Activity
From 12/27/2016 to 01/25/2017
01/25/2017
- 06:10 PM bug #6382 (Resolved): option to supply user credentials in the admin setting for the freetext index triggers
- Applied in changeset commit:cdmlib|ac32d8ec395f8a22d3c787092f25c54a70ec0b2c.
- 04:40 PM bug #6382 (In Progress): option to supply user credentials in the admin setting for the freetext index triggers
- The modifed URLs in the trigger links do not work. It seems as if the Jquery ajax function in cdmlib-remote-webapp/sr...
- 04:32 PM bug #6373 (Closed): LIE during request to /portal/descriptionElement/byTaxon
- works!
- 02:04 PM bug #6386 (Worksforme): wrong taxeditor develop branch version after taxeditor-HFX-*
- The problem was actually introduced by a manual merge of the develop branch into the hotfix branch commit:taxeditor|c...
- 01:05 PM bug #6386 (Worksforme): wrong taxeditor develop branch version after taxeditor-HFX-*
- After running the taxeditor-HFX-* jobs the version in the develop branch is set to the release version. it should how...
- 12:45 PM bug #6088: New reproducable multiple representations exception for name relationships
- Hallo,
das Problem beim Speichern von Name Relationships ( s.u. "Multiple representations of the same entity") schei... - 12:45 PM bug #6088: New reproducable multiple representations exception for name relationships
- Hallo,
das erste der letzten Mittwoch gemeldeten Probleme habe ich nun auch in einem zweiten Fall, scheint also ni... - 12:42 PM bug #6385: Specimen Editor should handle new search same as bulk editor
- Katja, could you please add the existing similar ticket for the bulk editor as a related ticket?
- 12:41 PM bug #6385 (Closed): Specimen Editor should handle new search same as bulk editor
- For the bulk editors we realised that a new search should trigger a completely new session. Which also includes askin...
- 10:33 AM feature request #6187: [DISCUSS] Ask W.Greuter about "type providing name"
- AM: In anderem Zusammenhang habe ich dich so verstanden, dass es pro homotypische Gruppe immer nur einen type providi...
- 10:32 AM bug #6136: Implement type providing name in homotypical group
- AM: In anderem Zusammenhang habe ich dich so verstanden, dass es pro homotypische Gruppe immer nur einen type providi...
- 10:22 AM task #6384 (Closed): update BGBM logo
- Ach übrigens ist mir gerade aufgefallen, dass im Footer von https://cybertaxonomy.eu/eu-bon/utis/1.2/ immer noch das ...
- 10:19 AM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- After the above modification the cdm-webapp-HFX-FINISH job was running successfully. This could mean that the probelm...
- 10:13 AM bug #6383 (In Progress): fatal error on git push: The remote end hung up unexpectedly
- 10:12 AM bug #6383: fatal error on git push: The remote end hung up unexpectedly
- attempting to ssh into the server as `ssh git@dev.e-taxonomy.eu` raises a error message:
~~~
...
Last login: Fri... - 09:53 AM bug #6383 (Closed): fatal error on git push: The remote end hung up unexpectedly
- This frequently breaks jobs in the release pipeline and always causes the affected job to fail. It also occurs in oth...
01/24/2017
- 03:47 PM bug #6382 (Resolved): option to supply user credentials in the admin setting for the freetext index triggers
- Applied in changeset commit:cdm-dataportal|c9b3fcf51a4ce188734069f350964233b0bd7aee.
- 03:46 PM bug #6382 (Closed): option to supply user credentials in the admin setting for the freetext index triggers
- The credentials must not be stored in the settings
- 02:44 PM bug #6380: typedesignations missing in homotypic group
- >A solution would be to use the existing >`eu.etaxonomy.cdm.persistence.dao.name.IHomotypicalGroupDao.getTypeDesignat...
- 12:47 PM bug #6380 (Closed): typedesignations missing in homotypic group
- This issue seems to occur only in special cases but point out a general problem with the way the typedesignations are...
- 02:35 PM bug #6381 (Closed): Specimen titleCache should include barcode or catalogue number if accession number not exists
- 02:27 PM bug #6376 (Resolved): NPE when deduplicating agent
- Applied in changeset commit:taxeditor|fa70a2efe1035f9f977cc24552dfbe07b8703ab9.
- 09:40 AM bug #6376 (Closed): NPE when deduplicating agent
- Hi,
folgende Fehlermeldung kam eben beim Deduplizieren.
schöne Grüße, Nadja
~~~
login : n.korotkova
editor... - 12:20 PM bug #6379 (Worksforme): specimens of lectotypes not shown in portal
Cichorieae: The Name *Hypochaeris achyrophorus* has a Lectotype with a specimen: Herb. Clifford: 385, Hypochaeris 1...- 10:20 AM bug #6378 (New): Check if PlinianCore is relevant for us
- https://github.com/tdwg/PlinianCore/wiki
Plinian Core - 09:55 AM task #6377 (New): Add DAFOR vocabulary for organismQuantityType
- Dominant-
Abundant-Frequent-Occasional-Rare
====
For abundance you could use organismQuantity in conjunction w... - 09:30 AM bug #6375 (Closed): footnotes on sensu references must not be prefixed with 'sensu'
- Walter wrote:
http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/taxon/c40f3ad5-e921-4d34-b8e4-f7235d3db73e... - 08:49 AM bug #6255 (Resolved): jenkins job cdm-webapp-HFX-FINISH fails due to merge conflict
- I created a new job based on taxeditor-HFX-FINISH, the old one is preserved as *cdm-webapp-HFX-FINISH (BACKUP)* which...
01/23/2017
- 04:37 PM bug #6374 (Closed): Uses no longer shown in palmweb portal broken
*Iriartea deltoidea*:
http://edit.dev/d7/palmae/cdm_dataportal/taxon/ce870eca-0422-4a3c-b849-0f5ca0370b1f- 02:15 PM bug #6373 (Resolved): LIE during request to /portal/descriptionElement/byTaxon
- Applied in changeset commit:cdmlib|be36c37f254cc5d6f7b6297547714fc8121e2017.
- 01:31 PM bug #6373 (Closed): LIE during request to /portal/descriptionElement/byTaxon
- ~~~
Caused by: net.sf.json.JSONException: org.hibernate.LazyInitializationException: failed to lazily initialize a c... - 12:06 PM bug #6296 (Resolved): Simple search for common names returns duplicates
- Applied in changeset commit:cdmlib|177a283a6184b5ca5ab3344042317f1f96db3b31.
- 10:41 AM bug #6296: Simple search for common names returns duplicates
- There are at least two other problems. I extended the according service tests. You will find in the commit:cdmlib|cc9...
- 11:43 AM bug #6372 (Closed): NPE when using ShowView - Datasource
- Hallo,
bei der Suche nach der Update-Einstellung habe ich Window-ShowView-Datasource gewählt und u.a. Fehler bekomme... - 10:46 AM bug #6215 (Closed): NPE when opening preferences with no DB connection
- looks fine
- 10:37 AM bug #6371 (New): Data-Refresh problem when exporting consensus file
- Another current problem related to this discussion in #5722 would be the following use case:
1) Open an existing s...
01/21/2017
- 12:28 PM task #6370 (Rejected): Remaining issues to merge all TaxonNameBase subclasses
- do all remaining tasks which are not handled by a subtask ticket yet.
- 12:19 PM task #6362: Remove occurrence of NonViralName in code
- replace with interface were possible
- 11:53 AM task #6362 (Closed): Remove occurrence of NonViralName in code
- in cdmlib, taxeditor, cdmlib-app, vaadin, ...
- 12:16 PM feature request #6369 (Closed): Create interfaces for TaxonName types
- 12:15 PM feature request #6368 (Closed): Merge all TaxonNameBase classes, remove DTYPE, rename table
- 12:09 PM feature request #6367 (Closed): Make NomenclaturalCode an attribute ("type") of TaxonNameBase
- 12:06 PM task #6366 (Closed): Merge cultivar names into TaxonNameBase
- by moving all functionality up, replacing all occurrences of CultivarName in code, adapting cache strategies and writ...
- 12:02 PM bug #6365 (Closed): Merge botanical and zoological names into TaxonNameBase
- by moving all functionality up, replacing all occurrences of BotanicalName and ZoologicalName in code, adapting cache...
- 11:58 AM task #6364 (Closed): Merge viral names and bacterial names into TaxonNameBase
- by moving all functionality up, replacing all occurrences of ViralName in code, adapting cache strategies and writing...
- 11:56 AM feature request #6363 (Closed): Implement validation rules for all names according to their code
- to fulfill the requirements for the parent ticket #6361.
First implement as Level1 rules. Later we may reduce this. - 11:51 AM task #6360 (Resolved): Move NonViralName functionality to TaxonNameBase
- 11:50 AM task #6360 (New): Move NonViralName functionality to TaxonNameBase
- 11:28 AM task #6360 (Resolved): Move NonViralName functionality to TaxonNameBase
- Applied in changeset commit:cdmlib|7d8c96134bda3c11d053df2e8e5d03f32a500ee3.
- 11:11 AM task #6360 (Closed): Move NonViralName functionality to TaxonNameBase
- To prepare merging of NonViralName and TaxonNameBase
- 11:49 AM feature request #6361 (Closed): [MASTER] Merge all TaxonName classes into 1 class
- This gives more flexibility to change name types and reduces class casting overheads and exceptions. At the same time...
01/20/2017
- 05:07 PM task #2501 (Closed): Remove redundant SDD import class
- 05:06 PM task #2501 (Resolved): Remove redundant SDD import class
- Applied in changeset commit:cdmlib|6a12debb17f56a4b440d71f3f2ce06ad56bb8945.
- 02:32 PM bug #6299: Error when deleting reference in bulk editor
- please have a look if it works now as expected
- 02:30 PM bug #6359 (Closed): Remaining issues secundum for subtrees
- Open issue(s):
* fill UpdateResult correctly => fixed, but preliminary changed due to #9627
* ~~add progress moni... - 02:28 PM bug #6358 (New): feature block ids must not be language dependant
- The feature block ids are build using the label of the according feature type term. When terms are translated the id ...
- 02:27 PM feature request #4246 (Closed): Allow inserting a new node at the beginning or somewhere else in the Polytomous Key tree
- moved the two possiblities of add a node into one menu item
- 02:26 PM bug #6283 (Closed): Exceptions when editing polytomous key
- seems to be fine
- 02:26 PM feature request #4766 (Closed): Repair Methods for the cdm instance
- 01:31 PM feature request #4766 (Feedback): Repair Methods for the cdm instance
- This works fine and is a very nice feature.
Some minor issues:
* Is there a reason why you have implemented the... - 02:25 PM feature request #6357 (New): Repair methods improvement
- follow up issues to #4766
AM:
Is there a reason why you have implemented the CacheUpdater only for 3 classes an... - 02:16 PM bug #6244 (Closed): Sortindex problems in complex operations like swap synonym and accepted and others
- As this is lot of work to test but we did not get any complaints anymore I close without final testing. Also we do ha...
- 02:08 PM bug #6356 (Closed): taxontree sort order as in editor
- The classification browser (taxontree) should be using the same sort order as the taxon navigator in the editor.
... - 02:08 PM bug #6355: Improve message if server is down
- This is NOT a duplicate for related tickets like #6209 but a separate issue.
- 01:53 PM bug #6355 (Duplicate): Improve message if server is down
- If the remote server is down/not started one gets a very long message (see attachement).
The message should be sim... - 02:07 PM feature request #5839: Improve error message when server can't be reached
- Can we close this ticket? If it is a pure duplicate we should (and remove target version).
- 02:06 PM feature request #5839: Improve error message when server can't be reached
- Andreas Müller wrote:
> I don't remember how to invoke this message in the moment. But I have seen it recently and I... - 02:03 PM feature request #5839 (New): Improve error message when server can't be reached
- 02:00 PM feature request #5839 (Closed): Improve error message when server can't be reached
- I don't remember how to invoke this message in the moment. But I have seen it recently and I think we can close this ...
- 02:00 PM bug #6209 (Closed): NPE in DatasourceView
- I don't remember how to invoke this message in the moment. But I have seen it recently and I think we can close this ...
- 01:40 PM bug #6354 (Resolved): Advanced search: non phrase search with wildcard broken
- Applied in changeset commit:cdmlib|d93004c1d8290a60779c3731a33ba3c46b062ec9.
- 01:34 PM bug #6354 (Closed): Advanced search: non phrase search with wildcard broken
- Example search string: `Abi*`
this is a regression introduced by #4223 - 01:29 PM bug #6353 (New): Create progress monitors for imports and other long running tasks
- ... like CacheUpdater or sortindex updater
- 01:02 PM bug #6296 (In Progress): Simple search for common names returns duplicates
- bugs are fixed and tests are added
- 01:01 PM bug #6296 (Resolved): Simple search for common names returns duplicates
- Applied in changeset commit:cdmlib|c4f7a205397788e29a5bb8a00efc87eb41322cab.
- 11:14 AM bug #6296: Simple search for common names returns duplicates
- Another broken search request:
http://api.cybertaxonomy.org/flora_cuba/portal/taxon/find.json?doTaxaByCommonNames=... - 11:58 AM bug #6274 (Closed): add update of childrenCount cache in repair method
- works fine
- 11:47 AM feature request #6352 (Duplicate): Add Transmission Engine trigger to Admin menu
- From the Admin menu we can now trigger sortindex refresh and cache update.
It would be nice to have a functionalit... - 11:01 AM bug #2939 (In Progress): ehcache diskStore conflict?
- 10:59 AM bug #2939: ehcache diskStore conflict?
- latest location of the according documentation: http://www.ehcache.org/generated/2.10.3/html/ehc-all/#page/Ehcache_Do...
- 10:51 AM feature request #4490 (Resolved): Make the label of the taxon page tabs customizable for portal admins
- The menu cache is now refreshed automatically.
- 10:47 AM task #6158 (Feedback): Update EDIT documentation from svn to git
- At most places it is updated. I found some additional issues:
* dataportal: link to SourceRepository is broken
* ... - 10:28 AM feature request #3465 (Closed): Function to copy secundum reference of a given taxon node to all it's children
- looks fine
01/19/2017
- 11:23 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- Andreas Müller wrote:
> ... Also "Other" is not in the expected order.
This is still an open issue, see descripti... - 11:00 PM feature request #4490 (Feedback): Make the label of the taxon page tabs customizable for portal admins
- I switched it on for Campanula and Mexico Rubiaceae.
Worked for Rubiaceae after a couple of refreshs. For Campanul... - 06:04 PM bug #6349 (Resolved): Fix media description handling
- Applied in changeset commit:cdm-dataportal|09e628ea8e2c8c2dac8e2b9d6e7d532b1974e020.
- 04:29 PM bug #6349 (Closed): Fix media description handling
- Since version 4.5 Media.description is shown in image galleries and on media pages.
Problem: a separator is missing ... - 05:30 PM bug #6248 (Closed): allow machine clients to access /manage/* OAuth2 protected web services
- This perfectly works, the `managing-users.properties` are all edited so that they have an according user.
- 05:28 PM feature request #6351 (Closed): jenkins cdmserver-index-job.groovy supports http basic authentication
- the [cdmserver-index-job.groovy](http://160.45.63.176/jenkins/scriptler/editScript?id=cdmserver-index-job.groovy) nee...
- 04:55 PM bug #6259 (Closed): Media page problems with multiple media representations
- Seems to be fixed. Maybe we can improve the layout one day.
- 04:51 PM bug #6350 (New): Advanced search areas show empty brackets if idInVocabulary is not given
- e.g. for Salvador areas
- 04:49 PM bug #6260 (Closed): media page: rights stored in the cdm are not displayed
- fixed
- 04:48 PM feature request #6301 (Closed): Display of sources for images
- Given that there is the follow up ticket this ticket can be closed.
- 04:12 PM feature request #6288 (Closed): harmonize CommonName feature block elements
- 04:07 PM bug #2957 (Closed): running maven site:site for Taxonomic Editor fails
- 04:01 PM feature request #6278 (Closed): add sec reference as class attribute to all taxon markup
- 03:47 PM bug #4223 (Closed): Advanced search returns unexpected results
- 03:46 PM bug #6323 (Closed): LIE during request to name_catalogue/taxon.json
- 03:43 PM bug #6317 (Closed): LIE during request to portal/taxon/find.json
- 03:42 PM bug #6268 (Closed): descriptions missing in media service responses
- 03:42 PM bug #6261 (Closed): NPE while processing /portal/media/{uuid}/sources in BaseController
- 03:39 PM feature request #6249 (Closed): better logging strategy
- 03:33 PM bug #6227 (Closed): LIE during request to derivedUnitFacade/{uuid}/collectingareas
- 03:29 PM bug #4377 (Closed): LazyInitializationException (LIE) related to Team.teamMembers when calling portal/taxon.json
- 03:28 PM bug #6296 (In Progress): Simple search for common names returns duplicates
- This works now in general but searching only for common names causes an exception:
http://api.cybertaxonomy.org/sa... - 02:16 PM bug #6186 (Worksforme): Drupal nodes are created even if Create drupal nodes is off
- 01:37 PM bug #6342 (Closed): Exception when searching for '?' in TaxonNodeSelectionDialog
- works fine now
- 10:35 AM bug #6342 (Resolved): Exception when searching for '?' in TaxonNodeSelectionDialog
- Applied in changeset commit:cdmlib|3d654cd328d3f29666636bf5fec391629be47123.
- 12:57 PM bug #6347 (Closed): Improve layout for navigator sorttype selection
- In the preferences for taxon navigator we have sorting as one issue.
We should try to group this with a header "So... - 10:44 AM feature request #6346 (New): Implement filtering and sorting for specimen table in dataportal
- 10:26 AM bug #6345 (New): Zooming with mouse wheel resets manually adjusted size of areas in AlignmentEditor
- 1. Change the size of the different areas (single read, consensus, multi-read)
1. Zoom with CTRL+mouse wheel
1. Siz... - 08:46 AM feature request #6344 (New): Restrict UI for editing molecular data
- After a testing session with Norbert we decided to use a very restrictive UI to avoid any synchronization problems. T...
- 08:28 AM bug #4821: Changing order of terms not possible
- Yes, please review.
01/18/2017
- 11:47 PM bug #6343 (In Progress): TermVocabularies of OrderedTerms must be OrderedVocabularies
- 11:46 PM bug #6343 (In Progress): TermVocabularies of OrderedTerms must be OrderedVocabularies
- Updatescript for TermVocabularies of OrderedTerms which are not OrderedVocabularies.
See also https://dev.e-taxono... - 11:43 PM bug #4821: Changing order of terms not possible
- Should I review or are there still open aspects?
- 11:39 PM feature request #5474: TermEditor menu should be more structured
- Please also add a separator above "Others"
- 11:38 PM feature request #5474 (Feedback): TermEditor menu should be more structured
- Please use i18n (translations for term types themselves will also be offered soon, there is a ticket). Be aware that ...
- 11:29 PM feature request #6314: CDM light (csv) export implemented
- Katja: Ich habe diese und die vorherige Version auch nochmal unter Y:\BDI\EDIT-Plattform\_Latest Versions\Output Mode...
- 11:03 PM bug #6042: Campanula portal TODOS
- Can you please adapt (or remove) target version. 4.5 does not seem to be correct.
- 06:14 PM bug #6042 (Closed): Campanula portal TODOS
- 06:15 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bulk editor
- Currently we have a warning if more than 500(?) objects are going to be loaded into an bulk editor. Instead we should...
- 05:59 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- Andreas Müller wrote:
> Have you checked if we can reuse / combine the Comparator developed for #3185?
The other co... - 04:23 PM bug #6283: Exceptions when editing polytomous key
- I am not really sure what to test here because I do not know how to reproduce the problem. I clicked around and added...
- 04:21 PM bug #6342 (Closed): Exception when searching for '?' in TaxonNodeSelectionDialog
- 1. In Navigator right-click on a taxon
1. Choose "Move Taxon (with children)"
1. Search for all taxon nodes with '?... - 09:45 AM feature request #5365 (Feedback): Add delete configurator to Media View image gallery
- When trying to delete an unsaved, recently created image from an image gallery I get an NPE
~~~
login : admin
ed... - 09:39 AM bug #6334 (Closed): Deleting unsaved TaxonDescription does not work
- works fine
- 09:32 AM bug #6333 (Resolved): Add existing media to a taxon description is not persisted
- I removed the option to change an existing media element in the DetailsView. Instead we should add the option to add ...
- 12:32 AM feature request #5922 (Closed): Change order in supplemental data view
- 12:27 AM bug #6341 (New): Show botanical nomenclatural status types not for zoological names
- This is a bit more difficult than #5488 as we first need to figure out which botanical status are purely botanical an...
- 12:23 AM bug #6340 (Closed): Update script for nomenclatural status types
- Until #5488 was solved it was possible to add a zoological nom status to a botanical name in TaxEditor.
Especially f... - 12:08 AM bug #6307 (Closed): Logfile/exception dialog should show connected datasource
- Looks fine now
01/17/2017
- 11:55 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- Have you checked if we can reuse / combine the Comparator developed for #3185?
- 11:52 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
- ... Also "Other" is not in the expected order.
- 11:51 PM feature request #5714 (Feedback): In Original Source Type dropdown show Primary Taxonomic Source first
- Only Primary Taxonomic Source is on top, but Primary Media Source is not yet second and also no alphabetic ordering o...
- 05:38 PM bug #6339 (Closed): frontendBaseUrl parameter not longer working in web services
- 05:21 PM bug #6339 (Resolved): frontendBaseUrl parameter not longer working in web services
- Applied in changeset commit:cdmlib|fcfd1e30ae194d17b3be1bae4b5f09dcbb52eaa0.
- 05:19 PM bug #6339 (In Progress): frontendBaseUrl parameter not longer working in web services
- 04:27 PM bug #6339 (Closed): frontendBaseUrl parameter not longer working in web services
- see #6338 General notes
- 03:28 PM feature request #6337 (Rejected): simple web ui to trigger the transmission engine distribution
- in case #6352 is implemented this issue becomes obsolete
- 02:50 PM bug #6209 (Resolved): NPE in DatasourceView
- 01:00 PM bug #6209: NPE in DatasourceView
- The message is changed and a new ticket for the email of the admin is created (#6335).
- 02:07 PM bug #6336 (Closed): NPE when deleting recently created media
- 1. Create new image gallery for a taxon
1. Directly delete the image -> NPE
~~~
!ENTRY eu.etaxonomy.taxeditor.ed... - 01:29 PM bug #6333 (In Progress): Add existing media to a taxon description is not persisted
- 10:28 AM bug #6333 (Closed): Add existing media to a taxon description is not persisted
- When adding an existing media to a taxon the description shows up correctly, but after changing the view and come bac...
- 01:00 PM feature request #6335 (New): Providing the admin email for each server installation
- For some issues the edit support is not responsible for the error messages but the server admin of an instance. There...
- 12:51 PM feature request #4766 (Resolved): Repair Methods for the cdm instance
- I added the sortIndex Updater and the cache updater. Please have a look, if everything works or any suggestions for i...
- 12:44 PM bug #6283 (Resolved): Exceptions when editing polytomous key
- 12:44 PM bug #6283: Exceptions when editing polytomous key
- I test it again and it works now. Please test, if there are NPE when editing the key.
- 11:56 AM bug #6334 (Resolved): Deleting unsaved TaxonDescription does not work
- Applied in changeset commit:taxeditor|1f9fcd90f5cd65d1d848ddeb93531e55dc6b100f.
- 11:03 AM bug #6334 (Closed): Deleting unsaved TaxonDescription does not work
- 1. Create new TaxonDescription in FactualData view
1. Delete that TaxonDescription
1. TaxonDescription is still the... - 11:25 AM bug #6248 (Resolved): allow machine clients to access /manage/* OAuth2 protected web services
- Applied in changeset commit:cdmlib|c05f3fc567c3839ded9d89c6c0f81834fe11e1d2.
- 11:09 AM bug #6248: allow machine clients to access /manage/* OAuth2 protected web services
- oauth2 with grant type 'client' is not really needed. It would require that the client can authenticate with username...
- 11:12 AM bug #6281: delete synonym with annotations throws exception
- same problem, when the synonym has original sources.
~~~ text
login : W.Greuter
editor version : 4.4.1
server :... - 11:00 AM feature request #5365 (Resolved): Add delete configurator to Media View image gallery
- Applied in changeset commit:taxeditor|d747b2b97eb8df327a6096e37a9b644cbd950295.
01/16/2017
- 11:14 AM feature request #6332 (New): cdm-dataportal as oauth2 client of cdm-remote instances
- The drupal modules providing oauth2 client functionality:
* [oauth2_client](https://www.drupal.org/project/oauth2_... - 10:08 AM feature request #5365: Add delete configurator to Media View image gallery
- Sorry, I added the delete configuration only to the bulk editor. Will add it to the media galery as well,
01/14/2017
01/13/2017
- 05:19 PM bug #6331 (New): Inserting gaps in the AlignmentEditor using the space key does not work anymore
- See https://secure.bioinfweb.info/Bugs/Bugzilla/show_bug.cgi?id=153
Workaround: Use the '-' key instead. - 02:05 PM feature request #5365: Add delete configurator to Media View image gallery
- There is no popup at all when I delete an image from an image gallery. I tried it with an image attached to a taxon i...
- 01:27 PM bug #2957 (Resolved): running maven site:site for Taxonomic Editor fails
- 01:23 PM bug #2957: running maven site:site for Taxonomic Editor fails
- Andreas Kohlbecker wrote:
> As far as i can see there is no other information from subprojects that needs to be incl... - 11:19 AM bug #2957: running maven site:site for Taxonomic Editor fails
- As far as i can see there is no other information from subprojects that needs to be included into the site doc.
Add... - 10:28 AM bug #2957 (Feedback): running maven site:site for Taxonomic Editor fails
- On my local machine I tried running `mvn site:site` which at first crashed. Then I tried `mvn install` first and then...
- 01:15 PM feature request #5055 (Closed): Integrate Luna installation instruction into standard installation instructions
- This has been resolved by fixing #6158
- 12:07 PM task #6158 (Resolved): Update EDIT documentation from svn to git
- 10:38 AM task #6158 (Feedback): Update EDIT documentation from svn to git
- 10:37 AM task #6158 (Resolved): Update EDIT documentation from svn to git
- Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > I updated the documentation of taxeditor and cdmlib (change... - 10:26 AM task #6158 (Feedback): Update EDIT documentation from svn to git
- 09:46 AM task #6158: Update EDIT documentation from svn to git
- Patrick Plitzner wrote:
> I updated the documentation of taxeditor and cdmlib (changed only the repository informati... - 09:29 AM task #6158: Update EDIT documentation from svn to git
- I updated the documentation of taxeditor and cdmlib (changed only the repository information from svn to git here).
... - 09:21 AM task #6158 (Resolved): Update EDIT documentation from svn to git
- Applied in changeset commit:taxeditor|8e2a3b6327166e1cd821a6dbeb9df2e2a27f4988.
- 11:18 AM bug #4223: Advanced search returns unexpected results
- Works for me in the Corvids test portal now.
- 11:10 AM bug #4223: Advanced search returns unexpected results
- this issue is fully solved now, please do the review asap.
- 10:25 AM bug #4223 (Resolved): Advanced search returns unexpected results
- Applied in changeset commit:cdmlib|5c69d02f232481e02f850bfd10404566a8373e5b.
01/12/2017
- 11:59 PM feature request #5922: Change order in supplemental data view
- Extensions still could be moved down (taxeditor|55409937). Markers we can leave were they are for now as this is more...
- 11:49 PM bug #5698 (Closed): Ampersand (&) is not shown in labels for NameRelationships in details view
- seems to work
- 10:31 PM bug #4223: Advanced search returns unexpected results
- Andreas Kohlbecker wrote:
> Here we are facing two problems:
>
> 1. The portal does not allow to do a phrase sear... - 06:50 PM bug #4223: Advanced search returns unexpected results
- The `ComplexPhraseQueryParser` is still available in the our current lucene version, so we could give this one a try.
- 06:27 PM bug #4223: Advanced search returns unexpected results
- Here we are facing two problems:
1. The portal does not allow to do a phrase search with a query string like `"Gar... - 05:58 PM bug #6227 (Resolved): LIE during request to derivedUnitFacade/{uuid}/collectingareas
- Applied in changeset commit:cdmlib|5f3efd0eb42e522ee613872715c821753a1d6004.
- 05:44 PM feature request #6301: Display of sources for images
- please do the review
- 01:50 PM feature request #6301 (Resolved): Display of sources for images
- Applied in changeset commit:cdm-dataportal|0c2b9b9d85abf12805482981dde310fa1b6c1b45.
- 05:18 PM feature request #6327: Providing the admin email for each server instance somehow
- Andreas Müller wrote:
> Do we have an idea who the admin actually is?
> Is it the user "admin" with email stored (o... - 04:53 PM feature request #6327: Providing the admin email for each server instance somehow
- Do we have an idea who the admin actually is?
Is it the user "admin" with email stored (or not) in the CDM?
Or is... - 03:30 PM feature request #6327 (Duplicate): Providing the admin email for each server instance somehow
- sometimes it is useful to give contact informations of the server admin to the user, therefore we need this informati...
- 05:15 PM bug #6329: improve display of media sources and annotations
- Andreas Müller wrote:
> I don't understand why the captions are relevant here sources and annotations are not depend... - 04:49 PM bug #6329: improve display of media sources and annotations
- I don't understand why the captions are relevant here sources and annotations are not dependent on the captions and t...
- 04:29 PM bug #6329: improve display of media sources and annotations
- The sources and annotations are displayed differently in the image gallery and media page.
#### A. Gallery
1. S... - 04:21 PM bug #6329 (New): improve display of media sources and annotations
- follow up of #6301
The sources and annotations are displayed differently in the image gallery and media page.
#... - 04:50 PM feature request #5671 (Resolved): Name selection should not allow self referencing name relationships
- Applied in changeset commit:taxeditor|c1c83a38d07bdc4286ce7abb8b30789d0c32e637.
- 04:44 PM feature request #5365 (Resolved): Add delete configurator to Media View image gallery
- 02:46 PM feature request #5365: Add delete configurator to Media View image gallery
- This works now. Please have a look. I have to find the changeset...
- 04:28 PM bug #6330 (Closed): Defined sort order for Mediarepresentations
- If multiple MediaRepresentations are available for one Media the order is arbitrary as it has set semantics.
This ... - 04:12 PM bug #6328 (New): Warn about available text in other languages if multi-language support is disabled
- If multi language support is disabled a Media.description is not shown if it is defined in another language than the ...
- 11:28 AM bug #6326: Login from taxeditor not possible after logging out of vaadin distribution editor
- Andreas Kohlbecker wrote:
> A problem in the session handling? Maybe solved when #5285 is completed?
>
> Are ther... - 10:50 AM bug #6326: Login from taxeditor not possible after logging out of vaadin distribution editor
- A problem in the session handling? Maybe solved when #5285 is completed?
Are there any observable abnormality in t... - 10:01 AM bug #6326 (Worksforme): Login from taxeditor not possible after logging out of vaadin distribution editor
- I tested this with flora cuba on the test server (http://test.e-taxonomy.eu/cdmserver/flora_cuba/app/distribution)
...
01/11/2017
- 02:24 PM bug #6325 (New): Handling of specimen imported via biocase with missing nomenclatural code
- for ABCD import the parsing and assignement to an existing name works fine if the identification contains the nomenc...
- 02:14 PM bug #4377 (Resolved): LazyInitializationException (LIE) related to Team.teamMembers when calling portal/taxon.json
- Applied in changeset commit:cdmlib|8e6fba800484afd4d9570c39f630b47e49579624.
- 01:50 PM feature request #6076: Specimen biocase search should work on observations
- The specimen search works now on all types of specimen. Find the commit.
- 12:44 PM bug #6323 (Resolved): LIE during request to name_catalogue/taxon.json
- Applied in changeset commit:cdmlib|04a88dbc1f00111e4cb3dfee0b1d940dffdb5bf6.
- 12:09 PM bug #6323: LIE during request to name_catalogue/taxon.json
- This bug has been caused by the changes applied through #5974
- 09:45 AM bug #6323 (Closed): LIE during request to name_catalogue/taxon.json
http://api.cybertaxonomy.org/col/name_catalogue/taxon.json?taxonUuid=19338fc3-dbd5-4bda-8cb3-8da76151f8c4
~~~
C...- 12:12 PM bug #6324 (Closed): fix dozer mapping after removal of synonym relations and after using TaxonNode
- the the dozer mapping file `/cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/tdwg/mappings-deep.xml` a p...
- 11:43 AM bug #6151: implement pager for search service
- Hi Andreas,
We have now implemented this, and (on top) added a REST service.
http://www.eu-nomen.eu/portal/webser...
01/10/2017
- 04:19 PM bug #6322 (Closed): In the specimen editor showing the warning for long loading times already has a long loading time
- I tried this on the campanula test DB when searching for 'Ar*'
- 03:06 PM bug #6307 (Resolved): Logfile/exception dialog should show connected datasource
- Applied in changeset commit:taxeditor|5b6653af71b7c1d3ae3998057cf3fa7502a76a58.
- 01:46 PM bug #6307 (In Progress): Logfile/exception dialog should show connected datasource
- 01:58 PM feature request #4246 (Resolved): Allow inserting a new node at the beginning or somewhere else in the Polytomous Key tree
- Applied in changeset commit:taxeditor|40bd7837ec825e5caa98e20ae64592eab98c71c1.
- 01:13 PM feature request #6321 (Closed): Implement parallel loading + progress bar for loading objects into the bulk editor
- 11:52 AM bug #4377: LazyInitializationException (LIE) related to Team.teamMembers when calling portal/taxon.json
- Potentially a duplicate of #6317
- 11:40 AM bug #6319 (New): change background color if changing focus from name editor to another view
- Hallo,
grundsätzlich ist das nicht völlig falsch, da der Fokus dieses Fensters ja weiterhin auf der entsprechenden... - 10:33 AM bug #6244: Sortindex problems in complex operations like swap synonym and accepted and others
- This was part of the bugfix release as far as I remember
- 09:42 AM bug #6296 (Resolved): Simple search for common names returns duplicates
01/09/2017
- 11:11 PM feature request #3465: Function to copy secundum reference of a given taxon node to all it's children
- Applied in changeset commit:cdmlib|06bf3273fe5580bb9201cb85fe829a18885a6942.
- 06:03 PM bug #6318 (Closed): Truncate TextData in FactualData View
- Walter:
Hallo Andreas,
wir sind jetzt der Sache mit den angeblich verstümmelten Editorial Notes und Notes auf di... - 04:11 PM bug #6317 (Resolved): LIE during request to portal/taxon/find.json
- Applied in changeset commit:cdmlib|79902c85abf9675dbc9838a71327de7a54b53dd4.
- 12:31 PM bug #6317 (Closed): LIE during request to portal/taxon/find.json
http://api.cybertaxonomy.org/salvador/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1...- 03:29 PM bug #6296 (In Progress): Simple search for common names returns duplicates
- With the test case mentioned in #6317 an exception is thrown:
~~~
2017-01-09 15:26:32.283:WARN:oejs.ServletHandle... - 03:12 PM bug #6296 (Resolved): Simple search for common names returns duplicates
- Applied in changeset commit:cdmlib|8311a989da231228857d6330f10d14286e93e6fe.
- 02:32 PM bug #6296: Simple search for common names returns duplicates
- The commonNameSearch is now integrated into the taxa and synonym search query.
- 09:34 AM bug #6296: Simple search for common names returns duplicates
- The method in question is
~~~java
Pager<IdentifiableEntity> eu.etaxonomy.cdm.api.service.TaxonServiceImpl.findT... - 11:36 AM feature request #6316: display source references of media objects in media page
- In the media page the display of sources is missing.
- 11:34 AM feature request #6316 (Closed): display source references of media objects in media page
- * The sources should be an ordinary attribute here, not integrated in any footnote or annotation framework
* Conside...
01/07/2017
- 12:17 AM feature request #6315 (Closed): Implement setSecundumForSubtree in TaxEditor
- The functionality has been implemented in #3465
It needs to be called via taxon navigator right click menu. A conf... - 12:06 AM feature request #3465 (Resolved): Function to copy secundum reference of a given taxon node to all it's children
- Applied in changeset commit:cdmlib|d97ab2bfb82c496c37bbb0d7f9b45aae078288be.
01/06/2017
- 02:38 PM feature request #5714 (Resolved): In Original Source Type dropdown show Primary Taxonomic Source first
- Applied in changeset commit:taxeditor|0c7c9656704a352a2bdfea434d6b703245177c65.
- 02:22 PM feature request #6203: Implement unplaced and excluded in dataportal
- In the navigator of the editor the nodes are loaded step by step. Therefore it is difficult to move all excluded and ...
- 01:11 PM feature request #6314 (Closed): CDM light (csv) export implemented
- (Editorial Workflow in Platform-Projekten)
Hallo Katja,
wie gesagt, bevor wir ernsthaft anfangen, mit mehreren Le... - 12:56 PM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigation - 2
- Andreas Müller wrote:
> 3) too wide child boxes:
>
> seems to work now. On mobile it shows only 3 columns and the... - 11:21 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigation - 2
- 3) too wide child boxes:
seems to work now. On mobile it shows only 3 columns and they can be scolled, though it i... - 11:06 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigation - 2
- A new issue (maybe existed before but I did not realize): if trying to move the scrollbar by pressing the mouse butto...
- 11:00 AM feature request #5956 (Feedback): Improve functionality and UX for (children display in) breadcrumb navigation - 2
- mobile devices:
on my Samsung S5 I still have a couple of problems
* when trying to click on the last symbol (... - 10:31 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigation - 2
- Andreas Kohlbecker wrote:
> all issues solved except the transparency which needs to be discussed.
>
> I am not... - 11:59 AM bug #6300: DataIntegrityViolationException when saving a type
- das war wohl etwas zu kurz:
Ich habe bei der Type Designation nach der Specimen Suche und „New“ im Formular „Genera... - 11:58 AM feature request #5474 (Closed): TermEditor menu should be more structured
- looks good.
- 11:08 AM feature request #5474 (Resolved): TermEditor menu should be more structured
- Applied in changeset commit:taxeditor|60e722d086b2b60ceda788e4b1ef85fbe01d13e7.
- 11:54 AM bug #6296: Simple search for common names returns duplicates
- tested findByEverythingFullText(), but this works fine also with more than one common name starting with the same wor...
- 09:24 AM bug #6296: Simple search for common names returns duplicates
- This is a problem in the lucene search, if a taxon has two common names starting with "amate" the lucene search retur...
- 11:42 AM bug #6115 (Feedback): protect cdm content by drupal permission
- Seems to work, so we can close this ticket.
Only issue is that it is difficult to use so I wonder if we can't have... - 10:29 AM feature request #6313 (New): Improve browser functionality of breadcrumbs
- Copied from #5852
An other issue to become a full replacement of the classification tree is, that browsing is more... - 10:24 AM feature request #6312 (New): [DISCUSS] Remove transparency from breadcrumps
- copied from #5852: remove transparency: the transparency makes it more difficult to read the list. But we need a way ...
- 10:10 AM feature request #2985: Improve Specimen details display
- I created some test data at http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_dataportal/taxon/066e04d3-b586-4d...
- 10:09 AM feature request #2985 (Feedback): Improve Specimen details display
- 1) works well
2a) works well in terms of area level being shown, but I wonder if the new Named Area page could not b... - 08:59 AM bug #5698: Ampersand (&) is not shown in labels for NameRelationships in details view
- Fixed this issue and also had a look at other labels. The fix was done generically in the LabelElement class so this ...
- 08:56 AM bug #5698 (Resolved): Ampersand (&) is not shown in labels for NameRelationships in details view
- Applied in changeset commit:taxeditor|4f22ac1d4e12311b019edf2f6c74337f7b4e243c.
- 08:41 AM feature request #5922: Change order in supplemental data view
- I moved both sections to the bottom. The other solution is a bit more work and maybe not that necessary so I left it out
- 08:40 AM feature request #5922 (Resolved): Change order in supplemental data view
- Applied in changeset commit:taxeditor|ac2d218afe325b190be79a6a8e3fb145bd3cb241.
01/05/2017
- 03:35 PM feature request #3465 (In Progress): Function to copy secundum reference of a given taxon node to all it's children
- This is probably a duplicate.
- 03:24 PM task #4232: Check all Comparators for fulfilling the Comparator contract
- Please report results of current effort and maybe check for new Comparators
- 03:23 PM task #4232: Check all Comparators for fulfilling the Comparator contract
- moved IdentifiableEntity.compareTo issue to new ticket #6311
- 03:22 PM bug #6311 (Rejected): Refactor IdentifiableEntity.compareTo method
- The IdentifiableEntity.compareTo method needs to be updated.
First of all I added the test of equality of the uuid... - 03:16 PM feature request #4570: Add vocabulary for Specimen Description Features
- There might be a duplicate.
This issue will be discussed in the Additivity project. - 02:56 PM bug #6300: DataIntegrityViolationException when saving a type
- Maybe we can merge this ticket with a master ticket for duplicate entry issues.
- 02:54 PM feature request #6305: [MASTER] Improve EDITOR import/export UI configuration panel for all imports/exports
- we should create subtickets for each import
- 01:52 PM feature request #5839: Improve error message when server can't be reached
- Probably duplicate for #6209
- 01:28 PM feature request #6270: Feature Description, customized order, granular references
- This is a complex issue with different solutions like IntextRefereces (#4719) (implemented in model but not in TaxEdi...
- 01:01 PM feature request #6310 (New): second search block
- Provide a second Search block, identical to the first one
> Die Konfiguration des Suchblocks müsste dann natürlic... - 10:45 AM task #5285: Use Vaadin Spring Add-on
- UPDATE:
Vaadin, the polyglot framework for building web apps with UI components, released version 1.1 of their Vaa... - 10:29 AM bug #4945 (Feedback): Right click menu for polytomous key node list view needs correct enabling
- 10:26 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
- Andreas Müller wrote:
> I tried to delete an in-between node answering the dialog if children should be deleted by "... - 10:22 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
- I tried to delete an in-between node answering the dialog if children should be deleted by "NO". This resulted in an ...
- 10:20 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
- Some issues:
* Refresh nodes is disabled if no selection, however, it probably always refreshes all nodes of the ke... - 10:28 AM feature request #5841 (Closed): Creating a new alternative in PolytomousKey Editor should set focus to new PKNode
- Seems to work fine
- 12:11 AM bug #6209 (Feedback): NPE in DatasourceView
- The error message is much better now. However, "Problem accessing remote server" is a very short message. We could ma...
01/04/2017
- 11:49 PM feature request #6050: provide the possibility to choose the fields of the simple details view for names
- Additionally there are layout and labeling issues
* No German translation
* (maybe functional) If "Show only a ... - 11:36 PM feature request #6050 (Feedback): provide the possibility to choose the fields of the simple details view for names
- There are some functional issues:
* "Show appended phrase" can not be switched on
* "Show name relationship sec... - 04:06 PM bug #6218 (Closed): NPE when editing term vocabulary label
- Seems to be fixed
- 03:09 PM bug #4821: Changing order of terms not possible
- Applied in changeset commit:taxeditor|9e5501988b4b49f56da62957d3d29c6c6e9478ad.
- 10:11 AM bug #4821: Changing order of terms not possible
- This is because the new created vocabulary is not of the type OrderedTermVocabulary.
- 02:34 PM bug #6309 (Closed): Creating an existing user throws exception
- When creating a user with a username that does already exist throws an "unexpected error".
Instead an expected err...
01/03/2017
- 09:39 PM feature request #6308 (Closed): Add configuration dialog for the deletion of synonyms in name editor
- for the deletion of synonyms we also need a configuration dialog, similar to the deletion of taxa.
- 03:23 PM bug #6307 (Closed): Logfile/exception dialog should show connected datasource
- Currently it shows information like
~~~
login : ki
editor version : 4.3.0
server : api.cybertaxonomy.org / cybe... - 11:06 AM feature request #3573 (Closed): Improve EDITOR import UI configuration panel
- 10:39 AM feature request #3573: Improve EDITOR import UI configuration panel
- We should do this for all types of imports. Close this ticket and create a new one for the other imports, see #6305
- 10:55 AM bug #6304 (In Progress): Deleting of Person used as user does not work
- The isDeletable Method needs to be called.
- 10:38 AM feature request #6305 (New): [MASTER] Improve EDITOR import/export UI configuration panel for all imports/exports
- see #3573
Master ticket for subtickets - 10:27 AM bug #4461 (Closed): Ordering in datasources view fails
- works fine.
- 10:14 AM feature request #5971 (Closed): Implement database wide CdmPreference writing
- this works now.
- 09:58 AM bug #6299 (Resolved): Error when deleting reference in bulk editor
- Applied in changeset commit:cdmlib|82bf3f79c95b9d641ebd2528ca32c98a804c7019.
- 09:51 AM bug #6299: Error when deleting reference in bulk editor
- This problem could be solved by catching the hibernate exception when there is no currentSession and create a new ses...
- 09:37 AM bug #6299: Error when deleting reference in bulk editor
- I could reproduce the exception, following message is shown:
Could not obtain transaction-synchronized Session for...
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