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From 12/22/2016 to 01/20/2017

01/20/2017

08:01 PM Revision 0a706e80 (cdm-dataportal): solving scrollTo problems in taxontree
Andreas Kohlbecker
05:07 PM task #2501 (Closed): Remove redundant SDD import class
Andreas Müller
05:06 PM task #2501 (Resolved): Remove redundant SDD import class
Applied in changeset commit:cdmlib|6a12debb17f56a4b440d71f3f2ce06ad56bb8945. Andreas Müller
05:06 PM Revision 6a12debb (cdmlib): fix #2501 remove redundant SDD import class
Andreas Müller
05:04 PM Revision 69222e4e (cdmlib): minor
Andreas Müller
02:32 PM bug #6299: Error when deleting reference in bulk editor
please have a look if it works now as expected Katja Luther
02:30 PM bug #6359 (New): Remaining issues secundum for subtrees
Open issue(s):
* fill UpdateResult correctly
* add progress monitor
* handle large subtrees in partitions
Andreas Müller
02:28 PM bug #6358 (New): feature block ids must not be language dependant
The feature block ids are build using the label of the according feature type term. When terms are translated the id ... Andreas Kohlbecker
02:27 PM feature request #4246 (Closed): Allow inserting a new node at the beginning or somewhere else in ...
moved the two possiblities of add a node into one menu item Katja Luther
02:26 PM bug #6283 (Closed): Exceptions when editing polytomous key
seems to be fine Katja Luther
02:26 PM feature request #4766 (Closed): Repair Methods for the cdm instance
Katja Luther
01:31 PM feature request #4766 (Feedback): Repair Methods for the cdm instance
This works fine and is a very nice feature.
Some minor issues:
* Is there a reason why you have implemented the...
Andreas Müller
02:25 PM feature request #6357 (New): Repair methods improvement
follow up issues to #4766
Is there a reason why you have implemented the CacheUpdater only for 3 classes and n...
Katja Luther
02:16 PM bug #6244 (Closed): Sortindex problems in complex operations like swap synonym and accepted and o...
As this is lot of work to test but we did not get any complaints anymore I close without final testing. Also we do ha... Andreas Müller
02:08 PM bug #6356 (New): taxontree sort order as in editor
The classification browser (taxontree) should be using the same sort order as the taxon navigator in the editor.
...
Andreas Kohlbecker
02:08 PM bug #6355: Improve message if server is down
This is NOT a duplicate for related tickets like #6209 but a separate issue. Andreas Müller
01:53 PM bug #6355 (Duplicate): Improve message if server is down
If the remote server is down/not started one gets a very long message (see attachement).
The message should be sim...
Andreas Müller
02:07 PM feature request #5839: Improve error message when server can't be reached
Can we close this ticket? If it is a pure duplicate we should (and remove target version). Andreas Müller
02:06 PM feature request #5839: Improve error message when server can't be reached
Andreas Müller wrote:
> I don't remember how to invoke this message in the moment. But I have seen it recently and I...
Andreas Müller
02:03 PM feature request #5839 (New): Improve error message when server can't be reached
Andreas Müller
02:00 PM feature request #5839 (Closed): Improve error message when server can't be reached
I don't remember how to invoke this message in the moment. But I have seen it recently and I think we can close this ... Andreas Müller
02:00 PM bug #6209 (Closed): NPE in DatasourceView
I don't remember how to invoke this message in the moment. But I have seen it recently and I think we can close this ... Andreas Müller
01:46 PM Revision 088873e9 (cdmlib): ref #6354 additinonal test for non phrase queries
Andreas Kohlbecker
01:40 PM bug #6354 (Resolved): Advanced search: non phrase search with wildcard broken
Applied in changeset commit:cdmlib|d93004c1d8290a60779c3731a33ba3c46b062ec9. Andreas Kohlbecker
01:34 PM bug #6354 (Closed): Advanced search: non phrase search with wildcard broken
Example search string: `Abi*`
this is a regression introduced by #4223
Andreas Kohlbecker
01:40 PM Revision d93004c1 (cdmlib): fix #6354 non phrase search with wildcard using the standart QueryParser
Andreas Kohlbecker
01:29 PM bug #6353 (New): Create progress monitors for imports and other long running tasks
... like CacheUpdater or sortindex updater Andreas Müller
01:16 PM Revision fde0f33a (taxeditor): LibrAlign dependency version updated.
Ben Stöver
01:02 PM bug #6296 (In Progress): Simple search for common names returns duplicates
bugs are fixed and tests are added Katja Luther
01:01 PM bug #6296 (Resolved): Simple search for common names returns duplicates
Applied in changeset commit:cdmlib|c4f7a205397788e29a5bb8a00efc87eb41322cab. Katja Luther
11:14 AM bug #6296: Simple search for common names returns duplicates
Another broken search request:
http://api.cybertaxonomy.org/flora_cuba/portal/taxon/find.json?doTaxaByCommonNames=...
Andreas Kohlbecker
01:01 PM Revision c4f7a205 (cdmlib): fix #6296: fix problems for simple search
Katja Luther
11:58 AM bug #6274 (Closed): add update of childrenCount cache in repair method
works fine Andreas Müller
11:47 AM feature request #6352 (New): Add Transmission Engine trigger to Admin menu
From the Admin menu we can now trigger sortindex refresh and cache update.
It would be nice to have a functionalit...
Andreas Müller
11:01 AM bug #2939 (In Progress): ehcache diskStore conflict?
Andreas Kohlbecker
10:59 AM bug #2939: ehcache diskStore conflict?
latest location of the according documentation: http://www.ehcache.org/generated/2.10.3/html/ehc-all/#page/Ehcache_Do... Andreas Kohlbecker
10:51 AM feature request #4490 (Resolved): Make the label of the taxon page tabs customizable for portal a...
The menu cache is now refreshed automatically. Andreas Kohlbecker
10:51 AM Revision 93115722 (cdm-dataportal): ref #4490 automatic menu cache refresh after tab label changes
Andreas Kohlbecker
10:47 AM task #6158 (Feedback): Update EDIT documentation from svn to git
At most places it is updated. I found some additional issues:
* dataportal: link to SourceRepository is broken
* ...
Andreas Müller
10:39 AM Revision 69d02d97 (taxeditor): check for id==0 before try to delete the media
Katja Luther
10:28 AM feature request #3465 (Closed): Function to copy secundum reference of a given taxon node to all ...
looks fine Katja Luther
10:13 AM Revision 0fc610dc (cdmlib): add test for different search combinations
Katja Luther
09:24 AM Revision 7304d345 (cdmlib): fixed copy paste error for common name search
Katja Luther

01/19/2017

11:23 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
Andreas Müller wrote:
> ... Also "Other" is not in the expected order.
This is still an open issue, see descripti...
Andreas Müller
11:00 PM feature request #4490 (Feedback): Make the label of the taxon page tabs customizable for portal a...
I switched it on for Campanula and Mexico Rubiaceae.
Worked for Rubiaceae after a couple of refreshs. For Campanul...
Andreas Müller
06:04 PM bug #6349 (Resolved): Fix media description handling
Applied in changeset commit:cdm-dataportal|09e628ea8e2c8c2dac8e2b9d6e7d532b1974e020. Andreas Kohlbecker
04:29 PM bug #6349 (Closed): Fix media description handling
Since version 4.5 Media.description is shown in image galleries and on media pages.
Problem: a separator is missing ...
Andreas Müller
06:04 PM Revision 95733a84 (cdm-dataportal): Merge tag '4.5.1' into develop
hot-fix release 4.5.1 Andreas Kohlbecker
06:04 PM Revision 19994453 (cdm-dataportal): Merge branch 'hotfix/4.5.1'
Andreas Kohlbecker
06:03 PM Revision 09e628ea (cdm-dataportal): fix #6349 media description separate from title
Andreas Kohlbecker
05:53 PM Revision 67a5cafa (cdm-dataportal): ref #4223 dynamically added phrase search parentheses must no...
Andreas Kohlbecker
05:49 PM Revision 38753115 (cdm-dataportal): classification search filter was no longer stored in the session
Andreas Kohlbecker
05:30 PM bug #6248 (Closed): allow machine clients to access /manage/* OAuth2 protected web services
This perfectly works, the `managing-users.properties` are all edited so that they have an according user.
Andreas Kohlbecker
05:28 PM feature request #6351 (Closed): jenkins cdmserver-index-job.groovy supports http basic authentic...
the [cdmserver-index-job.groovy](http://160.45.63.176/jenkins/scriptler/editScript?id=cdmserver-index-job.groovy) nee... Andreas Kohlbecker
04:55 PM bug #6259 (Closed): Media page problems with multiple media representations
Seems to be fixed. Maybe we can improve the layout one day. Andreas Müller
04:51 PM bug #6350 (New): Advanced search areas show empty brackets if idInVocabulary is not given
e.g. for Salvador areas Andreas Müller
04:49 PM bug #6260 (Closed): media page: rights stored in the cdm are not displayed
fixed Andreas Müller
04:48 PM feature request #6301 (Closed): Display of sources for images
Given that there is the follow up ticket this ticket can be closed. Andreas Müller
04:12 PM feature request #6288 (Closed): harmonize CommonName feature block elements
Andreas Kohlbecker
04:07 PM bug #2957 (Closed): running maven site:site for Taxonomic Editor fails
Andreas Kohlbecker
04:01 PM feature request #6278 (Closed): add sec reference as class attribute to all taxon markup
Andreas Kohlbecker
03:47 PM bug #4223 (Closed): Advanced search returns unexpected results
Andreas Kohlbecker
03:46 PM bug #6323 (Closed): LIE during request to name_catalogue/taxon.json
Andreas Kohlbecker
03:43 PM bug #6317 (Closed): LIE during request to portal/taxon/find.json
Andreas Kohlbecker
03:42 PM bug #6268 (Closed): descriptions missing in media service responses
Andreas Kohlbecker
03:42 PM bug #6261 (Closed): NPE while processing /portal/media/{uuid}/sources in BaseController
Andreas Kohlbecker
03:39 PM feature request #6249 (Closed): better logging strategy
Andreas Kohlbecker
03:33 PM bug #6227 (Closed): LIE during request to derivedUnitFacade/{uuid}/collectingareas
Andreas Kohlbecker
03:29 PM bug #4377 (Closed): LazyInitializationException (LIE) related to Team.teamMembers when calling ...
Andreas Kohlbecker
03:28 PM bug #6296 (In Progress): Simple search for common names returns duplicates
This works now in general but searching only for common names causes an exception:
http://api.cybertaxonomy.org/sa...
Andreas Kohlbecker
02:16 PM bug #6186 (Worksforme): Drupal nodes are created even if Create drupal nodes is off
Andreas Müller
01:37 PM bug #6342 (Closed): Exception when searching for '?' in TaxonNodeSelectionDialog
works fine now Patrick Plitzner
10:35 AM bug #6342 (Resolved): Exception when searching for '?' in TaxonNodeSelectionDialog
Applied in changeset commit:cdmlib|3d654cd328d3f29666636bf5fec391629be47123. Katja Luther
12:57 PM bug #6347 (Closed): Improve layout for navigator sorttype selection
In the preferences for taxon navigator we have sorting as one issue.
We should try to group this with a header "So...
Andreas Müller
12:19 PM Revision 8cd1a7e1 (cdm-server): Merge branch 'release/4.5.0' into develop
jenkins
12:18 PM Revision c6f5d3e2 (cdm-server): updating poms for branch'release/4.5.0' with non-snapshot versions
jenkins
12:18 PM Revision e8935d59 (cdm-webapp): Merge branch 'release/4.5.0' into develop
jenkins
12:17 PM Revision f62bfa60 (cdm-webapp): updating poms for branch'release/4.5.0' with non-snapshot versions
jenkins
12:17 PM Revision 351d7aab (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.5.0
jenkins
12:17 PM Revision 20bb34f8 (cdm-vaadin): Merge branch 'release/4.5.0' into develop
jenkins
12:15 PM Revision 17a27847 (cdm-vaadin): updating poms for branch'release/4.5.0' with non-snapshot versions
jenkins
12:15 PM Revision 61cb444a (cdm-vaadin): jenkins bumping cdmlib.version to 4.5.0
jenkins
12:15 PM Revision 33a01a85 (cdm-dataportal): Merge branch 'release/4.5.0' into develop
jenkins
12:15 PM Revision 1722f82f (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
jenkins
12:15 PM Revision af7ae5e8 (cdm-dataportal): updating poms for branch'release/4.5.0' with non-snapshot ver...
jenkins
12:14 PM Revision 08d303c3 (cdm-dataportal): release-preparation: production level css
jenkins
12:14 PM Revision a338301d (taxeditor): Merge branch 'release/4.5.0' into develop
jenkins
12:14 PM Revision d06f9823 (taxeditor): Merge branch 'release/4.5.0'
jenkins
12:13 PM Revision 50d31712 (cdmlib): Merge branch 'master' into develop
jenkins
12:13 PM Revision 264ec9d2 (cdmlib): Updating develop poms back to pre merge state
jenkins
12:13 PM Revision 0784de46 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
12:13 PM Revision bd4fc52b (cdmlib): Merge branch 'release/4.5.0'
jenkins
11:56 AM Revision 3b6b3a2e (cdmlib): updating poms for branch'release/4.5.0' with non-snapshot versions
jenkins
11:54 AM Revision 21e2b938 (taxeditor): Updated version in pom / project files to taxeditor version : 4.6....
jenkins
11:54 AM Revision 63b6ac4b (taxeditor): Updated version in pom / project files to taxeditor version : 4.5....
jenkins
11:46 AM Revision 74c7e1e5 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.5.0-SN...
jenkins
11:46 AM Revision de244005 (cdm-webapp): updating poms for 4.6.0-SNAPSHOT development
jenkins
11:46 AM Revision 20b625d5 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.6.0-SN...
jenkins
11:45 AM Revision 66ab25b8 (cdm-dataportal): updating poms for 4.6.0-SNAPSHOT development
jenkins
11:45 AM Revision be4eda17 (cdm-vaadin): jenkins bumping cdmlib.version to 4.5.0-SNAPSHOT
jenkins
11:45 AM Revision 4683974a (cdm-vaadin): updating poms for 4.6.0-SNAPSHOT development
jenkins
11:45 AM Revision ee63a3b0 (cdm-server): updating poms for 4.6.0-SNAPSHOT development
jenkins
11:44 AM Revision 372f5add (cdm-vaadin): jenkins bumping cdmlib.version to 4.6.0-SNAPSHOT
jenkins
11:44 AM Revision 893ee34c (taxeditor): missed to add some selection dialogs with last commit
Katja Luther
11:42 AM Revision 82532813 (cdmlib): updating poms for 4.6.0-SNAPSHOT development
jenkins
10:44 AM feature request #6346 (New): Implement filtering and sorting for specimen table in dataportal
Patrick Plitzner
10:39 AM Revision 235fd63d (taxeditor): fix #6342: fix exception when using ? in selection dialog
Katja Luther
10:35 AM Revision 3d654cd3 (cdmlib): fix #6342: fix exception for ? in selection dialog
Katja Luther
10:26 AM bug #6345 (New): Zooming with mouse wheel resets manually adjusted size of areas in AlignmentEditor
1. Change the size of the different areas (single read, consensus, multi-read)
1. Zoom with CTRL+mouse wheel
1. Siz...
Patrick Plitzner
08:46 AM feature request #6344 (New): Restrict UI for editing molecular data
After a testing session with Norbert we decided to use a very restrictive UI to avoid any synchronization problems. T... Patrick Plitzner

01/18/2017

11:47 PM bug #6343 (In Progress): TermVocabularies of OrderedTerms must be OrderedVocabularies
Andreas Müller
11:46 PM bug #6343 (In Progress): TermVocabularies of OrderedTerms must be OrderedVocabularies
Updatescript for TermVocabularies of OrderedTerms which are not OrderedVocabularies.
See also https://dev.e-taxono...
Andreas Müller
11:39 PM feature request #5474: TermEditor menu should be more structured
Please also add a separator above "Others" Andreas Müller
11:38 PM feature request #5474 (Feedback): TermEditor menu should be more structured
Please use i18n (translations for term types themselves will also be offered soon, there is a ticket). Be aware that ... Andreas Müller
11:35 PM Revision 3f70c8a3 (taxeditor): ref #5474 other -> others
Andreas Müller
11:29 PM feature request #6314: CDM light (csv) export implemented
Katja: Ich habe diese und die vorherige Version auch nochmal unter Y:\BDI\EDIT-Plattform\_Latest Versions\Output Mode... Andreas Müller
11:20 PM Revision e5dfd829 (cdmlib-apps): ref #5974 remove synonymRelationships from BfN Import init strategy
Andreas Müller
11:03 PM bug #6042: Campanula portal TODOS
Can you please adapt (or remove) target version. 4.5 does not seem to be correct. Andreas Müller
06:14 PM bug #6042 (Closed): Campanula portal TODOS
Patrick Plitzner
06:15 PM feature request #6321: Implement parallel loading + progress bar for loading objects into the bul...
Currently we have a warning if more than 500(?) objects are going to be loaded into an bulk editor. Instead we should... Andreas Müller
05:59 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
Andreas Müller wrote:
> Have you checked if we can reuse / combine the Comparator developed for #3185?
The other co...
Patrick Plitzner
05:54 PM Revision 1b0d0ec1 (taxeditor): ref #5714 Fix ordering of source types
- order by key instead of message
- always have either taxonomic or media source as first and the other
as second
Patrick Plitzner
04:23 PM bug #6283: Exceptions when editing polytomous key
I am not really sure what to test here because I do not know how to reproduce the problem. I clicked around and added... Patrick Plitzner
04:23 PM Revision 6ed48b2e (taxeditor): ref #6283 Fixed potential NPE for EntitySelectionElement
- refactored constructors to always initialise the clazz variable Patrick Plitzner
04:21 PM bug #6342 (Closed): Exception when searching for '?' in TaxonNodeSelectionDialog
1. In Navigator right-click on a taxon
1. Choose "Move Taxon (with children)"
1. Search for all taxon nodes with '?...
Patrick Plitzner
02:49 PM Revision 9a3af936 (taxeditor): fix #5496 Refactor preference pages to use TermType
Patrick Plitzner
11:08 AM Revision cbb4cfac (taxeditor): TIC dependecy version updated.
Ben Stöver
09:45 AM feature request #5365 (Feedback): Add delete configurator to Media View image gallery
When trying to delete an unsaved, recently created image from an image gallery I get an NPE
~~~
login : admin
ed...
Patrick Plitzner
09:39 AM bug #6334 (Closed): Deleting unsaved TaxonDescription does not work
works fine Patrick Plitzner
09:32 AM bug #6333 (Resolved): add existing media to a taxon description is not persisted
I removed the option to change an existing media element in the DetailsView. Instead We should add the option to add ... Patrick Plitzner
09:28 AM Revision d89cdff1 (taxeditor): ref #6333 Remove framework for exchanging an element in the detail...
- This is against the concept of the DetailsView just showing an
element which you can edit. Changing the element req...
Patrick Plitzner
09:16 AM Revision f5b66699 (taxeditor): ref #6333 Add generic support for entity collection sections to allow
adding existing entities
- this is done by two abstract methods allowAddExisting() and
addExisting()
Patrick Plitzner

01/17/2017

12:32 AM feature request #5922 (Closed): Change order in supplemental data view
Andreas Müller
12:27 AM bug #6341 (New): Show botanical nomenclatural status types not for zoological names
This is a bit more difficult than #5488 as we first need to figure out which botanical status are purely botanical an... Andreas Müller
12:23 AM bug #6340 (Closed): Update script for nomenclatural status types
Until #5488 was solved it was possible to add a zoological nom status to a botanical name in TaxEditor.
Especially f...
Andreas Müller
12:08 AM bug #6307 (Closed): Logfile/exception dialog should show connected datasource
Looks fine now Andreas Müller
11:55 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
Have you checked if we can reuse / combine the Comparator developed for #3185? Andreas Müller
11:52 PM feature request #5714: In Original Source Type dropdown show Primary Taxonomic Source first
... Also "Other" is not in the expected order. Andreas Müller
11:51 PM feature request #5714 (Feedback): In Original Source Type dropdown show Primary Taxonomic Source ...
Only Primary Taxonomic Source is on top, but Primary Media Source is not yet second and also no alphabetic ordering o... Andreas Müller
11:42 PM Revision a66eea38 (taxeditor): ref #6307 remove cdmserver/ from contextpath
Andreas Müller
11:29 PM Revision 01840d49 (taxeditor): ref #5922 Change order in supplemental data view (cont.)
Andreas Müller
10:56 PM Revision 4e54c1d9 (cdmlib-apps): Add some Spanish representations to Salvador terms
Andreas Müller
05:48 PM Revision 885af082 (cdmlib): ref #6339 reducing code duplication
Andreas Kohlbecker
05:43 PM Revision 733faa22 (cdmlib): Initialise sample designation to format keys for IdentifiableEntity
Patrick Plitzner
05:38 PM bug #6339 (Closed): frontendBaseUrl parameter not longer working in web services
Andreas Kohlbecker
05:21 PM bug #6339 (Resolved): frontendBaseUrl parameter not longer working in web services
Applied in changeset commit:cdmlib|fcfd1e30ae194d17b3be1bae4b5f09dcbb52eaa0. Andreas Kohlbecker
05:19 PM bug #6339 (In Progress): frontendBaseUrl parameter not longer working in web services
Andreas Kohlbecker
04:27 PM bug #6339 (Closed): frontendBaseUrl parameter not longer working in web services
see #6338 General notes Andreas Kohlbecker
05:21 PM Revision fcfd1e30 (cdmlib): fix #6339 fixing missing respect to the frontendBaseUrl
Andreas Kohlbecker
04:49 PM Revision 1b7ce0af (cdmlib): ref #6248 also protecting /**description/accumulateDistributions
Andreas Kohlbecker
04:36 PM Revision 61d32ca1 (cdmlib): ref #6249 prefixig all logappender with instance (bean) name for Enha...
Andreas Kohlbecker
03:28 PM feature request #6337 (New): simple web ui to trigger the transmission engine distribution
in case #6352 is implemented this issue becomes obsoltete Andreas Kohlbecker
02:50 PM bug #6209 (Resolved): NPE in DatasourceView
Andreas Müller
01:00 PM bug #6209: NPE in DatasourceView
The message is changed and a new ticket for the email of the admin is created (#6335). Katja Luther
02:07 PM bug #6336 (Closed): NPE when deleting recently created media
1. Create new image gallery for a taxon
1. Directly delete the image -> NPE
~~~
!ENTRY eu.etaxonomy.taxeditor.ed...
Patrick Plitzner
01:29 PM bug #6333 (In Progress): add existing media to a taxon description is not persisted
Patrick Plitzner
10:28 AM bug #6333 (Resolved): add existing media to a taxon description is not persisted
when adding an existing media to a taxon description shows up correctly, but after changing the view and come back to... Katja Luther
01:00 PM feature request #6335 (New): Providing the admin email for each server instance somehow
For some issues the edit support is not responsible for the error messages but the server admin of an instance. There... Katja Luther
12:51 PM feature request #4766 (Resolved): Repair Methods for the cdm instance
I added the sortIndex Updater and the cache updater. Please have a look, if everything works or any suggestions for i... Katja Luther
12:44 PM bug #6283 (Resolved): Exceptions when editing polytomous key
Katja Luther
12:44 PM bug #6283: Exceptions when editing polytomous key
I test it again and it works now. Please test, if there are NPE when editing the key. Katja Luther
11:57 AM Revision 9d28ffb6 (taxeditor): minor
Katja Luther
11:56 AM bug #6334 (Resolved): Deleting unsaved TaxonDescription does not work
Applied in changeset commit:taxeditor|1f9fcd90f5cd65d1d848ddeb93531e55dc6b100f. Katja Luther
11:03 AM bug #6334 (Closed): Deleting unsaved TaxonDescription does not work
1. Create new TaxonDescription in FactualData view
1. Delete that TaxonDescription
1. TaxonDescription is still the...
Patrick Plitzner
11:56 AM Revision 1f9fcd90 (taxeditor): fix #6334: unsaved description needs to be removed from the taxon
Katja Luther
11:52 AM Revision 40de894f (taxeditor): add missing changes
Katja Luther
11:46 AM Revision 5291be06 (taxeditor): minor
Katja Luther
11:25 AM bug #6248 (Resolved): allow machine clients to access /manage/* OAuth2 protected web services
Applied in changeset commit:cdmlib|c05f3fc567c3839ded9d89c6c0f81834fe11e1d2. Andreas Kohlbecker
11:09 AM bug #6248: allow machine clients to access /manage/* OAuth2 protected web services
oauth2 with grant type 'client' is not really needed. It would require that the client can authenticate with username... Andreas Kohlbecker
11:25 AM Revision c05f3fc5 (cdmlib): fix #6248 implementing global management users for machine clients
Andreas Kohlbecker
11:12 AM bug #6281: delete synonym with annotations throws exception
same problem, when the synonym has original sources.
~~~ text
login : W.Greuter
editor version : 4.4.1
server :...
Katja Luther
11:10 AM Revision f70049c0 (cdmlib): minor code cleaning
Andreas Kohlbecker
11:00 AM feature request #5365 (Resolved): Add delete configurator to Media View image gallery
Applied in changeset commit:taxeditor|d747b2b97eb8df327a6096e37a9b644cbd950295. Katja Luther
11:00 AM Revision d747b2b9 (taxeditor): fix #5365: add delete configuration to media view
Katja Luther

01/16/2017

12:45 PM Revision a2b0aaba (cdmlib-apps): Merge branch 'master' into noChecklistClone
Patrick Plitzner
12:40 PM Revision 2c298347 (cdmlib-apps): ref #5448 Add new rank "forme"
- did some refactoring and advanced logging Patrick Plitzner
11:19 AM Revision e7788357 (cdmlib): removing unused and misleading method
Andreas Kohlbecker
11:14 AM feature request #6332 (New): cdm-dataportal as oauth2 client of cdm-remote instances
The drupal modules providing oauth2 client functionality:
* [oauth2_client](https://www.drupal.org/project/oauth2_...
Andreas Kohlbecker
10:45 AM Revision b7d5770a (cdmlib): ref #6118 enabling missing httpbasic authentication for oauth secured...
Andreas Kohlbecker
10:08 AM feature request #5365: Add delete configurator to Media View image gallery
Sorry, I added the delete configuration only to the bulk editor. Will add it to the media galery as well, Katja Luther
09:17 AM Revision 981251f1 (cdmlib): cleaning up CdmUtils
- removing usused method
- reducing code duplication
Andreas Kohlbecker

01/13/2017

12:44 AM feature request #5365 (Feedback): Add delete configurator to Media View image gallery
Andreas Müller
02:05 PM feature request #5365: Add delete configurator to Media View image gallery
There is no popup at all when I delete an image from an image gallery. I tried it with an image attached to a taxon i... Patrick Plitzner
05:19 PM bug #6331 (New): Inserting gaps in the AlignmentEditor using the space key does not work anymore
See https://secure.bioinfweb.info/Bugs/Bugzilla/show_bug.cgi?id=153
Workaround: Use the '-' key instead.
Ben Stöver
04:50 PM Revision ae1b83c4 (taxeditor): Removed double reference to TIC in molecular.lib.
Ben Stöver
04:35 PM Revision fff59041 (taxeditor): remove unused bin.include
Patrick Plitzner
04:02 PM Revision 645c77a1 (taxeditor): Saving files before refreshing line endings
Patrick Plitzner
03:33 PM Revision 1c69b0d0 (taxeditor): Merge branch 'develop' into LibrAlign
Patrick Plitzner
03:11 PM Revision 64f25b56 (taxeditor): Alternative versions for build.properties added. Current state set...
Ben Stöver
01:51 PM Revision 6de63659 (taxeditor): ref #5495 always empty details view when there is no active editor
providing a selection Patrick Plitzner
01:33 PM Revision e54b6c76 (taxeditor): pom.xml and MANIFEST.MF updated in molecular.lib.
Ben Stöver
01:27 PM bug #2957 (Resolved): running maven site:site for Taxonomic Editor fails
Andreas Müller
01:23 PM bug #2957: running maven site:site for Taxonomic Editor fails
Andreas Kohlbecker wrote:
> As far as i can see there is no other information from subprojects that needs to be incl...
Patrick Plitzner
11:19 AM bug #2957: running maven site:site for Taxonomic Editor fails
As far as i can see there is no other information from subprojects that needs to be included into the site doc.
Add...
Andreas Kohlbecker
10:28 AM bug #2957 (Feedback): running maven site:site for Taxonomic Editor fails
On my local machine I tried running `mvn site:site` which at first crashed. Then I tried `mvn install` first and then... Patrick Plitzner
01:15 PM feature request #5055 (Closed): Integrate Luna installation instruction into standard installatio...
This has been resolved by fixing #6158 Patrick Plitzner
12:08 PM Revision ef1673ea (taxeditor): Adjustments to project structure changes in JPhyloIO.
Ben Stöver
12:07 PM task #6158 (Resolved): Update EDIT documentation from svn to git
Andreas Müller
10:38 AM task #6158 (Feedback): Update EDIT documentation from svn to git
Patrick Plitzner
10:37 AM task #6158 (Resolved): Update EDIT documentation from svn to git
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > I updated the documentation of taxeditor and cdmlib (change...
Patrick Plitzner
10:26 AM task #6158 (Feedback): Update EDIT documentation from svn to git
Andreas Müller
09:46 AM task #6158: Update EDIT documentation from svn to git
Patrick Plitzner wrote:
> I updated the documentation of taxeditor and cdmlib (changed only the repository informati...
Andreas Kohlbecker
09:29 AM task #6158: Update EDIT documentation from svn to git
I updated the documentation of taxeditor and cdmlib (changed only the repository information from svn to git here).
...
Patrick Plitzner
09:21 AM task #6158 (Resolved): Update EDIT documentation from svn to git
Applied in changeset commit:taxeditor|8e2a3b6327166e1cd821a6dbeb9df2e2a27f4988. Patrick Plitzner
11:18 AM bug #4223: Advanced search returns unexpected results
Works for me in the Corvids test portal now. Gabriele Dröge
11:10 AM bug #4223: Advanced search returns unexpected results
this issue is fully solved now, please do the review asap. Andreas Kohlbecker
10:25 AM bug #4223 (Resolved): Advanced search returns unexpected results
Applied in changeset commit:cdmlib|5c69d02f232481e02f850bfd10404566a8373e5b. Andreas Kohlbecker
11:08 AM Revision 7d42c393 (cdm-dataportal): solving probelms with search parameters not being remembered
Andreas Kohlbecker
10:49 AM Revision b3d49e6e (cdm-dataportal): ref #4223 lucene based taxon search always as phrase search
Andreas Kohlbecker
10:48 AM Revision 103a1463 (cdm-dataportal): typos and fixing messages
Andreas Kohlbecker
10:25 AM Revision 5c69d02f (cdmlib): fix #4223 using the ComplexPhraseQuery for phrase searches with wildc...
Andreas Kohlbecker
09:26 AM Revision 8b607fc9 (cdmlib): ref #6158 Update source code repository from svn to git
Patrick Plitzner
09:25 AM Revision a2cfd9b1 (taxeditor): ref #6158 Add missing git clone command to doc
Patrick Plitzner
09:21 AM Revision 8e2a3b63 (taxeditor): fix #6158 updated taxeditor installation documentation
Patrick Plitzner

01/12/2017

11:59 PM feature request #5922: Change order in supplemental data view
Extensions still could be moved down (taxeditor|55409937). Markers we can leave were they are for now as this is more... Andreas Müller
11:57 PM Revision 55409937 (taxeditor): fix #5922 Move extensions section down
Andreas Müller
11:56 PM Revision 79be504a (taxeditor): cleanup
Andreas Müller
11:49 PM bug #5698 (Closed): Ampersand (&) is not shown in labels for NameRelationships in details view
seems to work Andreas Müller
10:31 PM bug #4223: Advanced search returns unexpected results
Andreas Kohlbecker wrote:
> Here we are facing two problems:
>
> 1. The portal does not allow to do a phrase sear...
Andreas Kohlbecker
06:50 PM bug #4223: Advanced search returns unexpected results
The `ComplexPhraseQueryParser` is still available in the our current lucene version, so we could give this one a try. Andreas Kohlbecker
06:27 PM bug #4223: Advanced search returns unexpected results
Here we are facing two problems:
1. The portal does not allow to do a phrase search with a query string like `"Gar...
Andreas Kohlbecker
10:28 PM Revision 8bb9f541 (cdm-dataportal): ref #4223 fixing request uri for accepted taxa
solves problem 1) in issue Andreas Kohlbecker
05:58 PM bug #6227 (Resolved): LIE during request to derivedUnitFacade/{uuid}/collectingareas
Applied in changeset commit:cdmlib|5f3efd0eb42e522ee613872715c821753a1d6004. Andreas Kohlbecker
05:58 PM Revision 5f3efd0e (cdmlib): fix #6227 solvig LIE in DerivedUnitFacade webservice
Andreas Kohlbecker
05:44 PM feature request #6301: Display of sources for images
please do the review Andreas Kohlbecker
01:50 PM feature request #6301 (Resolved): Display of sources for images
Applied in changeset commit:cdm-dataportal|0c2b9b9d85abf12805482981dde310fa1b6c1b45. Andreas Kohlbecker
05:36 PM Revision a1493182 (cdm-dataportal): ref #6301 sources as inline elements on media page - bugfix
Andreas Kohlbecker
05:18 PM feature request #6327: Providing the admin email for each server instance somehow
Andreas Müller wrote:
> Do we have an idea who the admin actually is?
> Is it the user "admin" with email stored (o...
Andreas Kohlbecker
04:53 PM feature request #6327: Providing the admin email for each server instance somehow
Do we have an idea who the admin actually is?
Is it the user "admin" with email stored (or not) in the CDM?
Or is...
Andreas Müller
03:30 PM feature request #6327 (New): Providing the admin email for each server instance somehow
sometimes it is useful to give contact informations of the server admin to the user, therefore we need this informati... Katja Luther
05:15 PM bug #6329: improve display of media sources and annotations
Andreas Müller wrote:
> I don't understand why the captions are relevant here sources and annotations are not depend...
Andreas Kohlbecker
04:49 PM bug #6329: improve display of media sources and annotations
I don't understand why the captions are relevant here sources and annotations are not dependent on the captions and t... Andreas Müller
04:29 PM bug #6329: improve display of media sources and annotations
The sources and annotations are displayed differently in the image gallery and media page.
#### A. Gallery
1. S...
Andreas Kohlbecker
04:21 PM bug #6329 (New): improve display of media sources and annotations
follow up of #6301
The sources and annotations are displayed differently in the image gallery and media page.
#...
Andreas Kohlbecker
04:50 PM feature request #5671 (Resolved): Name selection should not allow self referencing name relations...
Applied in changeset commit:taxeditor|c1c83a38d07bdc4286ce7abb8b30789d0c32e637. Katja Luther
04:50 PM Revision c1c83a38 (taxeditor): fix #5671: add filter element for selection dialog
Katja Luther
04:49 PM Revision f79d32d6 (cdm-dataportal): ref #6301 sources as inline elements on media page
Andreas Kohlbecker
04:44 PM feature request #5365 (Resolved): Add delete configurator to Media View image gallery
Andreas Müller
02:46 PM feature request #5365: Add delete configurator to Media View image gallery
This works now. Please have a look. I have to find the changeset... Katja Luther
04:28 PM bug #6330 (Closed): Defined sort order for Mediarepresentations
If multiple MediaRepresentations are available for one Media the order is arbitrary as it has set semantics.
This ...
Andreas Müller
04:12 PM bug #6328 (New): Warn about available text in other languages if multi-language support disabled
If multi language support is disabled a Media.description is not shown if it is defined in another language than the ... Andreas Müller
01:57 PM Revision 028c6d17 (cdm-dataportal): ref #6301 removing stray characters
Andreas Kohlbecker
01:52 PM Revision 2b7ff891 (cdmlib): ref #6301 extending media objects returned by MediaListController
- adding sources Andreas Kohlbecker
01:50 PM Revision 0c2b9b9d (cdm-dataportal): fix #6301 implementing display of sources and annotations for...
Andreas Kohlbecker
11:28 AM bug #6326: Login from taxeditor not possible after logging out of vaadin distribution editor
Andreas Kohlbecker wrote:
> A problem in the session handling? Maybe solved when #5285 is completed?
>
> Are ther...
Patrick Plitzner
10:50 AM bug #6326: Login from taxeditor not possible after logging out of vaadin distribution editor
A problem in the session handling? Maybe solved when #5285 is completed?
Are there any observable abnormality in t...
Andreas Kohlbecker
10:01 AM bug #6326 (Worksforme): Login from taxeditor not possible after logging out of vaadin distributio...
I tested this with flora cuba on the test server (http://test.e-taxonomy.eu/cdmserver/flora_cuba/app/distribution)
...
Patrick Plitzner

01/11/2017

04:17 PM Revision 2a3b0c8e (cdm-dataportal): turning useless media related theme-functions into compose or...
moving functions to includes file Andreas Kohlbecker
04:14 PM Revision 91b4a452 (cdm-dataportal): missing deafult in media related compose function fixed
Andreas Kohlbecker
03:54 PM Revision a9815578 (cdm-dataportal): turning useless media related theme-functions into compose or...
Andreas Kohlbecker
02:24 PM bug #6325 (New): Handling of specimen imported via biocase with missing nomenclatural code
for ABCD import the parsing and assignement to an existing name works fine if the identification contains the nomenc... Katja Luther
02:14 PM bug #4377 (Resolved): LazyInitializationException (LIE) related to Team.teamMembers when calling...
Applied in changeset commit:cdmlib|8e6fba800484afd4d9570c39f630b47e49579624. Andreas Kohlbecker
02:14 PM Revision 8e6fba80 (cdmlib): fix #4377 adding missing bean init path missing after ref #5974
Andreas Kohlbecker
01:50 PM feature request #6076: Specimen search should work on observations
The specimen search works now on all types of specimen. Find the commit. Katja Luther
12:44 PM bug #6323 (Resolved): LIE during request to name_catalogue/taxon.json
Applied in changeset commit:cdmlib|04a88dbc1f00111e4cb3dfee0b1d940dffdb5bf6. Andreas Kohlbecker
12:09 PM bug #6323: LIE during request to name_catalogue/taxon.json
This bug has been caused by the changes applied through #5974 Andreas Kohlbecker
09:45 AM bug #6323 (Closed): LIE during request to name_catalogue/taxon.json

http://api.cybertaxonomy.org/col/name_catalogue/taxon.json?taxonUuid=19338fc3-dbd5-4bda-8cb3-8da76151f8c4
~~~
C...
Andreas Kohlbecker
12:44 PM Revision 2440f0fe (cdmlib): ref #6324 adding FIXME comment
Andreas Kohlbecker
12:44 PM Revision 04a88dbc (cdmlib): fix #6323 adding missing bean init path missing after ref #5974
Andreas Kohlbecker
12:12 PM bug #6324 (In Progress): fix dozer mapping after removal of synonym relations
the the dozer mapping file `/cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/tdwg/mappings-deep.xml` a p... Andreas Kohlbecker
08:12 AM Revision 2e82a602 (cdm-dataportal): ref #6320 Add page size to settings for compressed specimen t...
Patrick Plitzner

01/10/2017

04:45 PM Revision a5a9fcde (taxeditor): ref #6320 show pherogram title cache in single read label
Patrick Plitzner
04:44 PM Revision fe4c0713 (cdmlib): ref #6320 Add pherogram title cache to format keys
Patrick Plitzner
04:25 PM Revision 799a6449 (taxeditor): Fix icon for media derivative
Patrick Plitzner
04:19 PM bug #6322 (Closed): In the specimen editor showing the warning for long loading times already has...
I tried this on the campanula test DB when searching for 'Ar*' Patrick Plitzner
03:06 PM bug #6307 (Resolved): Logfile/exception dialog should show connected datasource
Applied in changeset commit:taxeditor|5b6653af71b7c1d3ae3998057cf3fa7502a76a58. Patrick Plitzner
01:46 PM bug #6307 (In Progress): Logfile/exception dialog should show connected datasource
Patrick Plitzner
03:06 PM Revision 4abd9b52 (taxeditor): Removed unused import
Patrick Plitzner
03:06 PM Revision 5b6653af (taxeditor): fix #6307 Show contextPath in error log
Patrick Plitzner
02:45 PM Revision c005189c (cdmlib-apps): Adapt English quotation marks
Andreas Müller
02:44 PM Revision aaea23f9 (cdmlib): Add new English quotation marks
Andreas Müller
01:58 PM feature request #4246 (Resolved): Allow inserting a new node at the beginning or somewhere else i...
Applied in changeset commit:taxeditor|40bd7837ec825e5caa98e20ae64592eab98c71c1. Katja Luther
01:57 PM Revision 40bd7837 (taxeditor): fix #4246: move insert node and create new key node to one menu it...
Katja Luther
01:36 PM Revision c964d5e8 (cdm-vaadin): Fix title of distribution settings view
Patrick Plitzner
01:13 PM feature request #6321 (Closed): Implement parallel loading + progress bar for loading objects int...
Patrick Plitzner
11:52 AM bug #4377: LazyInitializationException (LIE) related to Team.teamMembers when calling portal/ta...
Potentially a duplicate of #6317 Andreas Kohlbecker
11:40 AM bug #6319 (New): change background color if changing focus from name editor to another view
Hallo,
grundsätzlich ist das nicht völlig falsch, da der Fokus dieses Fensters ja weiterhin auf der entsprechenden...
Katja Luther
11:24 AM Revision 823a79dd (cdmlib-apps): ref #6265 remove Description from Salvador taxa
Andreas Müller
11:10 AM Revision 0d3ee32e (cdmlib): cleanup
Andreas Müller
10:33 AM bug #6244: Sortindex problems in complex operations like swap synonym and accepted and others
This was part of the bugfix release as far as I remember Andreas Müller
09:42 AM bug #6296 (Resolved): Simple search for common names returns duplicates
Katja Luther
09:34 AM Revision c2c05353 (cdmlib): some code cleaning
Katja Luther

01/09/2017

11:11 PM feature request #3465: Function to copy secundum reference of a given taxon node to all it's chil...
Applied in changeset commit:cdmlib|06bf3273fe5580bb9201cb85fe829a18885a6942. Andreas Müller
11:11 PM Revision 06bf3273 (cdmlib): fix #3465 Progressmonitor API and better UpdateResult handling for se...
Andreas Müller
06:03 PM bug #6318 (Closed): Truncate TextData in FactualData View
Walter:
Hallo Andreas,
wir sind jetzt der Sache mit den angeblich verstümmelten Editorial Notes und Notes auf di...
Andreas Müller
04:11 PM bug #6317 (Resolved): LIE during request to portal/taxon/find.json
Applied in changeset commit:cdmlib|79902c85abf9675dbc9838a71327de7a54b53dd4. Andreas Kohlbecker
12:31 PM bug #6317 (Closed): LIE during request to portal/taxon/find.json

http://api.cybertaxonomy.org/salvador/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1...
Andreas Kohlbecker
04:11 PM Revision 79902c85 (cdmlib): fix #6317 fixing LIE related to inReference author teams
Andreas Kohlbecker
03:54 PM Revision 88a2e4be (cdmlib): un-commenting test part
Andreas Kohlbecker
03:46 PM Revision d1382189 (cdmlib): ref #6296: minor
Katja Luther
03:39 PM Revision d841fb5d (cdmlib): ref #6296: minor
Katja Luther
03:29 PM bug #6296 (In Progress): Simple search for common names returns duplicates
With the test case mentioned in #6317 an exception is thrown:
~~~
2017-01-09 15:26:32.283:WARN:oejs.ServletHandle...
Andreas Kohlbecker
03:12 PM bug #6296 (Resolved): Simple search for common names returns duplicates
Applied in changeset commit:cdmlib|8311a989da231228857d6330f10d14286e93e6fe. Katja Luther
02:32 PM bug #6296: Simple search for common names returns duplicates
The commonNameSearch is now integrated into the taxa and synonym search query. Katja Luther
09:34 AM bug #6296: Simple search for common names returns duplicates
The method in question is
~~~java
Pager<IdentifiableEntity> eu.etaxonomy.cdm.api.service.TaxonServiceImpl.findT...
Andreas Kohlbecker
03:11 PM Revision 8311a989 (cdmlib): fix #6296: include the common name search into the search query of ta...
Katja Luther
11:36 AM feature request #6316: display source references of media objects in media page
In the media page the display of sources is missing. Andreas Kohlbecker
11:34 AM feature request #6316 (New): display source references of media objects in media page
* The sources should be an ordinary attribute here, not integrated in any footnote or annotation framework
* Conside...
Andreas Kohlbecker
11:29 AM Revision 1406bf5c (cdm-dataportal): multiple minor syntax problems
Andreas Kohlbecker

01/06/2017

12:20 AM Revision 721d9357 (cdmlib): cleanup
Andreas Müller
12:17 AM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor
The functionality has been implemented in #3465
It needs to be called via taxon navigator right click menu. A conf...
Andreas Müller
12:06 AM feature request #3465 (Resolved): Function to copy secundum reference of a given taxon node to al...
Applied in changeset commit:cdmlib|d97ab2bfb82c496c37bbb0d7f9b45aae078288be. Andreas Müller
12:03 AM Revision d97ab2bf (cdmlib): fix #3465 implement setSecundumForSubtree
Andreas Müller
04:40 PM Revision 1738ed58 (taxeditor): fix #5488 show only zoological nomenclatural status types not for
botanical names
- also dis some refactoring
Patrick Plitzner
03:49 PM Revision 2443669b (taxeditor): fix #5495 DetailsView is emptied when upon context stop i.e. when the
connection is shut down Patrick Plitzner
02:38 PM feature request #5714 (Resolved): In Original Source Type dropdown show Primary Taxonomic Source ...
Applied in changeset commit:taxeditor|0c7c9656704a352a2bdfea434d6b703245177c65. Patrick Plitzner
02:36 PM Revision 0c7c9656 (taxeditor): fix #5714 Add possibility for adding a comparator to EnumComboElement
- for Sources always have PrimaryTaxonomicSource or PrimaryMediaSource
on top depending on IdentifiableSource
Patrick Plitzner
02:22 PM feature request #6203: Implement unplaced and excluded in dataportal
In the navigator of the editor the nodes are loaded step by step. Therefore it is difficult to move all excluded and ... Katja Luther
01:11 PM feature request #6314 (Closed): CDM light (csv) export implemented
(Editorial Workflow in Platform-Projekten)
Hallo Katja,
wie gesagt, bevor wir ernsthaft anfangen, mit mehreren Le...
Katja Luther
12:56 PM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigati...
Andreas Müller wrote:
> 3) too wide child boxes:
>
> seems to work now. On mobile it shows only 3 columns and the...
Andreas Müller
11:21 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigati...
3) too wide child boxes:
seems to work now. On mobile it shows only 3 columns and they can be scolled, though it i...
Andreas Müller
11:06 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigati...
A new issue (maybe existed before but I did not realize): if trying to move the scrollbar by pressing the mouse butto... Andreas Müller
11:00 AM feature request #5956 (Feedback): Improve functionality and UX for (children display in) breadcru...
mobile devices:
on my Samsung S5 I still have a couple of problems
* when trying to click on the last symbol (...
Andreas Müller
10:31 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigati...
Andreas Kohlbecker wrote:
> all issues solved except the transparency which needs to be discussed.
>
> I am not...
Andreas Müller
11:59 AM bug #6300: DataIntegrityViolationException when saving a type
das war wohl etwas zu kurz:
Ich habe bei der Type Designation nach der Specimen Suche und „New“ im Formular „Genera...
Katja Luther
11:58 AM feature request #5474 (Closed): TermEditor menu should be more structured
looks good. Katja Luther
11:08 AM feature request #5474 (Resolved): TermEditor menu should be more structured
Applied in changeset commit:taxeditor|60e722d086b2b60ceda788e4b1ef85fbe01d13e7. Patrick Plitzner
11:54 AM bug #6296: Simple search for common names returns duplicates
tested findByEverythingFullText(), but this works fine also with more than one common name starting with the same wor... Katja Luther
09:24 AM bug #6296: Simple search for common names returns duplicates
This is a problem in the lucene search, if a taxon has two common names starting with "amate" the lucene search retur... Katja Luther
11:42 AM bug #6115 (Feedback): protect cdm content by drupal permission
Seems to work, so we can close this ticket.
Only issue is that it is difficult to use so I wonder if we can't have...
Andreas Müller
11:08 AM Revision 60e722d0 (taxeditor): fix #5474 moved Feature and NamedArea to top level
- remaining terms are under "Other..." Patrick Plitzner
10:29 AM feature request #6313 (New): Improve browser functionality of breadcrumbs
Copied from #5852
An other issue to become a full replacement of the classification tree is, that browsing is more...
Andreas Müller
10:24 AM feature request #6312 (New): [DISCUSS] Remove transparency from breadcrumps
copied from #5852: remove transparency: the transparency makes it more difficult to read the list. But we need a way ... Andreas Müller
10:10 AM feature request #2985: Improve Specimen details display
I created some test data at http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_dataportal/taxon/066e04d3-b586-4d... Andreas Müller
10:09 AM feature request #2985 (Feedback): Improve Specimen details display
1) works well
2a) works well in terms of area level being shown, but I wonder if the new Named Area page could not b...
Andreas Müller
08:59 AM bug #5698: Ampersand (&) is not shown in labels for NameRelationships in details view
Fixed this issue and also had a look at other labels. The fix was done generically in the LabelElement class so this ... Patrick Plitzner
08:56 AM bug #5698 (Resolved): Ampersand (&) is not shown in labels for NameRelationships in details view
Applied in changeset commit:taxeditor|4f22ac1d4e12311b019edf2f6c74337f7b4e243c. Patrick Plitzner
08:56 AM Revision 4f22ac1d (taxeditor): fix #5698 Duplicate ampersand to avoid conversion to mnemonic
Patrick Plitzner
08:41 AM feature request #5922: Change order in supplemental data view
I moved both sections to the bottom. The other solution is a bit more work and maybe not that necessary so I left it out Patrick Plitzner
08:40 AM feature request #5922 (Resolved): Change order in supplemental data view
Applied in changeset commit:taxeditor|ac2d218afe325b190be79a6a8e3fb145bd3cb241. Patrick Plitzner
08:39 AM Revision ac2d218a (taxeditor): fix #5922 Move credits and rights section to the bottom
Patrick Plitzner

01/05/2017

03:35 PM feature request #3465 (In Progress): Function to copy secundum reference of a given taxon node to...
This is probably a duplicate. Andreas Müller
03:24 PM task #4232: Check all Comparators for fulfilling the Comparator contract
Please report results of current effort and maybe check for new Comparators Andreas Müller
03:23 PM task #4232: Check all Comparators for fulfilling the Comparator contract
moved IdentifiableEntity.compareTo issue to new ticket #6311 Andreas Müller
03:22 PM bug #6311 (Rejected): Refactor IdentifiableEntity.compareTo method
The IdentifiableEntity.compareTo method needs to be updated.
First of all I added the test of equality of the uuid...
Andreas Müller
03:16 PM feature request #4570: Add vocabulary for Specimen Description Features
There might be a duplicate.
This issue will be discussed in the Additivity project.
Andreas Müller
02:56 PM bug #6300: DataIntegrityViolationException when saving a type
Maybe we can merge this ticket with a master ticket for duplicate entry issues. Andreas Müller
02:54 PM feature request #6305: [MASTER] Improve EDITOR import/export UI configuration panel for all impor...
we should create subtickets for each import Andreas Müller
01:52 PM feature request #5839: Improve error message when server can't be reached
Probably duplicate for #6209 Andreas Müller
01:28 PM feature request #6270: Feature Description, customized order, granular references
This is a complex issue with different solutions like IntextRefereces (#4719) (implemented in model but not in TaxEdi... Andreas Müller
01:01 PM feature request #6310 (New): second search block
Provide a second Search block, identical to the first one
> Die Konfiguration des Suchblocks müsste dann natürlic...
Andreas Kohlbecker
10:45 AM task #5285: Use Vaadin Spring Add-on
UPDATE:
Vaadin, the polyglot framework for building web apps with UI components, released version 1.1 of their Vaa...
Andreas Kohlbecker
10:29 AM bug #4945 (Feedback): Right click menu for polytomous key node list view needs correct enabling
Andreas Müller
10:26 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
Andreas Müller wrote:
> I tried to delete an in-between node answering the dialog if children should be deleted by "...
Andreas Müller
10:22 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
I tried to delete an in-between node answering the dialog if children should be deleted by "NO". This resulted in an ... Andreas Müller
10:20 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
Some issues:
* Refresh nodes is disabled if no selection, however, it probably always refreshes all nodes of the ke...
Andreas Müller
10:28 AM feature request #5841 (Closed): Creating a new alternative in PolytomousKey Editor should set foc...
Seems to work fine Andreas Müller

01/04/2017

12:11 AM bug #6209 (Feedback): NPE in DatasourceView
The error message is much better now. However, "Problem accessing remote server" is a very short message. We could ma... Andreas Müller
11:49 PM feature request #6050: provide the possibility to choose the fields of the simple details view fo...
Additionally there are layout and labeling issues
* No German translation
* (maybe functional) If "Show only a ...
Andreas Müller
11:36 PM feature request #6050 (Feedback): provide the possibility to choose the fields of the simple deta...
There are some functional issues:
* "Show appended phrase" can not be switched on
* "Show name relationship sec...
Andreas Müller
04:06 PM bug #6218 (Closed): NPE when editing term vocabulary label
Seems to be fixed Andreas Müller
03:08 PM Revision 9e550198 (taxeditor): fix #4821: create OrderedTermvoc for OrderedTerms
Katja Luther
02:34 PM bug #6309 (Closed): Creating an existing user throws exception
When creating a user with a username that does already exist throws an "unexpected error".
Instead an expected err...
Andreas Müller

01/03/2017

09:39 PM feature request #6308 (Resolved): Add configuration dialog for the deletion of synonyms in name e...
for the deletion of synonyms we also need a configuration dialog, similar to the deletion of taxa. Katja Luther
03:23 PM bug #6307 (Closed): Logfile/exception dialog should show connected datasource
Currently it shows information like
~~~
login : ki
editor version : 4.3.0
server : api.cybertaxonomy.org / cybe...
Andreas Müller
11:06 AM feature request #3573 (Closed): Improve EDITOR import UI configuration panel
Katja Luther
10:39 AM feature request #3573: Improve EDITOR import UI configuration panel
We should do this for all types of imports. Close this ticket and create a new one for the other imports, see #6305 Katja Luther
10:55 AM bug #6304 (In Progress): Deleting of Person used as user does not work
The isDeletable Method needs to be called. Katja Luther
10:38 AM feature request #6305 (New): [MASTER] Improve EDITOR import/export UI configuration panel for all...
see #3573
Master ticket for subtickets
Katja Luther
10:27 AM bug #4461 (Closed): Ordering in datasources view fails
works fine. Katja Luther
10:14 AM feature request #5971 (Closed): Implement database wide CdmPreference writing
this works now. Katja Luther
09:58 AM bug #6299 (Resolved): Error when deleting reference in bulk editor
Applied in changeset commit:cdmlib|82bf3f79c95b9d641ebd2528ca32c98a804c7019. Katja Luther
09:51 AM bug #6299: Error when deleting reference in bulk editor
This problem could be solved by catching the hibernate exception when there is no currentSession and create a new ses... Katja Luther
09:37 AM bug #6299: Error when deleting reference in bulk editor
I could reproduce the exception, following message is shown:
Could not obtain transaction-synchronized Session for...
Katja Luther
09:57 AM Revision 82bf3f79 (cdmlib): fix #6299: add openSession in getSession when there is no current se...
Katja Luther

12/23/2016

05:18 PM Revision 31092b58 (cdmlib-apps): minor
Andreas Müller
05:18 PM Revision acf4e805 (cdmlib-apps): ref #6286 first incomplete version of Flora Hellenica import
Andreas Müller
04:18 PM Revision b1fc732c (cdmlib-apps): ref #3934 latest changes to Salvador import
Andreas Müller
03:44 PM bug #6304 (Closed): Deleting of Person used as user does not work
A person that is referenced from the user class can not be deleted via bulk editor.
No exception is thrown but the u...
Andreas Müller
02:11 PM bug #6303 (Closed): distribution map is moving too fast
when trying to move the distribution map with the mouse it is moving too fast so I can't drag it to the point I'm loo... Gabriele Dröge
01:52 PM feature request #6302 (New): enable mouseover for distribution map
A mouseover for the distribution map would be very helpful (name of the area displayed). When adding multiple sources... Gabriele Dröge
11:45 AM feature request #6301 (Closed): Display of sources for images
Currently sources are not displayed for images in the dataportal. This is probably needed for Salvador and generally ... Andreas Müller

12/22/2016

04:07 PM bug #6300 (Closed): DataIntegrityViolationException when saving a type
Walter:
"Hallo,
habe eine Typusangabe in den Cache gestellt, beim Speichern des Taxons dann untenstehender Fehl...
Patrick Plitzner
04:02 PM bug #6299 (Feedback): Error when deleting reference in bulk editor
Henning:
Hallo zusammen,

die Meldung kam, als ich im BulkEditor (PhycoBank, production) „Testjournal“ lösche...
Patrick Plitzner
03:56 PM bug #6298 (New): Add delete button for areas for common names and for person in user
Walter:
" Bei den Areas gibt’s keinen Leereintrag und auch keinen Delete Knopf, ich bekomme also eine einmal ausgewä...
Patrick Plitzner
03:36 PM feature request #6288: harmonize CommonName feature block elements
I put the area and language label in one common span element which now has a different class attribute: `language-are... Andreas Kohlbecker
03:33 PM feature request #6288 (Resolved): harmonize CommonName feature block elements
Applied in changeset commit:cdm-dataportal|a20ddbc40ff8c0cd4ab5de022de3085606c2b512. Andreas Kohlbecker
03:33 PM Revision a20ddbc4 (cdm-dataportal): fix #6288 common names area and language label in one common ...
Andreas Kohlbecker
02:37 PM Revision c278f2a0 (cdm-dataportal): Fixing case of labels and adding spanisch translations
Andreas Kohlbecker
02:22 PM bug #6297: [Overview] BGBM User group wishes 2017
Hallo Andreas,
danke, nehme ich auf.
[Bin aber von der Lösung noch nicht so überzeugt, wenn ich das Ergebnis etw...
Andreas Müller
02:22 PM bug #6297 (New): [Overview] BGBM User group wishes 2017
For older tasks see #5595, #4585, #4031
* Footnotes (see comment below)
* Taxon annotations: #6192
* Original sp...
Andreas Müller
02:08 PM Revision 86ea4f4a (cdmlib-apps): ref #3934 latest changes to Salvador import
Andreas Müller
02:05 PM bug #6296 (Resolved): Simple search for common names returns duplicates
This is a bug the cdmlib-services
For example:
~~~
http -b http://api.cybertaxonomy.org/salvador/portal/taxon/...
Andreas Kohlbecker
12:04 PM bug #6295 (Closed): NPE when creating a new taxon
fixed with commit:taxeditor|cba60f25a0b26dbd884e94772d798e72ccf072e4. Patrick Plitzner
12:01 PM bug #6295 (Closed): NPE when creating a new taxon
Walter:
"Hallo,
ich habe aus Versehen einen Namen mit Literatur in die New Taxon Eingabe (aus dem Navigator auf...
Patrick Plitzner
11:09 AM Revision cba60f25 (taxeditor): Fix possible NPE
Patrick Plitzner
 

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