Activity
From 01/27/2017 to 02/25/2017
02/24/2017
- 04:07 PM bug #6432: Apply CSS only to non-admin pages
- I also pushed my branch https://dev.e-taxonomy.eu/gitweb/cdm-dataportal.git/shortlog/refs/heads/6432_css_only_admin
- 03:54 PM bug #6432: Apply CSS only to non-admin pages
- So here's a patchfile you can apply to your local repository with
git apply -v 6432_css_only_admin.patch - 03:49 PM bug #6432 (Closed): Apply CSS only to non-admin pages
- Some of the rules in cdm_dataportal.css are too wide. Especially HTML Description list tags (dl, dd, dt) mess with my...
- 03:50 PM Revision 42316889 (cdm-dataportal): ref #6432 apply css only to non-admin pages
- 03:22 PM bug #6430 (Closed): proxy_content not returning data
- Für nginx muss fastcgi_pass oder proxy_pass korrekt eingestellt werden, damit URLs direkt an php-fpm weitergeleitet w...
- 09:27 AM Revision 22b10d0b (taxeditor): ref #4611 Remove unused string constant
02/23/2017
- 04:49 PM Revision a86dbf9a (taxeditor): ref #4611 Restructure string externalization for taxeditor.store
- - created l10n package and moved Messages.java and the
messages.properties files there - 04:47 PM Revision 81202bbf (taxeditor): ref #4611 Fix l10n property path
- 04:45 PM Revision 6a5433c1 (taxeditor): ref #4611 Restructure string externalization for taxeditor.navigation
- - created l10n package and moved Messages.java and the
messages.properties files there - 04:42 PM Revision 3feda385 (taxeditor): ref #4611 Include properties files in binary build
- 04:42 PM Revision 313644ae (taxeditor): ref #4611 Restructure string externalization for taxeditor.molecular
- - created l10n package and moved Messages.java and the
messages.properties files there - 04:30 PM Revision 3e3975f3 (taxeditor): ref #4611 Restructure string externalization for taxeditor.bulkeditor
- - created l10n package and moved Messages.java and the
messages.properties files there - 02:41 PM Revision 150b624d (taxeditor): ref #4611 complete i18n for taxeditor.editor plugin
- - also created l10n package and moved Messages.java and teh
messages.properties files there - 02:41 PM Revision 61c51c84 (taxeditor): ref #4611 i18n for taxeditor.editor plugin
- 12:04 PM Revision 2a41b80d (taxeditor): externalize strings for admin menu
- 10:48 AM Revision 8c44775b (cdmlib): provide the new IRightsService in service layer
- 10:33 AM Revision a3140560 (taxeditor): add RightsService to CdmApplicationRemoteConfiguration
- 10:33 AM Revision cf802bbf (taxeditor): fix excdel import from editor
- 10:24 AM Revision 37180104 (cdmlib): fix excel import from editor
02/22/2017
- 05:51 PM bug #6430 (Resolved): proxy_content not returning data
- Es ist ein nginx Problem, weil der die url schon decoded bevor er sie an drupal weiter gibt.
- 04:45 PM bug #6430: proxy_content not returning data
- Nein, leider gibt es dazu noch keinen öffentlichen Server. Ich hab das sowohl auf meinem lokalen Rechner als auch auf...
- 04:16 PM bug #6430 (Feedback): proxy_content not returning data
- Auf dem test-portal verhalten sich die Breadcrumbs normal: http://test.e-taxonomy.eu/dataportal/preview/fauna-europae...
- 04:02 PM bug #6430: proxy_content not returning data
- Nach einem Update auf die aktuelle Version des Dataportals funktionieren die AJAX Anfragen in den Taxontree-Breadcrum...
- 03:55 PM bug #6430 (Closed): proxy_content not returning data
- 04:19 PM bug #6431 (Closed): php INFO 'warnings' in fauna europeae taxon page
- http://test.e-taxonomy.eu/dataportal/preview/fauna-europaea/cdm_dataportal/taxon/e5b22697-cf8f-49e8-aa90-82db69f4769d...
- 12:52 PM Revision 3111b076 (taxeditor): ref #4611 i18n for molecular plugin (missing translation)
- 12:50 PM Revision c4a7540a (taxeditor): ref #4611 i18n for molecular plugin
- 12:50 PM Revision ae0a9e7c (taxeditor): ref #6421 Add workaround to troubleshooting
- 10:52 AM feature request #6429 (Worksforme): Reconstruct Admin Preferences
- At the moment the Admin preferences are in a tab view. They should be in a tree view like the local preferences.
02/21/2017
- 04:48 PM Revision 8d33d5d6 (taxeditor): ref #4611 Add missing string, remove unused files
- 04:44 PM Revision ae137b34 (taxeditor): ref #4611 some l10n for taxeditor and taxeditor.editor plugin
- 12:25 PM Revision f1e283f5 (cdm-vaadin): renaming dbstatus to DistributionStatus
- 11:14 AM feature request #4137: Discuss "Material Sample" as new SpecimenOrObservationType
- for algae and gbol II we need this to cover the environmental samples and mixed samples
- 10:41 AM feature request #6166: In ABCD import also import all siblings of a culture or tissue sample
- Katja Luther wrote:
> actually we only get the associated units of an unit, but for a derivate of a culture or a tis... - 10:40 AM bug #5924 (Closed): Change password leads to bad credentials
- 10:40 AM feature request #6076 (Resolved): Specimen biocase search should work on observations
02/20/2017
- 06:20 PM task #3603 (Resolved): Remove creation of dummy DefinedTerm when creating new Term related entities
- Applied in changeset commit:taxeditor|9dfd3706bcc09730a3b64d6b12a264b587c52a2e.
- 05:38 PM task #3603 (In Progress): Remove creation of dummy DefinedTerm when creating new Term related entities
- Reopened because although there are no errors dummy terms are still created
- 05:36 PM task #3603 (Closed): Remove creation of dummy DefinedTerm when creating new Term related entities
- I could not reproduce any error so I guess this is fixed.
- 06:20 PM Revision 9dfd3706 (taxeditor): fix #3603 Avoid creation of dummy DefinedTerm
02/17/2017
- 08:26 PM bug #6100: Name parser problems
- ´t Hart still does not seem to work if compiled with maven. Should be avoided as it seems to be 2 characters (1 hidden)
- 07:26 PM bug #6100 (In Progress): Name parser problems
- 07:26 PM bug #6100: Name parser problems
- Issues from Name-parsing-problems.txt:
* most issues also about subgen., forma, C.I Peng, ´t Hart etc.
New iss... - 06:35 PM bug #6100: Name parser problems
- remaining issue from basionyms copied to new ticket: #6428
- 06:30 PM bug #6100: Name parser problems
- Author issues (C.I, la Croix and ´t Hart) fixed with 78c828989914a .
Maybe we should automatically map ´t Hart to '... - 06:00 PM bug #6100: Name parser problems
- Andreas Müller wrote:
> Basionyms (cont.):
>
> Another problem is the use of forma instead of "f.". I haven't fou... - 05:58 PM bug #6100: Name parser problems
- fixed subgen. and forma recognition by 7301dfbfa163b (even if maybe not code compliant)
- 05:54 PM bug #6100: Name parser problems
- 't Hart is standard for ´t Hart
http://www.ipni.org/ipni/idAuthorSearch.do?id=10539-1&back_page=%2Fipni%2FeditAdvAut... - 05:45 PM bug #6100: Name parser problems
- Basionyms (cont.):
Another problem is the use of forma instead of "f.". I haven't found in the code if abbreviatio... - 05:23 PM bug #6100: Name parser problems
- Basionyms (I):
Most cases refer to subgen. as infrageneric marker. According to Art. 5A.1. of the code subg. is th... - 05:11 PM bug #6100: Name parser problems
- Wolf-Henning Kusber wrote:
> Andreas Müller wrote:
> > Hybrids (2):
> >
> > * Swida x friedlanderi (W.H.Wagner ... - 04:49 PM bug #6100: Name parser problems
- Andreas Müller wrote:
> Ex authors:
>
> * all the cases seem to follow the format Lycopersicon lycopersicoides A... - 04:48 PM bug #6100: Name parser problems
- R.Br.ter => fixed with ce3ed240325c
- 04:43 PM bug #6100: Name parser problems
- Andreas Müller wrote:
> Hybrids (2):
>
> * Swida x friedlanderi (W.H.Wagner jun.) Holub => the problem here is... - 04:41 PM bug #6100: Name parser problems
- Ex authors:
* all the cases seem to follow the format Lycopersicon lycopersicoides A.Child ex (Dunal) J.M.H.Shaw ... - 04:37 PM bug #6100: Name parser problems
- Hybrids (2):
* Swida x friedlanderi (W.H.Wagner jun.) Holub => the problem here is "jun." in the author
fix... - 04:34 PM bug #6100: Name parser problems
- Andreas Müller wrote:
> Hybrids:
> * Pterocypsela x mansuensis (Hayata) C.I Peng => the problem here is the missi... - 04:26 PM bug #6100: Name parser problems
- Hybrids:
* Pterocypsela x mansuensis (Hayata) C.I Peng => the problem here is the missing dot after "C.I" ! Is t... - 08:24 PM Revision 18ae79e1 (cdmlib): ref #6100 comment open issues with accent acute
- 08:11 PM task #6158 (Resolved): Update EDIT documentation from svn to git
- 08:09 PM Revision e838ffcc (cdmlib): ref #6100 fix Sant'Anna parsing
- 08:01 PM Revision 454d0d3d (cdmlib): ref #6100 fix Man in 't Veld and De la Torre (maybe fixed already before) and add some hybrid stuff
- 07:59 PM Revision 35475a8f (cdmlib): cleanup
- 06:33 PM feature request #6428 (New): Handle fungi authors in name parser (and model)
- see https://dev.e-taxonomy.eu/redmine/issues/6100?#note-13 for examples
- 06:28 PM Revision 78c82898 (cdmlib): ref #6100 fix author issues for la Croix, ´t Hart and C.I
- 05:58 PM Revision 7301dfbf (cdmlib): ref #6100 fix parser subgen. and forma
- 04:47 PM Revision ce3ed240 (cdmlib): ref #6100 fix parser for bis and ter in author string
- 04:35 PM Revision 4c91a094 (cdmlib): ref #6100 fix parser for jun. in author string
- 04:30 PM Revision 37373dbd (taxeditor): Extend troubleshooting site
- - added problem is user home is on a network drive
- 04:12 PM feature request #5983 (Resolved): Better parsing of hybrid names
- Please review if all relevant cases are covered by the new parser.
- 11:19 AM feature request #5983 (In Progress): Better parsing of hybrid names
- 04:09 PM Revision a96a9d32 (cdmlib): ref #5983 and ref #6410 parsing of hybrid formulas with missing name parts
- 03:06 PM Revision a47c6104 (cdmlib): ref #6158 Update documentation from svn to git (cdmlib-print)
- - update links from trac to redmine
- update links to cybertaxonomy.eu - 02:49 PM Revision 6059a315 (cdm-server): ref #6158 Update documentation from svn to git
- - update links from trac to redmine
- update links to cybertaxonomy.eu - 02:34 PM Revision da0280bf (cdm-dataportal): ref #6158 Update documentation from svn to git
- - update links from trac to redmine
- update links to cybertaxonomy.eu - 02:01 PM Revision 0dab2caa (cdmlib): ref #6158 Update documentation fro svn to git
- - update links from trac to redmine
- update links to cybertaxonomy.eu
- increase maven-site-plugin version to 3.3 - 01:59 PM Revision 5065f99f (taxeditor): ref #6158 Update documentation from svn to git
- - update links from trac to redmine
- update links to cybertaxonomy.eu
- increase maven-site-plugin version to 3.3 - 12:51 PM feature request #6315 (Resolved): Implement setSecundumForSubtree in TaxEditor
- Applied in changeset commit:taxeditor|d898479a7e96e9b83ca7042327ab076846fe143c.
- 12:51 PM Revision d898479a (taxeditor): fix #6315: adapt the setSecundum for subtree functionality in editor
- 10:57 AM bug #6262 (Resolved): Implement Rights reusable in TaxEditor
- Applied in changeset commit:taxeditor|8dbcbc43e5cc155eea9d70af88fc937325fb1927.
- 10:57 AM Revision 61b8e368 (taxeditor): ref #5691: move description setting to an own thread in referencing objects view
- 10:57 AM Revision 8dbcbc43 (taxeditor): fix #6262: add possibility to reuse rights in editor
- 10:53 AM Revision 7e4c5c5b (cdmlib): ref #6262: adding funtionality to library to access rights for selection dialog
- 10:51 AM Revision 3027adc5 (cdmlib-apps): ref #6410 adapt NepenthaceaeActivator
- 10:50 AM Revision 8072bd02 (cdmlib-apps): ref #6419 adapt to CdmRepository in cdmlib-app
- 10:45 AM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
- moved the setting of the description to its own thread to avoid the "Invalid thread access" exception. And clear righ...
- 10:39 AM Revision a9aabce2 (cdmlib): ref #6406 revert MarkupTransformer temporarily to allow compilation
- 10:29 AM Revision 480e8ef4 (cdmlib): ref #6410 fix markup compile issues
- 10:29 AM Revision a3e316c8 (cdmlib): ref #6419 some remaining CdmRepository issues
- 10:19 AM Revision 1b105214 (cdmlib): ref #6427 javadoc
- 10:16 AM bug #6427 (New): Improve Matching for Reference.title and abbrevTitle
- Currently we have EQUAL_REQUIRED on title which is to strict as also an abbrevTitle is sufficient.
We need a rule ... - 10:09 AM Revision 7e5b7051 (cdmlib): ref #6410 Latest changes to Markup import
- 12:20 AM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
- Andreas Müller wrote:
> A last issue: if possible it would be more intuitive if the label textfields could be placed... - 12:09 AM feature request #5474 (Feedback): TermEditor menu should be more structured
- Separator works now.
i18n for "others" still does not work. - 12:02 AM feature request #5671 (Feedback): Name selection should not allow self referencing name relationships
- 12:01 AM feature request #5671: Name selection should not allow self referencing name relationships
- Seems to be solved for name relationships but still open for taxon relationships.
Also for inreferences we need to...
02/16/2017
- 11:59 PM bug #6426 (New): Avoid stack overflow in self referencing references
- happens in cache strategy:
~~~
login : admin
editor version : 4.6.0.201702161652
server : test.e-taxonomy.eu (e... - 11:44 PM feature request #5714 (Closed): In Original Source Type dropdown show Primary Taxonomic Source first
- Seems to be correct now
- 11:39 PM bug #5924: Change password leads to bad credentials
- Seems to work
- 11:31 PM task #1606 (Feedback): Restrict filtered selection of in references to the respective reference types
- 11:26 PM task #1606: Restrict filtered selection of in references to the respective reference types
- When trying to select a reference for an article with "?" I got the following exception:
~~~
login : admin
edito... - 11:04 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
- The above exceptions appears often though not 100% reproducable.
Also when a new object is selected the dialog do... - 10:58 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
- when canceling the job it looks like it sometimes still shows the old records (for an old selection) this may be misl...
- 10:48 PM bug #5691 (Feedback): Referencing objects view makes editor inresponsive if an object references many objects
- I got an "Invalid thread access" exception when testing it for reference "The International Plant Names Index (2012)....
- 10:41 PM feature request #922 (Closed): Implement compareTo method in IdentifiableEntity properly
- Moved the tests down to the subclasses
- 10:35 PM Revision c47e320c (cdmlib): cleanup
- 10:35 PM Revision 8c57ca35 (cdmlib): new factory methods for sources
- 10:35 PM Revision 9bd28371 (cdmlib): cleanup
- 10:35 PM Revision b5b4a36c (cdmlib): ref #922 move compareTo test to subclasses
- 10:35 PM Revision f8b4b762 (cdmlib): Cleanup
- 09:33 PM bug #6304 (Closed): Deleting of Person used as user does not work
- 09:27 PM feature request #6308 (Feedback): Add configuration dialog for the deletion of synonyms in name editor
- 09:26 PM feature request #6308: Add configuration dialog for the deletion of synonyms in name editor
- Generally works, but if name could not be deleted (because in use) 2 warning appear, first is about synonym delete, s...
- 09:09 PM bug #6425 (New): Problems with synonyms in taxon navigator comparator
- When having natural ordering switched on and navigator synonyms (experimentell feature in Customize View -> Content) ...
- 09:01 PM bug #6424 (Closed): Empty name creates problem/NPE in name editor
- When pressing return on the end of the synonymy list a new empty record appears. When trying to save it is labeled "C...
- 08:55 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
- Generally the functionality seems to work well.
- 08:54 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
- The progressbar does not seem to work. Is this because it is not yet correctly implemented in the underlying cdmlib m...
- 08:53 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
- Trying to create a new Reference in the reference selection box throws an NPE when clicking on ok:
~~~
login : ad... - 08:52 PM feature request #6315: Implement setSecundumForSubtree in TaxEditor
- * If neither accepted taxa nor synonyms are checkedthe OK button should be disabled
* "mehrfach verwendete" taxa s... - 08:35 PM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor
- Some layout and labeling issues:
* The New secundum reference label is not translated
* "anwenden auf akzeptier... - 08:18 PM bug #6376 (Closed): NPE when deduplicating agent
- Difficult to test as there is no description how to reproduce. Anyway I tested some deduplications and it works. Also...
- 04:51 PM Revision aaf58910 (taxeditor): ref #6347 fix typo and add label
- 08:31 AM bug #6262: Implement Rights reusable in TaxEditor
- Andreas Müller wrote:
> Katja Luther wrote:
> > for reusability of rights we need a service to get the text and the...
02/15/2017
- 05:26 PM bug #5639: NPE when showing name relationships for a name originally related to a deleted name
- Katja Luther wrote:
> I could reproduce it with following settings:
>
> name1 has nameRelation to name2 and name2... - 02:10 PM bug #5639: NPE when showing name relationships for a name originally related to a deleted name
- I could reproduce it with following settings:
name1 has nameRelation to name2 and name2 has another nameRelation t... - 05:13 PM bug #6262: Implement Rights reusable in TaxEditor
- Katja Luther wrote:
> for reusability of rights we need a service to get the text and the uuid of the rights, maybe ... - 03:16 PM bug #6262 (In Progress): Implement Rights reusable in TaxEditor
- for reusability of rights we need a service to get the text and the uuid of the rights, maybe it would be nice to hav...
- 03:19 PM Revision bce90273 (cdmlib): ref #6262: create dao and service for rights
- 02:10 PM feature request #5839 (Duplicate): Improve error message when server can't be reached
- 01:19 PM bug #6423 (New): searching for synonyms and taxa in advanced search does not return all synonyms
- Hallo,
mir scheint, die advanced name search sammelt Synonyme, wenn die entsprechende Option angehakt ist, nur seh... - 12:48 PM Revision 994548e2 (taxeditor): merge
- 11:25 AM Revision 30846ae3 (taxeditor): ref #5691: minor
- 11:25 AM Revision 48621fdd (taxeditor): fix deletion of new created entities in bulk editor
- 10:48 AM Revision 2da9ade2 (taxeditor): ref #6419 renaming CdmApplicationDefaultConfiguration to CdmRepository
- 10:30 AM Revision 7f6cc57e (cdmlib): ref #6214: add the PreferencePredicates for the project specific preferences
- 09:59 AM task #6421: Document workaround for user.home location problem in Windows
- Andreas Kohlbecker wrote:
> Hi Patrick, would you volunteer to care for this?
Yes. I still have an open documenta... - 09:16 AM task #6421: Document workaround for user.home location problem in Windows
- Hi Patrick, would you volunteer to care for this?
- 09:05 AM task #6421 (Closed): Document workaround for user.home location problem in Windows
- see #5848#note-9 for details
- 09:55 AM Revision f380627e (cdm-vaadin): ref #6419 renaming CdmApplicationDefaultConfiguration to CdmRepository
- 09:55 AM Revision 41356809 (cdmlib): ref #6419 renaming ICdmApplicationDefaultConfiguration to ICdmRepository
- 09:35 AM Revision a735bbbf (cdm-vaadin): ref #5285 attempt to avoid using the CdmSpringContextHelper
- using DI to get rid of CdmSpringContextHelper, but got stuck due to the complexity and variety of the 'design pattern...
- 09:14 AM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
- Thank you Ben for this analysis.
I fully agree, we cant do much about this exept providing good documentation for ... - 09:13 AM bug #6422 (New): 'Specified key was too long' on creating a new database
- issue copied from #5848
Originally reported by Ben Stöver. Had problems when creating a new database from within t...
02/14/2017
- 01:58 PM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
- I tested it again and it now uses "C:\Users\bstoe_01" as the user profile path. This is a local copy of the profile w...
- 12:56 PM feature request #5848 (Feedback): Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
- This issue seems to be related to a java bug which existed in java versions pre jdk 1.8: https://duckduckgo.com/?q=Sy...
- 12:29 PM feature request #5848: Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
- Patrick merged the current code into my branch and I tested it. I currently always run the EDITor with the option "-D...
- 10:44 AM bug #6418 (In Progress): Status line does not update after completing the update of the referencing objects view
- the message which keeps staying in the status line is the title of one of the first jobs. The job is finsihed and the...
- 08:17 AM bug #6418 (Worksforme): Status line does not update after completing the update of the referencing objects view
- After finishing the update of the referencing objects view the status line still shows "Updating referencing objects ...
- 10:01 AM task #6419 (Closed): CdmApplicationDefaultConfiguration should be named CdmRepository
- 10:01 AM task #6419 (Resolved): CdmApplicationDefaultConfiguration should be named CdmRepository
- Applied in changeset commit:cdmlib|be652f06b6a64c10433a94b46f88c6458145395f.
- 08:59 AM task #6419 (In Progress): CdmApplicationDefaultConfiguration should be named CdmRepository
- 08:47 AM task #6419 (Closed): CdmApplicationDefaultConfiguration should be named CdmRepository
- 10:01 AM Revision be652f06 (cdmlib): fix #6419 renaming CdmApplicationDefaultConfiguration to CdmRepository
- 09:59 AM Revision 045ee12a (cdmlib): ref #3320 renaming CdmApplicationDefaultConfiguration to CdmRepository
- 08:49 AM task #6420 (New): Autowire CdmApplicationDefaultConfiguration instead of subclasses of ICdmServ ice
- All classes autowiring any service class should rather be autowiring CdmApplicationDefaultConfiguration wheras the in...
- 08:15 AM bug #5691 (Resolved): Referencing objects view makes editor inresponsive if an object references many objects
- The problem of unresponsible editor is solved but the status line keeps the message "Updating referencing objects vie...
02/13/2017
- 11:05 PM task #6417 (New): [DISCUSS] Need and properties of a NomenclaturalReference class
- Pure nomenclatural references do have some specific properties only they have.
* very often articles and book sec... - 03:52 PM feature request #6315 (Resolved): Implement setSecundumForSubtree in TaxEditor
- implemented the menu item for the navigator. At the moment it is possible to remove the sec reference of the subtree ...
- 03:49 PM Revision 01506970 (taxeditor): minor
- 03:33 PM Revision 61a85864 (taxeditor): code cleaning
- 03:33 PM Revision 051bdc14 (taxeditor): improve delete handling in polytomous key node editor
- 01:10 PM feature request #6416 (New): Change sortindex of keynodes
- Sometimes it is needed that the alternatives of a polytomous key node are sorted in a different way. We need an opera...
- 12:04 PM bug #2495: IpniServiceTest fails from time to time
- I applied this fix because I was blocked by the IPNI Service not being available for quite some time. The cdmlib coul...
- 10:26 AM bug #2495: IpniServiceTest fails from time to time
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Andreas Kohlbecker wrote:
> This is a good suggestion. Howev... - 10:24 AM bug #2495 (Feedback): IpniServiceTest fails from time to time
- 08:21 AM bug #2495 (Closed): IpniServiceTest fails from time to time
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> > fixed by commit:9a211f9
> >
> > this is actually very quic... - 11:02 AM Revision d5020a07 (cdmlib): ref #2495 Revert "prevent ipni tests from failing when external server is absent"
- This reverts commit 9a211f95133eddfd9fe49a25bbd22ca4a5b841c5.
- 10:52 AM Revision fdba7267 (cdmlib): minor documentation improvement
- 10:42 AM Revision a1dac6b2 (cdm-vaadin): #5285 removing problematic multi VaadinServlet configuration
- 10:29 AM bug #6415 (New): Create test suite for availability testing of external services
- Availability of external services needs to be tested outside cdmlib standard maven testing to avoid failing tests in ...
- 08:33 AM Revision 69d8e66b (cdm-server): follow up on package change in cdmlib
02/10/2017
- 09:34 PM bug #2495 (Feedback): IpniServiceTest fails from time to time
- Andreas Kohlbecker wrote:
> fixed by commit:9a211f9
>
> this is actually very quick and easy to achieve:
>
> T... - 05:27 PM bug #2495 (Closed): IpniServiceTest fails from time to time
- fixed by commit:9a211f9
this is actually very quick and easy to achieve:
~~~java
@Before
public void setUp(... - 05:17 PM Revision 9a211f95 (cdmlib): prevent ipni tests from failing when external server is absent
- 05:11 PM Revision 56695721 (taxeditor): adapted MANIFEST.MF
- 04:59 PM Revision b5d2e0e3 (taxeditor): minor
- 04:51 PM Revision aafb899a (cdm-vaadin): documentation
- 04:49 PM Revision f7765feb (taxeditor): minor
- 04:47 PM Revision 09a4be52 (cdm-webapp): ide launcher added
- 04:44 PM Revision e6b01164 (cdm-vaadin): ref
- 04:42 PM Revision ad9b6d23 (cdmlib): ref #5285 addon structure for cdmlib-remote extensions like cdm-vaadin with autodetection
- 04:42 PM Revision 144ad436 (cdmlib): file formatting reg. line breaks and a README
- 04:42 PM Revision f5fc15f9 (cdmlib): disabling lojǵ4j debugging in ide launcher
- 03:18 PM Revision 57aa2fdb (taxeditor): ref #6315: implement set secundum reference for subtree in editor
- 03:03 PM Revision a59e10db (cdmlib): ref #6315: minor changes for the implementing setSecundum for subtree in editor
- 02:26 PM Revision d3a736ec (cdm-webapp): disabling lojǵ4j debugging in ide launcher
- 02:03 PM bug #6414 (New): use short name for excluded, unplaced taxa when the genus of the parent taxa is different
- This is handled in `cdm_dataportal.module#cdm_dataportal_shortname_of()`
However, we should consider solving this ... - 11:36 AM Revision 3e6e1b76 (cdmlib): ref #6410 latest changes to Markup import to match Nepenthaceae import
- 11:36 AM Revision 96afcf2f (cdmlib): cleanup
- 10:28 AM Revision 2070f523 (cdmlib): managin maven-antrun-plugin and adding lifecycle maapping file for eclipse
- 10:23 AM Revision 013de4f5 (cdm-webapp): adding eclipse launcher config
02/09/2017
- 04:38 PM Revision fd9cf932 (cdm-vaadin): ref #5285 SpringUI configuration working
- - @SpringUI added and configured
- theme harmonization as has as possible without causing glitches
- updating to ... - 02:33 PM Revision 2ebeb1a9 (taxeditor): ref #4232 refactoring for comparator
- 02:29 PM Revision df366db5 (taxeditor): ref #4232: some more comparators to adapt
- 01:37 PM Revision bdcfdeab (taxeditor): ref #4232: adapt comparator of filteredSelection dialogs to fulfill the comparator contract
- 01:31 PM Revision fc758deb (taxeditor): ref #4232: adapt comparator to comaparator contract
- 01:09 PM Revision 7229f9d4 (cdmlib): ref #4232: made some changes to fullfill the comparator contract
- 12:30 PM feature request #6413: [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
- My preferred solution: an option (with similar functionality as the "add new specimen" option for a field unit in the...
- 11:45 AM bug #6299: Error when deleting reference in bulk editor
- Patrick Plitzner wrote:
> I don't know how to reproduce this. Does this also happen in local workspace environment?
... - 11:39 AM bug #6299 (Feedback): Error when deleting reference in bulk editor
- I don't know how to reproduce this. Does this also happen in local workspace environment?
02/08/2017
- 08:09 PM feature request #5474 (Resolved): TermEditor menu should be more structured
- 05:25 PM feature request #5474: TermEditor menu should be more structured
- Added a separator. Implemented use of i10n but could not check if it works
- 05:23 PM Revision 9d215095 (taxeditor): ref #5474 Add separator and i10n to Term menu
- 05:12 PM feature request #6413 (Closed): [DISCUSS] How to create type duplicates (e.g. isotypes) for a taxon name
- Coming from the name editor it is currently only possible to add a new type designation in order to create a type spe...
- 03:34 PM Revision dda1d525 (taxeditor): ref #5691: fix the problem that ref. objects view does not has its own thread
- 03:31 PM bug #6281 (In Progress): delete synonym with annotations throws exception
- reverted the orphan-delete removal and try to reproduce when the problem appears. In a cdmlib test everything works f...
- 11:22 AM bug #6281: delete synonym with annotations throws exception
- after some more research it seems to be a problem of orphanRemoval=true.
I removed the orphan-removal annotation ... - 11:15 AM bug #6281 (Resolved): delete synonym with annotations throws exception
- Applied in changeset commit:cdmlib|20cfb7a6d5e466a0d9444be958537e3db2a8732d.
- 02:13 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- Fixed order of "Other" and "Unknown"
- 02:11 PM Revision 46360ec1 (taxeditor): ref #5714 The last two terms are always "Other" followed by "Unknown"
- 01:34 PM Revision 029f979a (cdm-vaadin): ref #5285 replacing VaadinServlet by SpringVaadinServlet
- 01:31 PM Revision bdaf82ec (cdm-vaadin): deprecating unused class
- 12:04 PM bug #6412 (New): Improve display of gathering event in specimen default view
- There are multiple issues:
* If no collecting areas exist the label is still shown together with the following att... - 11:59 AM Revision b162c633 (taxeditor): changes in misapplicationDeletionOperation
- 11:52 AM Revision ba775160 (taxeditor): missing Messages changes
- 11:15 AM Revision 20cfb7a6 (cdmlib): fix #6281: remove orphan removal for collections
- 11:12 AM feature request #6308 (Resolved): Add configuration dialog for the deletion of synonyms in name editor
- Applied in changeset commit:taxeditor|2bffeed29e530122d2885344f716cda61a9cc825.
- 11:12 AM Revision 2bffeed2 (taxeditor): fix #6308: add delete configuration dialog for synonyms and misapplied names
- 11:07 AM Revision 0fd8512c (cdm-vaadin): cleaning up a bit
- - removing unnesscary main log4j.properties
- suppressing HHH90000003 deprication warning
- removing commented be... - 10:58 AM Revision fb70a9a7 (cdm-vaadin): ref #5285 adding vaadin-spring to the pom.xml
- 08:49 AM task #5285 (In Progress): Use Vaadin Spring Add-on
02/07/2017
- 05:22 PM bug #6388 (Closed): Duplicate entry exception when adding types to a taxon
- works fine
- 05:19 PM bug #6300 (Closed): DataIntegrityViolationException when saving a type
- creating a new type specimen with only a protected title cache and saving it works fine
- 05:16 PM bug #6336 (Closed): NPE when deleting recently created media
- works fine
- 05:12 PM bug #6372 (Closed): NPE when using ShowView - Datasource
- Works fine!
Tested it with a corrupted datasources file - 04:21 PM bug #2939 (Closed): ehcache diskStore conflict?
- 03:51 PM Revision d8cef48f (taxeditor): re-enabling eu.etaxonomy.taxeditor.test in pom
- 03:49 PM Revision 59b24aa6 (taxeditor): fixing bundle and tycho plugin config
- 03:35 PM Revision 0d5c6b4c (taxeditor): Use titleCache for FieldUnits in specimen editor
- 03:32 PM Revision a89bf067 (taxeditor): revert adding test into parent pom
- 02:20 PM Revision f15bc4f3 (taxeditor): Revert "removing all .classpath and .project files"
- This reverts commit c02ad176b4c6452b302560e254f319b7260cd6d8.
- 02:20 PM Revision b3b43c24 (taxeditor): Revert "Add .project files"
- This reverts commit 7b5184094bda79a0c13e879907eaaafe3b7561b2.
- 02:15 PM Revision b528c871 (taxeditor): adding lifecycle-mapping-metadata.xml to avoid m2e build plugin problems (needs activation in the properties in Eclipse/Preferences/Maven/Lifecycle Mappings)
- 02:15 PM Revision 2555ef70 (taxeditor): adding bin folders to gitignore
- 12:05 PM Revision 7b518409 (taxeditor): Add .project files
- - revert of c02ad176b4c6452b302560e254f319b7260cd6d8
- 11:48 AM bug #6311 (Rejected): Refactor IdentifiableEntity.compareTo method
- Close the ticket as we moved the methods to TaxonNameBase and TaxonBase and the compareToX methods do not implement t...
- 11:30 AM feature request #922 (Feedback): Implement compareTo method in IdentifiableEntity properly
- Looks fine, the only thing that should be moved, are the tests for the new methods. At the moment the methods are sti...
- 09:47 AM Revision 199029a4 (taxeditor): Add missing dependencies to feature.platform
- - This allows to start the Taxeditor directly in a fresh workspace.
Otherwise you would have to edit the launch confi... - 09:47 AM Revision 3298d416 (taxeditor): ref #6401 Remove maxPermSize argument (not supported anymore in jdk1.8)
- 08:45 AM bug #6411 (Rejected): instructions on installing the nebula widget as missing
- Yes this is solved.
02/06/2017
- 06:36 PM bug #6411: instructions on installing the nebula widget as missing
- This is solved by setting the target platform, right? Should we close this as invalid?
- 03:12 PM bug #6411 (Rejected): instructions on installing the nebula widget as missing
- Instructions on installing the nebula widget is missing in the taxeditor site documentation
1. go to help->
1. ad... - 06:03 PM Revision 2339128f (cdmlib): ref #2939 option to set the CacheManager directly, needed for the taxeditor
- 06:01 PM Revision 506d9934 (taxeditor): fix #2939 removing EhCacheConfig from application contexts and configuring the CacheManager explicitely
- 06:01 PM Revision dd7cf69d (taxeditor): ignoring .classpath files
- 06:01 PM Revision e4e551bd (taxeditor): adding script for easier project setup
- 06:01 PM Revision c02ad176 (taxeditor): removing all .classpath and .project files
- 06:01 PM Revision d0cd97fc (taxeditor): adding eu.etaxonomy.taxeditor.test as subproject
- 06:00 PM Revision 0ec8f6d7 (taxeditor): fix #2939 explicitely adding CdmServiceCache to test applicationContext
- 05:59 PM Revision 4d92688f (taxeditor): fix #2939 removing EhCacheConfig from application contexts and configuring the CacheManager explicitely
- 04:58 PM task #6401 (Closed): Update working environment to jdk 1.8
- 02:55 PM Revision 4c75c819 (taxeditor): ignoring .classpath files
- 02:24 PM Revision f116a500 (taxeditor): adding script for easier project setup
- 02:13 PM Revision d317abff (taxeditor): removing all .classpath and .project files
- 02:12 PM Revision 5913fb47 (taxeditor): adding eu.etaxonomy.taxeditor.test as subproject
- 01:05 PM Revision c57e7cd5 (taxeditor): fix #2939 explicitely adding CdmServiceCache to test applicationContext
- 10:09 AM Revision 7cdc874a (cdmlib): changes in specimen import
- 09:47 AM Revision f12ac52e (taxeditor): some changes for specimen import
- 08:28 AM Revision 7e9bb88a (cdmlib): ref #2939 property to set the cacheManager diskstore
- 08:26 AM Revision 68fdcde3 (taxeditor): fix #2939 set up of cacheManager in test applicationContext
02/04/2017
- 10:47 AM Revision eec1cd2d (cdmlib-apps): ref #6410 add NepenthaceaeActivator
- 10:46 AM Revision 7d882578 (cdmlib-apps): ref #6362, ref #6365 remove occurrences of NonViralName, BotanicalName and ZoologicalName in cdmlib-app
- 10:35 AM Revision 67193ea6 (cdmlib): ref #6410 Nepenthaceae, handle known collections, issues and fulldates
- 10:02 AM Revision 3ee9fbcc (cdmlib): ref #6401, ref #6404 doc
02/03/2017
- 10:38 PM Revision 7e5f47cb (taxeditor): ref #2939 adapting taxeditor spring configuration to new ehCacheManager configuration - WARNING: store location still missing!
- 04:33 PM Revision 15911e5d (cdm-vaadin): ref #2939 adapting vaddin appcontext to new ehcache configuration
- 04:24 PM Revision e3e0e316 (cdmlib): ref #2939 taking configurations out of the compenent scan\n, a more finegraned strategy is needed for the variety of situations we have to deal with
- 04:24 PM Revision f2b6ba81 (cdmlib): ref #2939 renaming moved class references in log4j files
- 03:02 PM Revision cf4b82a5 (taxeditor): fix import issue
- 02:50 PM Revision a4caff94 (cdm-vaadin): ref #6362 fix NonViralName occurrence in vaadin
- 02:38 PM Revision 0de7b2f4 (cdmlib): simplify generics for SpecimenOrObservationBase
- 02:37 PM Revision 804a5884 (taxeditor): fix generics
- 02:03 PM Revision b8601e0c (taxeditor): ref #6362 remove occurrences of NonViralName in code and some cleanup
- 01:44 PM Revision 1dd3792c (cdmlib): ref #6409 preliminary set Level3 test to @Ignore to avoid infinite loop
- 01:44 PM Revision 514a53eb (cdmlib): cleanup
- 01:44 PM Revision aaf432fa (cdmlib): cleanup merge problems
- 01:44 PM Revision e2c8bd0e (cdmlib): cleanup
- 01:44 PM Revision d7919b1c (cdmlib): ref #6362, ref #6365 remove occurrence of NonViralName, BotanicalName, ZoologicalName and others
- 01:43 PM Revision 7a7b09d4 (cdm-dataportal): fixing 2 bugs in media caption creation
- 01:27 PM bug #6409 (Closed): Fix failing Level3 validation in ValidationTest introduced by removing TaxonNameBase subclasses
- method is testLevel3ValidationWithValidName was set to @Ignore
The problem occurs in org.hibernate.validator.inter... - 01:18 PM Revision 0afc0c3c (cdm-dataportal): palmweb: disabling custom media caption theme function
- 12:52 PM Revision d1b5fd22 (cdm-dataportal): Merge tag '4.5.4' into develop
- tag for hotfix release 4.5.4
- 12:52 PM Revision bc8dcfa0 (cdm-dataportal): Merge branch 'hotfix/4.5.4'
- 12:36 PM feature request #3580 (Duplicate): Write permission error with temporary cdmserver echache dir
- 12:33 PM bug #1753 (Worksforme): error in server due to level2 cache
- this is no longer a problem
- 12:29 PM feature request #5848 (Resolved): Problem with writing ehCache folder on network drive using UNC path (net.sf.ehcache.CacheException)
- This issue most probably has been fixed while solving #2939
@Patrick: please review - 12:22 PM bug #2939 (Resolved): ehcache diskStore conflict?
- Applied in changeset commit:cdmlib|1fd4a547b99301f06524ab828dc5eb4ef8af3c10.
- 12:21 PM Revision 1fd4a547 (cdmlib): fix #2939 dynamic configuration of the ehcache store location per remote instance
- 12:21 PM Revision 7a0bcdb6 (cdmlib): ref #2939 refactoring CdmCacher to use cachemanger spring bean - not fully working yet
- 11:15 AM Revision 5805c395 (cdmlib): #6401 update generics for java1.8 upgrade
- 11:15 AM Revision 5a9b66ae (cdmlib): Cleanup
- 10:53 AM bug #6408 (Resolved): NPE in AbcdParseUtility
- Applied in changeset commit:cdmlib|5adaf48060a375396e01bbc9eaea06c114b0403a.
- 10:52 AM bug #6408 (Closed): NPE in AbcdParseUtility
- ~~~
login : admin
editor version : 4.5.1
server : 160.45.63.230 (edit-WS I) / caryophyllales_demo_01
schema... - 10:52 AM Revision 5adaf480 (cdmlib): fix #6408 Fix potential NPE in AbcdParseUtility
- 10:08 AM Revision 3a269e2c (taxeditor): ref #6401 Add comment for increasing tycho version
- 09:36 AM Revision 02569618 (taxeditor): ref #6401 Update jetty plugin to work with jdk1.8
- 09:36 AM Revision 606b6d7c (cdmlib): ref #6401 Update jetty plugin to work with jdk1.8
02/02/2017
- 11:04 PM bug #6404: StackOverflow when compiling large java classes in Java8 (jdk1.8)
- @PP: if you still if the old version of the compilerArgs, could you please add them to the ticket?
- 10:59 PM bug #6404 (Rejected): StackOverflow when compiling large java classes in Java8 (jdk1.8)
- We decided to NOT use the compilerArgs but rather try to fix the large class issue #6406.
Also the above compilerA... - 01:09 PM bug #6404 (Closed): StackOverflow when compiling large java classes in Java8 (jdk1.8)
- Andreas M.: Can you link the ticket for the MarkupTransformer class to this ticket?
- 01:06 PM bug #6404 (Rejected): StackOverflow when compiling large java classes in Java8 (jdk1.8)
- After updating to Java 8 compiling via `mvn clean install` results in a StackOverflow. (compiling in Eclipse works be...
- 11:03 PM bug #6407: Upgrade maven compiler plugin to latest version
- Maybe a related commit:1ddde622ae10b01976cdb99fb50a469a5506ca7e
- 10:58 PM bug #6407 (New): Upgrade maven compiler plugin to latest version
- Currently this is not yet possible as it results in test errors probably related to missing aspectj support. This pro...
- 05:16 PM bug #6405 (Closed): CdmPermissionVoter handles merged and separate CdmAuthorities the same
- 05:16 PM bug #6405: CdmPermissionVoter handles merged and separate CdmAuthorities the same
- reverting commit:cdmlib|5cb08c3f by commit:cdmlib|bb902a4
- 04:55 PM bug #6405 (Resolved): CdmPermissionVoter handles merged and separate CdmAuthorities the same
- Applied in changeset commit:cdmlib|3e29fc14020cbf9604f9ec4a8ae87fcadbbb3d3f.
- 02:56 PM bug #6405 (Closed): CdmPermissionVoter handles merged and separate CdmAuthorities the same
- The CdmPermissionVoter must take all CdmAuthorities into account which only differ by the property if any is defined ...
- 04:56 PM task #6401 (Resolved): Update working environment to jdk 1.8
- We still need to check for any dependencies that can be updated now. Or we leave this to the next general dependency ...
- 04:54 PM task #6401: Update working environment to jdk 1.8
- Some generics in model needed to be updated (no ticket for this). This also lead to a refactoring for DefinedTermBase...
- 04:51 PM bug #6406 (In Progress): Refactor MarkupTransformer class which is too large
- 04:50 PM bug #6406 (In Progress): Refactor MarkupTransformer class which is too large
- The large class creates problems when upgrading to java 1.8 (see #6401 and #6404).
As a work around we now comment... - 04:41 PM Revision b6bb07b9 (taxeditor): ref #6309 Add missing l10n String constant to Messages.java
- 04:35 PM Revision bb902a45 (cdmlib): Revert "ref #6401 fix failing SecurityTest (due to wrong handling of furtherVotingResult in CdmPermissionVoter"
- This reverts commit 5cb08c3f89abfd1bcb5af75f0b2882798418f27a.
- 04:35 PM Revision 3e29fc14 (cdmlib): fix #6405 more tests for CdmPermissionVoter.furtherVotingDescisions and fixing the premature returning of DENIED votes made there
- 04:35 PM Revision 792e3464 (cdmlib): ref #6405 tests for the CdmPermissionVoter
- 04:35 PM Revision ae3b8a5d (cdmlib): ref #922 and #6311 javadoc
- 04:30 PM bug #6311 (In Progress): Refactor IdentifiableEntity.compareTo method
- The 2 fixes dfc40f67 and 44e2abe8 primarily fixed #922 and not THIS ticket.
However, during this process we realiz... - 03:00 PM bug #6311 (Resolved): Refactor IdentifiableEntity.compareTo method
- Applied in changeset commit:cdmlib|dfc40f673035647ff6af03097229edd1e7712222.
- 01:27 PM bug #6311 (In Progress): Refactor IdentifiableEntity.compareTo method
- 04:21 PM feature request #922 (Resolved): Implement compareTo method in IdentifiableEntity properly
- Revision showed that
* the method was never used by different classes and therefore the parameter does not need t... - 04:05 PM Revision 44e2abe8 (cdmlib): ref #6311 further refactoring for compareToEntity
- 04:05 PM Revision 2fd31c0f (cdmlib): cleanup
- 03:42 PM Revision de118cd2 (taxeditor): ref #6401 Update taxeditor workspace plugins to java 8
- 03:06 PM Revision 504f6f42 (cdmlib): cleanup
- 03:00 PM Revision dfc40f67 (cdmlib): fix #6311 move compareToEntity method to TaxonName and TaxonBase classes and refactor
- 02:59 PM Revision 64923004 (cdmlib): Remove generics from BacterialNameDefaultCacheStrategy
- 02:58 PM Revision 168e8915 (cdmlib): ref #6401 Adapt generics in agent base and others
- 02:55 PM Revision 940ecc18 (cdmlib): cleanup
- 02:12 PM Revision a9450437 (taxeditor): ref #6401 Refactor comparison of specimens in factual data view
- - use titleCache comparison instead of comparing the objects themselves
- also fixes compile error for jdk1.8 - 02:11 PM Revision ca14b284 (cdmlib): ref #6401 Remove compiler args for increased stack size
- 02:10 PM bug #6304 (Resolved): Deleting of Person used as user does not work
- Applied in changeset commit:taxeditor|d1428f78d00bd439e471e03c5a13a68763818c29.
- 02:10 PM Revision d1428f78 (taxeditor): fix #6304: before deleting a person in bulkeditor check with isDeletable
- 01:56 PM bug #6309: Creating an existing user throws exception
- added a check for existence of users with the same username before saving the new user
- 01:54 PM bug #6309 (Resolved): Creating an existing user throws exception
- Applied in changeset commit:taxeditor|afc2457c7a4661cd1577fd486211da032354a61c.
- 01:54 PM Revision afc2457c (taxeditor): fix #6309: check for existence of user before saving a new user
- 01:53 PM Revision 0e5acce8 (cdmlib): merge for groups has to check for existing and changed authorities before merge the group
- 01:37 PM bug #6388 (Resolved): Duplicate entry exception when adding types to a taxon
- should be solved with fixing #6300. Could not reproduce it anymore.
- 01:07 PM bug #6300: DataIntegrityViolationException when saving a type
- Applied in changeset commit:taxeditor|e904eb89dc409f901b858e5936cbc08eef82f7fc.
- 01:06 PM bug #6300 (Resolved): DataIntegrityViolationException when saving a type
- I removed the bindNullSession call and now it works. Please have a look, if everything else works, too. (I tested cre...
- 01:03 PM Revision aa819c53 (taxeditor): remove comment
- 01:01 PM Revision e904eb89 (taxeditor): fix #6300: the newDerivedUnitWizard should not have a session
- 11:50 AM Revision a24dbf07 (cdmlib): emall fix for selection of reference as inreference
- 10:52 AM bug #5216: Changing the CRUD flags of an existing GrantedAuthority in the CdmAuthorityEditorInput causes an MySQLIntegrityConstraintViolationException
- added a check for existence of all authority strings and replace the already existing ones with the ones already in d...
- 10:04 AM bug #5216 (Resolved): Changing the CRUD flags of an existing GrantedAuthority in the CdmAuthorityEditorInput causes an MySQLIntegrityConstraintViolationException
- Applied in changeset commit:taxeditor|a789364c344b94462f1e277ee1855eea2615e59b.
- 10:46 AM Revision 27c25f7e (taxeditor): minor
- 10:04 AM Revision a789364c (taxeditor): fix #5216: merge grantedAuthority checks for existing grantedAuthority first and some other fixes for grantedAuthority handling in editor
- 08:41 AM bug #6403 (New): palmweb: Show image thumbnail tickbox no longer working
- This could be due to divergence of the palmweb special code with the dataportal core code.
The purpose of the specia... - 08:35 AM bug #6402 (New): palmweb: remove comment module related code and disable comments
- 07:51 AM task #6392 (Closed): selenium tests for palmweb uses data
- 01:58 AM Revision 72084210 (cdmlib): ref #6401 Upgrade jetty plugin to support j1.8
- 01:29 AM Revision f0aff81a (cdmlib): ref #6401 temporarily remove uuids from MarkupTransformer to allow compiling
- 12:26 AM Revision e2d30c43 (cdmlib): ref #6401 Improve generics for TypeDesignationStatusBase and RelationshipTermBase
- 12:23 AM Revision ad631208 (cdmlib): ref #6401 fix compilation errors in OrderedTermBaseTest
- 12:19 AM Revision 5cb08c3f (cdmlib): ref #6401 fix failing SecurityTest (due to wrong handling of furtherVotingResult in CdmPermissionVoter
- 12:17 AM Revision 53c346f1 (cdmlib): ref #6401 better distinguish IdentifiableEntity.compareTo from DefinedTermBase.compareTo
- * this is to avoid jumping to IdentifiableEntity.compareTo if DefinedTermBase.compareTo does not match generics exactly
- 12:04 AM Revision b1398c11 (cdmlib): Cleanup
02/01/2017
- 09:37 PM Revision caea94d1 (cdmlib): ref #6401 revert maven compiler plugin version as it leads to failing tests (probably related to aspectj issues and maybe others)
- 08:44 PM task #1606: Restrict filtered selection of in references to the respective reference types
- Katja Luther wrote:
> Applied in changeset commit:cdmlib|a80bb20e9da22230326d65598b4cf07ff1a5dff5.
There was a ... - 11:44 AM task #1606: Restrict filtered selection of in references to the respective reference types
- implemented for:
Article -> journal
InProceedings -> proceedings
Booksection -> book
book -> printSeries
proce... - 11:40 AM task #1606 (Resolved): Restrict filtered selection of in references to the respective reference types
- Applied in changeset commit:cdmlib|a80bb20e9da22230326d65598b4cf07ff1a5dff5.
- 08:41 PM Revision f4a1c455 (cdmlib): ref #1606 fix bug in referenceDao.getUuidAndTitleCache
- 08:37 PM Revision 5a0834fb (cdmlib): Cleanup
- 06:01 PM Revision e9c765f3 (taxeditor): increase maven-source-plugin, decrease tycho
- 04:44 PM Revision 57db64f2 (taxeditor): Update tycho version
- 04:09 PM Revision ef029497 (taxeditor): ref #6401 Update taxeditor to jdk1.8
- - Fix generic problems
- 03:34 PM Revision 5575b26c (cdmlib): ref #6392 ref #6374 fixing markerType filter was ignored
- 03:19 PM Revision 2a25d458 (cdmlib): ref #6401 Fix problems with generics due to jdk1.8
- 02:15 PM bug #3737: Protected caches for taxa and names behave inconsistent
- please review
- 02:14 PM bug #3737 (Resolved): Protected caches for taxa and names behave inconsistent
- Applied in changeset commit:taxeditor|a452be91ae106b545b4393798e666aef347a0ef1.
- 02:14 PM Revision a452be91 (taxeditor): fix #3737: improve handling of protected/not protected cache fields
- 01:54 PM task #6392 (Resolved): selenium tests for palmweb uses data
- Applied in changeset commit:cdm-dataportal|1b756c5f0a44f01502a0f88ff155e124e93860c8.
- 09:28 AM task #6392 (In Progress): selenium tests for palmweb uses data
- 01:54 PM Revision 1b756c5f (cdm-dataportal): fix #6392 test for uses and use records and refactoring of the uses feature block
- - fixing wrong assumptions for cyprus
- bibliography as pseudo feature block better testable - 11:57 AM Revision 3c5fd363 (cdmlib): ref #6401 Updated cdmlib to jdk1.8
- - Had to increase the parser stack size to avoid StackOverflow when
parsing large java classes
- https://maven.apac... - 11:49 AM task #6401 (Closed): Update working environment to jdk 1.8
- 11:43 AM Revision 6478a5d8 (cdmlib): fix #1606: minor
- 11:39 AM Revision a80bb20e (cdmlib): fix #1606: add generic type to all filters
- 11:11 AM Revision 16b736f1 (taxeditor): ref #1606: for inReferences use service methods filtering for the right referencetype
- 11:05 AM Revision 71bfbee0 (cdmlib): ref #1606: add methods to provide filter for reference type
- 09:24 AM Revision b9a4f351 (cdm-dataportal): ref #6392 problems in selenium tests for palmweb solved
- - disabled test active again
- splitting huge test method into multiple
- trimming reference citation strings in ... - 09:20 AM Revision 5e1b1f4e (cdm-dataportal): duplicating images in flora malesiana theme to fix missing images in integration portals
- 09:18 AM Revision bf4b3dfa (cdm-dataportal): using glue string for distribution list
- and using this for palmweb to make the original layout working again
- 09:16 AM Revision e6dec945 (cdm-dataportal): harmonizing indentation of feature block distribution
- 09:15 AM Revision c59f8a57 (cdm-dataportal): fixing invalid xpath to link elements
01/31/2017
- 04:03 PM Revision 4295d33d (cdm-dataportal): ref #6374 moving cdm_block_use_description_content to includes files
- 04:02 PM Revision d192702d (cdm-dataportal): ref #6374 using the correct feature block settings for use descriptions
- 02:49 PM bug #6138 (In Progress): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
- in eclipse the test is successfull, but with maven it fails...
- 12:56 PM bug #6138 (Resolved): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
- 12:55 PM bug #6138: fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
- the test does not fail anymore.
- 02:48 PM Revision e8b30a54 (cdmlib): fix #4390: add missing check for protected titleCache
- 02:16 PM bug #6374 (Closed): Uses no longer shown in palmweb portal broken
- 02:02 PM bug #6374 (Resolved): Uses no longer shown in palmweb portal broken
- Applied in changeset commit:cdm-dataportal|4feafea8403142f30c31c0a612b0b2a2de1f76bf.
- 02:02 PM Revision 4feafea8 (cdm-dataportal): fix #6374 fixing messed up UUIDs and harmonizing use descriptions block creation
- 02:01 PM Revision 99f17fa9 (cdm-dataportal): fixing type in documentation
- 02:00 PM Revision 867bd81d (cdmlib): fix #4390: update titlecache only for SpecimenOrObservationBase entities
- 12:45 PM bug #4390: Titlecache of field unit does not update when changing field unit data via derived unit facade
- please review
- 12:44 PM bug #4390 (Resolved): Titlecache of field unit does not update when changing field unit data via derived unit facade
- Applied in changeset commit:cdmlib|5d6b7e01b19c421947455d7a74bd97a907de60aa.
- 12:44 PM Revision 5d6b7e01 (cdmlib): fix #4390: update titlecache for all merged identifiableEntities
- 12:10 PM bug #5924 (Resolved): Change password leads to bad credentials
- Applied in changeset commit:taxeditor|1c082d5b9b3063e5be95e2520fdb6c4a62da2388.
- 12:10 PM Revision 1c082d5b (taxeditor): fix #5924: reauthenticate after changing the password
- 11:49 AM feature request #6076: Specimen biocase search should work on observations
- the search works on all record basis now.
we need to check whether the model covers all types. - 11:37 AM bug #6336 (Resolved): NPE when deleting recently created media
- this is already fixed. see associated revision.
01/30/2017
- 08:50 PM Revision 55dd353b (cdmlib): ref #6362 remove further occurrences of NonViralName
- 05:52 PM bug #6400 (New): Palmweb feature 'Number of Taxa' no longer working
- reported in 'RE: A few problems with EDIT Platform 3.3.3' by Lauren Gardiner (28.04.2014 15:19) :
----
'Number ... - 04:50 PM bug #6374: Uses no longer shown in palmweb portal broken
- was still broken due to #6398
- 04:47 PM bug #6398 (Closed): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
- 03:33 PM bug #6398 (Resolved): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
- Applied in changeset commit:cdmlib|f540b1391e26e2dd6733d19bff2bfb2cfa3c40fa.
- 01:43 PM bug #6398 (Closed): portal/taxon/{uuid}/descriptions.json with markerType-filter returns no data
- The portal web service `portal/taxon/{uuid}/descriptions.json` with `markerType` filter returns no data.
In contrast... - 04:43 PM Revision d3616f2c (cdm-dataportal): ref #6398 adapting dataportal to harmonized description related taxon service endpoints
- 03:53 PM feature request #6367 (In Progress): Make NomenclaturalCode an attribute ("type") of TaxonNameBase
- 03:33 PM Revision f540b139 (cdmlib): fix #6398 messing up and harmonizing description related taxon service endpoints
- 03:33 PM Revision f2f1be49 (cdmlib): removing unused method which was created for palmweb
- 03:27 PM bug #6322: In the specimen editor showing the warning for long loading times already has a long loading time
- Check first on production.
- 02:59 PM bug #6347: Improve layout for navigator sorttype selection
- .. or use dropdown
- 02:53 PM bug #6372 (Resolved): NPE when using ShowView - Datasource
- Applied in changeset commit:taxeditor|a286b342b8d1606be85d96505eb507fe93abe97b.
- 02:53 PM Revision a286b342 (taxeditor): fix #6372 fix NPE in datasource view
- 02:37 PM bug #6389: Returning a Map in cdmlib leads to data loss
- Check if this method is used elsewhere. If not make it deprecated with reason that it currently gives not the expecte...
- 01:52 PM feature request #6399 (Closed): Add admin property frequently used biocase provider
- For a better handling in biocase import we need an admin property which contains the main biocase provider of the pro...
- 01:42 PM Revision e48774bc (taxeditor): ref #6365 use TaxonNameFactory for factory methods in TaxEditor
- 01:28 PM Revision ded3de15 (cdmlib-apps): ref #6365 use TaxonNameFactory for factory methods in cdmlib-app
- 01:12 PM Revision 5d206c8e (cdmlib): ref #6365 use TaxonNameFactory for static parser methods
- 12:09 PM bug #6397 (Closed): palmweb: various feature blocks missing
- 12:03 PM bug #6397 (Resolved): palmweb: various feature blocks missing
- Applied in changeset commit:cdm-dataportal|caab0bd280def9962d6c979e41719ce462c35163.
- 11:33 AM bug #6397: palmweb: various feature blocks missing
- This is a bug which has been introduced while solving #6114 and #4379 commit.
- 10:46 AM bug #6397 (Closed): palmweb: various feature blocks missing
- In the palmweb portal various feature blocks are missing.
At the example of *Calamus aruensis*:
This taxon has ... - 12:03 PM Revision 20541fd4 (cdm-dataportal): Merge tag '4.5.3' into develop
- tag for hotfix release 4.5.3
- 12:02 PM Revision 037cdbf5 (cdm-dataportal): Merge branch 'hotfix/4.5.3'
- 12:02 PM Revision caab0bd2 (cdm-dataportal): fix #6397 ref #4379 fixing empty feature block content detection
- 11:07 AM Revision fe34a9eb (cdmlib): ref #6365 use TaxonNameFactory for botanical names
- 10:56 AM Revision 033fa0b2 (cdmlib): ref #6365 use TaxonNameFactory for zoological names
- 10:55 AM Revision a24ddafd (cdm-dataportal): removing invalid uuid constant
- 10:52 AM task #6360: Move NonViralName functionality to TaxonNameBase
- Applied in changeset commit:cdmlib|df5738fefc6971d38b6cb364accd0b38af6a69d8.
- 10:52 AM Revision df5738fe (cdmlib): fix #6360 use TaxonNameFactory for NonViralNames
- 10:45 AM task #6364 (Resolved): Merge viral names and bacterial names into TaxonNameBase
- Applied in changeset commit:cdmlib|6369aae2b548ac9f046ff2a8e755326226ec7904.
- 10:45 AM Revision 6369aae2 (cdmlib): fix #6364 use TaxonNameFactory for viral and bacterial names
- 10:41 AM task #6366 (Resolved): Merge cultivar names into TaxonNameBase
- Applied in changeset commit:cdmlib|174ae83b06b5d01305560d46a3391c520d471354.
- 10:38 AM Revision 174ae83b (cdmlib): fix #6366 use TaxonNameFactory for cultivar names
- 01:34 AM Revision 6de1d1c3 (taxeditor): ref #6365 ref #6366 ref 6364 Update CdmModelCacher in TaxEditor
- 01:29 AM Revision 42f99e54 (taxeditor): ref #6362 and ref #6365 remove some NVN and Bot/Zoo name occurrences in TaxEditor
- 12:24 AM Revision 396a8759 (cdmlib): ref #6362 remove some further NVN occurrences
- 12:24 AM Revision 6eeff533 (cdmlib): ref #6365 Move zoological parse methods to TaxonNameBase
- 12:24 AM Revision 066f7886 (cdmlib): Remove isCodeCompliant from TaxonNameBase
- 12:24 AM Revision 2d370ced (cdmlib): ref #6366 move cultivar attributes and functions to TaxonNameBase
- 12:24 AM Revision e8b59a14 (cdmlib): cleanup
- 12:24 AM Revision da39aca0 (cdmlib): ref #6365 merge static methods from BotanicaName to TaxonNameBase
- 12:24 AM Revision 0d8c0513 (cdmlib): ref #6365 ref #6360 ref #6364 replace taxon name factory methods
- 12:24 AM Revision 18b50091 (cdmlib): ref #6365 replace ZoologicalName factory methods
- 12:24 AM Revision 5b88f807 (cdmlib): ref #6360 replace NonViralName factory methods
- 12:24 AM Revision 8eea91a5 (cdmlib): ref #6365 Move all ZoologicalName attributes up to TaxonNameBase
- 12:24 AM Revision 536aae8b (cdmlib): ref #6364 Move all BacterialName attributes up to TaxonNameBase
- 12:24 AM Revision 02736ff3 (cdmlib): ref #6364 Move all ViralName attributes up to TaxonNameBase
- 12:24 AM Revision 1ff3286f (cdmlib): minor
01/28/2017
01/27/2017
- 05:29 PM bug #6365: Merge botanical and zoological names into TaxonNameBase
- moving "anamorphic" requires an update script.
- 01:10 AM bug #6365 (In Progress): Merge botanical and zoological names into TaxonNameBase
- 05:09 PM bug #6382 (Closed): option to supply user credentials in the admin setting for the freetext index triggers
- 05:09 PM bug #6393 (Closed): manage/* web service can be used by ajax requests
- 02:12 PM bug #6393 (Resolved): manage/* web service can be used by ajax requests
- Applied in changeset commit:cdmlib|1a5de38db1f2422d9596b1bb6fbba7a130b0c00e.
- 02:08 PM bug #6393 (Closed): manage/* web service can be used by ajax requests
- As of `/manage/*` requiring authentication these services can no longer be used via ajax with cross domain requests. ...
- 05:05 PM feature request #6396 (New): taxontree takes HTTP_REFERER into account to focus on the previously visited taxon page
- The taxon tree should evaluate taxon uuids in the HTTP_REFERER.
This will allow to the taxontree to be open at the... - 04:03 PM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- I just had the same problem:
1. I tried to push but the VPN connection was disconnected.
1. After connecting via ... - 04:02 PM Revision 59cd56c3 (taxeditor): Reverting the last version updates
- 03:55 PM Revision f9379882 (taxeditor): Increase java code level to java 1.8
- 03:32 PM feature request #6390: Details view for misapplied names
- WGB: Habe wg. lat. Formulierung für "missapplied acc. to" eine Anfrage an Greuter geschickt.
- 12:09 PM feature request #6390 (Closed): Details view for misapplied names
- We need a details view for misapplied names to allow editing also information within the concept relationship (most i...
- 03:21 PM feature request #6395: Define a taxon concept relationship for somehow related concepts
- AM: Die Frage wäre nur, wie der Typ genauso definiert und gelabelt sein könnte. Z.B. „deviating concept“? Und im Menu...
- 02:54 PM feature request #6395 (New): Define a taxon concept relationship for somehow related concepts
- These concepts are currently often handled as misapplications which is wrong. For a discussion see #6112.
- 02:52 PM feature request #6394 (New): Allow additional taxon relationships in TaxEditor to be handled similar to misapplications
- Currently users create misapplications when they want to add somehow related but differing concepts. For a discussion...
- 02:12 PM Revision 1a5de38d (cdmlib): fix #6393 enabling manage services to be accessed via ajax with authentication
- 01:07 PM Revision ed925ac3 (taxeditor): Update tycho version from 0.22.0 to 0.26.0
- 12:19 PM task #6392 (Closed): selenium tests for palmweb uses data
- Taxa as test cases:
* Phytelephas macrocarpa Ruiz & Pav.
* many UseDescriptions (UseRecords)
* Calamus aruensis... - 12:18 PM bug #6374: Uses no longer shown in palmweb portal broken
- This went to the hotfix, and should be reviewed. If possible this should be done by Bill since I am not sure if all U...
- 12:00 PM bug #6374: Uses no longer shown in palmweb portal broken
- Can this be closed or should it be reviewed. Is it the correct milestone (went into hotfix?).
- 12:14 PM feature request #6391: Show misapplied name concept relation attributes in data portal
- More or less blocked by #6390 as we do not have data yet. However, it could be implemented already.
- 12:13 PM feature request #6391 (New): Show misapplied name concept relation attributes in data portal
- for more information see #6390
- 12:02 PM bug #6381 (In Progress): Specimen titleCache should include barcode or catalogue number if accession number not exists
- 01:09 AM task #6362 (In Progress): Remove occurrence of NonViralName in code
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