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From 11/17/2016 to 12/16/2016

12/16/2016

04:37 PM feature request #6275 (Closed): Phycobank - DataPortal: display registration data stored in name ...
Hi Henning,
the registration data is now visible: http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_datap...
Andreas Kohlbecker
04:32 PM feature request #6275 (Resolved): Phycobank - DataPortal: display registration data stored in nam...
Applied in changeset commit:cdm-dataportal|270bb74883453db300b75625613f568e5241c125. Andreas Kohlbecker
03:35 PM feature request #6275 (In Progress): Phycobank - DataPortal: display registration data stored in ...
Andreas Kohlbecker
04:32 PM Revision 270bb748 (cdm-dataportal): fix #6275 implmenting phycobank module:
- preliminary block to show registration data Andreas Kohlbecker
03:28 PM bug #6192 (Feedback): taxon annotations only shown when 'Show accepted taxon on top of the synon...
Annotations on the accepted taxon are not necessarily only related to synonymy information. Therefore the according f... Andreas Kohlbecker
03:08 PM bug #6192 (In Progress): taxon annotations only shown when 'Show accepted taxon on top of the sy...
Andreas Kohlbecker
02:37 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
@ Andreas M.:
When reviewing you can take a look at http://test.e-taxonomy.eu/dataportal/preview/rubiaceae-mexico/...
Andreas Kohlbecker
02:14 PM feature request #4490 (Resolved): Make the label of the taxon page tabs customizable for portal a...
Applied in changeset commit:cdm-dataportal|4feeabc7eb75a09ab5a445413a4b6a3505c49e37. Andreas Kohlbecker
02:35 PM Revision 2a61a296 (cdm-dataportal): ref #4490 improving settings documentation
Andreas Kohlbecker
02:26 PM Revision ed0183ea (cdm-dataportal): ref #4490 cleaning up: removing theme registry entry
Andreas Kohlbecker
02:14 PM Revision 4feeabc7 (cdm-dataportal): fix #4490 taxon page tab labels configurable and fixing trans...
Andreas Kohlbecker
08:56 AM Revision 0cdfbe50 (cdm-webapp): fix #6256 building war only with cdmlib-*.jar files from cdm-remo...
Andreas Kohlbecker

12/15/2016

05:34 PM feature request #6278: add sec reference as class attribute to all taxon markup
implemented!
The taxa with the phycobank sec reference can be styled with the following css (for test database):
...
Andreas Kohlbecker
05:32 PM feature request #6278 (Resolved): add sec reference as class attribute to all taxon markup
Applied in changeset commit:cdm-dataportal|4b3be949345d1350fc13ff2e39a908f3c2e84a77. Andreas Kohlbecker
05:32 PM Revision 4b3be949 (cdm-dataportal): fix #6278 sec uuid and taxon uuid as class attribute to all t...
Andreas Kohlbecker
04:41 PM bug #6259: Media page problems with multiple media representations
please review Andreas Kohlbecker
04:40 PM bug #6259 (Resolved): Media page problems with multiple media representations
Applied in changeset commit:cdm-dataportal|a867b77477619b9ef73c8f5ef5c04613f6ec7e78. Andreas Kohlbecker
03:13 PM bug #6259 (In Progress): Media page problems with multiple media representations
Andreas Kohlbecker
04:40 PM Revision a867b774 (cdm-dataportal): fix #6259 solving multiple problems in the media page related...
Andreas Kohlbecker
03:12 PM bug #6260: media page: rights stored in the cdm are not displayed
done, please review. Andreas Kohlbecker
03:10 PM bug #6260 (Resolved): media page: rights stored in the cdm are not displayed
Applied in changeset commit:cdm-dataportal|daef68e94e5ad40fb7fb395f818822ee1ff3c5ee. Andreas Kohlbecker
03:10 PM Revision daef68e9 (cdm-dataportal): fix #6260 fixing display of rights on image page
Andreas Kohlbecker
02:29 PM bug #6281: delete synonym with annotations throws exception
this seems to be only a problem if the annotation is related to a synonym not if it is related to a taxon.
The exce...
Katja Luther
02:04 PM Revision 887cb9a0 (cdmlib): minor to fix the failing test
Katja Luther
01:28 PM bug #6268 (Resolved): descriptions missing in media service responses
Applied in changeset commit:cdmlib|2b4395edfa8bfe9cf7177d34edaa694416a1969f. Andreas Kohlbecker
01:28 PM Revision 2b4395ed (cdmlib): fix #6268 initializing decriptions of media entities for portal webse...
Andreas Kohlbecker
12:39 PM Revision d8cc12a4 (cdmlib): ref #6283: minor changes to fix exceptions in polytomous key editing
Katja Luther
12:09 PM bug #6261 (Resolved): NPE while processing /portal/media/{uuid}/sources in BaseController
Applied in changeset commit:cdmlib|a1765b1ac1036e1582a49691e5b3699fca3c5128. Andreas Kohlbecker
12:09 PM Revision a1765b1a (cdmlib): fix #6261 searching all superclasses for generic type arguments in ba...
Andreas Kohlbecker
11:41 AM bug #6224 (Closed): cdm-webapp is not using current version of cdmlib-remote-webapp.war
seems to be fixed Andreas Kohlbecker
11:32 AM task #6284 (New): media.bgbm.org available via https

https://media.bgbm.org/erez/cache/eRez%40EditWP6_photos_Lapsana_communis_A_01_jpg_d5760c1f305514ac.jpg
Andreas Kohlbecker
11:22 AM bug #6283: Exceptions when editing polytomous key
There where still some NPE caused by null values in children list of polytomouskey nodes. And sometimes a ConcurrentM... Katja Luther
11:09 AM bug #6283 (Closed): Exceptions when editing polytomous key
Hallo Katja,

ich habe mich dieses Jahr doch noch an neuen Schlüsseln versucht. Bei Orchis gab es ein paar Fehlerm...
Katja Luther
11:13 AM Revision 99c779dd (cdmlib): ref #6283: fix NPE exceptions caused by null values in children list
Katja Luther
09:14 AM bug #6282 (New): FSI image viewer not working with https

for example: https://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/5d65f017-0c23-43e4-888...
Andreas Kohlbecker
09:12 AM feature request #6110 (Closed): Use https for map service calls when the portal is access via https
The maps are working when accessing taxon pages via https Andreas Kohlbecker

12/14/2016

04:28 PM bug #6281 (Closed): delete synonym with annotations throws exception
Das Löschen von Synonymen geht zwar letztlich, aber es kommt immer zuerst eine Fehlermeldung (s.u.).
Nur wenn man di...
Katja Luther

12/13/2016

05:21 PM bug #6280 (New): data in taxon editor view and details are not refreshed when pressing F5
Situation: Data dhanges by a second user in another TaxEditor or in the database directly.
The only way to refresh...
Andreas Kohlbecker
04:32 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
this is crucial for the phycobank. Andreas Kohlbecker
04:23 PM feature request #6278 (Closed): add sec reference as class attribute to all taxon markup
This is needed to be able to style the taxa related to a specific scref differently. The taxa with the 'phycobank' se... Andreas Kohlbecker
02:52 PM bug #6276: Nomenclatural references show parsed date string instead of publication year
Hi Andreas,
this issue is important for us. We need at least an idea of why this is happening and if the nomencalt...
Andreas Kohlbecker
02:49 PM bug #6276 (New): Nomenclatural references show parsed date string instead of publication year

For example 'Staurastrum longebrachiatum var. quadrifidum (Grönblad) A.A.Gontsch.' in the phycobank database:
Th...
Andreas Kohlbecker
02:00 PM feature request #6275: Phycobank - DataPortal: display registration data stored in name extension
implement as phycobank module Andreas Kohlbecker
01:58 PM feature request #6275 (Closed): Phycobank - DataPortal: display registration data stored in name ...

show below Name and footnote as string as in IAPT
Andreas Kohlbecker
12:45 PM Revision 43d3d0b7 (cdmlib): minor
Katja Luther
12:25 PM Revision 33525203 (cdmlib): minor
Katja Luther
11:48 AM Revision 62d8efcf (cdmlib): extend biocase import
Katja Luther
11:46 AM Revision df89b529 (cdmlib): extend excel import for tropicos
Katja Luther

12/12/2016

02:58 PM Revision 6d4c1ca5 (cdm-dataportal): generalizing test assertion
Andreas Kohlbecker
02:27 PM bug #6274 (Resolved): add update of childrenCount cache in repair method
Applied in changeset commit:cdmlib|3977b110dd5f22387a52d4707607b4a3ecaebbec. Katja Luther
02:24 PM bug #6274 (Closed): add update of childrenCount cache in repair method
caused by the sortindex problem there are some childrenCount caches which are not correctly updated. Therefore we nee... Katja Luther
02:27 PM Revision 3977b110 (cdmlib): fix #6274: add an update for childrenCount cache if count of children...
Katja Luther
02:05 PM bug #6273 (New): Drag&Drop a classification on the rights editing form throws NPE
WHen trying to add a new right to a user group via the rights form (user group bulk editor, right click menu, edit ri... Andreas Müller
01:54 PM bug #6272 (New): Searching in user group bulk editor throws "unexpected error" if rights are not ...

Instead we should have a dialog saying that the user has no right to do the search.
I also wonder why the securi...
Andreas Müller
01:26 PM task #6271 (Duplicate): Move user and user groups from bulk editor menu to Admin menu
... and add a separator before Andreas Müller

12/11/2016

01:15 PM feature request #6270 (New): Feature Description, customized order, granular references
Requirement: Place References where important. http://dataportal.corvids.de/cdm_dataportal/taxon/6f4437d0-5d24-4419-a... Gabriele Dröge
08:04 AM feature request #5550 (In Progress): Add languages to the editable terms
DISCUSS: is it possible to add languages to the editable terms? Should we add ISO 639-5 languages before? Andreas Müller

12/10/2016

08:53 PM bug #6269 (Rejected): image vanished in portal
hmm, now it appears suddenly. Sorry, don't know what happened. Gabriele Dröge
08:48 PM bug #6269 (Rejected): image vanished in portal
I've changed the url of a specimen image (Feature->Specimen->Media) and in the EDITor the preview is displayed, but i... Gabriele Dröge

12/09/2016

04:20 PM bug #6268 (Closed): descriptions missing in media service responses
The description for media entities is missing:
http://portal.cybertaxonomy.org/salvador/cdm_dataportal/media/bc3c1...
Andreas Kohlbecker
03:37 PM bug #6267 (New): Name Relationship supplemental data not always editable
e.g the later homonym relationship from Coutarea latiflora DC. to Coutarea latiflora Sessé & Moc. ex DC. in Salvador... Andreas Müller
11:42 AM task #6263 (New): [DISCUSS] Should Credit be reusable
For discussion see also #5762.
How are Credits used currently? Are there many duplicates?
Andreas Müller
11:40 AM bug #6262 (Closed): Implement Rights reusable in TaxEditor
Since #5762 Rights are reusable. This is important e.g. for copyright statements for image where statements are used ... Andreas Müller
11:29 AM Revision ce155df5 (cdmlib): ref #5762 Rights to be reusable, still need to update existing unique
Andreas Müller
11:29 AM Revision 6ea78a24 (cdmlib): cleanup
Andreas Müller
11:29 AM Revision 3033ffb5 (cdmlib): ref #3934 add department to NamedAreaLevel
Andreas Müller
11:22 AM Revision c3a6a3bf (cdmlib-apps): ref #6252 and ref #3934 Improve image import, fix distribution i...
Andreas Müller
11:18 AM Revision 4dbe9763 (cdmlib): cleanup
Andreas Müller

12/08/2016

09:30 PM task #6252: Implement image import
should be fixed except for reusability of copyright #5762 Andreas Müller
09:23 PM Revision 23df441c (cdmlib-apps): ref #6252 improve salvador image import
Andreas Müller
09:21 PM Revision f7316ff3 (cdmlib-apps): ref #3937 Remove marker from salvador import
Andreas Müller
04:22 PM Revision aaf7e87c (cdmlib-apps): ref #6252 updates for salvador image import
Andreas Müller
04:18 PM Revision 46efdd16 (cdmlib): cleanup (including deprecated methods in Media)
Andreas Müller
04:17 PM Revision b32e0a74 (cdmlib-apps): ref #2937 start GermanSL import
Andreas Müller
04:16 PM Revision ccbc2c9f (cdmlib-apps): ref #3934 Add feature tree to SalvadorActivator
Andreas Müller
03:30 PM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is en...
This is important for the Salvador portal Andreas Müller
02:57 PM bug #6261 (Closed): NPE while processing /portal/media/{uuid}/sources in BaseController
http://api.cybertaxonomy.org/salvador/portal/media/9a650031-04cc-48dc-a68b-8d67350423d6/sources.json
strangely thi...
Andreas Kohlbecker
02:52 PM bug #6260 (Closed): media page: rights stored in the cdm are not displayed
Andreas Kohlbecker
02:51 PM bug #6259 (Closed): Media page problems with multiple media representations
Example: http://portal.cybertaxonomy.org/salvador/cdm_dataportal/media/9a650031-04cc-48dc-a68b-8d67350423d6/8bd66e44-... Andreas Kohlbecker
01:14 PM task #6258 (In Progress): Add Registration to cdm model
Andreas Müller
11:08 AM task #6258: Add Registration to cdm model
We also need a new Enum RegistrationStatus, with instances defined in #6168 Andreas Müller
10:04 AM task #6258: Add Registration to cdm model
For the Algea-Registry the model needs to be extended by a Registration class (for the detailed discussion see #6044)... Andreas Kohlbecker
09:59 AM task #6258 (Closed): Add Registration to cdm model
For the Algea-Registry the model needs to be extended by a Registration class (for the detailed discussion see #6044)... Andreas Kohlbecker
11:57 AM Revision 2c4452d9 (taxeditor): ref #4766: remove apply and restore defaults buttons
Katja Luther
11:34 AM Revision 6a3f4c50 (cdmlib): ref #4766: prepair the sortindex updater for calling via IOService
Katja Luther
11:31 AM Revision 1183a87f (taxeditor): ref #4766: sortindex updater integration in admin menu
Katja Luther
11:21 AM feature request #4766: Repair Methods for the cdm instance
we already have update methods for sortindex and titlecache. These functionality needs to be available via the admin ... Katja Luther
08:41 AM bug #6257 (Worksforme): incorrect SNAPSHOT version after HFX release in cdm-vaadin and cdm-webapp
The Jenkins jobs cdm-vaadin-HFX-FINISH and cdm-webapp-HFX-FINISH are missing to set the correct SNAPSHOT version. Thi... Andreas Kohlbecker

12/07/2016

04:59 PM Revision a436da65 (cdm-vaadin): fixing project version after HFX release to 4.5.0-SNAPSHOT
Andreas Kohlbecker
04:55 PM Revision 2b2ecff3 (cdm-webapp): fixing project version after HFX release to 4.5.0-SNAPSHOT
Andreas Kohlbecker
04:15 PM Revision d500e844 (cdm-webapp): Merge branch 'master' into develop
Conflicts:
pom.xml
jenkins
04:12 PM Revision 668a5d36 (cdm-webapp): Updating develop poms to hotfix version to avoid merge conflicts
jenkins
04:12 PM Revision 3859f13a (cdm-webapp): Merge branch 'hotfix/4.4.1'
jenkins
04:12 PM Revision 2d74c9fc (cdm-webapp): updating poms for branch'hotfix/4.4.1' with non-snapshot versions
jenkins
04:12 PM Revision db6b2bad (cdm-webapp): setting cdm-vaadin dependency to 4.4.1
Andreas Kohlbecker
04:01 PM Revision 2c97f202 (cdm-webapp): setting cdm-vaadin dependency to 4.4.1
Andreas Kohlbecker
03:44 PM Revision 47c400a7 (cdm-vaadin): Merge branch 'master' into develop
Conflicts:
pom.xml
jenkins
03:38 PM Revision 204f7fec (cdm-vaadin): Updating develop poms to hotfix version to avoid merge conflicts
jenkins
03:38 PM Revision 052554a3 (cdm-vaadin): Merge branch 'hotfix/4.4.1'
jenkins
03:35 PM Revision 761e6225 (cdm-vaadin): updating poms for branch'hotfix/4.4.1' with non-snapshot versions
jenkins
03:35 PM Revision 71db0d02 (cdm-vaadin): using cdmlib 4.4.1
Andreas Kohlbecker
03:18 PM Revision a8e0932e (cdm-vaadin): updating poms for 4.4.1 branch with snapshot versions
jenkins
03:03 PM Revision 432b7493 (cdmlib-apps): ref #6252 latest Salvador image import changes
Andreas Müller
03:01 PM Revision b08f6086 (cdmlib): Cleanup and new Rights Factory method
Andreas Müller
01:49 PM feature request #6254: multi-tenancy for cdmlib
Andreas Müller wrote:
> Static access to terms (and to any other resources?) must be removed before
could you lin...
Andreas Kohlbecker
01:13 PM feature request #6254: multi-tenancy for cdmlib
Static access to terms (and to any other resources?) must be removed before Andreas Müller
11:54 AM feature request #6254 (New): multi-tenancy for cdmlib
cdm-server consume a significant amount of RAM. This can be critical on servers where multiple cdm-remote instances a... Andreas Kohlbecker
01:46 PM Revision 31c3b8cc (cdm-server): Merge tag '4.4.1' into develop
release tag 4.4.1
Conflicts:
pom.xml
jenkins
01:43 PM Revision 52709ddc (cdm-server): Merge branch 'hotfix/4.4.1'
jenkins
01:41 PM Revision 3be7d797 (cdm-server): manually pumping to release version 4.4.1
jenkins
01:28 PM bug #6255 (Closed): jenkins job cdm-webapp-HFX-FINISH fails due to merge conflict
jenkins job cdm-webapp-HFX-FINISH fails due to merge conflict on merging master back to develop. The conflict occurs ... Andreas Kohlbecker
01:26 PM Revision cf36df3f (taxeditor): Merge branch 'hotfix/4.4.1' into develop
jenkins
01:26 PM Revision 467ce1d9 (taxeditor): Merge branch 'hotfix/4.4.1'
jenkins
01:21 PM Revision 137111b0 (cdm-webapp): Merge branch 'master' into develop
Conflicts:
pom.xml
jenkins
12:07 PM Revision f1d4d10b (cdm-webapp): Updating develop poms to hotfix version to avoid merge conflicts
jenkins
12:07 PM Revision 6e27b955 (cdm-webapp): Merge branch 'hotfix/4.4.1'
jenkins
12:07 PM Revision 65cd45b3 (cdm-webapp): updating poms for branch'hotfix/4.4.1' with non-snapshot versions
jenkins
12:00 PM Revision 179e8c79 (cdmlib): Updating develop poms back to pre merge state
jenkins
12:00 PM Revision 30ca59d9 (cdmlib): Updating develop poms to hotfix version to avoid merge conflicts
jenkins
12:00 PM Revision 3d77e236 (cdmlib): Merge branch 'master' into develop
jenkins
12:00 PM Revision fcb4de15 (cdmlib): Merge branch 'hotfix/4.4.1'
jenkins
11:44 AM Revision 602d4d2b (cdmlib): updating poms for branch'hotfix/4.4.1' with non-snapshot versions
jenkins
10:08 AM bug #6253 (New): hierarchic distributions: suppress label suffix when there are no children
in issue #2988 it was pointed out that the 'label suffix' needs to be suppressed when there are no children.
Is th...
Andreas Kohlbecker

12/06/2016

05:54 PM task #6252 (In Progress): Implement image import
Andreas Müller
05:53 PM task #6252 (In Progress): Implement image import
Media should be created from fig nr. information in according fact field.
After this Excel import needs to be writ...
Andreas Müller
05:31 PM bug #6251 (New): Add references to Vaadin Distribution Editor
It should be easy to add a reference (source) to the distribution status edited with Vaadin Editor.
We need a fiel...
Andreas Müller
05:24 PM bug #6250 (New): bbox transformation for EPSG:900913 layers from the edit mapservice responses is...
symptom: EPSG:900913 maps like Google Satellite are not being zoomed to the bbox as calculated by the EDIT map servic... Andreas Kohlbecker
05:11 PM feature request #6249 (Closed): better logging strategy
The cdmlib-remote instances in a cdm-server should not create individual logs per instance. It is more suitable if al... Andreas Kohlbecker
04:33 PM bug #3226 (Closed): openlayers map google baselayers: api keys rejected
Gabriele Dröge wrote:
> Am I doing something wrong?
You added your google api key with a trailing whitespace. Aft...
Andreas Kohlbecker
03:40 PM Revision 13834394 (taxeditor): Updated version in pom / project files to taxeditor version : 4.4....
jenkins
03:39 PM Revision 33d1fcfb (cdm-server): updating poms for 4.4.1 branch with snapshot versions
jenkins
03:32 PM Revision ca5baa02 (cdm-webapp): jenkins bumping cdmlib.version to 4.4.1
jenkins
03:31 PM Revision a78324a9 (cdm-webapp): updating poms for 4.4.1 branch with snapshot versions
jenkins
03:21 PM Revision d7c9d360 (cdmlib): ref #6248 disabling authorization restriction on /manage/ as temp wor...
Andreas Kohlbecker
03:19 PM bug #6248 (Closed): allow machine clients to access /manage/* OAuth2 protected web services
The creation of the lucene indexes can not be triggered from Jenkins jobs or from the dataportal settings pages, sinc... Andreas Kohlbecker
02:17 PM bug #6247 (Rejected): Check if concept relationships are correctly implemented in Gefäßpflanzenim...
Andreas Müller
01:25 PM feature request #5088 (Feedback): Redirect automatically to according page when search result has...
I don't know why this has still status "Rejected" though I changed it 4 month ago to "Feedback". Trying again Andreas Müller
12:15 PM bug #6245 (New): servlet context reports error after automatic update has run
This phenomenon occurs always on the production server. On the first run of a new version of the cdmserver the databa... Andreas Kohlbecker
11:38 AM Revision fcd142d1 (cdmlib): fix #6244: add removeNullValues in updateSortindex method to avoid ex...
Katja Luther
11:32 AM Revision e6358dcb (cdmlib): updating poms for 4.4.1 branch with snapshot versions
jenkins
10:26 AM bug #6244 (Resolved): Sortindex problems in complex operations like swap synonym and accepted and...
Applied in changeset commit:cdmlib|6e7001423c0758a35b20a1fafd87979e897e67f8. Katja Luther
09:57 AM bug #6244: Sortindex problems in complex operations like swap synonym and accepted and others
The problems seem to be caused by the call of updateSortindex when the collection contains null values. Then the meth... Katja Luther
09:07 AM bug #6244 (Closed): Sortindex problems in complex operations like swap synonym and accepted and o...
Norbert hatte gerade ein Problem. Er hat bei einer Subspezies diese zuerste mit einem Synonym (einer Spezies) getausc... Katja Luther
10:26 AM Revision 6e700142 (cdmlib): fix #6244: add removeNullValues in updateSortindex method to avoid ex...
Katja Luther
09:26 AM feature request #6243: Use a mock service for testing the loading of associated units in ABCD imp...
Mockservicees, guter Punkt!
Der einfachste mockservice überhaupt ist eine URI einer Test-Resource die der Classlo...
Andreas Kohlbecker
09:03 AM feature request #6243 (New): Use a mock service for testing the loading of associated units in AB...
In IO we do not want to have dependencies to external services, but for testing the ABCD import we also need to test ... Katja Luther

12/05/2016

08:57 PM bug #6077: Import of gathering images
Can you please add a changeset Andreas Müller
08:49 PM bug #6210: Null values for boolean fields are causing PropertyAccessException
Remove target version as it was a temporary issue and belongs to #5974 Andreas Müller
04:23 PM Revision 53770a14 (cdm-server): Merge branch 'release/4.4.0' into develop
jenkins
04:23 PM Revision 275059fe (cdm-server): updating poms for branch'release/4.4.0' with non-snapshot versions
jenkins
04:22 PM Revision 2607a3ca (cdm-webapp): Merge branch 'release/4.4.0' into develop
jenkins
04:22 PM Revision 2c19906c (cdm-webapp): updating poms for branch'release/4.4.0' with non-snapshot versions
jenkins
04:22 PM Revision bdbeddcc (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.4.0
jenkins
04:21 PM Revision 268feda7 (cdm-vaadin): Merge branch 'release/4.4.0' into develop
jenkins
04:21 PM Revision 884a8f88 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
04:19 PM Revision 069047f4 (cdm-vaadin): updating poms for branch'release/4.4.0' with non-snapshot versions
jenkins
04:19 PM Revision 6a822201 (cdm-vaadin): jenkins bumping cdmlib.version to 4.4.0
jenkins
04:19 PM Revision e5ff56fb (cdm-dataportal): Merge branch 'release/4.4.0' into develop
jenkins
04:19 PM Revision a61b2502 (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
jenkins
04:19 PM Revision 5aae0c96 (cdm-dataportal): updating poms for branch'release/4.4.0' with non-snapshot ver...
jenkins
04:19 PM Revision 8a4cface (cdm-dataportal): release-preparation: production level css
jenkins
04:19 PM Revision 47596c87 (taxeditor): Merge branch 'release/4.4.0' into develop
jenkins
04:19 PM Revision d2f3794a (taxeditor): Merge branch 'release/4.4.0'
jenkins
04:18 PM Revision 30ae7ce0 (cdmlib): Updating develop poms back to pre merge state
jenkins
04:18 PM Revision 714c6783 (cdmlib): Merge branch 'master' into develop
jenkins
04:18 PM Revision d77482d2 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
04:17 PM Revision a31759ed (cdmlib): Merge branch 'release/4.4.0'
jenkins
03:58 PM Revision 5009750d (cdmlib): updating poms for branch'release/4.4.0' with non-snapshot versions
jenkins
03:55 PM bug #6241: fix java doc problems in projects
Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > A solution might be to replace all "* @date " by "* @since "
...
Andreas Müller
03:50 PM bug #6241: fix java doc problems in projects
Andreas Müller wrote:
> A solution might be to replace all "* @date " by "* @since "
The doc says the since text ...
Andreas Kohlbecker
03:44 PM bug #6241: fix java doc problems in projects
A solution might be to replace all "* @date " by "* @since " Andreas Müller
12:49 PM bug #6241 (Feedback): fix java doc problems in projects
javadoc problems exist in the following projects and should be fixed (see also #6240 this is not a duplicate!). The r... Andreas Kohlbecker
03:50 PM Revision 8aab0fb1 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.4.0-SN...
jenkins
03:50 PM Revision 7a7041f2 (cdm-webapp): updating poms for 4.5.0-SNAPSHOT development
jenkins
03:50 PM Revision bce9439d (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.5.0-SN...
jenkins
03:50 PM Revision a25a0a15 (taxeditor): Updated version in pom / project files to taxeditor version : 4.5....
jenkins
03:50 PM Revision 2b99aa56 (taxeditor): Updated version in pom / project files to taxeditor version : 4.4....
jenkins
03:49 PM Revision b663adda (cdm-server): updating poms for 4.5.0-SNAPSHOT development
jenkins
03:47 PM Revision f4df4599 (cdm-vaadin): jenkins bumping cdmlib.version to 4.4.0-SNAPSHOT
jenkins
03:47 PM Revision b3650bfd (cdm-vaadin): updating poms for 4.5.0-SNAPSHOT development
jenkins
03:47 PM Revision 9db9e4e4 (cdm-vaadin): jenkins bumping cdmlib.version to 4.5.0-SNAPSHOT
jenkins
03:45 PM Revision a356e4a1 (cdmlib): updating poms for 4.5.0-SNAPSHOT development
jenkins
03:10 PM Revision b139097d (cdm-vaadin): fix #6240 disabling doclint in javadoc for jdk.8
Andreas Kohlbecker
03:08 PM bug #6194 (Duplicate): can't enter a new reference from feature data (Faktendaten)
this is a duplicate for #6178 Katja Luther
02:55 PM Revision 503d9f4c (cdmlib): fix SortIndexUpdater bug for missing @id replacement
Andreas Müller
01:59 PM Revision 080a18fc (cdmlib): fix SortIndexUpdater bug for missing @id replacement
Andreas Müller
01:39 PM Revision 00ad9218 (taxeditor): Merge branch 'release/4.4.0' into develop
jenkins
01:39 PM Revision f9e66bad (taxeditor): Merge branch 'release/4.4.0'
jenkins
01:19 PM Revision ac8a3308 (cdm-webapp): Merge branch 'release/4.4.0' into develop
jenkins
01:19 PM Revision 5a6e0b6b (cdm-webapp): updating poms for branch'release/4.4.0' with non-snapshot versions
jenkins
01:19 PM Revision 1f011efd (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.4.0
jenkins
01:18 PM Revision 4bb89689 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
01:17 PM Revision 2ce35ad5 (cdm-vaadin): updating poms for branch'release/4.4.0' with non-snapshot versions
jenkins
01:17 PM Revision 3870a9a1 (cdm-vaadin): jenkins bumping cdmlib.version to 4.4.0
jenkins
01:16 PM bug #6240 (Resolved): maven javadoc plugin fails with java 1.8
Applied in changeset commit:cdm-vaadin|31adf9f4302833188ad46a6a325120ae62ad05cb. Andreas Kohlbecker
12:47 PM bug #6240 (Closed): maven javadoc plugin fails with java 1.8
the maven javadoc plugin fails with java 1.8
this occurred firstly in the cdm-vaadin-RLS-FINISH jenkins job an was...
Andreas Kohlbecker
01:16 PM Revision 31adf9f4 (cdm-vaadin): fix #6240 disabling doclint in javadoc for jdk.8
Andreas Kohlbecker
01:02 PM bug #3226: openlayers map google baselayers: api keys rejected
Probably I'm too stupid.
I'm at the test portal, entered the google api key. I selected one of the google maps, bu...
Gabriele Dröge
11:59 AM Revision 61c55463 (cdm-vaadin): jenkins bumping cdmlib.version to 4.4.0
jenkins
11:26 AM Revision 54aa3c87 (cdmlib): Updating develop poms back to pre merge state
jenkins
11:26 AM Revision ef898886 (cdmlib): Merge branch 'master' into develop
jenkins
11:26 AM Revision f337bbf0 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
11:26 AM Revision 1fdbd7a6 (cdmlib): Merge branch 'release/4.4.0'
jenkins
11:13 AM Revision ba9894a5 (cdmlib-apps): update cdmlib-apps pom version
Andreas Müller
11:10 AM Revision eca94139 (cdmlib): updating poms for branch'release/4.4.0' with non-snapshot versions
jenkins
10:55 AM Revision 8c81c048 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.4.0-SN...
jenkins
10:55 AM Revision 1ca4fce0 (cdm-webapp): updating poms for 4.5.0-SNAPSHOT development
jenkins
10:55 AM Revision 7ab9105e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.5.0-SN...
jenkins
10:55 AM Revision 7cde2526 (taxeditor): Updated version in pom / project files to taxeditor version : 4.5....
jenkins
10:55 AM Revision 7bb0ef81 (taxeditor): Updated version in pom / project files to taxeditor version : 4.4....
jenkins
10:54 AM Revision c4b9aa67 (cdm-dataportal): updating poms for 4.5.0-SNAPSHOT development
jenkins
10:52 AM Revision 71d200df (cdm-vaadin): jenkins bumping cdmlib.version to 4.4.0-SNAPSHOT
jenkins
10:52 AM Revision 8d35ca12 (cdm-vaadin): updating poms for 4.5.0-SNAPSHOT development
jenkins
10:52 AM Revision b1daf2bc (cdm-vaadin): jenkins bumping cdmlib.version to 4.5.0-SNAPSHOT
jenkins
10:50 AM Revision 628e5804 (cdmlib): updating poms for 4.5.0-SNAPSHOT development
jenkins
10:42 AM bug #6218 (Resolved): NPE when editing term vocabulary label
Applied in changeset commit:taxeditor|d57cedd1bd3ee417373720f6e40036c13d79a5e4. Katja Luther
10:42 AM Revision d57cedd1 (taxeditor): fix #6218: avoid NPE when remove text from label field
Katja Luther
10:33 AM bug #6072: Implement getTaxonomicGroups for Edaphobase
includeEntity=true should now be fixed Andreas Müller
09:48 AM feature request #4594: RL Webservice 7: Return taxa by Identifier
Missing includeEntity is fixed. I think we can close this ticket. If there are further open issues we may open anothe... Andreas Müller
09:43 AM feature request #4594 (Resolved): RL Webservice 7: Return taxa by Identifier
Applied in changeset commit:cdmlib|8acdc0b7d98692ee721bf18cb23fa24b2de8b001. Andreas Müller
09:43 AM Revision 8acdc0b7 (cdmlib): fix #4594 fix includeEntity issue for findByMarker and findByIdentifi...
Andreas Müller
09:06 AM feature request #6238 (Resolved): add name of sec reference to display of concept relations in po...
Hi Gabi,
I enabled the sec reference display in your portal for the whole synonymy. The according settings are fou...
Andreas Kohlbecker
09:06 AM feature request #6239 (New): Optional header for taxon concept section in synbbnonymy
copied from #6238
Add a header before the concept relation part e.g. "Concept relations"
Example: http://da...
Andreas Kohlbecker
08:13 AM task #6135 (Resolved): Remove authors from Taxonomische Großgruppe
Applied in changeset commit:cdmlib|077e258beb50580d0a341c21a13f61927aad88e7. Andreas Müller
08:11 AM Revision 077e258b (cdmlib): fix #6135 allow nameCache for merked taxa search
Andreas Müller

12/03/2016

03:38 PM feature request #6238 (Resolved): add name of sec reference to display of concept relations in po...
1. Name of sec reference/referenced classification is not displayed for concept relations
2. Add a header before the...
Gabriele Dröge

12/02/2016

11:08 PM Revision 7f0410e9 (cdmlib): cleanup
Andreas Müller
10:12 PM bug #6236 (Resolved): Add alphabetic length ordering in name search
Applied in changeset commit:cdmlib|57ef2f9d9b15136e86c3ef0ceb53fe0c70791303. Andreas Müller
10:13 AM bug #6236 (Closed): Add alphabetic length ordering in name search
Wir wollen immer nur die ersten 10 Treffer in einer Combobox anzeigen. Dafür wäre eine längenlexiographische Sortieru... Andreas Müller
10:12 PM Revision 57ef2f9d (cdmlib): fix #6236 add alphabetic length ordering to name search
Andreas Müller
04:49 PM Revision 39811603 (cdmlib): ref #6128 fix null value bug for includeAuthorship
Andreas Müller
04:31 PM feature request #6134 (Resolved): Allow grouping by Taxonomische Großgruppe
Applied in changeset commit:cdmlib|e3fc5af3c712b705d2c5b4ee36b9334cedd1e710. Andreas Müller
04:31 PM Revision e3fc5af3 (cdmlib): fix #6134 add group taxa by marker and refactor treeindex handling
Andreas Müller
04:27 PM Revision 9c4f03a5 (cdmlib): Cleanup
Andreas Müller
04:07 PM feature request #5956 (Resolved): Improve functionality and UX for (children display in) breadcru...
all issues solved except the transparency which needs to be discussed.
I am not sure if the caveats mentioned in...
Andreas Kohlbecker
04:01 PM Revision e03a7102 (cdm-dataportal): ref #5956 classification breadcrumb navigation for mobiles fixed
Andreas Kohlbecker
03:42 PM Revision 53c705d4 (cdm-dataportal): ref #5956 improving classification breadcrumb navigation
- avoiding boxes that are not being closed on mouse out third part Andreas Kohlbecker
03:20 PM bug #6237 (New): Make TreeIndex a hibernate user type
see eu.etaxonomy.cdm.model.common.TreeIndex Andreas Müller
02:36 PM Revision 583ec5f9 (cdm-webapp): updating maven wagin extensions to 2.10
Andreas Kohlbecker
02:08 PM Revision 274ff13f (cdm-dataportal): ref #5956 improving classification breadcrumb navigation
- avoiding boxes that are not being closed on mouse out second part
- fixing loading animation
Andreas Kohlbecker
01:48 PM Revision 52221e05 (cdmlib): fix failing test
Katja Luther
10:42 AM Revision 69fb3dbb (cdm-dataportal): ref #5956 improving classification breadcrumb nav
- avoiding boxes that are not being closed on mouse out
- more consistent UI by adding ... as trigger for the last ...
Andreas Kohlbecker
10:16 AM feature request #6128 (Resolved): Include authorship in taxon search web service
Applied in changeset commit:cdmlib|05c87b7501b0737b129f4fb5769b56b4c135009c. Andreas Müller
10:11 AM Revision 05c87b75 (cdmlib): fix #6128 include authorship option in taxon and name search
Andreas Müller
10:04 AM Revision f08f6894 (cdmlib): Cleanup and replace int by long in count
Andreas Müller
08:33 AM bug #6235 (Rejected): page duplication when accessing resticted content
This is not a problem in the code. The observed effect was caused by pending updates for the cdm_dataportal module an... Andreas Kohlbecker

12/01/2016

12:53 AM Revision cbae39d4 (cdmlib): fix #6132 first implementation of parent taxon in TaxonInContextDTO
Andreas Müller
05:42 PM bug #6235 (Rejected): page duplication when accessing resticted content
At least in the flora-cuba portal there is strange effect when accessing a taxon page without sufficient permissions.... Andreas Kohlbecker
04:57 PM feature request #6110: Use https for map service calls when the portal is access via https
cannot test until the test portals are running under https Andreas Kohlbecker
04:54 PM bug #6114 (Closed): Regression of #4379: Citations only consist of footnotes if bibliography bloc...
Andreas Kohlbecker
04:51 PM task #6003 (Closed): Cleanup redmine users
Andreas Kohlbecker
04:50 PM bug #4965 (Closed): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUp...
Andreas Kohlbecker
04:38 PM bug #6234 (New): Unavailable server creates infinite exception loop
while the server was down I got a infinite loop of exception dialogs. Pressing OK created a new dialog.
~~~
org.s...
Andreas Müller
04:34 PM bug #6220: Improve definition of orphaned taxon and synonym
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > The open in works correctly now. The wro...
Andreas Müller
04:28 PM feature request #6058 (Closed): Store NamedArea dialog filters more individually
Andreas Müller
04:28 PM feature request #6058: Store NamedArea dialog filters more individually
Open issues moved to new ticket #6233 Andreas Müller
04:26 PM bug #6233 (New): Open issues for individual dialog filters
Copied from #6058:
1) All Area lists like (geoscope in classification or PolytomousKey) seem to handle "Add" and "...
Andreas Müller
04:14 PM feature request #6232 (New): secure OAuth2 grant types 'implicit' or 'password' by TSL/SSL.
for details see #6118 Andreas Kohlbecker
04:13 PM task #6118 (Closed): evaluate spring-security-auth2 and spring-cloud-security as a framework for ...
Andreas Kohlbecker
04:02 PM Revision 5de23116 (taxeditor): fix #5971 fix NPE for not existing preference
Andreas Müller
04:01 PM feature request #5971: Implement database wide CdmPreference writing
If no CdmPreference exists yet for nomenclatural code an NPE is thrown:
~~~
login : admin
editor version : 4.4.0...
Andreas Müller
03:46 PM Revision 5e027f1f (taxeditor): cleanup
Andreas Müller
03:42 PM Revision e6d7607d (cdmlib): add getIdentifierType to IO Transformers
Andreas Müller
03:41 PM Revision 4106cf43 (cdmlib): Cleanup
Andreas Müller
03:38 PM Revision 26cb69af (taxeditor): ref #6199 Move "open in editor" option to the bottom
Patrick Plitzner
03:06 PM bug #6160 (Rejected): Add preservation method and stage as sub class to DefinedTerm
We have to refactor the preference classes to use TermType instead of the Term class -> close as rejected Patrick Plitzner
03:02 PM bug #5862 (Closed): Spring needs online resources during launch
Works now Patrick Plitzner
02:46 PM bug #6231 (Worksforme): Correctly handle failed term deletions in the editor
Deletion of MarkerType is prevented at the persistence level, but the MarkerType is deleted from the session in the e... Andreas Kohlbecker
02:43 PM bug #5104 (Closed): prevent MarkerTypes from being deleted when there are Marker entities using t...
Deletion is prevented at the persistence level, but the MarkerType is deleted from the session in the editor. That is... Andreas Kohlbecker
02:32 PM feature request #4866 (In Progress): Implement clone method for complete classifications
This is partly and only needs review and probably some improvements. Andreas Müller
02:31 PM feature request #4867 (In Progress): Add menu item for classification cloning
This is partly done and is an experimental feature currently. Andreas Müller
02:26 PM feature request #3994 (Closed): Select widget to choose the filter areas for the advanced search
Andreas Kohlbecker
02:18 PM Revision 07380839 (cdmlib): Revert "updating poms for 4.5.0-SNAPSHOT development"
This reverts commit 9ff0eb6731c1b854d6bea082b5bd87e001b202bd. Andreas Kohlbecker
01:31 PM Revision 7890f10b (cdmlib): reverting version to 4.4.0-SNAPSHOT
Andreas Kohlbecker
01:30 PM Revision 381b3519 (cdmlib): ref #2985 portal controller for named areas
Andreas Kohlbecker
01:20 PM Revision 9ff0eb67 (cdmlib): updating poms for 4.5.0-SNAPSHOT development
jenkins
01:07 PM bug #6230 (New): harmonize specimen page implementation and harmonize with drupal coding conventions
1. The specimen page implementation is not using the cdm node api, please harmonize. You can use the named_area page ... Andreas Kohlbecker
12:57 PM feature request #2985 (Resolved): Improve Specimen details display
Andreas M: please review Andreas Kohlbecker
12:56 PM Revision 30845bda (cdm-dataportal): ref #2985 implementing named area page to make area details l...
Andreas Kohlbecker
11:55 AM Revision d6c025ed (taxeditor): add missing files
Katja Luther
11:42 AM Revision 2f53d13b (cdmlib): ref #2985 fixing init strategy to add the gateringEvent.collectingAreas
Andreas Kohlbecker
09:29 AM Revision c21b0186 (cdmlib-apps): Merge branch 'master' into noChecklistClone
# Conflicts:
# app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/RedListGefaesspflanzenImportFamil...
Patrick Plitzner
09:14 AM Revision d70c528d (taxeditor): avoid NPE when reusing taxonname for taxon creation
Katja Luther
09:09 AM Revision ccce957a (cdmlib-apps): ref #5448 Correctly set sec reference on synonyms and avoid for
misapplied names Patrick Plitzner

11/30/2016

06:41 PM Revision 4ce9478d (cdmlib): ref #2985 controller method to return extensions with type and solvin...
Andreas Kohlbecker
06:40 PM Revision 0820cdc0 (cdm-dataportal): ref #2985 output of extensions implemented generically and fo...
Andreas Kohlbecker
05:06 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
Before we close this there is one remaining issue:
Please move the "Open in Editor Check box down to the very bott...
Andreas Müller
05:03 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
The open issues are general multi-language editor issues handled in a new ticket #6228. Andreas Müller
12:58 PM bug #6229 (New): Implement multi-language support for MultiLanguage textes everywhere
Currently only a view multi-language attributes are really supported by the Editor. These are TextData.multilanguageT... Andreas Müller
11:58 AM bug #6228 (New): Fix behavior of multi-language editing
As realized in #6199 multi-language editing does not work correctly yet.
Adding >2 languages, deletes one of the old...
Andreas Müller
10:49 AM feature request #2985: Improve Specimen details display
Andreas Kohlbecker wrote:
> Hi Andreas M.
>
> the the original ticket you wrote:
>
> > additional areas should...
Andreas Müller
10:21 AM feature request #2985: Improve Specimen details display
Hi Andreas M.
the the original ticket you wrote:
> additional areas should be shown with the area level such as...
Andreas Kohlbecker
10:08 AM Revision f600b948 (cdmlib-apps): ref #5448 Fix saving of imported families
Patrick Plitzner
10:08 AM Revision d5520157 (cdmlib-apps): ref #5448 Import additional information as extension instead of
annotations Patrick Plitzner

11/29/2016

06:01 PM Revision 5a079dbf (cdm-dataportal): ref #2985 units in min max measures only at the end and after...
Andreas Kohlbecker
06:00 PM feature request #2985 (In Progress): Improve Specimen details display
Andreas Kohlbecker
05:42 PM Revision 17e693bd (cdmlib-apps): Avoid cloning taxa for checklist classification
Patrick Plitzner
05:17 PM bug #6227 (Closed): LIE during request to derivedUnitFacade/{uuid}/collectingareas
http://api.cybertaxonomy.org:80/flora_central_africa/derivedUnitFacade/70c3540a-fefb-4152-9dbf-aef1ae5ffff9/collectin... Andreas Kohlbecker
04:42 PM bug #3061 (Closed): Lecototype typeReference not rendered correctly
test are running successful and are thus confirming the expectations. Ticket fully solved Andreas Kohlbecker
04:41 PM bug #3061 (Resolved): Lecototype typeReference not rendered correctly
Andreas Kohlbecker
04:36 PM Revision 3a3d658d (cdm-dataportal): ref #3061 adapting test and test data
Andreas Kohlbecker
03:46 PM Revision c7f92453 (cdm-dataportal): ref #3061 using the full publication timePeriod instead of on...
Andreas Kohlbecker
03:30 PM Revision c5294246 (cdm-dataportal): ref #3061 fixing position of footnote
Andreas Kohlbecker
01:30 PM Revision 6fac16b9 (cdmlib-apps): Removed all occurrences of "checklist" related code
Patrick Plitzner
12:25 PM Revision b0269b24 (cdm-dataportal): ref #3061 removing cluetip js which is no longer used
Andreas Kohlbecker
11:33 AM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
I could only reproduce the strange behavior (TaxonNode excluded and unplaced flag not initialised) in one data source... Patrick Plitzner
11:28 AM Revision dbd15c7d (cdmlib-apps): Adapt SQL queries to filter for only Buttler approved taxa
Patrick Plitzner

11/28/2016

06:41 PM bug #5938 (Closed): distribution and specimen maps can not be used on the same page
Andreas Kohlbecker
01:39 PM bug #5938 (Resolved): distribution and specimen maps can not be used on the same page
Applied in changeset commit:cdm-dataportal|669f08ee073432d163976f10b59f1d516e71f827. Andreas Kohlbecker
01:23 PM bug #5938 (In Progress): distribution and specimen maps can not be used on the same page
Andreas Kohlbecker
06:38 PM feature request #3650 (Closed): allow supressing empty distribution and specimen maps
Andreas Kohlbecker
05:35 PM feature request #3650 (Resolved): allow supressing empty distribution and specimen maps
Applied in changeset commit:cdm-dataportal|378bc1ce4c8e704cde2fc41d11ab4f81b3b2275d. Andreas Kohlbecker
04:25 PM feature request #3650 (In Progress): allow supressing empty distribution and specimen maps
Andreas Kohlbecker
06:38 PM Revision e0613197 (cdm-dataportal): fix #3650 visibility of distribution and specimen maps config...
Andreas Kohlbecker
05:34 PM Revision 378bc1ce (cdm-dataportal): fix #3650 visibility of distribution and specimen maps config...
Andreas Kohlbecker
04:24 PM feature request #5047 (Duplicate): option to show empty distribution maps
Andreas Kohlbecker
01:40 PM task #6226: Delete orphaned key nodes
~~~ sql
SELECT *
FROM PolytomousKeyNode pkn
WHERE pkn.key_id NOT IN (SELECT id FROM PolytomousKey);
~~~
Andreas Müller
01:39 PM task #6226 (Closed): Delete orphaned key nodes
As deletion did not work correctly for long time we do still have PolytomousKeyNodes that do reference a PolytomousKe... Andreas Müller
01:39 PM Revision 669f08ee (cdm-dataportal): fix #5938 unique ids for each openlayers block elements
Andreas Kohlbecker
01:24 PM Revision 4c21ffdb (cdm-dataportal): ref #5938 fixing js lib loading order (and defined map contai...
Andreas Kohlbecker
01:23 PM feature request #6225 (New): Allow to freeze referencing objects view
Sometimes one wants to check some of the referencing objects by navigating to them without loosing the list. This is ... Andreas Müller
12:40 PM Revision 653e9c6b (cdm-dataportal): maps documentation, refactoring of unused params etc, unique ...
Andreas Kohlbecker
11:43 AM Revision f4675ec1 (cdm-dataportal): doc minor
Andreas Kohlbecker
10:31 AM feature request #5844 (Closed): Make stable identifier clickable in default specimen tab
Andreas Kohlbecker
10:30 AM feature request #5844 (Resolved): Make stable identifier clickable in default specimen tab
Applied in changeset commit:cdm-dataportal|a9ed34adc02e785439264eca051e15954bdeb72c. Andreas Kohlbecker
10:30 AM Revision a9ed34ad (cdm-dataportal): fix #5844 persistent stable identifier clickable
- clickable in specimen tab
- implementation harmonized in specimen table ref #5515
Andreas Kohlbecker
08:34 AM bug #6211 (Closed): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
I agree! Andreas Kohlbecker

11/27/2016

10:42 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
Both examples do now have < 1MB and load in reasonable time <= 5 sec. There still might be possibilities to improve t... Andreas Müller

11/25/2016

08:05 PM bug #6190: remove svn property place holder in first line of code
This can now be done automatically as model changes are fully merged into develop now. Andreas Müller
06:18 PM bug #6224 (Resolved): cdm-webapp is not using current version of cdmlib-remote-webapp.war
Applied in changeset commit:cdm-webapp|f55d498166acfa645e4f31af5869302f6acdb814. Andreas Kohlbecker
06:09 PM bug #6224 (In Progress): cdm-webapp is not using current version of cdmlib-remote-webapp.war
Andreas Kohlbecker
05:40 PM bug #6224 (Closed): cdm-webapp is not using current version of cdmlib-remote-webapp.war
After pushing a specific commit to the server and runing the build pipeline the resulting cdm-server is nor making u... Andreas Kohlbecker
06:15 PM Revision f55d4981 (cdm-webapp): fix #6224 swapping the war overlay order to avoid build pipeline ...
Andreas Kohlbecker
05:23 PM Revision 484bf7ea (cdmlib): ref #6211 cleanup old code
Andreas Müller
05:22 PM Revision 71b8be7f (cdmlib): cleanup
Andreas Müller
05:21 PM bug #6122 (Resolved): add titleCache service
Applied in changeset commit:cdmlib|b3a692b2ee3c7d7a5305a0b9901eaefcc87ca8f7. Andreas Müller
05:21 PM Revision b3a692b2 (cdmlib): fix #6122 use StringResultDTO for titleCache service
Andreas Müller
04:42 PM Revision 0245ae20 (cdmlib): doc
Andreas Müller
03:44 PM bug #6223 (New): change behaviour of AbstractBeanProcessor.excludes to asReference
With the excludes property the AbstractBeanProcessor provides a means to omit specific CDM-Bean properties from being... Andreas Kohlbecker
03:42 PM Revision be11c810 (cdmlib): cleanup
Andreas Müller
03:40 PM bug #6220: Improve definition of orphaned taxon and synonym
Andreas Müller wrote:
> Katja Luther wrote:
> > The open in works correctly now. The wrong symbol for taxa with con...
Katja Luther
03:35 PM bug #6220: Improve definition of orphaned taxon and synonym
Katja Luther wrote:
> The open in works correctly now. The wrong symbol for taxa with conceptrelationships/misapplie...
Andreas Müller
01:15 PM bug #6220: Improve definition of orphaned taxon and synonym
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The fix works so far that search resul...
Katja Luther
12:01 PM bug #6220: Improve definition of orphaned taxon and synonym
Katja Luther wrote:
> Andreas Müller wrote:

> > Also orphaned synonyms are not found in TaxEditor taxon bulk edi...
Andreas Müller
11:55 AM bug #6220: Improve definition of orphaned taxon and synonym
Katja Luther wrote:
> Andreas Müller wrote:
> > The fix works so far that search result in TaxEditor allow only ope...
Andreas Müller
11:44 AM bug #6220: Improve definition of orphaned taxon and synonym
Andreas Müller wrote:
> The fix works so far that search result in TaxEditor allow only opening in TaxEditor now. Ho...
Katja Luther
03:37 PM task #6208 (Rejected): implement synonymy service responding with DTO
The fixes for #6211 improve the situation tremendously. Implementing a pure DTO may be a complex task therefore we re... Andreas Müller
03:25 PM bug #6201 (Closed): Adapt dataportal to the new synonym datamodel
I guess it is all ok. Andreas Müller
12:01 PM bug #6201 (Resolved): Adapt dataportal to the new synonym datamodel
ready for review if needed. Otherwise the synonymy is quite good covered by tests and can be considered to be ok sinc... Andreas Kohlbecker
03:08 PM feature request #6216 (Closed): Allow changing of defaultColor for PresenceAbsenceTerm
Looks good Andreas Müller
03:05 PM Revision 0ede0320 (cdmlib): ref #6211 avoiding to deep initialization of synonym groups
Andreas Kohlbecker
02:11 PM bug #6210 (Closed): Null values for boolean fields are causing PropertyAccessException
this is working now! Andreas Kohlbecker
01:48 PM bug #3226: openlayers map google baselayers: api keys rejected
Hi Gabi,
please can you do the review for this ticket? This it as brief how-to:
1. got to http://test.e-taxonom...
Andreas Kohlbecker
01:43 PM bug #3226 (Resolved): openlayers map google baselayers: api keys rejected
Applied in changeset commit:cdm-dataportal|2b83cc8b859c5bfa6ffb07ccc9c090f3031c6f1a. Andreas Kohlbecker
01:42 PM bug #3226 (In Progress): openlayers map google baselayers: api keys rejected
Andreas Kohlbecker
01:46 PM Revision f619ffbf (cdm-dataportal): openlayers maps cleaning up
Andreas Kohlbecker
01:43 PM bug #6211 (Resolved): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
Applied in changeset commit:cdmlib|17b0c5e7b5ebc5dbe384f62928c3b394d5bb9ece. Andreas Müller
07:08 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
Alternatively we may check if it is possible to adapt getSynonymsByHomotypicGroup() such that less data is initialized. Andreas Müller
06:39 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
The reason for this problem is, that the TaxonPortalController calls the ITaxonService.getSynonymsByHomotypicGroup() ... Andreas Müller
01:42 PM Revision 2b83cc8b (cdm-dataportal): fix #3226 fixing broken Google map layers
Andreas Kohlbecker
01:39 PM Revision 11aa2415 (cdmlib): fix #6211 fix API incompatibility
Andreas Müller
01:08 PM Revision d11d4dd0 (cdmlib): cleanup
Andreas Müller
01:05 PM Revision 17b0c5e7 (cdmlib): fix #6211 reduce initialization for synonymy
Andreas Müller
12:59 PM Revision a6de10b5 (taxeditor): ref #6219: add warning that synonym is deleted immediately
Katja Luther
11:53 AM Revision f06c2616 (cdm-dataportal): ref #6222 adding ticket reference to comment
Andreas Kohlbecker
11:52 AM bug #6222 (New): harmonize classification service return types for the data portal
there is one service request which not yet returning TaxonNodeTDO object, this can cause problems in rare cases.
...
Andreas Kohlbecker
11:44 AM task #6221 (New): mention the unplaced and excluded states in the taxon page
Taxon nodes can be flagged with unplaced and excluded should this be mentioned in the portal page and how should it b... Andreas Kohlbecker
11:39 AM feature request #6203: Implement unplaced and excluded in dataportal
unplaced and excluded are handled correctly in the portal at least in the sense that the model change is not causing ... Andreas Kohlbecker
11:20 AM Revision a0e3ae5c (cdm-dataportal): ref #6203 checked return types of classification services and...
Andreas Kohlbecker
09:45 AM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty
I think it would be nice to implement it in a way similar to the bulkeditor, therefore we have to reconstruct the nam... Katja Luther
09:01 AM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty
The preferred solution is to handle it similar to bulk editor where the deletion from database is invoked only with s... Andreas Müller

11/24/2016

04:35 PM Revision 58525579 (cdmlib): ref #6211 try to fix heap consumption in synonymy service
Andreas Müller
04:31 PM Revision ed27e451 (cdmlib): minor
Andreas Müller
02:50 PM Revision ab94d85b (taxeditor): l10n for PresenceAbsenceTermDetailElement
Patrick Plitzner
02:33 PM feature request #6203: Implement unplaced and excluded in dataportal
Katja, could you have a look on this.
We definetely need to move the unplaced and excluded (in this order) taxa to...
Andreas Müller
02:27 PM Revision cb1498ea (taxeditor): ref #6216 Added button to select color instead of clicking on color
field
- resized color field
Patrick Plitzner
02:27 PM Revision 3dbe4420 (taxeditor): Align label to the middle
Patrick Plitzner
02:24 PM feature request #5616: Add the"Open in..." menu to taxon search
4b80789a fixed the "Open in ..." issue. However there are open questions related to orphaned taxa. See #6220. Andreas Müller
01:34 PM feature request #5616: Add the"Open in..." menu to taxon search
Katja Luther wrote:
> The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when ...
Andreas Müller
02:21 PM bug #6220 (Feedback): Improve definition of orphaned taxon and synonym
The fix works so far that search result in TaxEditor allow only opening in TaxEditor now. However, an orphaned taxon ... Andreas Müller
01:35 PM bug #6220 (Resolved): Improve definition of orphaned taxon and synonym
Applied in changeset commit:cdmlib|4b80789a6d183956c922de22091164555d2ef442. Andreas Müller
01:32 PM bug #6220 (Feedback): Improve definition of orphaned taxon and synonym
Currently taxa are only orphaned if they have no taxon node AND no concept relationships. The later is critical as ta... Andreas Müller
01:44 PM Revision c6c4ab3a (cdmlib): ref #6220 javadoc
Andreas Müller
01:43 PM bug #4945 (Resolved): Right click menu for polytomous key node list view needs correct enabling
Katja Luther
01:42 PM bug #4945 (New): Right click menu for polytomous key node list view needs correct enabling
Katja Luther
01:42 PM bug #4945 (Resolved): Right click menu for polytomous key node list view needs correct enabling
Applied in changeset commit:taxeditor|f81dda1f2c57e7a51be26ab87b68bebda8d0fee4. Katja Luther
01:41 PM Revision f81dda1f (taxeditor): fix #4945: add propertytester for polytomouskeynode to enable menu...
Katja Luther
01:39 PM feature request #5971 (Resolved): Implement database wide CdmPreference writing
Applied in changeset commit:taxeditor|bb920fa17ba6147e45ad67cc651c703584cdcbd6. Katja Luther
01:39 PM Revision bb920fa1 (taxeditor): fix #5971: move admin menu in front of Help
Katja Luther
01:33 PM Revision 4b80789a (cdmlib): fix #6220 Improve isOrphaned definition for Taxon.
Andreas Müller
01:18 PM bug #6219 (Closed): Deleting synonym is persisted immediately, but the editor is set dirty
When deleting a synonym in name editor the deletion is persisted immediately. The editor is set dirty that looks like... Katja Luther
12:37 PM bug #5693 (Closed): Deleting a synonym only deletes the synonym relation
This seems to be fixed also after model changes (removed synonym relationship class). However there are issues about ... Andreas Müller
12:23 PM feature request #6198 (Closed): Remove synonym relationships in TaxEditor
Andreas Müller
12:18 PM Revision 0908acf3 (taxeditor): Adapt labels for taxon node agent relation editing
Andreas Müller
12:03 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
Patrick Plitzner wrote:
> Patrick Plitzner wrote:
> > While reviewing I saw that even the isExcluded is not persist...
Andreas Müller
12:00 PM Revision f83def50 (cdmlib): ref #6199 test for reading excluded, unplaced and excludedNote
Andreas Müller
11:16 AM bug #6218 (Closed): NPE when editing term vocabulary label
When trying to edit the label of a new vocabulary (PresenceAbsenceTerm) I got the below NPE.
I think it happened wh...
Andreas Müller
11:08 AM bug #6217: Adapt colour mapping in dataportals
Projects that might want to use the feature are Caucasus and Asteracea which do have or plan to have multiple data po... Andreas Müller
11:06 AM bug #6217 (New): Adapt colour mapping in dataportals
Currently there is the possibility to adapt the color of a PresenceAbsenceTerm in a distribution map by using the acc... Andreas Müller
10:58 AM feature request #6216 (Feedback): Allow changing of defaultColor for PresenceAbsenceTerm
Works well and ticket can be closed. Only issues might be layout issues:
1. Personally I find it better to have a ...
Andreas Müller
10:23 AM feature request #6216 (Resolved): Allow changing of defaultColor for PresenceAbsenceTerm
Applied in changeset commit:taxeditor|cf4bd11fd2a394c795f744111f8b2cbf7f59f7e5. Patrick Plitzner
10:21 AM feature request #6216 (Closed): Allow changing of defaultColor for PresenceAbsenceTerm
Patrick Plitzner
10:25 AM Revision 15f5a1bd (taxeditor): ref #6216 Pre-select color in ColorDialog
Patrick Plitzner
10:24 AM Revision 20718782 (cdmlib-apps): ref #3934 update Salvador import for facts
Andreas Müller
10:22 AM Revision cf4bd11f (taxeditor): fix #6216 Implement color dialog to change color of presence absence
terms Patrick Plitzner
09:52 AM Revision 033aad78 (taxeditor): all polytomouskey related handler are now extended from RemotingCd...
Katja Luther

11/23/2016

05:01 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
Patrick Plitzner wrote:
> While reviewing I saw that even the isExcluded is not persisted anymore. Have to recheck i...
Patrick Plitzner
04:19 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
While reviewing I saw that even the isExcluded is not persisted anymore. Have to recheck if anything has changed Patrick Plitzner
04:11 PM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
This seems to be caused by a cycle in the object graph which is either not detected or not handled correctly by json-... Andreas Kohlbecker
03:54 PM bug #6210: Null values for boolean fields are causing PropertyAccessException
This is still occurring for me:
* database restored from dump: cdm_integration_cichorieae_2016-11-10_06h25m.Thursd...
Andreas Kohlbecker
02:11 PM bug #6210 (Resolved): Null values for boolean fields are causing PropertyAccessException
Fixed with f3d4c9bc Andreas Müller
03:45 PM bug #6206 (Closed): Vaadin view fail with: Failed to load the bootstrap javascript
Vaadin works on the test server. Seems fine. Patrick Plitzner
03:04 PM feature request #5841 (Resolved): Creating a new alternative in PolytomousKey Editor should set f...
Applied in changeset commit:taxeditor|efd30f4b550d4e53206d2c5d5a720381a5663611. Katja Luther
03:04 PM Revision efd30f4b (taxeditor): fix #5841: set selection to newly created keynode
Katja Luther
02:55 PM bug #6215 (Resolved): NPE when opening preferences with no DB connection
Applied in changeset commit:taxeditor|84ab8cb061709145c824967aa8a3a10742e875ff. Katja Luther
02:38 PM bug #6215 (Closed): NPE when opening preferences with no DB connection
When trying to open the preferences for all "Taxonomic Editor"-"Taxonomic" submenus an NPE is thrown.
~~~
l...
Andreas Müller
02:54 PM Revision 84ab8cb0 (taxeditor): fix #6215: check for datasource when opening preferencepage
Katja Luther
02:41 PM feature request #5971 (Feedback): Implement database wide CdmPreference writing
Andreas Müller
02:41 PM feature request #5971: Implement database wide CdmPreference writing
Please move the new menu in between Extras/Window and Help. Help should always be the last in the row. Andreas Müller
10:26 AM feature request #5971 (Resolved): Implement database wide CdmPreference writing
Applied in changeset commit:taxeditor|0bd095d9fbccd25ce847af780892633284b314f9. Katja Luther
09:29 AM feature request #5971: Implement database wide CdmPreference writing
Now we have a main menu admin. This menu should only be visible for admins or project manager. Katja Luther
02:27 PM feature request #5969 (Closed): Implement CdmPreference reading for database preferences
I think we can close this ticket now. Open issues will be checked in #5971 and are more related to writing then reading Andreas Müller
02:11 PM feature request #6203: Implement unplaced and excluded in dataportal
> Unplaced taxon nodes should be put to an incertis sedis node in the tree. Excluded nodes should be put to an exclud... Andreas Kohlbecker
01:20 PM Revision f3d4c9bc (cdmlib): Fix proparte is null in update script
Andreas Müller
01:19 PM Revision c1bd6833 (cdmlib): cleanup
Andreas Müller
11:15 AM bug #6214 (Closed): Add project specific preferences to CdmPreference menu
For now we have two project specific preferences: RedList (EditorProfile->Rote Liste 2020) and Campanula (Specimens a... Patrick Plitzner
10:33 AM bug #6105 (Resolved): Make CdmPreferences editable in separate view
Katja Luther
10:32 AM bug #6105: Make CdmPreferences editable in separate view
This is done, see #5971 Katja Luther
10:22 AM Revision 0bd095d9 (taxeditor): fix #5971: admin menu is visible only if connected and user has ro...
Katja Luther

11/22/2016

05:32 PM Revision 48e61436 (cdmlib): fix sortindex updater and SynonymDeduplicator
Andreas Müller
10:18 AM bug #6206: Vaadin view fail with: Failed to load the bootstrap javascript
Please review Andreas Kohlbecker
10:03 AM bug #6206 (Resolved): Vaadin view fail with: Failed to load the bootstrap javascript
Applied in changeset commit:cdm-vaadin|a45e5ee72e1bc48fec16b156617c746266e1ccb4. Andreas Kohlbecker
09:32 AM bug #6206: Vaadin view fail with: Failed to load the bootstrap javascript
I examined the situation more in depth:
1. The pom.xml in cdm-webapp was pretty much messed up in respect of th...
Andreas Kohlbecker
09:19 AM bug #6206 (In Progress): Vaadin view fail with: Failed to load the bootstrap javascript
Andreas Kohlbecker
10:17 AM Revision 5dc7cec8 (cdm-webapp): ref #6206 cleaning up - removing commented section
Andreas Kohlbecker
10:03 AM Revision a45e5ee7 (cdm-vaadin): fix #6206 mapping one @WebServlets to the path /VAADIN/*
Andreas Kohlbecker
09:36 AM Revision 5c9f4ef1 (cdm-vaadin): minor - removing comment
Andreas Kohlbecker
09:22 AM Revision d0ded6af (cdm-webapp): ref #6206 solving problems with the war overlay and adding test d...
Andreas Kohlbecker

11/21/2016

05:27 PM bug #6211 (Closed): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
some requests to /portal/taxon/{uuid}/synonymy are causing a massive heap consumption.
test case:
* http://int...
Andreas Kohlbecker
04:55 PM Revision 7635cc7d (cdm-dataportal): ref #6201 fixing problem related to changes in taxon/{uuid}/a...
Andreas Kohlbecker
03:57 PM bug #6209 (Resolved): NPE in DatasourceView
Applied in changeset commit:taxeditor|af45abb87611c04e93d103bd7c7df6221ca9e877. Katja Luther
03:41 PM bug #6209: NPE in DatasourceView
This was a really confusing error message. The original problem was that the remote database was not available. Katja Luther
03:05 PM bug #6209 (Closed): NPE in DatasourceView
occurres when connection to remote datasource
~~~
java.lang.NullPointerException
at eu.etaxonomy.taxeditor.data...
Andreas Kohlbecker
03:56 PM Revision af45abb8 (taxeditor): fix #6209: adapt the message if a datasource is not available
Katja Luther
03:45 PM bug #6210 (Closed): Null values for boolean fields are causing PropertyAccessException
test case: http://int.e-taxonomy.eu/cdmserver/integration_cichorieae/portal/taxon/6d711fa0-77c3-42df-9d44-83fdc78f348... Andreas Kohlbecker
02:29 PM Revision 176a8641 (cdm-dataportal): removing unused variable
Andreas Kohlbecker
02:27 PM Revision 0c5a23b6 (cdm-dataportal): removing obsolte method argument
Andreas Kohlbecker
02:23 PM task #6208 (Rejected): implement synonymy service responding with DTO
The synonymy as returned by the is portal/taxon/{uuid}/synonymy is sometime quite huge and contains a lot of unused i... Andreas Kohlbecker
12:55 PM Revision 9128dcb4 (cdm-dataportal): ref #6201 adapting portal to changes in taxon/{uuid}/accepted...
Andreas Kohlbecker
11:51 AM Revision b19c294b (cdmlib): ref #5974 fixing LIE in controller
Andreas Kohlbecker
10:16 AM bug #6130 (Closed): Areafilter widget broken
works on the test server Andreas Kohlbecker
10:12 AM bug #6130 (Resolved): Areafilter widget broken
Applied in changeset commit:cdm-dataportal|ba127310d2b704049857de82c3c09e1bdc87092c. Andreas Kohlbecker
10:12 AM Revision ba127310 (cdm-dataportal): fix #6130 areafilter widget fixed
Andreas Kohlbecker

11/19/2016

01:55 PM feature request #5727 (Closed): Offer German translation for texts used in molecular plugin
Most translations have now been done. Translating will from now on be done directly in the development further of the... Ben Stöver
01:29 PM Revision 80e535dd (taxeditor): Additional strings externalized in molecular plugin.
Wizard for exporting single read alignments now warns and prompts if files are overwritten.
Bug fix: Changes in the f...
Ben Stöver
07:59 AM Revision 767e3890 (cdmlib-apps): ref #3934 fix factCategory SQL
Andreas Müller

11/18/2016

10:22 PM Revision ea2e509b (cdmlib): Cleanup
Andreas Müller
10:22 PM Revision f8dab136 (cdmlib): ref #3934 update Salvador import for facts
Andreas Müller
10:20 PM Revision b06dca5c (cdmlib-apps): ref #3934 update Salvador import for facts
Andreas Müller
08:05 PM Revision 060676fe (cdmlib): solving polytomouskey node sort index problems
Katja Luther
06:25 PM Revision e9773ade (taxeditor): ref #5971: new main menu admin with cdm preference nomenclatural c...
Katja Luther
05:01 PM Revision ecd0d355 (taxeditor): Messages edited.
Support for parameters to export only single reads or only consensus implemented.
JavaDoc extended.
Ben Stöver
04:45 PM Revision 521599f6 (cdmlib-apps): minor compile issues
Andreas Müller
04:40 PM Revision 3d037d99 (cdmlib): Latest BM import updates for Salvador
Andreas Müller
04:35 PM Revision 209a4cf6 (cdmlib-apps): ref #3934 Latest changes in Salvador import
Andreas Müller
04:35 PM Revision 70f32474 (cdmlib-apps): Add nom. illeg. superfl. to allowed nom.states. without basionym...
Andreas Müller
04:35 PM Revision 805b65b2 (cdmlib-apps): Adapt BgbmInstancesUpdater to new databases
Andreas Müller
04:35 PM Revision bf075ec4 (cdmlib-apps): Adapt BMTaxonRelationExport to new Synonym model
Andreas Müller
04:35 PM Revision 12c99f84 (cdmlib-apps): cleanup
Andreas Müller
04:26 PM Revision 8ec912fc (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-...
Andreas Müller
04:26 PM Revision 13ab8f7a (cdmlib-apps): minor
Andreas Müller
03:45 PM Revision a862b815 (taxeditor): Missing files from last commit added.
Ben Stöver
03:43 PM Revision 00d1a6ce (taxeditor): Export single read alignment wizard separated into two pages.
Option to elongate sequences added.
Application information parameters of JPhyloIO set.
Ben Stöver

11/17/2016

07:17 PM Revision 7417db95 (taxeditor): Exported single read sequences are now filled up with gaps. (Will ...
Texts in ExportSequenceToFileHandler extzernalized and translated. Ben Stöver
05:22 PM Revision d0c85dbc (taxeditor): Strings in ExportSingleReadAlignmentWizardPage externalized and tr...
Ben Stöver
02:11 PM bug #6207: Import Salvador images
Hallo,
zur Frage Image Server oder nicht: „Erstmal“ können wir das mit dem Standard Viewer machen, aber sobald wir m...
Andreas Müller
02:05 PM bug #6207 (New): Import Salvador images
Andreas Müller
01:40 PM Revision 02e8904c (taxeditor): Fixes in ExportSingleReadAlignmentWizardPage layout.
Default values added to ExportSingleReadAlignmentWizardModel.
Updating values after model binding in ExportSingleRead...
Ben Stöver
12:18 PM bug #6206 (Closed): Vaadin view fail with: Failed to load the bootstrap javascript
When testing any vaadin view the following error is shown
~~~
Failed to load the bootstrap javascript: ./../VAADI...
Patrick Plitzner
12:13 PM bug #6200 (Closed): Exception when adding a new synonym (allowOverride)
Update script has been adapted. Remove target version as this was a temporary issue only caused by model update comin... Andreas Müller
11:40 AM feature request #6198 (Resolved): Remove synonym relationships in TaxEditor
Andreas Müller
11:39 AM feature request #5971: Implement database wide CdmPreference writing
This is a subtask of the more general implementation described in #6105 (but more or less also a duplicate) Andreas Müller
10:09 AM Revision 6ecec98b (taxeditor): ref #6198 removed synonym type combobox
Patrick Plitzner
10:06 AM Revision c9d05940 (taxeditor): ref #6198 Correctly initialise ui field for pro parte and partial
Patrick Plitzner
10:05 AM Revision 4f57e9bf (taxeditor): ref #6205 Move excluded notes to the bottom of the wizard
Patrick Plitzner
 

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