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From 01/28/2017 to 02/26/2017

02/26/2017

11:04 PM feature request #5554 (Resolved): Allow parsing of lat/long with different minute/second characters
Please review Andreas Müller
11:04 PM feature request #5554 (New): Allow parsing of lat/long with different minute/second characters
Andreas Müller
11:02 PM feature request #5554 (Resolved): Allow parsing of lat/long with different minute/second characters
Applied in changeset commit:cdmlib|8cfe0371df8e703dcdc3007579404891915e9d9c. Andreas Müller
10:14 PM bug #6099 (Resolved): Duration of save is increasing
Hi Norbert,
could you please check if this is fixed or at least better now. Probably it was fixed in version 4.4. ...
Andreas Müller
09:20 PM feature request #4137 (In Progress): Discuss "Material Sample" as new SpecimenOrObservationType
Andreas Müller
12:19 AM bug #6381 (Resolved): Specimen titleCache should include barcode or catalogue number if accession number not exists
Applied in changeset commit:cdmlib|132a52ccb75238b72dd8a321bc572ec9911c6944. Andreas Müller

02/24/2017

04:07 PM bug #6432: Apply CSS only to non-admin pages
I also pushed my branch https://dev.e-taxonomy.eu/gitweb/cdm-dataportal.git/shortlog/refs/heads/6432_css_only_admin Saskia Gennrich
03:54 PM bug #6432: Apply CSS only to non-admin pages
So here's a patchfile you can apply to your local repository with
git apply -v 6432_css_only_admin.patch
Saskia Gennrich
03:49 PM bug #6432 (Closed): Apply CSS only to non-admin pages
Some of the rules in cdm_dataportal.css are too wide. Especially HTML Description list tags (dl, dd, dt) mess with my... Saskia Gennrich
03:22 PM bug #6430 (Closed): proxy_content not returning data
Für nginx muss fastcgi_pass oder proxy_pass korrekt eingestellt werden, damit URLs direkt an php-fpm weitergeleitet w... Saskia Gennrich

02/22/2017

05:51 PM bug #6430 (Resolved): proxy_content not returning data
Es ist ein nginx Problem, weil der die url schon decoded bevor er sie an drupal weiter gibt. Saskia Gennrich
04:45 PM bug #6430: proxy_content not returning data
Nein, leider gibt es dazu noch keinen öffentlichen Server. Ich hab das sowohl auf meinem lokalen Rechner als auch auf... Saskia Gennrich
04:16 PM bug #6430 (Feedback): proxy_content not returning data
Auf dem test-portal verhalten sich die Breadcrumbs normal: http://test.e-taxonomy.eu/dataportal/preview/fauna-europae... Andreas Kohlbecker
04:02 PM bug #6430: proxy_content not returning data
Nach einem Update auf die aktuelle Version des Dataportals funktionieren die AJAX Anfragen in den Taxontree-Breadcrum... Saskia Gennrich
03:55 PM bug #6430 (Closed): proxy_content not returning data
Saskia Gennrich
04:19 PM bug #6431 (Closed): php INFO 'warnings' in fauna europeae taxon page
http://test.e-taxonomy.eu/dataportal/preview/fauna-europaea/cdm_dataportal/taxon/e5b22697-cf8f-49e8-aa90-82db69f4769d... Andreas Kohlbecker
10:52 AM feature request #6429 (Worksforme): Reconstruct Admin Preferences
At the moment the Admin preferences are in a tab view. They should be in a tree view like the local preferences. Katja Luther

02/21/2017

11:14 AM feature request #4137: Discuss "Material Sample" as new SpecimenOrObservationType
for algae and gbol II we need this to cover the environmental samples and mixed samples Katja Luther
10:41 AM feature request #6166: In ABCD import also import all siblings of a culture or tissue sample
Katja Luther wrote:
> actually we only get the associated units of an unit, but for a derivate of a culture or a tis...
Katja Luther
10:40 AM bug #5924 (Closed): Change password leads to bad credentials
Katja Luther
10:40 AM feature request #6076 (Resolved): Specimen biocase search should work on observations
Katja Luther

02/20/2017

06:20 PM task #3603 (Resolved): Remove creation of dummy DefinedTerm when creating new Term related entities
Applied in changeset commit:taxeditor|9dfd3706bcc09730a3b64d6b12a264b587c52a2e. Patrick Plitzner
05:38 PM task #3603 (In Progress): Remove creation of dummy DefinedTerm when creating new Term related entities
Reopened because although there are no errors dummy terms are still created Patrick Plitzner
05:36 PM task #3603 (Closed): Remove creation of dummy DefinedTerm when creating new Term related entities
I could not reproduce any error so I guess this is fixed. Patrick Plitzner

02/17/2017

08:26 PM bug #6100: Name parser problems
´t Hart still does not seem to work if compiled with maven. Should be avoided as it seems to be 2 characters (1 hidden) Andreas Müller
07:26 PM bug #6100 (In Progress): Name parser problems
Andreas Müller
07:26 PM bug #6100: Name parser problems
Issues from Name-parsing-problems.txt:
* most issues also about subgen., forma, C.I Peng, ´t Hart etc.
New iss...
Andreas Müller
06:35 PM bug #6100: Name parser problems
remaining issue from basionyms copied to new ticket: #6428 Andreas Müller
06:30 PM bug #6100: Name parser problems
Author issues (C.I, la Croix and ´t Hart) fixed with 78c828989914a .
Maybe we should automatically map ´t Hart to '...
Andreas Müller
06:00 PM bug #6100: Name parser problems
Andreas Müller wrote:
> Basionyms (cont.):
>
> Another problem is the use of forma instead of "f.". I haven't fou...
Wolf-Henning Kusber
05:58 PM bug #6100: Name parser problems
fixed subgen. and forma recognition by 7301dfbfa163b (even if maybe not code compliant) Andreas Müller
05:54 PM bug #6100: Name parser problems
't Hart is standard for ´t Hart
http://www.ipni.org/ipni/idAuthorSearch.do?id=10539-1&back_page=%2Fipni%2FeditAdvAut...
Wolf-Henning Kusber
05:45 PM bug #6100: Name parser problems
Basionyms (cont.):
Another problem is the use of forma instead of "f.". I haven't found in the code if abbreviatio...
Andreas Müller
05:23 PM bug #6100: Name parser problems
Basionyms (I):
Most cases refer to subgen. as infrageneric marker. According to Art. 5A.1. of the code subg. is th...
Andreas Müller
05:11 PM bug #6100: Name parser problems
Wolf-Henning Kusber wrote:
> Andreas Müller wrote:
> > Hybrids (2):
> >
> > * Swida x friedlanderi (W.H.Wagner ...
Wolf-Henning Kusber
04:49 PM bug #6100: Name parser problems
Andreas Müller wrote:
> Ex authors:
>
> * all the cases seem to follow the format Lycopersicon lycopersicoides A...
Wolf-Henning Kusber
04:48 PM bug #6100: Name parser problems
R.Br.ter => fixed with ce3ed240325c Andreas Müller
04:43 PM bug #6100: Name parser problems
Andreas Müller wrote:
> Hybrids (2):
>
> * Swida x friedlanderi (W.H.Wagner jun.) Holub => the problem here is...
Wolf-Henning Kusber
04:41 PM bug #6100: Name parser problems
Ex authors:
* all the cases seem to follow the format Lycopersicon lycopersicoides A.Child ex (Dunal) J.M.H.Shaw ...
Andreas Müller
04:37 PM bug #6100: Name parser problems
Hybrids (2):
* Swida x friedlanderi (W.H.Wagner jun.) Holub => the problem here is "jun." in the author
fix...
Andreas Müller
04:34 PM bug #6100: Name parser problems
Andreas Müller wrote:
> Hybrids:
> * Pterocypsela x mansuensis (Hayata) C.I Peng => the problem here is the missi...
Wolf-Henning Kusber
04:26 PM bug #6100: Name parser problems
Hybrids:
* Pterocypsela x mansuensis (Hayata) C.I Peng => the problem here is the missing dot after "C.I" ! Is t...
Andreas Müller
08:11 PM task #6158 (Resolved): Update EDIT documentation from svn to git
Andreas Müller
06:33 PM feature request #6428 (New): Handle fungi authors in name parser (and model)
see https://dev.e-taxonomy.eu/redmine/issues/6100?#note-13 for examples Andreas Müller
04:12 PM feature request #5983 (Resolved): Better parsing of hybrid names
Please review if all relevant cases are covered by the new parser. Andreas Müller
11:19 AM feature request #5983 (In Progress): Better parsing of hybrid names
Andreas Müller
12:51 PM feature request #6315 (Resolved): Implement setSecundumForSubtree in TaxEditor
Applied in changeset commit:taxeditor|d898479a7e96e9b83ca7042327ab076846fe143c. Katja Luther
10:57 AM bug #6262 (Resolved): Implement Rights reusable in TaxEditor
Applied in changeset commit:taxeditor|8dbcbc43e5cc155eea9d70af88fc937325fb1927. Katja Luther
10:45 AM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
moved the setting of the description to its own thread to avoid the "Invalid thread access" exception. And clear righ... Katja Luther
10:16 AM bug #6427 (New): Improve Matching for Reference.title and abbrevTitle
Currently we have EQUAL_REQUIRED on title which is to strict as also an abbrevTitle is sufficient.
We need a rule ...
Andreas Müller
12:20 AM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
Andreas Müller wrote:
> A last issue: if possible it would be more intuitive if the label textfields could be placed...
Andreas Müller
12:09 AM feature request #5474 (Feedback): TermEditor menu should be more structured
Separator works now.
i18n for "others" still does not work.
Andreas Müller
12:02 AM feature request #5671 (Feedback): Name selection should not allow self referencing name relationships
Andreas Müller
12:01 AM feature request #5671: Name selection should not allow self referencing name relationships
Seems to be solved for name relationships but still open for taxon relationships.
Also for inreferences we need to...
Andreas Müller

02/16/2017

11:59 PM bug #6426 (New): Avoid stack overflow in self referencing references
happens in cache strategy:
~~~
login : admin
editor version : 4.6.0.201702161652
server : test.e-taxonomy.eu (e...
Andreas Müller
11:44 PM feature request #5714 (Closed): In Original Source Type dropdown show Primary Taxonomic Source first
Seems to be correct now Andreas Müller
11:39 PM bug #5924: Change password leads to bad credentials
Seems to work Andreas Müller
11:31 PM task #1606 (Feedback): Restrict filtered selection of in references to the respective reference types
Andreas Müller
11:26 PM task #1606: Restrict filtered selection of in references to the respective reference types
When trying to select a reference for an article with "?" I got the following exception:
~~~
login : admin
edito...
Andreas Müller
11:04 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
The above exceptions appears often though not 100% reproducable.
Also when a new object is selected the dialog do...
Andreas Müller
10:58 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
when canceling the job it looks like it sometimes still shows the old records (for an old selection) this may be misl... Andreas Müller
10:48 PM bug #5691 (Feedback): Referencing objects view makes editor inresponsive if an object references many objects
I got an "Invalid thread access" exception when testing it for reference "The International Plant Names Index (2012).... Andreas Müller
10:41 PM feature request #922 (Closed): Implement compareTo method in IdentifiableEntity properly
Moved the tests down to the subclasses Andreas Müller
09:33 PM bug #6304 (Closed): Deleting of Person used as user does not work
Andreas Müller
09:27 PM feature request #6308 (Feedback): Add configuration dialog for the deletion of synonyms in name editor
Andreas Müller
09:26 PM feature request #6308: Add configuration dialog for the deletion of synonyms in name editor
Generally works, but if name could not be deleted (because in use) 2 warning appear, first is about synonym delete, s... Andreas Müller
09:09 PM bug #6425 (New): Problems with synonyms in taxon navigator comparator
When having natural ordering switched on and navigator synonyms (experimentell feature in Customize View -> Content) ... Andreas Müller
09:01 PM bug #6424 (Closed): Empty name creates problem/NPE in name editor
When pressing return on the end of the synonymy list a new empty record appears. When trying to save it is labeled "C... Andreas Müller
08:55 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
Generally the functionality seems to work well. Andreas Müller
08:54 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
The progressbar does not seem to work. Is this because it is not yet correctly implemented in the underlying cdmlib m... Andreas Müller
08:53 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
Trying to create a new Reference in the reference selection box throws an NPE when clicking on ok:
~~~
login : ad...
Andreas Müller
08:52 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
* If neither accepted taxa nor synonyms are checkedthe OK button should be disabled
* "mehrfach verwendete" taxa s...
Andreas Müller
08:35 PM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor
Some layout and labeling issues:
* The New secundum reference label is not translated
* "anwenden auf akzeptier...
Andreas Müller
08:18 PM bug #6376 (Closed): NPE when deduplicating agent
Difficult to test as there is no description how to reproduce. Anyway I tested some deduplications and it works. Also... Andreas Müller
08:31 AM bug #6262: Implement Rights reusable in TaxEditor
Andreas Müller wrote:
> Katja Luther wrote:
> > for reusability of rights we need a service to get the text and the...
Katja Luther

02/15/2017

05:26 PM bug #5639: NPE when showing name relationships for a name originally related to a deleted name
Katja Luther wrote:
> I could reproduce it with following settings:
>
> name1 has nameRelation to name2 and name2...
Andreas Müller
02:10 PM bug #5639: NPE when showing name relationships for a name originally related to a deleted name
I could reproduce it with following settings:
name1 has nameRelation to name2 and name2 has another nameRelation t...
Katja Luther
05:13 PM bug #6262: Implement Rights reusable in TaxEditor
Katja Luther wrote:
> for reusability of rights we need a service to get the text and the uuid of the rights, maybe ...
Andreas Müller
03:16 PM bug #6262 (In Progress): Implement Rights reusable in TaxEditor
for reusability of rights we need a service to get the text and the uuid of the rights, maybe it would be nice to hav... Katja Luther
02:10 PM feature request #5839 (Duplicate): Improve error message when server can't be reached
Katja Luther
01:19 PM bug #6423 (New): searching for synonyms and taxa in advanced search does not return all synonyms
Hallo,
mir scheint, die advanced name search sammelt Synonyme, wenn die entsprechende Option angehakt ist, nur seh...
Katja Luther
09:59 AM task #6421: Document workaround for user.home location problem in Windows
Andreas Kohlbecker wrote:
> Hi Patrick, would you volunteer to care for this?
Yes. I still have an open documenta...
Patrick Plitzner
09:16 AM task #6421: Document workaround for user.home location problem in Windows
Hi Patrick, would you volunteer to care for this? Andreas Kohlbecker
09:05 AM task #6421 (Closed): Document workaround for user.home location problem in Windows
see #5848#note-9 for details Andreas Kohlbecker
09:14 AM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
Thank you Ben for this analysis.
I fully agree, we cant do much about this exept providing good documentation for ...
Andreas Kohlbecker
09:13 AM bug #6422 (New): 'Specified key was too long' on creating a new database
issue copied from #5848
Originally reported by Ben Stöver. Had problems when creating a new database from within t...
Andreas Kohlbecker

02/14/2017

01:58 PM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
I tested it again and it now uses "C:\Users\bstoe_01" as the user profile path. This is a local copy of the profile w... Ben Stöver
12:56 PM feature request #5848 (Feedback): Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
This issue seems to be related to a java bug which existed in java versions pre jdk 1.8: https://duckduckgo.com/?q=Sy... Andreas Kohlbecker
12:29 PM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
Patrick merged the current code into my branch and I tested it. I currently always run the EDITor with the option "-D... Ben Stöver
10:44 AM bug #6418 (In Progress): Status line does not update after completing the update of the referencing objects view
the message which keeps staying in the status line is the title of one of the first jobs. The job is finsihed and the... Katja Luther
08:17 AM bug #6418 (Worksforme): Status line does not update after completing the update of the referencing objects view
After finishing the update of the referencing objects view the status line still shows "Updating referencing objects ... Katja Luther
10:01 AM task #6419 (Closed): CdmApplicationDefaultConfiguration should be named CdmRepository
Andreas Kohlbecker
10:01 AM task #6419 (Resolved): CdmApplicationDefaultConfiguration should be named CdmRepository
Applied in changeset commit:cdmlib|be652f06b6a64c10433a94b46f88c6458145395f. Andreas Kohlbecker
08:59 AM task #6419 (In Progress): CdmApplicationDefaultConfiguration should be named CdmRepository
Andreas Kohlbecker
08:47 AM task #6419 (Closed): CdmApplicationDefaultConfiguration should be named CdmRepository
Andreas Kohlbecker
08:49 AM task #6420 (New): Autowire CdmApplicationDefaultConfiguration instead of subclasses of ICdmServ ice
All classes autowiring any service class should rather be autowiring CdmApplicationDefaultConfiguration wheras the in... Andreas Kohlbecker
08:15 AM bug #5691 (Resolved): Referencing objects view makes editor inresponsive if an object references many objects
The problem of unresponsible editor is solved but the status line keeps the message "Updating referencing objects vie... Katja Luther

02/13/2017

11:05 PM task #6417 (New): [DISCUSS] Need and properties of a NomenclaturalReference class
Pure nomenclatural references do have some specific properties only they have.
* very often articles and book sec...
Andreas Müller
03:52 PM feature request #6315 (Resolved): Implement setSecundumForSubtree in TaxEditor
implemented the menu item for the navigator. At the moment it is possible to remove the sec reference of the subtree ... Katja Luther
01:10 PM feature request #6416 (New): Change sortindex of keynodes
Sometimes it is needed that the alternatives of a polytomous key node are sorted in a different way. We need an opera... Katja Luther
12:04 PM bug #2495: IpniServiceTest fails from time to time
I applied this fix because I was blocked by the IPNI Service not being available for quite some time. The cdmlib coul... Andreas Kohlbecker
10:26 AM bug #2495: IpniServiceTest fails from time to time
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Andreas Kohlbecker wrote:
> This is a good suggestion. Howev...
Andreas Müller
10:24 AM bug #2495 (Feedback): IpniServiceTest fails from time to time
Andreas Müller
08:21 AM bug #2495 (Closed): IpniServiceTest fails from time to time
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > fixed by commit:9a211f9
> >
> > this is actually very quic...
Andreas Kohlbecker
10:29 AM bug #6415 (New): Create test suite for availability testing of external services
Availability of external services needs to be tested outside cdmlib standard maven testing to avoid failing tests in ... Andreas Müller

02/10/2017

09:34 PM bug #2495 (Feedback): IpniServiceTest fails from time to time
Andreas Kohlbecker wrote:
> fixed by commit:9a211f9
>
> this is actually very quick and easy to achieve:
>
> T...
Andreas Müller
05:27 PM bug #2495 (Closed): IpniServiceTest fails from time to time
fixed by commit:9a211f9
this is actually very quick and easy to achieve:
~~~java
@Before
public void setUp(...
Andreas Kohlbecker
02:03 PM bug #6414 (New): use short name for excluded, unplaced taxa when the genus of the parent taxa is different
This is handled in `cdm_dataportal.module#cdm_dataportal_shortname_of()`
However, we should consider solving this ...
Andreas Kohlbecker

02/09/2017

12:30 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
My preferred solution: an option (with similar functionality as the "add new specimen" option for a field unit in the... Norbert Kilian
11:45 AM bug #6299: Error when deleting reference in bulk editor
Patrick Plitzner wrote:
> I don't know how to reproduce this. Does this also happen in local workspace environment?
...
Katja Luther
11:39 AM bug #6299 (Feedback): Error when deleting reference in bulk editor
I don't know how to reproduce this. Does this also happen in local workspace environment? Patrick Plitzner

02/08/2017

08:09 PM feature request #5474 (Resolved): TermEditor menu should be more structured
Andreas Müller
05:25 PM feature request #5474: TermEditor menu should be more structured
Added a separator. Implemented use of i10n but could not check if it works Patrick Plitzner
05:12 PM feature request #6413 (Closed): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
Coming from the name editor it is currently only possible to add a new type designation in order to create a type spe... Patrick Plitzner
03:31 PM bug #6281 (In Progress): delete synonym with annotations throws exception
reverted the orphan-delete removal and try to reproduce when the problem appears. In a cdmlib test everything works f... Katja Luther
11:22 AM bug #6281: delete synonym with annotations throws exception
after some more research it seems to be a problem of orphanRemoval=true.
I removed the orphan-removal annotation ...
Katja Luther
11:15 AM bug #6281 (Resolved): delete synonym with annotations throws exception
Applied in changeset commit:cdmlib|20cfb7a6d5e466a0d9444be958537e3db2a8732d. Katja Luther
02:13 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
Fixed order of "Other" and "Unknown" Patrick Plitzner
12:04 PM bug #6412 (New): Improve display of gathering event in specimen default view
There are multiple issues:
* If no collecting areas exist the label is still shown together with the following att...
Andreas Müller
11:12 AM feature request #6308 (Resolved): Add configuration dialog for the deletion of synonyms in name editor
Applied in changeset commit:taxeditor|2bffeed29e530122d2885344f716cda61a9cc825. Katja Luther
08:49 AM task #5285 (In Progress): Use Vaadin Spring Add-on
Andreas Kohlbecker

02/07/2017

05:22 PM bug #6388 (Closed): Duplicate entry exception when adding types to a taxon
works fine Patrick Plitzner
05:19 PM bug #6300 (Closed): DataIntegrityViolationException when saving a type
creating a new type specimen with only a protected title cache and saving it works fine Patrick Plitzner
05:16 PM bug #6336 (Closed): NPE when deleting recently created media
works fine Patrick Plitzner
05:12 PM bug #6372 (Closed): NPE when using ShowView - Datasource
Works fine!
Tested it with a corrupted datasources file
Patrick Plitzner
04:21 PM bug #2939 (Closed): ehcache diskStore conflict?
Andreas Kohlbecker
11:48 AM bug #6311 (Rejected): Refactor IdentifiableEntity.compareTo method
Close the ticket as we moved the methods to TaxonNameBase and TaxonBase and the compareToX methods do not implement t... Katja Luther
11:30 AM feature request #922 (Feedback): Implement compareTo method in IdentifiableEntity properly
Looks fine, the only thing that should be moved, are the tests for the new methods. At the moment the methods are sti... Katja Luther
08:45 AM bug #6411 (Rejected): instructions on installing the nebula widget as missing
Yes this is solved. Andreas Kohlbecker

02/06/2017

06:36 PM bug #6411: instructions on installing the nebula widget as missing
This is solved by setting the target platform, right? Should we close this as invalid? Patrick Plitzner
03:12 PM bug #6411 (Rejected): instructions on installing the nebula widget as missing
Instructions on installing the nebula widget is missing in the taxeditor site documentation
1. go to help->
1. ad...
Andreas Kohlbecker
04:58 PM task #6401 (Closed): Update working environment to jdk 1.8
Andreas Müller

02/03/2017

01:27 PM bug #6409 (Closed): Fix failing Level3 validation in ValidationTest introduced by removing TaxonNameBase subclasses
method is testLevel3ValidationWithValidName was set to @Ignore
The problem occurs in org.hibernate.validator.inter...
Andreas Müller
12:36 PM feature request #3580 (Duplicate): Write permission error with temporary cdmserver echache dir
Andreas Kohlbecker
12:33 PM bug #1753 (Worksforme): error in server due to level2 cache
this is no longer a problem Andreas Kohlbecker
12:29 PM feature request #5848 (Resolved): Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
This issue most probably has been fixed while solving #2939
@Patrick: please review
Andreas Kohlbecker
12:22 PM bug #2939 (Resolved): ehcache diskStore conflict?
Applied in changeset commit:cdmlib|1fd4a547b99301f06524ab828dc5eb4ef8af3c10. Andreas Kohlbecker
10:53 AM bug #6408 (Resolved): NPE in AbcdParseUtility
Applied in changeset commit:cdmlib|5adaf48060a375396e01bbc9eaea06c114b0403a. Patrick Plitzner
10:52 AM bug #6408 (Closed): NPE in AbcdParseUtility
~~~
login : admin
editor version : 4.5.1
server : 160.45.63.230 (edit-WS I) / caryophyllales_demo_01
schema...
Patrick Plitzner

02/02/2017

11:04 PM bug #6404: StackOverflow when compiling large java classes in Java8 (jdk1.8)
@PP: if you still if the old version of the compilerArgs, could you please add them to the ticket? Andreas Müller
10:59 PM bug #6404 (Rejected): StackOverflow when compiling large java classes in Java8 (jdk1.8)
We decided to NOT use the compilerArgs but rather try to fix the large class issue #6406.
Also the above compilerA...
Andreas Müller
01:09 PM bug #6404 (Closed): StackOverflow when compiling large java classes in Java8 (jdk1.8)
Andreas M.: Can you link the ticket for the MarkupTransformer class to this ticket? Patrick Plitzner
01:06 PM bug #6404 (Rejected): StackOverflow when compiling large java classes in Java8 (jdk1.8)
After updating to Java 8 compiling via `mvn clean install` results in a StackOverflow. (compiling in Eclipse works be... Patrick Plitzner
11:03 PM bug #6407: Upgrade maven compiler plugin to latest version
Maybe a related commit:1ddde622ae10b01976cdb99fb50a469a5506ca7e Andreas Müller
10:58 PM bug #6407 (New): Upgrade maven compiler plugin to latest version
Currently this is not yet possible as it results in test errors probably related to missing aspectj support. This pro... Andreas Müller
05:16 PM bug #6405 (Closed): CdmPermissionVoter handles merged and separate CdmAuthorities the same
Andreas Kohlbecker
05:16 PM bug #6405: CdmPermissionVoter handles merged and separate CdmAuthorities the same
reverting commit:cdmlib|5cb08c3f by commit:cdmlib|bb902a4 Andreas Kohlbecker
04:55 PM bug #6405 (Resolved): CdmPermissionVoter handles merged and separate CdmAuthorities the same
Applied in changeset commit:cdmlib|3e29fc14020cbf9604f9ec4a8ae87fcadbbb3d3f. Andreas Kohlbecker
02:56 PM bug #6405 (Closed): CdmPermissionVoter handles merged and separate CdmAuthorities the same
The CdmPermissionVoter must take all CdmAuthorities into account which only differ by the property if any is defined ... Andreas Kohlbecker
04:56 PM task #6401 (Resolved): Update working environment to jdk 1.8
We still need to check for any dependencies that can be updated now. Or we leave this to the next general dependency ... Andreas Müller
04:54 PM task #6401: Update working environment to jdk 1.8
Some generics in model needed to be updated (no ticket for this). This also lead to a refactoring for DefinedTermBase... Andreas Müller
04:51 PM bug #6406 (In Progress): Refactor MarkupTransformer class which is too large
Andreas Müller
04:50 PM bug #6406 (In Progress): Refactor MarkupTransformer class which is too large
The large class creates problems when upgrading to java 1.8 (see #6401 and #6404).
As a work around we now comment...
Andreas Müller
04:30 PM bug #6311 (In Progress): Refactor IdentifiableEntity.compareTo method
The 2 fixes dfc40f67 and 44e2abe8 primarily fixed #922 and not THIS ticket.
However, during this process we realiz...
Andreas Müller
03:00 PM bug #6311 (Resolved): Refactor IdentifiableEntity.compareTo method
Applied in changeset commit:cdmlib|dfc40f673035647ff6af03097229edd1e7712222. Andreas Müller
01:27 PM bug #6311 (In Progress): Refactor IdentifiableEntity.compareTo method
Andreas Müller
04:21 PM feature request #922 (Resolved): Implement compareTo method in IdentifiableEntity properly
Revision showed that

* the method was never used by different classes and therefore the parameter does not need t...
Andreas Müller
02:10 PM bug #6304 (Resolved): Deleting of Person used as user does not work
Applied in changeset commit:taxeditor|d1428f78d00bd439e471e03c5a13a68763818c29. Katja Luther
01:56 PM bug #6309: Creating an existing user throws exception
added a check for existence of users with the same username before saving the new user Katja Luther
01:54 PM bug #6309 (Resolved): Creating an existing user throws exception
Applied in changeset commit:taxeditor|afc2457c7a4661cd1577fd486211da032354a61c. Katja Luther
01:37 PM bug #6388 (Resolved): Duplicate entry exception when adding types to a taxon
should be solved with fixing #6300. Could not reproduce it anymore. Katja Luther
01:07 PM bug #6300: DataIntegrityViolationException when saving a type
Applied in changeset commit:taxeditor|e904eb89dc409f901b858e5936cbc08eef82f7fc. Katja Luther
01:06 PM bug #6300 (Resolved): DataIntegrityViolationException when saving a type
I removed the bindNullSession call and now it works. Please have a look, if everything else works, too. (I tested cre... Katja Luther
10:52 AM bug #5216: Changing the CRUD flags of an existing GrantedAuthority in the CdmAuthorityEditorInput causes an MySQLIntegrityConstraintViolationException
added a check for existence of all authority strings and replace the already existing ones with the ones already in d... Katja Luther
10:04 AM bug #5216 (Resolved): Changing the CRUD flags of an existing GrantedAuthority in the CdmAuthorityEditorInput causes an MySQLIntegrityConstraintViolationException
Applied in changeset commit:taxeditor|a789364c344b94462f1e277ee1855eea2615e59b. Katja Luther
08:41 AM bug #6403 (New): palmweb: Show image thumbnail tickbox no longer working
This could be due to divergence of the palmweb special code with the dataportal core code.
The purpose of the specia...
Andreas Kohlbecker
08:35 AM bug #6402 (New): palmweb: remove comment module related code and disable comments
Andreas Kohlbecker
07:51 AM task #6392 (Closed): selenium tests for palmweb uses data
Andreas Kohlbecker

02/01/2017

08:44 PM task #1606: Restrict filtered selection of in references to the respective reference types
Katja Luther wrote:
> Applied in changeset commit:cdmlib|a80bb20e9da22230326d65598b4cf07ff1a5dff5.
There was a ...
Andreas Müller
11:44 AM task #1606: Restrict filtered selection of in references to the respective reference types
implemented for:
Article -> journal
InProceedings -> proceedings
Booksection -> book
book -> printSeries
proce...
Katja Luther
11:40 AM task #1606 (Resolved): Restrict filtered selection of in references to the respective reference types
Applied in changeset commit:cdmlib|a80bb20e9da22230326d65598b4cf07ff1a5dff5. Katja Luther
02:15 PM bug #3737: Protected caches for taxa and names behave inconsistent
please review Katja Luther
02:14 PM bug #3737 (Resolved): Protected caches for taxa and names behave inconsistent
Applied in changeset commit:taxeditor|a452be91ae106b545b4393798e666aef347a0ef1. Katja Luther
01:54 PM task #6392 (Resolved): selenium tests for palmweb uses data
Applied in changeset commit:cdm-dataportal|1b756c5f0a44f01502a0f88ff155e124e93860c8. Andreas Kohlbecker
09:28 AM task #6392 (In Progress): selenium tests for palmweb uses data
Andreas Kohlbecker
11:49 AM task #6401 (Closed): Update working environment to jdk 1.8
Patrick Plitzner

01/31/2017

02:49 PM bug #6138 (In Progress): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
in eclipse the test is successfull, but with maven it fails... Katja Luther
12:56 PM bug #6138 (Resolved): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
Katja Luther
12:55 PM bug #6138: fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
the test does not fail anymore. Katja Luther
02:16 PM bug #6374 (Closed): Uses no longer shown in palmweb portal broken
Andreas Kohlbecker
02:02 PM bug #6374 (Resolved): Uses no longer shown in palmweb portal broken
Applied in changeset commit:cdm-dataportal|4feafea8403142f30c31c0a612b0b2a2de1f76bf. Andreas Kohlbecker
12:45 PM bug #4390: Titlecache of field unit does not update when changing field unit data via derived unit facade
please review Katja Luther
12:44 PM bug #4390 (Resolved): Titlecache of field unit does not update when changing field unit data via derived unit facade
Applied in changeset commit:cdmlib|5d6b7e01b19c421947455d7a74bd97a907de60aa. Katja Luther
12:10 PM bug #5924 (Resolved): Change password leads to bad credentials
Applied in changeset commit:taxeditor|1c082d5b9b3063e5be95e2520fdb6c4a62da2388. Katja Luther
11:49 AM feature request #6076: Specimen biocase search should work on observations
the search works on all record basis now.
we need to check whether the model covers all types.
Katja Luther
11:37 AM bug #6336 (Resolved): NPE when deleting recently created media
this is already fixed. see associated revision. Katja Luther

01/30/2017

05:52 PM bug #6400 (New): Palmweb feature 'Number of Taxa' no longer working
reported in 'RE: A few problems with EDIT Platform 3.3.3' by Lauren Gardiner (28.04.2014 15:19) :
----
'Number ...
Andreas Kohlbecker
04:50 PM bug #6374: Uses no longer shown in palmweb portal broken
was still broken due to #6398 Andreas Kohlbecker
04:47 PM bug #6398 (Closed): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
Andreas Kohlbecker
03:33 PM bug #6398 (Resolved): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
Applied in changeset commit:cdmlib|f540b1391e26e2dd6733d19bff2bfb2cfa3c40fa. Andreas Kohlbecker
01:43 PM bug #6398 (Closed): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
The portal web service `portal/taxon/{uuid}/descriptions.json` with `markerType` filter returns no data.
In contrast...
Andreas Kohlbecker
03:53 PM feature request #6367 (In Progress): Make NomenclaturalCode an attribute ("type") of TaxonNameBase
Andreas Müller
03:27 PM bug #6322: In the specimen editor showing the warning for long loading times already has a long loading time
Check first on production. Andreas Müller
02:59 PM bug #6347: Improve layout for navigator sorttype selection
.. or use dropdown Andreas Müller
02:53 PM bug #6372 (Resolved): NPE when using ShowView - Datasource
Applied in changeset commit:taxeditor|a286b342b8d1606be85d96505eb507fe93abe97b. Andreas Müller
02:37 PM bug #6389: Returning a Map in cdmlib leads to data loss
Check if this method is used elsewhere. If not make it deprecated with reason that it currently gives not the expecte... Andreas Müller
01:52 PM feature request #6399 (Closed): Add admin property frequently used biocase provider
For a better handling in biocase import we need an admin property which contains the main biocase provider of the pro... Katja Luther
12:09 PM bug #6397 (Closed): palmweb: various feature blocks missing
Andreas Kohlbecker
12:03 PM bug #6397 (Resolved): palmweb: various feature blocks missing
Applied in changeset commit:cdm-dataportal|caab0bd280def9962d6c979e41719ce462c35163. Andreas Kohlbecker
11:33 AM bug #6397: palmweb: various feature blocks missing
This is a bug which has been introduced while solving #6114 and #4379 commit. Andreas Kohlbecker
10:46 AM bug #6397 (Closed): palmweb: various feature blocks missing
In the palmweb portal various feature blocks are missing.
At the example of *Calamus aruensis*:
This taxon has ...
Andreas Kohlbecker
10:52 AM task #6360: Move NonViralName functionality to TaxonNameBase
Applied in changeset commit:cdmlib|df5738fefc6971d38b6cb364accd0b38af6a69d8. Andreas Müller
10:45 AM task #6364 (Resolved): Merge viral names and bacterial names into TaxonNameBase
Applied in changeset commit:cdmlib|6369aae2b548ac9f046ff2a8e755326226ec7904. Andreas Müller
10:41 AM task #6366 (Resolved): Merge cultivar names into TaxonNameBase
Applied in changeset commit:cdmlib|174ae83b06b5d01305560d46a3391c520d471354. Andreas Müller

01/28/2017

12:55 AM task #6366 (In Progress): Merge cultivar names into TaxonNameBase
Andreas Müller
 

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