missing
* some ranks are still missing
* add to general import
Andreas Müller
11:30 AM task #6510 (Rejected): Import Rank labels in German and Latin
Open issues:
* some translations are still missing
* some ranks are still missing
* add to general import
Andreas Müller
04:51 PM feature request #6516 (In Progress): Add instance name and instance ID to CDM meta data
Andreas Müller
04:46 PM feature request #6515 (Closed): Add Tropicos and IPNI Name Identifer
Andreas Müller
04:45 PM feature request #6515 (Resolved): Add Tropicos and IPNI Name Identifer
Applied in changeset commit:cdmlib|74b2d2bdadc79592a0c0b689499fcc7c47bd353f. Andreas Müller
04:39 PM feature request #6515 (Closed): Add Tropicos and IPNI Name Identifer
Andreas Müller
04:18 PM bug #6459: Implement deduplication for IntextReferences
Katja Luther wrote:
> there are not all cases covered by the tests, especially the usecase of deleting the intextRef...
Andreas Müller
12:18 PM bug #6459 (Feedback): Implement deduplication for IntextReferences
there are not all cases covered by the tests, espacially the usecase of deleting the intextReferenceTarget.
the rest...
Katja Luther
04:16 PM bug #6511: Handling of objects being referenced in a InTextReference during deleting
As Nepenthes has intext references we should try to implement this soon. Andreas Müller
12:21 PM bug #6511 (Rejected): Handling of objects being referenced in a InTextReference during deleting
When deleting an object which is used as an intextReference target we have to skip deleting otherwise we get an Excep... Katja Luther
04:04 PM feature request #6514 (Duplicate): [Master] Implement IntextReferences
Andreas Müller
03:58 PM feature request #6514 (Duplicate): [Master] Implement IntextReferences
Andreas Müller
01:06 PM task #6512 (Worksforme): document eu.etaxonomy.cdm.model.common.IIdentifiableEntity.generateTitle()
The method IdentifiableEntity.generateTitle() is completely undocumented. For References I only get a citation string... Andreas Kohlbecker
12:57 PM feature request #6314 (In Progress): CDM light (csv) export implemented
Katja Luther
12:39 PM feature request #5554 (Closed): Allow parsing of lat/long with different minute/second characters
works fine now. Katja Luther
12:36 PM feature request #5983 (Closed): Better parsing of hybrid names
looks fine, can't find a missing possible hybrid formular. Katja Luther
09:44 AM bug #6508 (Worksforme): Rule: All TypeDesignations of a Registration must share the same citation and citationMicroreference
Andreas Kohlbecker

03/14/2017

02:28 PM bug #6507 (New): TermBase.representations still uses add not put
... we should switch to put like everywhere where we have multi-language-text. Andreas Müller
12:13 PM task #6258: Add Registration to cdm model
Andreas Müller wrote:
> Should submitted(By) really be of type "User", not of type Person, Team or Agent? Is it alwa...
Andreas Kohlbecker
12:12 PM task #6258: Add Registration to cdm model
Andreas Müller wrote:
> Can you please add information about bidirectionality.
>
> So, should a name link to it's...
Andreas Kohlbecker
08:50 AM task #6258: Add Registration to cdm model
Andreas Müller wrote:
> it is a bit against our CDM conventions. At other places we say collector and not collected ...
Andreas Kohlbecker
08:45 AM task #6258: Add Registration to cdm model
Andreas Müller wrote:
> Can you please add the Enum states required for the status?
>
> Is it ok to call the enum...
Andreas Kohlbecker
08:32 AM task #6258: Add Registration to cdm model
Andreas Kohlbecker wrote:
> A Registration without a state makes not much sense. A new Registration should have the ...
Andreas Kohlbecker
08:31 AM task #6258: Add Registration to cdm model
A Registration without a state makes not much sense. A new Registration should have the state preparation`.
The stat...
Andreas Kohlbecker
10:57 AM feature request #6504 (Closed): Bibliographic references should not start with firstname.
WGB: Wenn ich aus den Details die Liste der Referenzen aufrufe, um eine sec. Ref. einzugeben, bekomme ich eine nach V... Andreas Müller
10:30 AM feature request #6503 (New): Make LSIDs klickable
WGB:
Für den Editing Prozess wäre es aber nützlich, wenn man den Link im Editor so clickable machen könnte, dass ...
Andreas Müller
09:37 AM bug #6241: fix java doc problems in projects
AK: Ich habe auch nachgezählt bei den '@link reference not found' Problemen handelt es sich um 151 stellen die sich a... Andreas Müller
09:24 AM task #6158 (Feedback): Update EDIT documentation from svn to git
Andreas Müller wrote:
> At most places it is updated. I found some additional issues:
>
> * dataportal: link to S...
Andreas Müller
08:53 AM task #6158: Update EDIT documentation from svn to git
Andreas Müller wrote:
> Can't test yet as changes seem not to be deployed correctly yet.
The link in the descript...
Andreas Kohlbecker
08:21 AM bug #6502 (Closed): LIE during request to portal/classification/{uuid}/pathFrom/{taxonNodeUUID}/toRa nk/{rankUuid}

~~~
[integration_palmae] 2017-03-14 05:00:46,826 INFO [eu.etaxonomy.cdm.remote.controller.ClassificationPortalLi...
Andreas Kohlbecker

03/13/2017

11:26 PM task #6258: Add Registration to cdm model
Andreas Müller wrote:
> Can you please add the Enum states required for the status?
>
> Is it ok to call the enum...
Andreas Müller
11:24 PM task #6258: Add Registration to cdm model
Can you please add information about bidirectionality.
So, should a name link to it's registrations (probably yes)...
Andreas Müller
11:01 PM task #6258: Add Registration to cdm model
Should submitted(By) really be of type "User", not of type Person, Team or Agent? Is it always necessary that a submi... Andreas Müller
10:46 PM task #6258: Add Registration to cdm model
Can you please add the Enum states required for the status?
Is it ok to call the enum class RegistrationStatus?
Andreas Müller
10:26 PM task #6258: Add Registration to cdm model
it is a bit against our CDM conventions. At other places we say collector and not collected by, or combinationAuthor ... Andreas Müller
10:28 AM task #6258: Add Registration to cdm model
ist mein Favorit, Henning Wolf-Henning Kusber
10:25 AM task #6258: Add Registration to cdm model
Also *submittedBy*?
Alle einverstanden?
Andreas Kohlbecker
10:24 AM task #6258: Add Registration to cdm model
[Henning wrote]
Hallo Andreas,

ich habe grundsätzlich immer Schwierigkeiten mit solchen Substantiven.

Erst...
Andreas Kohlbecker
10:05 PM feature request #6501 (New): Improve validation rules for name types
Copied from #6363.
To improve this functionality we could add specific messages for each attribute. Also we could ...
Andreas Müller
10:04 PM feature request #6363 (Closed): Implement validation rules for all names according to their code
I tested by setting nameApprobation to not NULL for a zoological name. I could load but not save.
To improve this ...
Andreas Müller
09:55 PM task #6158: Update EDIT documentation from svn to git
Can't test yet as changes seem not to be deployed correctly yet. Andreas Müller
09:39 PM feature request #5474: TermEditor menu should be more structured
"Others" is still not translated. Is this not possible without having the terms translated?
We may have a look tog...
Andreas Müller
09:37 PM bug #5834 (Closed): Show volume etc. for generic references
Remaining issues copied to new ticket Andreas Müller
09:36 PM bug #6500 (New): Remaining issues for volume formating in generic references
This seems to be fixed for simple reference (see test "testGenericMissingVolume"). For inreferences it is unclear wha... Andreas Müller
09:26 PM bug #6375 (Closed): footnotes on sensu references must not be prefixed with 'sensu'
The example in the above comment works fine, as well as http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/... Andreas Müller
06:16 PM bug #6111: invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list()
This seems to be fixed. I checked in TaxEditor that Lactuca perennis does not have any any associatedFieldUnits, so t... Andreas Müller
06:11 PM bug #6496 (Closed): Pages not shown in biblographic reference of articles
Andreas Müller
12:55 PM bug #6496 (Resolved): Pages not shown in biblographic reference of articles
Remaining issues in new ticket Andreas Müller
10:19 AM bug #6496 (In Progress): Pages not shown in biblographic reference of articles
Andreas Müller
10:19 AM bug #6496 (Closed): Pages not shown in biblographic reference of articles
Need to add to DefaultReferenceCacheStrategy Andreas Müller
06:00 PM bug #6497 (Closed): "Open in bulkeditor" does not show up in SearchResultView
Seems to work Andreas Müller
10:56 AM bug #6497 (Resolved): "Open in bulkeditor" does not show up in SearchResultView
Applied in changeset commit:taxeditor|86e788b5138d2566facf8ba2e4a92595bde6c2ad. Patrick Plitzner
10:54 AM bug #6497 (Closed): "Open in bulkeditor" does not show up in SearchResultView
Found in 4.6-SNAPSHOT Patrick Plitzner
12:55 PM bug #6499 (In Progress): Remaining issues to include pages in bibliographic reference titleCaches
Andreas Müller
12:52 PM bug #6499 (In Progress): Remaining issues to include pages in bibliographic reference titleCaches
Open issues are:
* ~~BookSection (see FIXME in DefaultReferenceCacheStrategyTest.testBookSectionGetTitleCache)~~ =...
Andreas Müller
12:54 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
This issue once again caused a release job to be marked as failed even if it was successful: http://int.e-taxonomy.e... Andreas Kohlbecker
12:05 PM feature request #6483 (Closed): Restructure "Show view" and bulk editor menu
Patrick Plitzner
12:02 PM bug #6498 (New): Refactor dynamic bulk editor menu into a declarative one
Patrick Plitzner

03/11/2017

11:30 PM bug #3532 (Closed): Nomenclatural reference null for database
The original issue was fixed already. Added some tests and also implemented for WebPage to use URI if titleCache is e... Andreas Müller
11:29 PM bug #3532 (Resolved): Nomenclatural reference null for database
Applied in changeset commit:cdmlib|81f9e9a509cc16776b00c8d5b7b95930402ccf90. Andreas Müller
10:46 PM bug #5834: Show volume etc. for generic references
Still need to uncomment all tests of first commit. Andreas Müller
10:46 PM bug #5834: Show volume etc. for generic references
This seems to be fixed for simple reference (see test "testGenericMissingVolume"). For inreferences it is unclear wha... Andreas Müller
08:55 PM bug #6111: invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list()
Check after release if this is fixed by d8607241 Andreas Müller
08:54 PM bug #6111 (Resolved): invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list()
Applied in changeset commit:cdmlib|d86072413d61d9d60a66713c0855fc6353620057. Andreas Müller
08:25 PM feature request #6363 (Resolved): Implement validation rules for all names according to their code
Applied in changeset commit:cdmlib|3f88d296ddea2907b41f3ac100cf8fa4e15cc9d7. Andreas Müller
06:41 PM bug #6466: IndexOutOfBoundsException when entering month
There was still an open issue when the day was first set and then month for a combination that does not exist (e.g. 2... Andreas Müller
06:36 PM bug #6454 (Feedback): NumberWithLabelElement.getFloat and .getInteger should return null
Andreas Müller
06:32 PM bug #6454 (Resolved): NumberWithLabelElement.getFloat and .getInteger should return null
Applied in changeset commit:taxeditor|df566dafc6d25450bec8cabdd34ddb2fed099130. Andreas Müller
01:54 AM bug #6477 (Closed): Show collection name in specimen editor if no collection code exists
Works well Andreas Müller
01:38 AM bug #6495 (Worksforme): Fix null titleCache for E+M import
In current E+M import we do have 591 references with protected null titleCache. Need to check and fix why this is so. Andreas Müller
01:33 AM bug #6494 (Worksforme): Fix null titleCache for CoL import
After last CoL import there were 4 references with a titleCache = null. 3 of them were unreferenced (maybe added late... Andreas Müller

03/10/2017

09:22 PM bug #6493: Another reproducable "multiple representations" exception for name relationships
There was a similar reproducable issue in bulk editor in v4.5.1 but I could not reproduce this in 4.6-SNAPSHOT anymor... Andreas Müller
09:13 PM bug #6493: Another reproducable "multiple representations" exception for name relationships
~~~
login : admin
editor version : 4.6.0.201703101454
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
schem...
Andreas Müller
09:09 PM bug #6493 (Worksforme): Another reproducable "multiple representations" exception for name relationships
How to reproduce
* Open new taxon in name editor with accepted name "Correctly spelled Taxon" and synonym "Uncolle...
Andreas Müller
08:53 PM task #4338 (In Progress): [MASTER] Handle abbreviated title and protected cache correctly in TaxEditor
Andreas Müller
04:08 PM bug #6466 (Closed): IndexOutOfBoundsException when entering month
Works fine now Andreas Müller
02:02 PM bug #6466 (Resolved): IndexOutOfBoundsException when entering month
Andreas Müller
12:56 AM bug #6466 (Feedback): IndexOutOfBoundsException when entering month
Works for the given problem. But I still got an issue when entering month=2 and day = 31 (year = 1886)
~~~
login ...
Andreas Müller
03:19 PM task #6258: Add Registration to cdm model
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
>
> Maybe submitter is better than originator.
Yes I agree, ...
Andreas Müller
03:12 PM task #6258: Add Registration to cdm model
Andreas Müller wrote:
> Can you please define semantics of the new attribute a bit more. Is the person the one who...
Andreas Kohlbecker
01:16 PM task #6258: Add Registration to cdm model
Andreas Kohlbecker wrote:
> Andreas Kohlbecker wrote:
> > We need to be able to associate Registrations with Users ...
Andreas Müller
12:56 PM task #6258: Add Registration to cdm model
Andreas Kohlbecker wrote:
> We need to be able to associate Registrations with Users and CRUD of Registrations need ...
Andreas Kohlbecker
03:08 PM feature request #6483: Restructure "Show view" and bulk editor menu
Ok. Can you close this ticket and open the new one for refactoring? Andreas Müller
02:05 PM feature request #6483: Restructure "Show view" and bulk editor menu
Moving media down unfortunately is not that easy because the bulk editor menu is dynamic making it hard to reference ... Patrick Plitzner
02:50 PM bug #6477 (Resolved): Show collection name in specimen editor if no collection code exists
Applied in changeset commit:taxeditor|4f7cce8a1627211369500eca0d9f30e5a52e5293. Patrick Plitzner
02:43 PM bug #6492 (New): Right click on concept relationship does not show "Open In" menu if no record is selected yet
Example: I have a Taxon with to taxon relationships. When I click on the taxon the concept relationship view shows th... Andreas Müller
01:13 PM task #6474 (Duplicate): Move Specimen-Editor to bulk editor menu
Patrick Plitzner
01:11 PM task #4232 (Closed): Check all Comparators for fulfilling the Comparator contract
Yes then we can close the ticket.
Katja Luther
12:58 PM task #4232 (Resolved): Check all Comparators for fulfilling the Comparator contract
Probably we can close this ticket now? Andreas Müller
12:57 PM task #4232: Check all Comparators for fulfilling the Comparator contract
Andreas Müller wrote:
> KL: Bei DistributionNodeByAreaLabelComparator
>
> Würde hier auch nochmal einen weiteren ...
Andreas Müller
12:22 PM task #4232: Check all Comparators for fulfilling the Comparator contract
KL: Bei DistributionNodeByAreaLabelComparator
Würde hier auch nochmal einen weiteren Vergleich einfügen, wenn die ...
Andreas Müller
12:21 PM task #4232: Check all Comparators for fulfilling the Comparator contract
Andreas Müller wrote:
> KL: AreaNodeComparator in FloraCubaCondensedDistributionComposer
>
> Hier werden die name...
Andreas Müller
12:20 PM task #4232: Check all Comparators for fulfilling the Comparator contract
KL: AreaNodeComparator in FloraCubaCondensedDistributionComposer
Hier werden die namedAreas verglichen, indem die ...
Andreas Müller
01:02 PM bug #6488 (Resolved): Always show some label text in the specimen editor even when no information is available
Applied in changeset commit:taxeditor|f555d4cc02832475f2960d04bd605c08afa77078. Patrick Plitzner
10:12 AM bug #6488 (Closed): Always show some label text in the specimen editor even when no information is available
Fallback could be UUID or ID or both Patrick Plitzner
11:28 AM task #6271 (Duplicate): Move user and user groups from bulk editor menu to Admin menu
Andreas Müller
11:18 AM feature request #6491 (New): Show count for referencing objects
It would be nice to have a count on the results of the referencing objects view. E.g. in the status line. Andreas Müller
10:58 AM bug #6459: Implement deduplication for IntextReferences
Could you please review Andreas Müller
10:55 AM bug #6450: New reference with only the protected titleCache set is not found in reference select dialog
Maybe the concrete problem was partly fixed by #6449, but should still exist if not only the titleCache is set (as pr... Andreas Müller
10:52 AM bug #6449: Nomenclatural references with protected titleCache are not shown correctly in name editor
Fixed, that an unprotected titleCache is empty if ONLY the other cache is not empty and is protected. This does not w... Andreas Müller
10:43 AM bug #6449 (Resolved): Nomenclatural references with protected titleCache are not shown correctly in name editor
Applied in changeset commit:cdmlib|f0559e00a87ec517b860678d7209f72c20b45679. Andreas Müller
10:46 AM bug #6490 (New): Check code for using only single setTitleCache in Reference
This is copied from #6449. See description there.
Check cdmlib and taxeditor (can't set both categories here)
Andreas Müller
10:30 AM bug #6489 (Closed): Selection dialogs should not show the already selected elements for Synonym and TaxonNode operations
In selection dialogs the element which is already selected should not be presented in dialog. e.g. if an accepted tax... Katja Luther
10:24 AM bug #6424 (Feedback): Empty name creates problem/NPE in name editor
Generally it works now and ticket can be closed. Andreas Müller
10:24 AM bug #6424: Empty name creates problem/NPE in name editor
Could you still adapt the message that is shown if one tries to save a taxon with empty names "Es wurde versucht ein ... Andreas Müller
09:27 AM bug #6424 (Resolved): Empty name creates problem/NPE in name editor
Katja Luther
09:27 AM bug #6424 (Feedback): Empty name creates problem/NPE in name editor
sorry, now it works also with delete all empty names. Katja Luther
09:24 AM bug #6424 (Resolved): Empty name creates problem/NPE in name editor
Applied in changeset commit:taxeditor|898894c82879b1b37fe04b055cdc70bce67bb183. Katja Luther
01:08 AM bug #6424 (Feedback): Empty name creates problem/NPE in name editor
Sorry, I have to reopen.
When I tried to delete the name with "Delete all empty names" I still got an NPE, while d...
Andreas Müller
01:02 AM bug #6424 (Closed): Empty name creates problem/NPE in name editor
Seems to work correctly now. Andreas Müller
09:52 AM bug #5691 (Closed): Referencing objects view makes editor inresponsive if an object references many objects
Yes we close this ticket now, the View really works MUCH better now.
Anyway, could you still adapt the label provide...
Andreas Müller
09:18 AM bug #5691 (Resolved): Referencing objects view makes editor inresponsive if an object references many objects
with the last commits it should work now Katja Luther
09:28 AM bug #6440 (Closed): Improve IPNI Name Service
looks fine.
Katja Luther
02:12 AM task #1606 (Closed): Restrict filtered selection of in references to the respective reference types
Seems to work now Andreas Müller
02:02 AM bug #6262 (Feedback): Implement Rights reusable in TaxEditor
Seems to work (at least when removing unique key from MN tables).
Open issues:
* warning about multiple uses (...
Andreas Müller
01:59 AM feature request #6487 (New): Implement warning for multiple used records where ever needed
We have implemented warnings for references and maybe some others if they are used multiple times (and therefore edit... Andreas Müller
01:32 AM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor
Some Remaining issues:

* ~~The functionality is still missing for whole classifications~~
* ~~Dialog window has ...
Andreas Müller
01:12 AM bug #6322 (Closed): In the specimen editor showing the warning for long loading times already has a long loading time
Seems to be much faster now Andreas Müller
12:51 AM bug #6479 (Closed): Class Cast Exception when trying to delete a misapplication
OK, so I guess it is fixed and can be closed. Andreas Müller

03/09/2017

05:02 PM feature request #6486 (New): Implement handling of IntextReferences in dataportal
For information about IntextReferences see #4719.
References generally should link to the according object of type...
Andreas Müller
04:57 PM feature request #6485 (In Progress): Implement IntextReferences in TaxEditor
For information about IntextReferences see #4719
One solution could be the nebula rich text editor: http://www.ecl...
Andreas Müller
04:20 PM bug #6459 (Resolved): Implement deduplication for IntextReferences
Applied in changeset commit:cdmlib|3c6ba3cd2ac13cda7295367970a478290bbf52bf. Andreas Müller
04:01 PM bug #6484 (New): Include all paramaters of FindOccurrencesConfigurator in HQL query
Currently `AssignmentStatus` and `isRetrieveIndirectlyAssociatedSpecimens()` are not queried via HQL but in the servi... Patrick Plitzner
03:41 PM feature request #6483: Restructure "Show view" and bulk editor menu
Also we could move "Media" down in the menu as it is less important than specimen. Andreas Müller
03:39 PM feature request #6483 (Feedback): Restructure "Show view" and bulk editor menu
Looks good.
Can we still add separators in Admin menu to separate the user management menu items from others?
Als...
Andreas Müller
02:09 PM feature request #6483 (Resolved): Restructure "Show view" and bulk editor menu
Applied in changeset commit:taxeditor|5e008e493bbb4aeb2da462b3e5978dff82280f1e. Patrick Plitzner
02:09 PM feature request #6483 (Closed): Restructure "Show view" and bulk editor menu
Patrick Plitzner
03:07 PM bug #6408 (Closed): NPE in AbcdParseUtility
Katja Luther
03:05 PM bug #6424: Empty name creates problem/NPE in name editor
please review Katja Luther
03:03 PM bug #6424 (Resolved): Empty name creates problem/NPE in name editor
Applied in changeset commit:taxeditor|b8da2ad780bc334e229c35bdaefb3e687fc99889. Katja Luther
03:04 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
please review Katja Luther
02:51 PM bug #6322 (Resolved): In the specimen editor showing the warning for long loading times already has a long loading time
Applied in changeset commit:cdmlib|1c1517f9e08f7ec4d0ee6a75cf3e965f35ee185a. Patrick Plitzner
11:32 AM bug #6322: In the specimen editor showing the warning for long loading times already has a long loading time
It takes such a long time because for counting the same method is used as for retrieval Patrick Plitzner

03/08/2017

05:25 PM bug #6322: In the specimen editor showing the warning for long loading times already has a long loading time
This also happens in production. Searching takes at least >15sec Patrick Plitzner
05:20 PM bug #6199 (Resolved): Excluded note for excluded taxon nodes in TaxEdtior
Andreas Müller
05:11 PM bug #6381 (Closed): Specimen titleCache should include barcode or catalogue number if accession number not exists
works fine Patrick Plitzner
05:07 PM bug #6433 (Closed): NPE in PartialElement
works fine Patrick Plitzner
05:05 PM bug #6453 (Closed): Deleting text from min/max fields throws NPE
works fine Patrick Plitzner
05:03 PM bug #6466 (Resolved): IndexOutOfBoundsException when entering month
Applied in changeset commit:taxeditor|361f2123e6fd31a0747124531bd87c367a10ea26. Patrick Plitzner
04:53 PM feature request #5474: TermEditor menu should be more structured
How should the i18n for the terms work? Are there any translation csv files? The code already calls the correct metho... Patrick Plitzner
02:21 PM task #6258: Add Registration to cdm model
Andreas Kohlbecker wrote:
> A registration in progress can be dependant on another registration which needs to be co...
Andreas Müller
01:32 PM bug #6432 (Closed): Apply CSS only to non-admin pages
Andreas Kohlbecker

03/07/2017

06:05 PM task #6258: Add Registration to cdm model
We need to be able to associate Registrations with Users and CRUD of Registrations need to be controlled via GrantedA... Andreas Kohlbecker
02:45 PM task #6258: Add Registration to cdm model
A registration in progress can be dependant on another registration which needs to be completed before it is possible... Andreas Kohlbecker
04:22 PM bug #6432: Apply CSS only to non-admin pages
Ja, aber das Problem ist ja nicht direkt mit dem Theme, sondern wo benötigt das cdm_dataportal welche CSS regeln.
Zu...
Saskia Gennrich
03:59 PM bug #6432: Apply CSS only to non-admin pages
Hast du das auch mit dem 'garland_cichorieae'-Theme getestet? Andreas Kohlbecker
03:30 PM bug #6432 (Resolved): Apply CSS only to non-admin pages
Ich konnte das leider nicht reproduzieren.
Habe das CSS ein bisschen refactored. CSS für die Settings Tabelle wird a...
Saskia Gennrich
03:02 PM bug #5691 (Feedback): Referencing objects view makes editor inresponsive if an object references many objects
Andreas Müller
03:02 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Unfortunately it still exists. I opened my test database rem_conf_am on edit_test and opened taxon Abies testus notho... Andreas Müller
01:38 PM bug #5691 (Resolved): Referencing objects view makes editor inresponsive if an object references many objects
please check whether the exception occurs again. Katja Luther
02:56 PM task #1606 (Resolved): Restrict filtered selection of in references to the respective reference types
please review Katja Luther
01:37 PM bug #6479 (Resolved): Class Cast Exception when trying to delete a misapplication
This was fixed, see the associated revision.
Katja Luther
10:14 AM feature request #6482 (New): Simplify adding of repeating data like sources
WGB: beim Eingeben multipler Facts aus einer Quelle nervt das wiederholte Aufrufen der Referenz auf die Dauer (und vi... Andreas Müller
 

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