Project

General

Profile

Activity

From 12/15/2016 to 01/13/2017

01/13/2017

05:19 PM bug #6331 (New): Inserting gaps in the AlignmentEditor using the space key does not work anymore
See https://secure.bioinfweb.info/Bugs/Bugzilla/show_bug.cgi?id=153
Workaround: Use the '-' key instead.
Ben Stöver
04:50 PM Revision ae1b83c4 (taxeditor): Removed double reference to TIC in molecular.lib.
Ben Stöver
04:35 PM Revision fff59041 (taxeditor): remove unused bin.include
Patrick Plitzner
04:02 PM Revision 645c77a1 (taxeditor): Saving files before refreshing line endings
Patrick Plitzner
03:33 PM Revision 1c69b0d0 (taxeditor): Merge branch 'develop' into LibrAlign
Patrick Plitzner
03:11 PM Revision 64f25b56 (taxeditor): Alternative versions for build.properties added. Current state set...
Ben Stöver
02:05 PM feature request #5365: Add delete configurator to Media View image gallery
There is no popup at all when I delete an image from an image gallery. I tried it with an image attached to a taxon i... Patrick Plitzner
01:51 PM Revision 6de63659 (taxeditor): ref #5495 always empty details view when there is no active editor
providing a selection Patrick Plitzner
01:33 PM Revision e54b6c76 (taxeditor): pom.xml and MANIFEST.MF updated in molecular.lib.
Ben Stöver
01:27 PM bug #2957 (Resolved): running maven site:site for Taxonomic Editor fails
Andreas Müller
01:23 PM bug #2957: running maven site:site for Taxonomic Editor fails
Andreas Kohlbecker wrote:
> As far as i can see there is no other information from subprojects that needs to be incl...
Patrick Plitzner
11:19 AM bug #2957: running maven site:site for Taxonomic Editor fails
As far as i can see there is no other information from subprojects that needs to be included into the site doc.
Add...
Andreas Kohlbecker
10:28 AM bug #2957 (Feedback): running maven site:site for Taxonomic Editor fails
On my local machine I tried running `mvn site:site` which at first crashed. Then I tried `mvn install` first and then... Patrick Plitzner
01:15 PM feature request #5055 (Closed): Integrate Luna installation instruction into standard installatio...
This has been resolved by fixing #6158 Patrick Plitzner
12:08 PM Revision ef1673ea (taxeditor): Adjustments to project structure changes in JPhyloIO.
Ben Stöver
12:07 PM task #6158 (Resolved): Update EDIT documentation from svn to git
Andreas Müller
10:38 AM task #6158 (Feedback): Update EDIT documentation from svn to git
Patrick Plitzner
10:37 AM task #6158 (Resolved): Update EDIT documentation from svn to git
Andreas Kohlbecker wrote:
> Patrick Plitzner wrote:
> > I updated the documentation of taxeditor and cdmlib (change...
Patrick Plitzner
10:26 AM task #6158 (Feedback): Update EDIT documentation from svn to git
Andreas Müller
09:46 AM task #6158: Update EDIT documentation from svn to git
Patrick Plitzner wrote:
> I updated the documentation of taxeditor and cdmlib (changed only the repository informati...
Andreas Kohlbecker
09:29 AM task #6158: Update EDIT documentation from svn to git
I updated the documentation of taxeditor and cdmlib (changed only the repository information from svn to git here).
...
Patrick Plitzner
09:21 AM task #6158 (Resolved): Update EDIT documentation from svn to git
Applied in changeset commit:taxeditor|8e2a3b6327166e1cd821a6dbeb9df2e2a27f4988. Patrick Plitzner
11:18 AM bug #4223: Advanced search returns unexpected results
Works for me in the Corvids test portal now. Gabriele Dröge
11:10 AM bug #4223: Advanced search returns unexpected results
this issue is fully solved now, please do the review asap. Andreas Kohlbecker
10:25 AM bug #4223 (Resolved): Advanced search returns unexpected results
Applied in changeset commit:cdmlib|5c69d02f232481e02f850bfd10404566a8373e5b. Andreas Kohlbecker
11:08 AM Revision 7d42c393 (cdm-dataportal): solving probelms with search parameters not being remembered
Andreas Kohlbecker
10:49 AM Revision b3d49e6e (cdm-dataportal): ref #4223 lucene based taxon search always as phrase search
Andreas Kohlbecker
10:48 AM Revision 103a1463 (cdm-dataportal): typos and fixing messages
Andreas Kohlbecker
10:25 AM Revision 5c69d02f (cdmlib): fix #4223 using the ComplexPhraseQuery for phrase searches with wildc...
Andreas Kohlbecker
09:26 AM Revision 8b607fc9 (cdmlib): ref #6158 Update source code repository from svn to git
Patrick Plitzner
09:25 AM Revision a2cfd9b1 (taxeditor): ref #6158 Add missing git clone command to doc
Patrick Plitzner
09:21 AM Revision 8e2a3b63 (taxeditor): fix #6158 updated taxeditor installation documentation
Patrick Plitzner

01/12/2017

11:59 PM feature request #5922: Change order in supplemental data view
Extensions still could be moved down (taxeditor|55409937). Markers we can leave were they are for now as this is more... Andreas Müller
11:57 PM Revision 55409937 (taxeditor): fix #5922 Move extensions section down
Andreas Müller
11:56 PM Revision 79be504a (taxeditor): cleanup
Andreas Müller
11:49 PM bug #5698 (Closed): Ampersand (&) is not shown in labels for NameRelationships in details view
seems to work Andreas Müller
10:31 PM bug #4223: Advanced search returns unexpected results
Andreas Kohlbecker wrote:
> Here we are facing two problems:
>
> 1. The portal does not allow to do a phrase sear...
Andreas Kohlbecker
06:50 PM bug #4223: Advanced search returns unexpected results
The `ComplexPhraseQueryParser` is still available in the our current lucene version, so we could give this one a try. Andreas Kohlbecker
06:27 PM bug #4223: Advanced search returns unexpected results
Here we are facing two problems:
1. The portal does not allow to do a phrase search with a query string like `"Gar...
Andreas Kohlbecker
10:28 PM Revision 8bb9f541 (cdm-dataportal): ref #4223 fixing request uri for accepted taxa
solves problem 1) in issue Andreas Kohlbecker
05:58 PM bug #6227 (Resolved): LIE during request to derivedUnitFacade/{uuid}/collectingareas
Applied in changeset commit:cdmlib|5f3efd0eb42e522ee613872715c821753a1d6004. Andreas Kohlbecker
05:58 PM Revision 5f3efd0e (cdmlib): fix #6227 solvig LIE in DerivedUnitFacade webservice
Andreas Kohlbecker
05:44 PM feature request #6301: Display of sources for images
please do the review Andreas Kohlbecker
01:50 PM feature request #6301 (Resolved): Display of sources for images
Applied in changeset commit:cdm-dataportal|0c2b9b9d85abf12805482981dde310fa1b6c1b45. Andreas Kohlbecker
05:36 PM Revision a1493182 (cdm-dataportal): ref #6301 sources as inline elements on media page - bugfix
Andreas Kohlbecker
05:18 PM feature request #6327: Providing the admin email for each server instance somehow
Andreas Müller wrote:
> Do we have an idea who the admin actually is?
> Is it the user "admin" with email stored (o...
Andreas Kohlbecker
04:53 PM feature request #6327: Providing the admin email for each server instance somehow
Do we have an idea who the admin actually is?
Is it the user "admin" with email stored (or not) in the CDM?
Or is...
Andreas Müller
03:30 PM feature request #6327 (New): Providing the admin email for each server instance somehow
sometimes it is useful to give contact informations of the server admin to the user, therefore we need this informati... Katja Luther
05:15 PM bug #6329: improve display of media sources and annotations
Andreas Müller wrote:
> I don't understand why the captions are relevant here sources and annotations are not depend...
Andreas Kohlbecker
04:49 PM bug #6329: improve display of media sources and annotations
I don't understand why the captions are relevant here sources and annotations are not dependent on the captions and t... Andreas Müller
04:29 PM bug #6329: improve display of media sources and annotations
The sources and annotations are displayed differently in the image gallery and media page.
#### A. Gallery
1. S...
Andreas Kohlbecker
04:21 PM bug #6329 (New): improve display of media sources and annotations
follow up of #6301
The sources and annotations are displayed differently in the image gallery and media page.
#...
Andreas Kohlbecker
04:50 PM feature request #5671 (Resolved): Name selection should not allow self referencing name relations...
Applied in changeset commit:taxeditor|c1c83a38d07bdc4286ce7abb8b30789d0c32e637. Katja Luther
04:50 PM Revision c1c83a38 (taxeditor): fix #5671: add filter element for selection dialog
Katja Luther
04:49 PM Revision f79d32d6 (cdm-dataportal): ref #6301 sources as inline elements on media page
Andreas Kohlbecker
04:44 PM feature request #5365 (Resolved): Add delete configurator to Media View image gallery
Andreas Müller
02:46 PM feature request #5365: Add delete configurator to Media View image gallery
This works now. Please have a look. I have to find the changeset... Katja Luther
04:28 PM bug #6330 (Closed): Defined sort order for Mediarepresentations
If multiple MediaRepresentations are available for one Media the order is arbitrary as it has set semantics.
This ...
Andreas Müller
04:12 PM bug #6328 (New): Warn about available text in other languages if multi-language support disabled
If multi language support is disabled a Media.description is not shown if it is defined in another language than the ... Andreas Müller
01:57 PM Revision 028c6d17 (cdm-dataportal): ref #6301 removing stray characters
Andreas Kohlbecker
01:52 PM Revision 2b7ff891 (cdmlib): ref #6301 extending media objects returned by MediaListController
- adding sources Andreas Kohlbecker
01:50 PM Revision 0c2b9b9d (cdm-dataportal): fix #6301 implementing display of sources and annotations for...
Andreas Kohlbecker
11:28 AM bug #6326: Login from taxeditor not possible after logging out of vaadin distribution editor
Andreas Kohlbecker wrote:
> A problem in the session handling? Maybe solved when #5285 is completed?
>
> Are ther...
Patrick Plitzner
10:50 AM bug #6326: Login from taxeditor not possible after logging out of vaadin distribution editor
A problem in the session handling? Maybe solved when #5285 is completed?
Are there any observable abnormality in t...
Andreas Kohlbecker
10:01 AM bug #6326 (Worksforme): Login from taxeditor not possible after logging out of vaadin distributio...
I tested this with flora cuba on the test server (http://test.e-taxonomy.eu/cdmserver/flora_cuba/app/distribution)
...
Patrick Plitzner

01/11/2017

04:17 PM Revision 2a3b0c8e (cdm-dataportal): turning useless media related theme-functions into compose or...
moving functions to includes file Andreas Kohlbecker
04:14 PM Revision 91b4a452 (cdm-dataportal): missing deafult in media related compose function fixed
Andreas Kohlbecker
03:54 PM Revision a9815578 (cdm-dataportal): turning useless media related theme-functions into compose or...
Andreas Kohlbecker
02:24 PM bug #6325 (New): Handling of specimen imported via biocase with missing nomenclatural code
for ABCD import the parsing and assignement to an existing name works fine if the identification contains the nomenc... Katja Luther
02:14 PM bug #4377 (Resolved): LazyInitializationException (LIE) related to Team.teamMembers when calling...
Applied in changeset commit:cdmlib|8e6fba800484afd4d9570c39f630b47e49579624. Andreas Kohlbecker
02:14 PM Revision 8e6fba80 (cdmlib): fix #4377 adding missing bean init path missing after ref #5974
Andreas Kohlbecker
01:50 PM feature request #6076: Specimen search should work on observations
The specimen search works now on all types of specimen. Find the commit. Katja Luther
12:44 PM bug #6323 (Resolved): LIE during request to name_catalogue/taxon.json
Applied in changeset commit:cdmlib|04a88dbc1f00111e4cb3dfee0b1d940dffdb5bf6. Andreas Kohlbecker
12:09 PM bug #6323: LIE during request to name_catalogue/taxon.json
This bug has been caused by the changes applied through #5974 Andreas Kohlbecker
09:45 AM bug #6323 (Closed): LIE during request to name_catalogue/taxon.json

http://api.cybertaxonomy.org/col/name_catalogue/taxon.json?taxonUuid=19338fc3-dbd5-4bda-8cb3-8da76151f8c4
~~~
C...
Andreas Kohlbecker
12:44 PM Revision 04a88dbc (cdmlib): fix #6323 adding missing bean init path missing after ref #5974
Andreas Kohlbecker
12:44 PM Revision 2440f0fe (cdmlib): ref #6324 adding FIXME comment
Andreas Kohlbecker
12:12 PM bug #6324 (In Progress): fix dozer mapping after removal of synonym relations
the the dozer mapping file `/cdmlib-remote/src/main/resources/eu/etaxonomy/cdm/remote/dto/tdwg/mappings-deep.xml` a p... Andreas Kohlbecker
08:12 AM Revision 2e82a602 (cdm-dataportal): ref #6320 Add page size to settings for compressed specimen t...
Patrick Plitzner

01/10/2017

04:45 PM Revision a5a9fcde (taxeditor): ref #6320 show pherogram title cache in single read label
Patrick Plitzner
04:44 PM Revision fe4c0713 (cdmlib): ref #6320 Add pherogram title cache to format keys
Patrick Plitzner
04:25 PM Revision 799a6449 (taxeditor): Fix icon for media derivative
Patrick Plitzner
04:19 PM bug #6322 (Closed): In the specimen editor showing the warning for long loading times already has...
I tried this on the campanula test DB when searching for 'Ar*' Patrick Plitzner
03:06 PM bug #6307 (Resolved): Logfile/exception dialog should show connected datasource
Applied in changeset commit:taxeditor|5b6653af71b7c1d3ae3998057cf3fa7502a76a58. Patrick Plitzner
01:46 PM bug #6307 (In Progress): Logfile/exception dialog should show connected datasource
Patrick Plitzner
03:06 PM Revision 4abd9b52 (taxeditor): Removed unused import
Patrick Plitzner
03:06 PM Revision 5b6653af (taxeditor): fix #6307 Show contextPath in error log
Patrick Plitzner
02:45 PM Revision c005189c (cdmlib-apps): Adapt English quotation marks
Andreas Müller
02:44 PM Revision aaea23f9 (cdmlib): Add new English quotation marks
Andreas Müller
01:58 PM feature request #4246 (Resolved): Allow inserting a new node at the beginning or somewhere else i...
Applied in changeset commit:taxeditor|40bd7837ec825e5caa98e20ae64592eab98c71c1. Katja Luther
01:57 PM Revision 40bd7837 (taxeditor): fix #4246: move insert node and create new key node to one menu it...
Katja Luther
01:36 PM Revision c964d5e8 (cdm-vaadin): Fix title of distribution settings view
Patrick Plitzner
01:13 PM feature request #6321 (Closed): Implement parallel loading + progress bar for loading objects int...
Patrick Plitzner
11:52 AM bug #4377: LazyInitializationException (LIE) related to Team.teamMembers when calling portal/ta...
Potentially a duplicate of #6317 Andreas Kohlbecker
11:40 AM bug #6319 (New): change background color if changing focus from name editor to another view
Hallo,
grundsätzlich ist das nicht völlig falsch, da der Fokus dieses Fensters ja weiterhin auf der entsprechenden...
Katja Luther
11:24 AM Revision 823a79dd (cdmlib-apps): ref #6265 remove Description from Salvador taxa
Andreas Müller
11:10 AM Revision 0d3ee32e (cdmlib): cleanup
Andreas Müller
10:33 AM bug #6244: Sortindex problems in complex operations like swap synonym and accepted and others
This was part of the bugfix release as far as I remember Andreas Müller
09:42 AM bug #6296 (Resolved): Simple search for common names returns duplicates
Katja Luther
09:34 AM Revision c2c05353 (cdmlib): some code cleaning
Katja Luther

01/09/2017

11:11 PM feature request #3465: Function to copy secundum reference of a given taxon node to all it's chil...
Applied in changeset commit:cdmlib|06bf3273fe5580bb9201cb85fe829a18885a6942. Andreas Müller
11:11 PM Revision 06bf3273 (cdmlib): fix #3465 Progressmonitor API and better UpdateResult handling for se...
Andreas Müller
06:03 PM bug #6318 (Closed): Truncate TextData in FactualData View
Walter:
Hallo Andreas,
wir sind jetzt der Sache mit den angeblich verstümmelten Editorial Notes und Notes auf di...
Andreas Müller
04:11 PM bug #6317 (Resolved): LIE during request to portal/taxon/find.json
Applied in changeset commit:cdmlib|79902c85abf9675dbc9838a71327de7a54b53dd4. Andreas Kohlbecker
12:31 PM bug #6317 (Closed): LIE during request to portal/taxon/find.json

http://api.cybertaxonomy.org/salvador/portal/taxon/find.json?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1...
Andreas Kohlbecker
04:11 PM Revision 79902c85 (cdmlib): fix #6317 fixing LIE related to inReference author teams
Andreas Kohlbecker
03:54 PM Revision 88a2e4be (cdmlib): un-commenting test part
Andreas Kohlbecker
03:46 PM Revision d1382189 (cdmlib): ref #6296: minor
Katja Luther
03:39 PM Revision d841fb5d (cdmlib): ref #6296: minor
Katja Luther
03:29 PM bug #6296 (In Progress): Simple search for common names returns duplicates
With the test case mentioned in #6317 an exception is thrown:
~~~
2017-01-09 15:26:32.283:WARN:oejs.ServletHandle...
Andreas Kohlbecker
03:12 PM bug #6296 (Resolved): Simple search for common names returns duplicates
Applied in changeset commit:cdmlib|8311a989da231228857d6330f10d14286e93e6fe. Katja Luther
02:32 PM bug #6296: Simple search for common names returns duplicates
The commonNameSearch is now integrated into the taxa and synonym search query. Katja Luther
09:34 AM bug #6296: Simple search for common names returns duplicates
The method in question is
~~~java
Pager<IdentifiableEntity> eu.etaxonomy.cdm.api.service.TaxonServiceImpl.findT...
Andreas Kohlbecker
03:11 PM Revision 8311a989 (cdmlib): fix #6296: include the common name search into the search query of ta...
Katja Luther
11:36 AM feature request #6316: display source references of media objects in media page
In the media page the display of sources is missing. Andreas Kohlbecker
11:34 AM feature request #6316 (New): display source references of media objects in media page
* The sources should be an ordinary attribute here, not integrated in any footnote or annotation framework
* Conside...
Andreas Kohlbecker
11:29 AM Revision 1406bf5c (cdm-dataportal): multiple minor syntax problems
Andreas Kohlbecker

01/06/2017

12:20 AM Revision 721d9357 (cdmlib): cleanup
Andreas Müller
12:17 AM feature request #6315 (Feedback): Implement setSecundumForSubtree in TaxEditor
The functionality has been implemented in #3465
It needs to be called via taxon navigator right click menu. A conf...
Andreas Müller
12:06 AM feature request #3465 (Resolved): Function to copy secundum reference of a given taxon node to al...
Applied in changeset commit:cdmlib|d97ab2bfb82c496c37bbb0d7f9b45aae078288be. Andreas Müller
12:03 AM Revision d97ab2bf (cdmlib): fix #3465 implement setSecundumForSubtree
Andreas Müller
04:40 PM Revision 1738ed58 (taxeditor): fix #5488 show only zoological nomenclatural status types not for
botanical names
- also dis some refactoring
Patrick Plitzner
03:49 PM Revision 2443669b (taxeditor): fix #5495 DetailsView is emptied when upon context stop i.e. when the
connection is shut down Patrick Plitzner
02:38 PM feature request #5714 (Resolved): In Original Source Type dropdown show Primary Taxonomic Source ...
Applied in changeset commit:taxeditor|0c7c9656704a352a2bdfea434d6b703245177c65. Patrick Plitzner
02:36 PM Revision 0c7c9656 (taxeditor): fix #5714 Add possibility for adding a comparator to EnumComboElement
- for Sources always have PrimaryTaxonomicSource or PrimaryMediaSource
on top depending on IdentifiableSource
Patrick Plitzner
02:22 PM feature request #6203: Implement unplaced and excluded in dataportal
In the navigator of the editor the nodes are loaded step by step. Therefore it is difficult to move all excluded and ... Katja Luther
01:11 PM feature request #6314 (Closed): CDM light (csv) export implemented
(Editorial Workflow in Platform-Projekten)
Hallo Katja,
wie gesagt, bevor wir ernsthaft anfangen, mit mehreren Le...
Katja Luther
12:56 PM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigati...
Andreas Müller wrote:
> 3) too wide child boxes:
>
> seems to work now. On mobile it shows only 3 columns and the...
Andreas Müller
11:21 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigati...
3) too wide child boxes:
seems to work now. On mobile it shows only 3 columns and they can be scolled, though it i...
Andreas Müller
11:06 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigati...
A new issue (maybe existed before but I did not realize): if trying to move the scrollbar by pressing the mouse butto... Andreas Müller
11:00 AM feature request #5956 (Feedback): Improve functionality and UX for (children display in) breadcru...
mobile devices:
on my Samsung S5 I still have a couple of problems
* when trying to click on the last symbol (...
Andreas Müller
10:31 AM feature request #5956: Improve functionality and UX for (children display in) breadcrumb navigati...
Andreas Kohlbecker wrote:
> all issues solved except the transparency which needs to be discussed.
>
> I am not...
Andreas Müller
11:59 AM bug #6300: DataIntegrityViolationException when saving a type
das war wohl etwas zu kurz:
Ich habe bei der Type Designation nach der Specimen Suche und „New“ im Formular „Genera...
Katja Luther
11:58 AM feature request #5474 (Closed): TermEditor menu should be more structured
looks good. Katja Luther
11:08 AM feature request #5474 (Resolved): TermEditor menu should be more structured
Applied in changeset commit:taxeditor|60e722d086b2b60ceda788e4b1ef85fbe01d13e7. Patrick Plitzner
11:54 AM bug #6296: Simple search for common names returns duplicates
tested findByEverythingFullText(), but this works fine also with more than one common name starting with the same wor... Katja Luther
09:24 AM bug #6296: Simple search for common names returns duplicates
This is a problem in the lucene search, if a taxon has two common names starting with "amate" the lucene search retur... Katja Luther
11:42 AM bug #6115 (Feedback): protect cdm content by drupal permission
Seems to work, so we can close this ticket.
Only issue is that it is difficult to use so I wonder if we can't have...
Andreas Müller
11:08 AM Revision 60e722d0 (taxeditor): fix #5474 moved Feature and NamedArea to top level
- remaining terms are under "Other..." Patrick Plitzner
10:29 AM feature request #6313 (New): Improve browser functionality of breadcrumbs
Copied from #5852
An other issue to become a full replacement of the classification tree is, that browsing is more...
Andreas Müller
10:24 AM feature request #6312 (New): [DISCUSS] Remove transparency from breadcrumps
copied from #5852: remove transparency: the transparency makes it more difficult to read the list. But we need a way ... Andreas Müller
10:10 AM feature request #2985: Improve Specimen details display
I created some test data at http://test.e-taxonomy.eu/dataportal/preview/cyprus/cdm_dataportal/taxon/066e04d3-b586-4d... Andreas Müller
10:09 AM feature request #2985 (Feedback): Improve Specimen details display
1) works well
2a) works well in terms of area level being shown, but I wonder if the new Named Area page could not b...
Andreas Müller
08:59 AM bug #5698: Ampersand (&) is not shown in labels for NameRelationships in details view
Fixed this issue and also had a look at other labels. The fix was done generically in the LabelElement class so this ... Patrick Plitzner
08:56 AM bug #5698 (Resolved): Ampersand (&) is not shown in labels for NameRelationships in details view
Applied in changeset commit:taxeditor|4f22ac1d4e12311b019edf2f6c74337f7b4e243c. Patrick Plitzner
08:56 AM Revision 4f22ac1d (taxeditor): fix #5698 Duplicate ampersand to avoid conversion to mnemonic
Patrick Plitzner
08:41 AM feature request #5922: Change order in supplemental data view
I moved both sections to the bottom. The other solution is a bit more work and maybe not that necessary so I left it out Patrick Plitzner
08:40 AM feature request #5922 (Resolved): Change order in supplemental data view
Applied in changeset commit:taxeditor|ac2d218afe325b190be79a6a8e3fb145bd3cb241. Patrick Plitzner
08:39 AM Revision ac2d218a (taxeditor): fix #5922 Move credits and rights section to the bottom
Patrick Plitzner

01/05/2017

03:35 PM feature request #3465 (In Progress): Function to copy secundum reference of a given taxon node to...
This is probably a duplicate. Andreas Müller
03:24 PM task #4232: Check all Comparators for fulfilling the Comparator contract
Please report results of current effort and maybe check for new Comparators Andreas Müller
03:23 PM task #4232: Check all Comparators for fulfilling the Comparator contract
moved IdentifiableEntity.compareTo issue to new ticket #6311 Andreas Müller
03:22 PM bug #6311 (Rejected): Refactor IdentifiableEntity.compareTo method
The IdentifiableEntity.compareTo method needs to be updated.
First of all I added the test of equality of the uuid...
Andreas Müller
03:16 PM feature request #4570: Add vocabulary for Specimen Description Features
There might be a duplicate.
This issue will be discussed in the Additivity project.
Andreas Müller
02:56 PM bug #6300: DataIntegrityViolationException when saving a type
Maybe we can merge this ticket with a master ticket for duplicate entry issues. Andreas Müller
02:54 PM feature request #6305: [MASTER] Improve EDITOR import/export UI configuration panel for all impor...
we should create subtickets for each import Andreas Müller
01:52 PM feature request #5839: Improve error message when server can't be reached
Probably duplicate for #6209 Andreas Müller
01:28 PM feature request #6270: Feature Description, customized order, granular references
This is a complex issue with different solutions like IntextRefereces (#4719) (implemented in model but not in TaxEdi... Andreas Müller
01:01 PM feature request #6310 (New): second search block
Provide a second Search block, identical to the first one
> Die Konfiguration des Suchblocks müsste dann natürlic...
Andreas Kohlbecker
10:45 AM task #5285: Use Vaadin Spring Add-on
UPDATE:
Vaadin, the polyglot framework for building web apps with UI components, released version 1.1 of their Vaa...
Andreas Kohlbecker
10:29 AM bug #4945 (Feedback): Right click menu for polytomous key node list view needs correct enabling
Andreas Müller
10:26 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
Andreas Müller wrote:
> I tried to delete an in-between node answering the dialog if children should be deleted by "...
Andreas Müller
10:22 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
I tried to delete an in-between node answering the dialog if children should be deleted by "NO". This resulted in an ... Andreas Müller
10:20 AM bug #4945: Right click menu for polytomous key node list view needs correct enabling
Some issues:
* Refresh nodes is disabled if no selection, however, it probably always refreshes all nodes of the ke...
Andreas Müller
10:28 AM feature request #5841 (Closed): Creating a new alternative in PolytomousKey Editor should set foc...
Seems to work fine Andreas Müller

01/04/2017

12:11 AM bug #6209 (Feedback): NPE in DatasourceView
The error message is much better now. However, "Problem accessing remote server" is a very short message. We could ma... Andreas Müller
11:49 PM feature request #6050: provide the possibility to choose the fields of the simple details view fo...
Additionally there are layout and labeling issues
* No German translation
* (maybe functional) If "Show only a ...
Andreas Müller
11:36 PM feature request #6050 (Feedback): provide the possibility to choose the fields of the simple deta...
There are some functional issues:
* "Show appended phrase" can not be switched on
* "Show name relationship sec...
Andreas Müller
04:06 PM bug #6218 (Closed): NPE when editing term vocabulary label
Seems to be fixed Andreas Müller
03:08 PM Revision 9e550198 (taxeditor): fix #4821: create OrderedTermvoc for OrderedTerms
Katja Luther
02:34 PM bug #6309 (Closed): Creating an existing user throws exception
When creating a user with a username that does already exist throws an "unexpected error".
Instead an expected err...
Andreas Müller

01/03/2017

09:39 PM feature request #6308 (Resolved): Add configuration dialog for the deletion of synonyms in name e...
for the deletion of synonyms we also need a configuration dialog, similar to the deletion of taxa. Katja Luther
03:23 PM bug #6307 (Closed): Logfile/exception dialog should show connected datasource
Currently it shows information like
~~~
login : ki
editor version : 4.3.0
server : api.cybertaxonomy.org / cybe...
Andreas Müller
11:06 AM feature request #3573 (Closed): Improve EDITOR import UI configuration panel
Katja Luther
10:39 AM feature request #3573: Improve EDITOR import UI configuration panel
We should do this for all types of imports. Close this ticket and create a new one for the other imports, see #6305 Katja Luther
10:55 AM bug #6304 (In Progress): Deleting of Person used as user does not work
The isDeletable Method needs to be called. Katja Luther
10:38 AM feature request #6305 (New): [MASTER] Improve EDITOR import/export UI configuration panel for all...
see #3573
Master ticket for subtickets
Katja Luther
10:27 AM bug #4461 (Closed): Ordering in datasources view fails
works fine. Katja Luther
10:14 AM feature request #5971 (Closed): Implement database wide CdmPreference writing
this works now. Katja Luther
09:58 AM bug #6299 (Resolved): Error when deleting reference in bulk editor
Applied in changeset commit:cdmlib|82bf3f79c95b9d641ebd2528ca32c98a804c7019. Katja Luther
09:51 AM bug #6299: Error when deleting reference in bulk editor
This problem could be solved by catching the hibernate exception when there is no currentSession and create a new ses... Katja Luther
09:37 AM bug #6299: Error when deleting reference in bulk editor
I could reproduce the exception, following message is shown:
Could not obtain transaction-synchronized Session for...
Katja Luther
09:57 AM Revision 82bf3f79 (cdmlib): fix #6299: add openSession in getSession when there is no current se...
Katja Luther

12/23/2016

05:18 PM Revision 31092b58 (cdmlib-apps): minor
Andreas Müller
05:18 PM Revision acf4e805 (cdmlib-apps): ref #6286 first incomplete version of Flora Hellenica import
Andreas Müller
04:18 PM Revision b1fc732c (cdmlib-apps): ref #3934 latest changes to Salvador import
Andreas Müller
03:44 PM bug #6304 (Closed): Deleting of Person used as user does not work
A person that is referenced from the user class can not be deleted via bulk editor.
No exception is thrown but the u...
Andreas Müller
02:11 PM bug #6303 (Closed): distribution map is moving too fast
when trying to move the distribution map with the mouse it is moving too fast so I can't drag it to the point I'm loo... Gabriele Dröge
01:52 PM feature request #6302 (New): enable mouseover for distribution map
A mouseover for the distribution map would be very helpful (name of the area displayed). When adding multiple sources... Gabriele Dröge
11:45 AM feature request #6301 (Closed): Display of sources for images
Currently sources are not displayed for images in the dataportal. This is probably needed for Salvador and generally ... Andreas Müller

12/22/2016

04:07 PM bug #6300 (Closed): DataIntegrityViolationException when saving a type
Walter:
"Hallo,
habe eine Typusangabe in den Cache gestellt, beim Speichern des Taxons dann untenstehender Fehl...
Patrick Plitzner
04:02 PM bug #6299 (Feedback): Error when deleting reference in bulk editor
Henning:
Hallo zusammen,

die Meldung kam, als ich im BulkEditor (PhycoBank, production) „Testjournal“ lösche...
Patrick Plitzner
03:56 PM bug #6298 (New): Add delete button for areas for common names and for person in user
Walter:
" Bei den Areas gibt’s keinen Leereintrag und auch keinen Delete Knopf, ich bekomme also eine einmal ausgewä...
Patrick Plitzner
03:36 PM feature request #6288: harmonize CommonName feature block elements
I put the area and language label in one common span element which now has a different class attribute: `language-are... Andreas Kohlbecker
03:33 PM feature request #6288 (Resolved): harmonize CommonName feature block elements
Applied in changeset commit:cdm-dataportal|a20ddbc40ff8c0cd4ab5de022de3085606c2b512. Andreas Kohlbecker
03:33 PM Revision a20ddbc4 (cdm-dataportal): fix #6288 common names area and language label in one common ...
Andreas Kohlbecker
02:37 PM Revision c278f2a0 (cdm-dataportal): Fixing case of labels and adding spanisch translations
Andreas Kohlbecker
02:22 PM bug #6297: [Overview] BGBM User group wishes 2017
Hallo Andreas,
danke, nehme ich auf.
[Bin aber von der Lösung noch nicht so überzeugt, wenn ich das Ergebnis etw...
Andreas Müller
02:22 PM bug #6297 (New): [Overview] BGBM User group wishes 2017
For older tasks see #5595, #4585, #4031
* Footnotes (see comment below)
* Taxon annotations: #6192
* Original sp...
Andreas Müller
02:08 PM Revision 86ea4f4a (cdmlib-apps): ref #3934 latest changes to Salvador import
Andreas Müller
02:05 PM bug #6296 (Resolved): Simple search for common names returns duplicates
This is a bug the cdmlib-services
For example:
~~~
http -b http://api.cybertaxonomy.org/salvador/portal/taxon/...
Andreas Kohlbecker
12:04 PM bug #6295 (Closed): NPE when creating a new taxon
fixed with commit:taxeditor|cba60f25a0b26dbd884e94772d798e72ccf072e4. Patrick Plitzner
12:01 PM bug #6295 (Closed): NPE when creating a new taxon
Walter:
"Hallo,
ich habe aus Versehen einen Namen mit Literatur in die New Taxon Eingabe (aus dem Navigator auf...
Patrick Plitzner
11:09 AM Revision cba60f25 (taxeditor): Fix possible NPE
Patrick Plitzner

12/21/2016

06:47 PM bug #6290 (Closed): style Phycobank registration data in tabular style
Andreas Kohlbecker
06:39 PM bug #6290: style Phycobank registration data in tabular style
Table view is fine! Wolf-Henning Kusber
06:34 PM bug #6290: style Phycobank registration data in tabular style
Hi Henning this is fixed.
Please can you do the review to confirm that this meets the expectation?
Andreas Kohlbecker
06:32 PM bug #6290 (Resolved): style Phycobank registration data in tabular style
Applied in changeset commit:cdm-dataportal|cbdcd48adbb5d18997b56dfb90ad948b410af416. Andreas Kohlbecker
06:44 PM feature request #6292 (Closed): IAPT-Data Registration date
Fixed Andreas Kohlbecker
06:43 PM feature request #6292 (Resolved): IAPT-Data Registration date
Applied in changeset commit:cdm-dataportal|03c3b241326bfe7d67adf9600785460465154f03. Andreas Kohlbecker
06:43 PM Revision 03c3b241 (cdm-dataportal): fix #6292 adding century and decade to redistration date, and ..
fixing theme/layout bug Andreas Kohlbecker
06:31 PM Revision cbdcd48a (cdm-dataportal): fix #6290 Phycobank registration data as table
Andreas Kohlbecker
04:32 PM bug #6291 (Closed): allow hiding the classification information from the search results
Andreas Kohlbecker
04:31 PM bug #6291: allow hiding the classification information from the search results
The classifications detail can now be hidden by
~~~css
#search_results .classifications {
display: none;
}
~~~
Andreas Kohlbecker
04:31 PM bug #6291 (Resolved): allow hiding the classification information from the search results
Applied in changeset commit:cdm-dataportal|2813096fafb6deb9cd87e2541a4db0bca6e35a0b. Andreas Kohlbecker
04:31 PM Revision 2813096f (cdm-dataportal): fix #6291 search results: separator inside of classifications...
Andreas Kohlbecker
03:32 PM Revision 5de87f23 (cdm-dataportal): more spanish translations
Andreas Kohlbecker
09:14 AM Revision 79f00d65 (cdmlib-apps): Merge branch 'master' into noChecklistClone
Patrick Plitzner
08:53 AM Revision 8f3ec9d0 (cdm-dataportal): more spanish translations (Images)
Andreas Kohlbecker

12/20/2016

06:39 PM bug #6293 (New): Advanced search does not allow standard author abbreviations according to Brummi...
PhycoBank:
Use case: All records of the author Kützing, databased as Kütz.
*Kütz* gives all data back, *Kütz.* gi...
Wolf-Henning Kusber
06:23 PM feature request #6292 (Closed): IAPT-Data Registration date
In IAPT there are normally dates such as dd.mm.yy (dd.mm.yyyy is only used by Office Eghan=Index Fungorum, not releva... Wolf-Henning Kusber
05:37 PM bug #6291 (Closed): allow hiding the classification information from the search results
allow hiding the classification information from the search results when the search is not limited to one classification Andreas Kohlbecker
05:35 PM bug #6290 (Closed): style Phycobank registration data in tabular style
Either style the definition list like it is described in see http://stackoverflow.com/questions/1713048/how-to-style-... Andreas Kohlbecker
02:34 PM bug #6190 (Closed): remove svn property place holder in first line of code
Andreas Kohlbecker
02:29 PM Revision e15d2c8e (cdmlib): ref #6190 removing svn property place holder in first line of code - ...
Andreas Kohlbecker
02:29 PM Revision eb291d61 (cdm-vaadin): ref #6190 removing svn property place holder in first line of code
Andreas Kohlbecker
02:28 PM Revision ebc31cb0 (taxeditor): ref #6190 removing svn property place holder in first line of code...
Andreas Kohlbecker
02:22 PM Revision e3240965 (taxeditor): ref #6190 removing svn property place holder in first line of code...
Andreas Kohlbecker
02:18 PM Revision f6147a2a (cdm-dataportal): whitespace cleanup
Andreas Kohlbecker
01:16 PM Revision 68a19847 (cdmlib): minot
Katja Luther
01:03 PM Revision 23925b61 (taxeditor): missing changes
Katja Luther
01:02 PM Revision 7cbe2b56 (cdmlib): missing changes for repair methods and cdmPreferences in editor
Katja Luther
12:54 PM Revision ab553c7a (taxeditor): minor
Katja Luther
12:50 PM Revision 6c704323 (taxeditor): minor to fix failing jenkins
Katja Luther
11:54 AM Revision 8ec6cdfe (cdm-dataportal): ref #6190 removing svn property place holder in first line of...
Andreas Kohlbecker
11:53 AM Revision c2c69eb8 (cdmlib-apps): ref #6190 removing svn property place holder in first line of code
Andreas Kohlbecker
11:50 AM Revision 7b2a0df1 (cdm-vaadin): ref #6190 removing svn property place holder in first line of code
Andreas Kohlbecker
11:49 AM Revision d45008d0 (cdmlib): ref #6190 removing svn property place holder in first line of code
Andreas Kohlbecker
11:46 AM Revision f05fd10f (cdm-server): ref #6190 removing svn property place holder in first line of code
Andreas Kohlbecker
11:20 AM bug #6289 (Closed): “Back to images” link as “Back to taxon page” when in table-less mode
Andreas Kohlbecker
11:00 AM feature request #6288 (Closed): harmonize CommonName feature block elements
1. The area label should be in its own `span` dom element with class attribute `area-label`
1. ~~The area label and ...
Andreas Kohlbecker
10:15 AM Revision 7afb5232 (cdm-dataportal): fixing case in labels and translation
Andreas Kohlbecker

12/19/2016

04:17 PM Revision 696d86cd (cdm-server): ref #6287 removing useless RollingFileAppender logger
Andreas Kohlbecker
04:16 PM Revision fa39cfe4 (taxeditor): more changes for configurable name details view
Katja Luther
04:14 PM Revision d37de08a (taxeditor): adaptions for polytomous key editing to avoid null values in child...
Katja Luther
04:14 PM bug #6287: Rolling cdmserver.log file only contains entries from startup phase
The logging into files needs to be configured to jetty:
http://www.eclipse.org/jetty/documentation/current/confi...
Andreas Kohlbecker
04:05 PM bug #6287 (In Progress): Rolling cdmserver.log file only contains entries from startup phase
The last entry in the cdmserver.log always is:
~~~
... INFO [eu.etaxonomy.cdm.server.instance.CdmInstance] - life...
Andreas Kohlbecker
04:04 PM Revision 05030527 (taxeditor): ref #6105: add name details view configuration to the cdm preferen...
Katja Luther
03:58 PM Revision 5c9c924c (taxeditor): deduplicate the nomenclatural code preference page in preferences ...
Katja Luther
03:50 PM Revision 72aea936 (cdm-server): removing java 1.8 settings from IDE launcher
Andreas Kohlbecker
03:42 PM bug #2939: ehcache diskStore conflict?
I vote for putting this ticket into the 4.6 milestone Andreas Kohlbecker
03:17 PM feature request #6249 (Resolved): better logging strategy
Applied in changeset commit:cdmlib|f0cf14ebe5283f76a2dcf2134f0eb3aefab51e6f. Andreas Kohlbecker
03:17 PM Revision f0cf14eb (cdmlib): fix #6249 prefixig all logappender with instance (bean) name and disa...
Andreas Kohlbecker
10:23 AM task #6284: media.bgbm.org available via https
Dominik wrote:
----
Hallo Andreas,
das ist so einfach nicht machbar...
Ist ein Tomcat Server unter Window...
Andreas Kohlbecker

12/18/2016

12:12 AM feature request #6050 (Resolved): provide the possibility to choose the fields of the simple deta...
Andreas Müller
12:05 AM task #6137 (In Progress): Urgent imports
Andreas Müller
12:02 AM task #6286 (In Progress): Import Flora Hellenica
Andreas Müller
12:02 AM task #6286 (Resolved): Import Flora Hellenica
Import
* accepted taxa with distribution and some statuses
* synonym list including misapplications as "auct. ...
Andreas Müller
11:48 AM bug #6285 (New): select list for facts too long for laptop display
Can't scroll down when creating new fact on a laptop, see screenshot. Please reduce size of this selection list.
I...
Gabriele Dröge

12/16/2016

04:37 PM feature request #6275 (Closed): Phycobank - DataPortal: display registration data stored in name ...
Hi Henning,
the registration data is now visible: http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datap...
Andreas Kohlbecker
04:32 PM feature request #6275 (Resolved): Phycobank - DataPortal: display registration data stored in nam...
Applied in changeset commit:cdm-dataportal|270bb74883453db300b75625613f568e5241c125. Andreas Kohlbecker
03:35 PM feature request #6275 (In Progress): Phycobank - DataPortal: display registration data stored in ...
Andreas Kohlbecker
04:32 PM Revision 270bb748 (cdm-dataportal): fix #6275 implmenting phycobank module:
- preliminary block to show registration data Andreas Kohlbecker
03:28 PM bug #6192 (Feedback): taxon annotations only shown when 'Show accepted taxon on top of the synon...
Annotations on the accepted taxon are not necessarily only related to synonymy information. Therefore the according f... Andreas Kohlbecker
03:08 PM bug #6192 (In Progress): taxon annotations only shown when 'Show accepted taxon on top of the sy...
Andreas Kohlbecker
02:37 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
@ Andreas M.:
When reviewing you can take a look at http://test.e-taxonomy.eu/dataportal/preview/rubiaceae-mexico/...
Andreas Kohlbecker
02:14 PM feature request #4490 (Resolved): Make the label of the taxon page tabs customizable for portal a...
Applied in changeset commit:cdm-dataportal|4feeabc7eb75a09ab5a445413a4b6a3505c49e37. Andreas Kohlbecker
02:35 PM Revision 2a61a296 (cdm-dataportal): ref #4490 improving settings documentation
Andreas Kohlbecker
02:26 PM Revision ed0183ea (cdm-dataportal): ref #4490 cleaning up: removing theme registry entry
Andreas Kohlbecker
02:14 PM Revision 4feeabc7 (cdm-dataportal): fix #4490 taxon page tab labels configurable and fixing trans...
Andreas Kohlbecker
08:56 AM Revision 0cdfbe50 (cdm-webapp): fix #6256 building war only with cdmlib-*.jar files from cdm-remo...
Andreas Kohlbecker

12/15/2016

05:34 PM feature request #6278: add sec reference as class attribute to all taxon markup
implemented!
The taxa with the phycobank sec reference can be styled with the following css (for test database):
...
Andreas Kohlbecker
05:32 PM feature request #6278 (Resolved): add sec reference as class attribute to all taxon markup
Applied in changeset commit:cdm-dataportal|4b3be949345d1350fc13ff2e39a908f3c2e84a77. Andreas Kohlbecker
05:32 PM Revision 4b3be949 (cdm-dataportal): fix #6278 sec uuid and taxon uuid as class attribute to all t...
Andreas Kohlbecker
04:41 PM bug #6259: Media page problems with multiple media representations
please review Andreas Kohlbecker
04:40 PM bug #6259 (Resolved): Media page problems with multiple media representations
Applied in changeset commit:cdm-dataportal|a867b77477619b9ef73c8f5ef5c04613f6ec7e78. Andreas Kohlbecker
03:13 PM bug #6259 (In Progress): Media page problems with multiple media representations
Andreas Kohlbecker
04:40 PM Revision a867b774 (cdm-dataportal): fix #6259 solving multiple problems in the media page related...
Andreas Kohlbecker
03:12 PM bug #6260: media page: rights stored in the cdm are not displayed
done, please review. Andreas Kohlbecker
03:10 PM bug #6260 (Resolved): media page: rights stored in the cdm are not displayed
Applied in changeset commit:cdm-dataportal|daef68e94e5ad40fb7fb395f818822ee1ff3c5ee. Andreas Kohlbecker
03:10 PM Revision daef68e9 (cdm-dataportal): fix #6260 fixing display of rights on image page
Andreas Kohlbecker
02:29 PM bug #6281: delete synonym with annotations throws exception
this seems to be only a problem if the annotation is related to a synonym not if it is related to a taxon.
The exce...
Katja Luther
02:04 PM Revision 887cb9a0 (cdmlib): minor to fix the failing test
Katja Luther
01:28 PM bug #6268 (Resolved): descriptions missing in media service responses
Applied in changeset commit:cdmlib|2b4395edfa8bfe9cf7177d34edaa694416a1969f. Andreas Kohlbecker
01:28 PM Revision 2b4395ed (cdmlib): fix #6268 initializing decriptions of media entities for portal webse...
Andreas Kohlbecker
12:39 PM Revision d8cc12a4 (cdmlib): ref #6283: minor changes to fix exceptions in polytomous key editing
Katja Luther
12:09 PM bug #6261 (Resolved): NPE while processing /portal/media/{uuid}/sources in BaseController
Applied in changeset commit:cdmlib|a1765b1ac1036e1582a49691e5b3699fca3c5128. Andreas Kohlbecker
12:09 PM Revision a1765b1a (cdmlib): fix #6261 searching all superclasses for generic type arguments in ba...
Andreas Kohlbecker
11:41 AM bug #6224 (Closed): cdm-webapp is not using current version of cdmlib-remote-webapp.war
seems to be fixed Andreas Kohlbecker
11:32 AM task #6284 (New): media.bgbm.org available via https

https://media.bgbm.org/erez/cache/eRez%40EditWP6_photos_Lapsana_communis_A_01_jpg_d5760c1f305514ac.jpg
Andreas Kohlbecker
11:22 AM bug #6283: Exceptions when editing polytomous key
There where still some NPE caused by null values in children list of polytomouskey nodes. And sometimes a ConcurrentM... Katja Luther
11:09 AM bug #6283 (Closed): Exceptions when editing polytomous key
Hallo Katja,

ich habe mich dieses Jahr doch noch an neuen Schlüsseln versucht. Bei Orchis gab es ein paar Fehlerm...
Katja Luther
11:13 AM Revision 99c779dd (cdmlib): ref #6283: fix NPE exceptions caused by null values in children list
Katja Luther
09:14 AM bug #6282 (New): FSI image viewer not working with https

for example: https://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/5d65f017-0c23-43e4-888...
Andreas Kohlbecker
09:12 AM feature request #6110 (Closed): Use https for map service calls when the portal is access via https
The maps are working when accessing taxon pages via https Andreas Kohlbecker
 

Also available in: Atom

Add picture from clipboard (Maximum size: 40 MB)