Activity
From 11/16/2016 to 12/15/2016
12/15/2016
- 05:34 PM feature request #6278: add sec reference as class attribute to all taxon markup
- implemented!
The taxa with the phycobank sec reference can be styled with the following css (for test database):
... - 05:32 PM feature request #6278 (Resolved): add sec reference as class attribute to all taxon markup
- Applied in changeset commit:cdm-dataportal|4b3be949345d1350fc13ff2e39a908f3c2e84a77.
- 04:41 PM bug #6259: Media page problems with multiple media representations
- please review
- 04:40 PM bug #6259 (Resolved): Media page problems with multiple media representations
- Applied in changeset commit:cdm-dataportal|a867b77477619b9ef73c8f5ef5c04613f6ec7e78.
- 03:13 PM bug #6259 (In Progress): Media page problems with multiple media representations
- 03:12 PM bug #6260: media page: rights stored in the cdm are not displayed
- done, please review.
- 03:10 PM bug #6260 (Resolved): media page: rights stored in the cdm are not displayed
- Applied in changeset commit:cdm-dataportal|daef68e94e5ad40fb7fb395f818822ee1ff3c5ee.
- 02:29 PM bug #6281: delete synonym with annotations throws exception
- this seems to be only a problem if the annotation is related to a synonym not if it is related to a taxon.
The exce... - 01:28 PM bug #6268 (Resolved): descriptions missing in media service responses
- Applied in changeset commit:cdmlib|2b4395edfa8bfe9cf7177d34edaa694416a1969f.
- 12:09 PM bug #6261 (Resolved): NPE while processing /portal/media/{uuid}/sources in BaseController
- Applied in changeset commit:cdmlib|a1765b1ac1036e1582a49691e5b3699fca3c5128.
- 11:41 AM bug #6224 (Closed): cdm-webapp is not using current version of cdmlib-remote-webapp.war
- seems to be fixed
- 11:32 AM task #6284 (Closed): media.bgbm.org available via https
https://media.bgbm.org/erez/cache/eRez%40EditWP6_photos_Lapsana_communis_A_01_jpg_d5760c1f305514ac.jpg
- 11:22 AM bug #6283: Exceptions when editing polytomous key
- There where still some NPE caused by null values in children list of polytomouskey nodes. And sometimes a ConcurrentM...
- 11:09 AM bug #6283 (Closed): Exceptions when editing polytomous key
- Hallo Katja,
ich habe mich dieses Jahr doch noch an neuen Schlüsseln versucht. Bei Orchis gab es ein paar Fehlerm... - 09:14 AM bug #6282 (Rejected): FSI image viewer not working with https
for example: https://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/5d65f017-0c23-43e4-888...- 09:12 AM feature request #6110 (Closed): Use https for map service calls when the portal is access via https
- The maps are working when accessing taxon pages via https
12/14/2016
- 04:28 PM bug #6281 (Closed): delete synonym with annotations throws exception
- Das Löschen von Synonymen geht zwar letztlich, aber es kommt immer zuerst eine Fehlermeldung (s.u.).
Nur wenn man di...
12/13/2016
- 05:21 PM bug #6280 (New): data in taxon editor view and details are not refreshed when pressing F5
- Situation: Data dhanges by a second user in another TaxEditor or in the database directly.
The only way to refresh... - 04:32 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
- this is crucial for the phycobank.
- 04:23 PM feature request #6278 (Closed): add sec reference as class attribute to all taxon markup
- This is needed to be able to style the taxa related to a specific scref differently. The taxa with the 'phycobank' se...
- 02:52 PM bug #6276: Nomenclatural references show parsed date string instead of publication year
- Hi Andreas,
this issue is important for us. We need at least an idea of why this is happening and if the nomencalt... - 02:49 PM bug #6276 (Closed): Nomenclatural references show parsed date string instead of publication year
For example 'Staurastrum longebrachiatum var. quadrifidum (Grönblad) A.A.Gontsch.' in the phycobank database:
Th...- 02:00 PM feature request #6275: Phycobank - DataPortal: display registration data stored in name extension
- implement as phycobank module
- 01:58 PM feature request #6275 (Closed): Phycobank - DataPortal: display registration data stored in name extension
show below Name and footnote as string as in IAPT
12/12/2016
- 02:27 PM bug #6274 (Resolved): add update of childrenCount cache in repair method
- Applied in changeset commit:cdmlib|3977b110dd5f22387a52d4707607b4a3ecaebbec.
- 02:24 PM bug #6274 (Closed): add update of childrenCount cache in repair method
- caused by the sortindex problem there are some childrenCount caches which are not correctly updated. Therefore we nee...
- 02:05 PM bug #6273 (Duplicate): Drag&Drop a classification on the rights editing form throws NPE
- WHen trying to add a new right to a user group via the rights form (user group bulk editor, right click menu, edit ri...
- 01:54 PM bug #6272 (New): Searching in user group bulk editor throws "unexpected error" if rights are not provided
Instead we should have a dialog saying that the user has no right to do the search.
I also wonder why the securi...- 01:26 PM task #6271 (Duplicate): Move user and user groups from bulk editor menu to Admin menu
- ... and add a separator before
12/11/2016
- 01:15 PM feature request #6270 (New): Feature Description, customized order, granular references
- Requirement: Place References where important. http://dataportal.corvids.de/cdm_dataportal/taxon/6f4437d0-5d24-4419-a...
- 08:04 AM feature request #5550 (In Progress): Add languages to the editable terms
- DISCUSS: is it possible to add languages to the editable terms? Should we add ISO 639-5 languages before?
12/10/2016
- 08:53 PM bug #6269 (Rejected): image vanished in portal
- hmm, now it appears suddenly. Sorry, don't know what happened.
- 08:48 PM bug #6269 (Rejected): image vanished in portal
- I've changed the url of a specimen image (Feature->Specimen->Media) and in the EDITor the preview is displayed, but i...
12/09/2016
- 04:20 PM bug #6268 (Closed): descriptions missing in media service responses
- The description for media entities is missing:
http://portal.cybertaxonomy.org/salvador/cdm_dataportal/media/bc3c1... - 03:37 PM bug #6267 (New): Name Relationship supplemental data not always editable
- e.g the later homonym relationship from Coutarea latiflora DC. to Coutarea latiflora Sessé & Moc. ex DC. in Salvador...
- 11:42 AM task #6263 (New): [DISCUSS] Should Credit be reusable
- For discussion see also #5762.
How are Credits used currently? Are there many duplicates? - 11:40 AM bug #6262 (Closed): Implement Rights reusable in TaxEditor
- Since #5762 Rights are reusable. This is important e.g. for copyright statements for image where statements are used ...
12/08/2016
- 09:30 PM task #6252: Implement image import for salvador
- should be fixed except for reusability of copyright #5762
- 03:30 PM bug #6192: taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is enabled
- This is important for the Salvador portal
- 02:57 PM bug #6261 (Closed): NPE while processing /portal/media/{uuid}/sources in BaseController
- http://api.cybertaxonomy.org/salvador/portal/media/9a650031-04cc-48dc-a68b-8d67350423d6/sources.json
strangely thi... - 02:52 PM bug #6260 (Closed): media page: rights stored in the cdm are not displayed
- 02:51 PM bug #6259 (Closed): Media page problems with multiple media representations
- Example: http://portal.cybertaxonomy.org/salvador/cdm_dataportal/media/9a650031-04cc-48dc-a68b-8d67350423d6/8bd66e44-...
- 01:14 PM task #6258 (In Progress): Add Registration to cdm model
- 11:08 AM task #6258: Add Registration to cdm model
- We also need a new Enum RegistrationStatus, with instances defined in #6168
- 10:04 AM task #6258: Add Registration to cdm model
- For the Algea-Registry the model needs to be extended by a Registration class (for the detailed discussion see #6044)...
- 09:59 AM task #6258 (Closed): Add Registration to cdm model
- For the Algea-Registry the model needs to be extended by a Registration class (for the detailed discussion see #6044)...
- 11:21 AM feature request #4766: Repair Methods for the cdm instance
- we already have update methods for sortindex and titlecache. These functionality needs to be available via the admin ...
- 08:41 AM bug #6257 (Worksforme): incorrect SNAPSHOT version after HFX release in cdm-vaadin and cdm-webapp
- The Jenkins jobs cdm-vaadin-HFX-FINISH and cdm-webapp-HFX-FINISH are missing to set the correct SNAPSHOT version. Thi...
12/07/2016
- 01:49 PM feature request #6254: multi-tenancy for cdmlib
- Andreas Müller wrote:
> Static access to terms (and to any other resources?) must be removed before
could you lin... - 01:13 PM feature request #6254: multi-tenancy for cdmlib
- Static access to terms (and to any other resources?) must be removed before
- 11:54 AM feature request #6254 (New): multi-tenancy for cdmlib
- cdm-server consume a significant amount of RAM. This can be critical on servers where multiple cdm-remote instances a...
- 01:28 PM bug #6255 (Closed): jenkins job cdm-webapp-HFX-FINISH fails due to merge conflict
- jenkins job cdm-webapp-HFX-FINISH fails due to merge conflict on merging master back to develop. The conflict occurs ...
- 10:08 AM bug #6253 (New): hierarchic distributions: suppress label suffix when there are no children
- in issue #2988 it was pointed out that the 'label suffix' needs to be suppressed when there are no children.
Is th...
12/06/2016
- 05:54 PM task #6252 (In Progress): Implement image import for salvador
- 05:53 PM task #6252 (Closed): Implement image import for salvador
- Media should be created from fig nr. information in according fact field.
After this Excel import needs to be writ... - 05:31 PM bug #6251 (New): Add references to Vaadin Distribution Editor
- It should be easy to add a reference (source) to the distribution status edited with Vaadin Editor.
We need a fiel... - 05:24 PM bug #6250 (New): bbox transformation for EPSG:900913 layers from the edit mapservice responses is broken
- symptom: EPSG:900913 maps like Google Satellite are not being zoomed to the bbox as calculated by the EDIT map servic...
- 05:11 PM feature request #6249 (Closed): better logging strategy
- The cdmlib-remote instances in a cdm-server should not create individual logs per instance. It is more suitable if al...
- 04:33 PM bug #3226 (Closed): openlayers map google baselayers: api keys rejected
- Gabriele Dröge wrote:
> Am I doing something wrong?
You added your google api key with a trailing whitespace. Aft... - 03:19 PM bug #6248 (Closed): allow machine clients to access /manage/* OAuth2 protected web services
- The creation of the lucene indexes can not be triggered from Jenkins jobs or from the dataportal settings pages, sinc...
- 02:17 PM bug #6247 (Rejected): Check if concept relationships are correctly implemented in Gefäßpflanzenimport B
- 02:08 PM bug #6246 (New): swagger-ui misses details information
- The new swagger-ui misses to display the information on the parameters as well as the default values.
- 01:25 PM feature request #5088 (Feedback): Redirect automatically to according page when search result has exactly one matching item
- I don't know why this has still status "Rejected" though I changed it 4 month ago to "Feedback". Trying again
- 12:15 PM bug #6245 (Resolved): Servlet context reports error after automatic update has run
- This phenomenon occurs always on the production server. On the first run of a new version of the cdmserver the databa...
- 10:26 AM bug #6244 (Resolved): Sortindex problems in complex operations like swap synonym and accepted and others
- Applied in changeset commit:cdmlib|6e7001423c0758a35b20a1fafd87979e897e67f8.
- 09:57 AM bug #6244: Sortindex problems in complex operations like swap synonym and accepted and others
- The problems seem to be caused by the call of updateSortindex when the collection contains null values. Then the meth...
- 09:07 AM bug #6244 (Closed): Sortindex problems in complex operations like swap synonym and accepted and others
- Norbert hatte gerade ein Problem. Er hat bei einer Subspezies diese zuerste mit einem Synonym (einer Spezies) getausc...
- 09:26 AM feature request #6243: Use a mock service for testing the loading of associated units in ABCD import test
- Mockservicees, guter Punkt!
Der einfachste mockservice überhaupt ist eine URI einer Test-Resource die der Classlo... - 09:03 AM feature request #6243 (New): Use a mock service for testing the loading of associated units in ABCD import test
- In IO we do not want to have dependencies to external services, but for testing the ABCD import we also need to test ...
12/05/2016
- 08:57 PM bug #6077: Import of gathering images
- Can you please add a changeset
- 08:49 PM bug #6210: Null values for boolean fields are causing PropertyAccessException
- Remove target version as it was a temporary issue and belongs to #5974
- 03:55 PM bug #6241: fix java doc problems in projects
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > A solution might be to replace all "* @date " by "* @since "
... - 03:50 PM bug #6241: fix java doc problems in projects
- Andreas Müller wrote:
> A solution might be to replace all "* @date " by "* @since "
The doc says the since text ... - 03:44 PM bug #6241: fix java doc problems in projects
- A solution might be to replace all "* @date " by "* @since "
- 12:49 PM bug #6241 (Feedback): fix java doc problems in projects
- javadoc problems exist in the following projects and should be fixed (see also #6240 this is not a duplicate!). The r...
- 03:08 PM bug #6194 (Duplicate): can't enter a new reference from feature data (Faktendaten)
- this is a duplicate for #6178
- 01:16 PM bug #6240 (Resolved): maven javadoc plugin fails with java 1.8
- Applied in changeset commit:cdm-vaadin|31adf9f4302833188ad46a6a325120ae62ad05cb.
- 12:47 PM bug #6240 (Closed): maven javadoc plugin fails with java 1.8
- the maven javadoc plugin fails with java 1.8
this occurred firstly in the cdm-vaadin-RLS-FINISH jenkins job an was... - 01:02 PM bug #3226: openlayers map google baselayers: api keys rejected
- Probably I'm too stupid.
I'm at the test portal, entered the google api key. I selected one of the google maps, bu... - 10:42 AM bug #6218 (Resolved): NPE when editing term vocabulary label
- Applied in changeset commit:taxeditor|d57cedd1bd3ee417373720f6e40036c13d79a5e4.
- 10:33 AM bug #6072: Implement getTaxonomicGroups for Edaphobase
- includeEntity=true should now be fixed
- 10:31 AM feature request #6133: Improve Rank Webservice
- sortIndex is now available when using includeEntity=true
- 09:48 AM feature request #4594: RL Webservice 7: Return taxa by Identifier
- Missing includeEntity is fixed. I think we can close this ticket. If there are further open issues we may open anothe...
- 09:43 AM feature request #4594 (Resolved): RL Webservice 7: Return taxa by Identifier
- Applied in changeset commit:cdmlib|8acdc0b7d98692ee721bf18cb23fa24b2de8b001.
- 09:06 AM feature request #6238 (Resolved): add name of sec reference to display of concept relations in portal and a little header
- Hi Gabi,
I enabled the sec reference display in your portal for the whole synonymy. The according settings are fou... - 09:06 AM feature request #6239 (New): Optional header for taxon concept section in synbbnonymy
- copied from #6238
Add a header before the concept relation part e.g. "Concept relations"
Example: http://da... - 08:13 AM task #6135 (Resolved): Remove authors from Taxonomische Großgruppe
- Applied in changeset commit:cdmlib|077e258beb50580d0a341c21a13f61927aad88e7.
12/03/2016
- 03:38 PM feature request #6238 (Closed): add name of sec reference to display of concept relations in portal and a little header
- 1. Name of sec reference/referenced classification is not displayed for concept relations
2. Add a header before the...
12/02/2016
- 10:12 PM bug #6236 (Resolved): Add alphabetic length ordering in name search
- Applied in changeset commit:cdmlib|57ef2f9d9b15136e86c3ef0ceb53fe0c70791303.
- 10:13 AM bug #6236 (Closed): Add alphabetic length ordering in name search
- Wir wollen immer nur die ersten 10 Treffer in einer Combobox anzeigen. Dafür wäre eine längenlexiographische Sortieru...
- 04:31 PM feature request #6134 (Resolved): Allow grouping by Taxonomische Großgruppe
- Applied in changeset commit:cdmlib|e3fc5af3c712b705d2c5b4ee36b9334cedd1e710.
- 04:07 PM feature request #5956 (Resolved): Improve functionality and UX for (children display in) breadcrumb navigation - 2
- all issues solved except the transparency which needs to be discussed.
I am not sure if the caveats mentioned in... - 03:20 PM bug #6237 (New): Make TreeIndex a hibernate user type
- see eu.etaxonomy.cdm.model.common.TreeIndex
- 10:16 AM feature request #6128 (Resolved): Include authorship in taxon search web service
- Applied in changeset commit:cdmlib|05c87b7501b0737b129f4fb5769b56b4c135009c.
- 08:33 AM bug #6235 (Rejected): page duplication when accessing resticted content
- This is not a problem in the code. The observed effect was caused by pending updates for the cdm_dataportal module an...
12/01/2016
- 05:42 PM bug #6235 (Rejected): page duplication when accessing resticted content
- At least in the flora-cuba portal there is strange effect when accessing a taxon page without sufficient permissions....
- 04:57 PM feature request #6110: Use https for map service calls when the portal is access via https
- cannot test until the test portals are running under https
- 04:54 PM bug #6114 (Closed): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
- 04:51 PM task #6003 (Closed): Cleanup redmine users
- 04:50 PM bug #4965 (Closed): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
- 04:38 PM bug #6234 (New): Unavailable server creates infinite exception loop
- while the server was down I got a infinite loop of exception dialogs. Pressing OK created a new dialog.
~~~
org.s... - 04:34 PM bug #6220: Improve definition of orphaned taxon and synonym
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > The open in works correctly now. The wro... - 04:28 PM feature request #6058 (Closed): Store NamedArea dialog filters more individually
- 04:28 PM feature request #6058: Store NamedArea dialog filters more individually
- Open issues moved to new ticket #6233
- 04:26 PM bug #6233 (New): Open issues for individual dialog filters
- Copied from #6058:
1) All Area lists like (geoscope in classification or PolytomousKey) seem to handle "Add" and "... - 04:14 PM feature request #6232 (New): secure OAuth2 grant types 'implicit' or 'password' by TSL/SSL.
- for details see #6118
- 04:13 PM task #6118 (Closed): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
- 04:01 PM feature request #5971: Implement database wide CdmPreference writing
- If no CdmPreference exists yet for nomenclatural code an NPE is thrown:
~~~
login : admin
editor version : 4.4.0... - 03:06 PM bug #6160 (Rejected): Add preservation method and stage as sub class to DefinedTerm
- We have to refactor the preference classes to use TermType instead of the Term class -> close as rejected
- 03:02 PM bug #5862 (Closed): Spring needs online resources during launch
- Works now
- 02:46 PM bug #6231 (Worksforme): Correctly handle failed term deletions in the editor
- Deletion of MarkerType is prevented at the persistence level, but the MarkerType is deleted from the session in the e...
- 02:43 PM bug #5104 (Closed): prevent MarkerTypes from being deleted when there are Marker entities using that type
- Deletion is prevented at the persistence level, but the MarkerType is deleted from the session in the editor. That is...
- 02:32 PM feature request #4866 (In Progress): Implement clone method for complete classifications
- This is partly and only needs review and probably some improvements.
- 02:31 PM feature request #4867 (In Progress): Add menu item for subtree cloning
- This is partly done and is an experimental feature currently.
- 02:26 PM feature request #3994 (Closed): Select widget to choose the filter areas for the advanced search
- 01:07 PM bug #6230 (New): harmonize specimen page implementation and harmonize with drupal coding conventions
- 1. The specimen page implementation is not using the cdm node api, please harmonize. You can use the named_area page ...
- 12:57 PM feature request #2985 (Resolved): Improve Specimen details display
- Andreas M: please review
11/30/2016
- 05:06 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- Before we close this there is one remaining issue:
Please move the "Open in Editor Check box down to the very bott... - 05:03 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- The open issues are general multi-language editor issues handled in a new ticket #6228.
- 12:58 PM bug #6229 (New): Implement multi-language support for MultiLanguage textes everywhere
- Currently only a few multi-language attributes are really supported by the Editor. These are TextData.multilanguageTe...
- 11:58 AM bug #6228 (Closed): Fix behavior of multi-language editing
- As realized in #6199 multi-language editing does not work correctly yet.
Adding >2 languages, deletes one of the old... - 10:49 AM feature request #2985: Improve Specimen details display
- Andreas Kohlbecker wrote:
> Hi Andreas M.
>
> the the original ticket you wrote:
>
> > additional areas should... - 10:21 AM feature request #2985: Improve Specimen details display
- Hi Andreas M.
the the original ticket you wrote:
> additional areas should be shown with the area level such as...
11/29/2016
- 06:00 PM feature request #2985 (In Progress): Improve Specimen details display
- 05:17 PM bug #6227 (Closed): LIE during request to derivedUnitFacade/{uuid}/collectingareas
- http://api.cybertaxonomy.org:80/flora_central_africa/derivedUnitFacade/70c3540a-fefb-4152-9dbf-aef1ae5ffff9/collectin...
- 04:42 PM bug #3061 (Closed): Lecototype typeReference not rendered correctly
- test are running successful and are thus confirming the expectations. Ticket fully solved
- 04:41 PM bug #3061 (Resolved): Lecototype typeReference not rendered correctly
- 11:33 AM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- I could only reproduce the strange behavior (TaxonNode excluded and unplaced flag not initialised) in one data source...
11/28/2016
- 06:41 PM bug #5938 (Closed): distribution and specimen maps can not be used on the same page
- 01:39 PM bug #5938 (Resolved): distribution and specimen maps can not be used on the same page
- Applied in changeset commit:cdm-dataportal|669f08ee073432d163976f10b59f1d516e71f827.
- 01:23 PM bug #5938 (In Progress): distribution and specimen maps can not be used on the same page
- 06:38 PM feature request #3650 (Closed): allow supressing empty distribution and specimen maps
- 05:35 PM feature request #3650 (Resolved): allow supressing empty distribution and specimen maps
- Applied in changeset commit:cdm-dataportal|378bc1ce4c8e704cde2fc41d11ab4f81b3b2275d.
- 04:25 PM feature request #3650 (In Progress): allow supressing empty distribution and specimen maps
- 04:24 PM feature request #5047 (Duplicate): option to show empty distribution maps
- 01:40 PM task #6226: Delete orphaned key nodes
- ~~~ sql
SELECT *
FROM PolytomousKeyNode pkn
WHERE pkn.key_id NOT IN (SELECT id FROM PolytomousKey);
~~~ - 01:39 PM task #6226 (Closed): Delete orphaned key nodes
- As deletion did not work correctly for long time we do still have PolytomousKeyNodes that do reference a PolytomousKe...
- 01:23 PM feature request #6225 (New): Allow to freeze referencing objects view
- Sometimes one wants to check some of the referencing objects by navigating to them without loosing the list. This is ...
- 10:31 AM feature request #5844 (Closed): Make stable identifier clickable in default specimen tab
- 10:30 AM feature request #5844 (Resolved): Make stable identifier clickable in default specimen tab
- Applied in changeset commit:cdm-dataportal|a9ed34adc02e785439264eca051e15954bdeb72c.
- 08:34 AM bug #6211 (Closed): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- I agree!
11/27/2016
- 10:42 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- Both examples do now have < 1MB and load in reasonable time <= 5 sec. There still might be possibilities to improve t...
11/25/2016
- 08:05 PM bug #6190: remove svn property place holder in first line of code
- This can now be done automatically as model changes are fully merged into develop now.
- 06:18 PM bug #6224 (Resolved): cdm-webapp is not using current version of cdmlib-remote-webapp.war
- Applied in changeset commit:cdm-webapp|f55d498166acfa645e4f31af5869302f6acdb814.
- 06:09 PM bug #6224 (In Progress): cdm-webapp is not using current version of cdmlib-remote-webapp.war
- 05:40 PM bug #6224 (Closed): cdm-webapp is not using current version of cdmlib-remote-webapp.war
- After pushing a specific commit to the server and runing the build pipeline the resulting cdm-server is nor making u...
- 05:21 PM bug #6122 (Resolved): add titleCache service
- Applied in changeset commit:cdmlib|b3a692b2ee3c7d7a5305a0b9901eaefcc87ca8f7.
- 03:44 PM bug #6223 (New): change behaviour of AbstractBeanProcessor.excludes to asReference
- With the excludes property the AbstractBeanProcessor provides a means to omit specific CDM-Bean properties from being...
- 03:40 PM bug #6220: Improve definition of orphaned taxon and synonym
- Andreas Müller wrote:
> Katja Luther wrote:
> > The open in works correctly now. The wrong symbol for taxa with con... - 03:35 PM bug #6220: Improve definition of orphaned taxon and synonym
- Katja Luther wrote:
> The open in works correctly now. The wrong symbol for taxa with conceptrelationships/misapplie... - 01:15 PM bug #6220: Improve definition of orphaned taxon and synonym
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The fix works so far that search resul... - 12:01 PM bug #6220: Improve definition of orphaned taxon and synonym
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also orphaned synonyms are not found in TaxEditor taxon bulk edi... - 11:55 AM bug #6220: Improve definition of orphaned taxon and synonym
- Katja Luther wrote:
> Andreas Müller wrote:
> > The fix works so far that search result in TaxEditor allow only ope... - 11:44 AM bug #6220: Improve definition of orphaned taxon and synonym
- Andreas Müller wrote:
> The fix works so far that search result in TaxEditor allow only opening in TaxEditor now. Ho... - 03:37 PM task #6208 (Rejected): Implement synonymy service responding with DTO
- The fixes for #6211 improve the situation tremendously. Implementing a pure DTO may be a complex task therefore we re...
- 03:25 PM bug #6201 (Closed): Adapt dataportal to the new synonym datamodel
- I guess it is all ok.
- 12:01 PM bug #6201 (Resolved): Adapt dataportal to the new synonym datamodel
- ready for review if needed. Otherwise the synonymy is quite good covered by tests and can be considered to be ok sinc...
- 03:08 PM feature request #6216 (Closed): Allow changing of defaultColor for PresenceAbsenceTerm
- Looks good
- 02:11 PM bug #6210 (Closed): Null values for boolean fields are causing PropertyAccessException
- this is working now!
- 01:48 PM bug #3226: openlayers map google baselayers: api keys rejected
- Hi Gabi,
please can you do the review for this ticket? This it as brief how-to:
1. got to http://test.e-taxonom... - 01:43 PM bug #3226 (Resolved): openlayers map google baselayers: api keys rejected
- Applied in changeset commit:cdm-dataportal|2b83cc8b859c5bfa6ffb07ccc9c090f3031c6f1a.
- 01:42 PM bug #3226 (In Progress): openlayers map google baselayers: api keys rejected
- 01:43 PM bug #6211 (Resolved): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- Applied in changeset commit:cdmlib|17b0c5e7b5ebc5dbe384f62928c3b394d5bb9ece.
- 07:08 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- Alternatively we may check if it is possible to adapt getSynonymsByHomotypicGroup() such that less data is initialized.
- 06:39 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- The reason for this problem is, that the TaxonPortalController calls the ITaxonService.getSynonymsByHomotypicGroup() ...
- 11:52 AM bug #6222 (New): harmonize classification service return types for the data portal
- there is one service request which not yet returning TaxonNodeTDO object, this can cause problems in rare cases.
... - 11:44 AM task #6221 (New): mention the unplaced and excluded states in the taxon page
- Taxon nodes can be flagged with unplaced and excluded should this be mentioned in the portal page and how should it b...
- 11:39 AM feature request #6203: Implement unplaced and excluded in dataportal
- unplaced and excluded are handled correctly in the portal at least in the sense that the model change is not causing ...
- 09:45 AM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty
- I think it would be nice to implement it in a way similar to the bulkeditor, therefore we have to reconstruct the nam...
- 09:01 AM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty
- The preferred solution is to handle it similar to bulk editor where the deletion from database is invoked only with s...
11/24/2016
- 02:33 PM feature request #6203: Implement unplaced and excluded in dataportal
- Katja, could you have a look on this.
We definetely need to move the unplaced and excluded (in this order) taxa to... - 02:24 PM feature request #5616: Add the"Open in..." menu to taxon search
- 4b80789a fixed the "Open in ..." issue. However there are open questions related to orphaned taxa. See #6220.
- 01:34 PM feature request #5616: Add the"Open in..." menu to taxon search
- Katja Luther wrote:
> The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when ... - 02:21 PM bug #6220 (Feedback): Improve definition of orphaned taxon and synonym
- The fix works so far that search result in TaxEditor allow only opening in TaxEditor now. However, an orphaned taxon ...
- 01:35 PM bug #6220 (Resolved): Improve definition of orphaned taxon and synonym
- Applied in changeset commit:cdmlib|4b80789a6d183956c922de22091164555d2ef442.
- 01:32 PM bug #6220 (Closed): Improve definition of orphaned taxon and synonym
- Currently taxa are only orphaned if they have no taxon node AND no concept relationships. The later is critical as ta...
- 01:43 PM bug #4945 (Resolved): Right click menu for polytomous key node list view needs correct enabling
- 01:42 PM bug #4945 (New): Right click menu for polytomous key node list view needs correct enabling
- 01:42 PM bug #4945 (Resolved): Right click menu for polytomous key node list view needs correct enabling
- Applied in changeset commit:taxeditor|f81dda1f2c57e7a51be26ab87b68bebda8d0fee4.
- 01:39 PM feature request #5971 (Resolved): Implement database wide CdmPreference writing
- Applied in changeset commit:taxeditor|bb920fa17ba6147e45ad67cc651c703584cdcbd6.
- 01:18 PM bug #6219 (Closed): Deleting synonym is persisted immediately, but the editor is set dirty
- When deleting a synonym in name editor the deletion is persisted immediately. The editor is set dirty that looks like...
- 12:37 PM bug #5693 (Closed): Deleting a synonym only deletes the synonym relation
- This seems to be fixed also after model changes (removed synonym relationship class). However there are issues about ...
- 12:23 PM feature request #6198 (Closed): Remove synonym relationships in TaxEditor
- 12:03 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- Patrick Plitzner wrote:
> Patrick Plitzner wrote:
> > While reviewing I saw that even the isExcluded is not persist... - 11:16 AM bug #6218 (Closed): NPE when editing term vocabulary label
- When trying to edit the label of a new vocabulary (PresenceAbsenceTerm) I got the below NPE.
I think it happened wh... - 11:08 AM bug #6217: Adapt colour mapping in dataportals
- Projects that might want to use the feature are Caucasus and Asteracea which do have or plan to have multiple data po...
- 11:06 AM bug #6217 (New): Adapt colour mapping in dataportals
- Currently there is the possibility to adapt the color of a PresenceAbsenceTerm in a distribution map by using the acc...
- 10:58 AM feature request #6216 (Feedback): Allow changing of defaultColor for PresenceAbsenceTerm
- Works well and ticket can be closed. Only issues might be layout issues:
1. Personally I find it better to have a ... - 10:23 AM feature request #6216 (Resolved): Allow changing of defaultColor for PresenceAbsenceTerm
- Applied in changeset commit:taxeditor|cf4bd11fd2a394c795f744111f8b2cbf7f59f7e5.
- 10:21 AM feature request #6216 (Closed): Allow changing of defaultColor for PresenceAbsenceTerm
11/23/2016
- 05:01 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- Patrick Plitzner wrote:
> While reviewing I saw that even the isExcluded is not persisted anymore. Have to recheck i... - 04:19 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- While reviewing I saw that even the isExcluded is not persisted anymore. Have to recheck if anything has changed
- 04:11 PM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- This seems to be caused by a cycle in the object graph which is either not detected or not handled correctly by json-...
- 03:54 PM bug #6210: Null values for boolean fields are causing PropertyAccessException
- This is still occurring for me:
* database restored from dump: cdm_integration_cichorieae_2016-11-10_06h25m.Thursd... - 02:11 PM bug #6210 (Resolved): Null values for boolean fields are causing PropertyAccessException
- Fixed with f3d4c9bc
- 03:45 PM bug #6206 (Closed): Vaadin view fail with: Failed to load the bootstrap javascript
- Vaadin works on the test server. Seems fine.
- 03:04 PM feature request #5841 (Resolved): Creating a new alternative in PolytomousKey Editor should set focus to new PKNode
- Applied in changeset commit:taxeditor|efd30f4b550d4e53206d2c5d5a720381a5663611.
- 02:55 PM bug #6215 (Resolved): NPE when opening preferences with no DB connection
- Applied in changeset commit:taxeditor|84ab8cb061709145c824967aa8a3a10742e875ff.
- 02:38 PM bug #6215 (Closed): NPE when opening preferences with no DB connection
- When trying to open the preferences for all "Taxonomic Editor"-"Taxonomic" submenus an NPE is thrown.
~~~
l... - 02:41 PM feature request #5971 (Feedback): Implement database wide CdmPreference writing
- 02:41 PM feature request #5971: Implement database wide CdmPreference writing
- Please move the new menu in between Extras/Window and Help. Help should always be the last in the row.
- 10:26 AM feature request #5971 (Resolved): Implement database wide CdmPreference writing
- Applied in changeset commit:taxeditor|0bd095d9fbccd25ce847af780892633284b314f9.
- 09:29 AM feature request #5971: Implement database wide CdmPreference writing
- Now we have a main menu admin. This menu should only be visible for admins or project manager.
- 02:27 PM feature request #5969 (Closed): Implement CdmPreference reading for database preferences
- I think we can close this ticket now. Open issues will be checked in #5971 and are more related to writing then reading
- 02:11 PM feature request #6203: Implement unplaced and excluded in dataportal
- > Unplaced taxon nodes should be put to an incertis sedis node in the tree. Excluded nodes should be put to an exclud...
- 01:59 PM bug #6212 (In Progress): api info incomplete in new swagger-ui
- the upgrade to swagger 2.0 solved the probelm partially. The Terms of Serivces whoever is still missing.
- 10:55 AM bug #6212 (In Progress): api info incomplete in new swagger-ui
- After updating swagger-ui to version 2.2.6 two of the api info entries are no longer show. The complete set of entrie...
- 11:15 AM bug #6214 (Closed): Add project specific preferences to CdmPreference menu
- For now we have two project specific preferences: RedList (EditorProfile->Rote Liste 2020) and Campanula (Specimens a...
- 11:10 AM feature request #6213 (Resolved): use separate tempfolder per store updater
- all tempfiles downloded by a storeupdater should go into a tempfolder exclusively used by this updater.
- 10:33 AM bug #6105 (Resolved): Make CdmPreferences editable in separate view
- 10:32 AM bug #6105: Make CdmPreferences editable in separate view
- This is done, see #5971
11/22/2016
- 10:18 AM bug #6206: Vaadin view fail with: Failed to load the bootstrap javascript
- Please review
- 10:03 AM bug #6206 (Resolved): Vaadin view fail with: Failed to load the bootstrap javascript
- Applied in changeset commit:cdm-vaadin|a45e5ee72e1bc48fec16b156617c746266e1ccb4.
- 09:32 AM bug #6206: Vaadin view fail with: Failed to load the bootstrap javascript
- I examined the situation more in depth:
1. The pom.xml in cdm-webapp was pretty much messed up in respect of th... - 09:19 AM bug #6206 (In Progress): Vaadin view fail with: Failed to load the bootstrap javascript
11/21/2016
- 05:27 PM bug #6211 (Closed): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- some requests to /portal/taxon/{uuid}/synonymy are causing a massive heap consumption.
test case:
* http://int... - 03:57 PM bug #6209 (Resolved): NPE in DatasourceView
- Applied in changeset commit:taxeditor|af45abb87611c04e93d103bd7c7df6221ca9e877.
- 03:41 PM bug #6209: NPE in DatasourceView
- This was a really confusing error message. The original problem was that the remote database was not available.
- 03:05 PM bug #6209 (Closed): NPE in DatasourceView
- occurres when connection to remote datasource
~~~
java.lang.NullPointerException
at eu.etaxonomy.taxeditor.data... - 03:45 PM bug #6210 (Closed): Null values for boolean fields are causing PropertyAccessException
- test case: http://int.e-taxonomy.eu/cdmserver/integration_cichorieae/portal/taxon/6d711fa0-77c3-42df-9d44-83fdc78f348...
- 02:23 PM task #6208 (In Progress): Implement synonymy service responding with DTO
- The synonymy as returned by the is portal/taxon/{uuid}/synonymy is sometime quite huge and contains a lot of unused i...
- 10:16 AM bug #6130 (Closed): Areafilter widget broken
- works on the test server
- 10:12 AM bug #6130 (Resolved): Areafilter widget broken
- Applied in changeset commit:cdm-dataportal|ba127310d2b704049857de82c3c09e1bdc87092c.
- 09:51 AM feature request #6189 (Closed): Client adapter for Plazi treatment database
- implementation complete and released with UTIS version 1.2.1
11/19/2016
- 01:55 PM feature request #5727 (Closed): Offer German translation for texts used in molecular plugin
- Most translations have now been done. Translating will from now on be done directly in the development further of the...
11/17/2016
- 02:11 PM bug #6207: Import Salvador images
- Hallo,
zur Frage Image Server oder nicht: „Erstmal“ können wir das mit dem Standard Viewer machen, aber sobald wir m... - 02:05 PM bug #6207 (Closed): Import Salvador images
- Open issue(s):
* Quellenzitat im Titel (siehe #6207#note-6) => #6265
* rulebased thumbnails and move to mediaserv... - 12:18 PM bug #6206 (Closed): Vaadin view fail with: Failed to load the bootstrap javascript
- When testing any vaadin view the following error is shown
~~~
Failed to load the bootstrap javascript: ./../VAADI... - 12:13 PM bug #6200 (Closed): Exception when adding a new synonym (allowOverride)
- Update script has been adapted. Remove target version as this was a temporary issue only caused by model update comin...
- 11:40 AM feature request #6198 (Resolved): Remove synonym relationships in TaxEditor
- 11:39 AM feature request #5971: Implement database wide CdmPreference writing
- This is a subtask of the more general implementation described in #6105 (but more or less also a duplicate)
11/16/2016
- 05:29 PM bug #6199 (Feedback): Excluded note for excluded taxon nodes in TaxEdtior
- Looks like other additional languages are not stored correctly.
Also we may think about make it fully invisible as... - 05:25 PM feature request #6197 (Closed): Move excluded and unplaced from Taxon to TaxonNode in TaxEditor
- Works well. There is a follow up ticket #6205.
- 05:24 PM bug #6205 (Duplicate): Move excluded nodes to the bottom of the list in TaxEditor navigator
- ... and also ad a symbol to the node that shows that it is excluded.
We may also think about adding a "set to excl... - 05:17 PM feature request #6198 (Feedback): Remove synonym relationships in TaxEditor
- 05:16 PM feature request #6198: Remove synonym relationships in TaxEditor
- There is a more general issue related to #5523 and #5877.
Currently the synonym type is not handled correctly by t... - 05:13 PM feature request #6198: Remove synonym relationships in TaxEditor
- It looks like partial and pro parte is not persisted.
- 04:52 PM feature request #5778 (Closed): Update symbols for PresenceAbsenceTerms in existing databases
- 04:32 PM bug #5826 (Closed): Clean up names with empty name descriptions
- 04:23 PM feature request #5921 (Closed): Change symbol for congruence relationship.
- 04:21 PM feature request #5981 (Closed): Add abbreviation to Rank "Cultivar"
- 10:57 AM bug #4965: unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
- Please review the latest change 32e833cb
- 10:47 AM feature request #5634 (Closed): Excluded note for excluded taxa /taxon nodes
- 10:46 AM feature request #6204 (New): Show excludedNote in dataportal
- for more information see model change ticket #5634. The new field should be shown in the dataportal (maybe configurab...
- 10:43 AM feature request #5875 (Closed): Add isDefault flag to DescriptionBase
- 10:41 AM feature request #5951: Add collector, field number and collection to specimen search label
- A second cache field is now implemented (#5952) so we could start implementing a formatter (cache strategy ) and acco...
- 10:40 AM feature request #5952 (Closed): Second cache field for specimen (identityCache)
- 10:38 AM bug #5976 (Closed): Update sortIndex for potential nullValue sortIndexes
- 10:37 AM task #6089 (Closed): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
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