Activity
From 10/31/2016 to 11/29/2016
11/29/2016
- 06:00 PM feature request #2985 (In Progress): Improve Specimen details display
- 05:17 PM bug #6227 (Closed): LIE during request to derivedUnitFacade/{uuid}/collectingareas
- http://api.cybertaxonomy.org:80/flora_central_africa/derivedUnitFacade/70c3540a-fefb-4152-9dbf-aef1ae5ffff9/collectin...
- 04:42 PM bug #3061 (Closed): Lecototype typeReference not rendered correctly
- test are running successful and are thus confirming the expectations. Ticket fully solved
- 04:41 PM bug #3061 (Resolved): Lecototype typeReference not rendered correctly
- 11:33 AM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- I could only reproduce the strange behavior (TaxonNode excluded and unplaced flag not initialised) in one data source...
11/28/2016
- 06:41 PM bug #5938 (Closed): distribution and specimen maps can not be used on the same page
- 01:39 PM bug #5938 (Resolved): distribution and specimen maps can not be used on the same page
- Applied in changeset commit:cdm-dataportal|669f08ee073432d163976f10b59f1d516e71f827.
- 01:23 PM bug #5938 (In Progress): distribution and specimen maps can not be used on the same page
- 06:38 PM feature request #3650 (Closed): allow supressing empty distribution and specimen maps
- 05:35 PM feature request #3650 (Resolved): allow supressing empty distribution and specimen maps
- Applied in changeset commit:cdm-dataportal|378bc1ce4c8e704cde2fc41d11ab4f81b3b2275d.
- 04:25 PM feature request #3650 (In Progress): allow supressing empty distribution and specimen maps
- 04:24 PM feature request #5047 (Duplicate): option to show empty distribution maps
- 01:40 PM task #6226: Delete orphaned key nodes
- ~~~ sql
SELECT *
FROM PolytomousKeyNode pkn
WHERE pkn.key_id NOT IN (SELECT id FROM PolytomousKey);
~~~ - 01:39 PM task #6226 (Closed): Delete orphaned key nodes
- As deletion did not work correctly for long time we do still have PolytomousKeyNodes that do reference a PolytomousKe...
- 01:23 PM feature request #6225 (New): Allow to freeze referencing objects view
- Sometimes one wants to check some of the referencing objects by navigating to them without loosing the list. This is ...
- 10:31 AM feature request #5844 (Closed): Make stable identifier clickable in default specimen tab
- 10:30 AM feature request #5844 (Resolved): Make stable identifier clickable in default specimen tab
- Applied in changeset commit:cdm-dataportal|a9ed34adc02e785439264eca051e15954bdeb72c.
- 08:34 AM bug #6211 (Closed): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- I agree!
11/27/2016
- 10:42 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- Both examples do now have < 1MB and load in reasonable time <= 5 sec. There still might be possibilities to improve t...
11/25/2016
- 08:05 PM bug #6190: remove svn property place holder in first line of code
- This can now be done automatically as model changes are fully merged into develop now.
- 06:18 PM bug #6224 (Resolved): cdm-webapp is not using current version of cdmlib-remote-webapp.war
- Applied in changeset commit:cdm-webapp|f55d498166acfa645e4f31af5869302f6acdb814.
- 06:09 PM bug #6224 (In Progress): cdm-webapp is not using current version of cdmlib-remote-webapp.war
- 05:40 PM bug #6224 (Closed): cdm-webapp is not using current version of cdmlib-remote-webapp.war
- After pushing a specific commit to the server and runing the build pipeline the resulting cdm-server is nor making u...
- 05:21 PM bug #6122 (Resolved): add titleCache service
- Applied in changeset commit:cdmlib|b3a692b2ee3c7d7a5305a0b9901eaefcc87ca8f7.
- 03:44 PM bug #6223 (New): change behaviour of AbstractBeanProcessor.excludes to asReference
- With the excludes property the AbstractBeanProcessor provides a means to omit specific CDM-Bean properties from being...
- 03:40 PM bug #6220: Improve definition of orphaned taxon and synonym
- Andreas Müller wrote:
> Katja Luther wrote:
> > The open in works correctly now. The wrong symbol for taxa with con... - 03:35 PM bug #6220: Improve definition of orphaned taxon and synonym
- Katja Luther wrote:
> The open in works correctly now. The wrong symbol for taxa with conceptrelationships/misapplie... - 01:15 PM bug #6220: Improve definition of orphaned taxon and synonym
- Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > The fix works so far that search resul... - 12:01 PM bug #6220: Improve definition of orphaned taxon and synonym
- Katja Luther wrote:
> Andreas Müller wrote:
> > Also orphaned synonyms are not found in TaxEditor taxon bulk edi... - 11:55 AM bug #6220: Improve definition of orphaned taxon and synonym
- Katja Luther wrote:
> Andreas Müller wrote:
> > The fix works so far that search result in TaxEditor allow only ope... - 11:44 AM bug #6220: Improve definition of orphaned taxon and synonym
- Andreas Müller wrote:
> The fix works so far that search result in TaxEditor allow only opening in TaxEditor now. Ho... - 03:37 PM task #6208 (Rejected): Implement synonymy service responding with DTO
- The fixes for #6211 improve the situation tremendously. Implementing a pure DTO may be a complex task therefore we re...
- 03:25 PM bug #6201 (Closed): Adapt dataportal to the new synonym datamodel
- I guess it is all ok.
- 12:01 PM bug #6201 (Resolved): Adapt dataportal to the new synonym datamodel
- ready for review if needed. Otherwise the synonymy is quite good covered by tests and can be considered to be ok sinc...
- 03:08 PM feature request #6216 (Closed): Allow changing of defaultColor for PresenceAbsenceTerm
- Looks good
- 02:11 PM bug #6210 (Closed): Null values for boolean fields are causing PropertyAccessException
- this is working now!
- 01:48 PM bug #3226: openlayers map google baselayers: api keys rejected
- Hi Gabi,
please can you do the review for this ticket? This it as brief how-to:
1. got to http://test.e-taxonom... - 01:43 PM bug #3226 (Resolved): openlayers map google baselayers: api keys rejected
- Applied in changeset commit:cdm-dataportal|2b83cc8b859c5bfa6ffb07ccc9c090f3031c6f1a.
- 01:42 PM bug #3226 (In Progress): openlayers map google baselayers: api keys rejected
- 01:43 PM bug #6211 (Resolved): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- Applied in changeset commit:cdmlib|17b0c5e7b5ebc5dbe384f62928c3b394d5bb9ece.
- 07:08 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- Alternatively we may check if it is possible to adapt getSynonymsByHomotypicGroup() such that less data is initialized.
- 06:39 AM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- The reason for this problem is, that the TaxonPortalController calls the ITaxonService.getSynonymsByHomotypicGroup() ...
- 11:52 AM bug #6222 (New): harmonize classification service return types for the data portal
- there is one service request which not yet returning TaxonNodeTDO object, this can cause problems in rare cases.
... - 11:44 AM task #6221 (New): mention the unplaced and excluded states in the taxon page
- Taxon nodes can be flagged with unplaced and excluded should this be mentioned in the portal page and how should it b...
- 11:39 AM feature request #6203: Implement unplaced and excluded in dataportal
- unplaced and excluded are handled correctly in the portal at least in the sense that the model change is not causing ...
- 09:45 AM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty
- I think it would be nice to implement it in a way similar to the bulkeditor, therefore we have to reconstruct the nam...
- 09:01 AM bug #6219: Deleting synonym is persisted immediately, but the editor is set dirty
- The preferred solution is to handle it similar to bulk editor where the deletion from database is invoked only with s...
11/24/2016
- 02:33 PM feature request #6203: Implement unplaced and excluded in dataportal
- Katja, could you have a look on this.
We definetely need to move the unplaced and excluded (in this order) taxa to... - 02:24 PM feature request #5616: Add the"Open in..." menu to taxon search
- 4b80789a fixed the "Open in ..." issue. However there are open questions related to orphaned taxa. See #6220.
- 01:34 PM feature request #5616: Add the"Open in..." menu to taxon search
- Katja Luther wrote:
> The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when ... - 02:21 PM bug #6220 (Feedback): Improve definition of orphaned taxon and synonym
- The fix works so far that search result in TaxEditor allow only opening in TaxEditor now. However, an orphaned taxon ...
- 01:35 PM bug #6220 (Resolved): Improve definition of orphaned taxon and synonym
- Applied in changeset commit:cdmlib|4b80789a6d183956c922de22091164555d2ef442.
- 01:32 PM bug #6220 (Closed): Improve definition of orphaned taxon and synonym
- Currently taxa are only orphaned if they have no taxon node AND no concept relationships. The later is critical as ta...
- 01:43 PM bug #4945 (Resolved): Right click menu for polytomous key node list view needs correct enabling
- 01:42 PM bug #4945 (New): Right click menu for polytomous key node list view needs correct enabling
- 01:42 PM bug #4945 (Resolved): Right click menu for polytomous key node list view needs correct enabling
- Applied in changeset commit:taxeditor|f81dda1f2c57e7a51be26ab87b68bebda8d0fee4.
- 01:39 PM feature request #5971 (Resolved): Implement database wide CdmPreference writing
- Applied in changeset commit:taxeditor|bb920fa17ba6147e45ad67cc651c703584cdcbd6.
- 01:18 PM bug #6219 (Closed): Deleting synonym is persisted immediately, but the editor is set dirty
- When deleting a synonym in name editor the deletion is persisted immediately. The editor is set dirty that looks like...
- 12:37 PM bug #5693 (Closed): Deleting a synonym only deletes the synonym relation
- This seems to be fixed also after model changes (removed synonym relationship class). However there are issues about ...
- 12:23 PM feature request #6198 (Closed): Remove synonym relationships in TaxEditor
- 12:03 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- Patrick Plitzner wrote:
> Patrick Plitzner wrote:
> > While reviewing I saw that even the isExcluded is not persist... - 11:16 AM bug #6218 (Closed): NPE when editing term vocabulary label
- When trying to edit the label of a new vocabulary (PresenceAbsenceTerm) I got the below NPE.
I think it happened wh... - 11:08 AM bug #6217: Adapt colour mapping in dataportals
- Projects that might want to use the feature are Caucasus and Asteracea which do have or plan to have multiple data po...
- 11:06 AM bug #6217 (New): Adapt colour mapping in dataportals
- Currently there is the possibility to adapt the color of a PresenceAbsenceTerm in a distribution map by using the acc...
- 10:58 AM feature request #6216 (Feedback): Allow changing of defaultColor for PresenceAbsenceTerm
- Works well and ticket can be closed. Only issues might be layout issues:
1. Personally I find it better to have a ... - 10:23 AM feature request #6216 (Resolved): Allow changing of defaultColor for PresenceAbsenceTerm
- Applied in changeset commit:taxeditor|cf4bd11fd2a394c795f744111f8b2cbf7f59f7e5.
- 10:21 AM feature request #6216 (Closed): Allow changing of defaultColor for PresenceAbsenceTerm
11/23/2016
- 05:01 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- Patrick Plitzner wrote:
> While reviewing I saw that even the isExcluded is not persisted anymore. Have to recheck i... - 04:19 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- While reviewing I saw that even the isExcluded is not persisted anymore. Have to recheck if anything has changed
- 04:11 PM bug #6211: massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- This seems to be caused by a cycle in the object graph which is either not detected or not handled correctly by json-...
- 03:54 PM bug #6210: Null values for boolean fields are causing PropertyAccessException
- This is still occurring for me:
* database restored from dump: cdm_integration_cichorieae_2016-11-10_06h25m.Thursd... - 02:11 PM bug #6210 (Resolved): Null values for boolean fields are causing PropertyAccessException
- Fixed with f3d4c9bc
- 03:45 PM bug #6206 (Closed): Vaadin view fail with: Failed to load the bootstrap javascript
- Vaadin works on the test server. Seems fine.
- 03:04 PM feature request #5841 (Resolved): Creating a new alternative in PolytomousKey Editor should set focus to new PKNode
- Applied in changeset commit:taxeditor|efd30f4b550d4e53206d2c5d5a720381a5663611.
- 02:55 PM bug #6215 (Resolved): NPE when opening preferences with no DB connection
- Applied in changeset commit:taxeditor|84ab8cb061709145c824967aa8a3a10742e875ff.
- 02:38 PM bug #6215 (Closed): NPE when opening preferences with no DB connection
- When trying to open the preferences for all "Taxonomic Editor"-"Taxonomic" submenus an NPE is thrown.
~~~
l... - 02:41 PM feature request #5971 (Feedback): Implement database wide CdmPreference writing
- 02:41 PM feature request #5971: Implement database wide CdmPreference writing
- Please move the new menu in between Extras/Window and Help. Help should always be the last in the row.
- 10:26 AM feature request #5971 (Resolved): Implement database wide CdmPreference writing
- Applied in changeset commit:taxeditor|0bd095d9fbccd25ce847af780892633284b314f9.
- 09:29 AM feature request #5971: Implement database wide CdmPreference writing
- Now we have a main menu admin. This menu should only be visible for admins or project manager.
- 02:27 PM feature request #5969 (Closed): Implement CdmPreference reading for database preferences
- I think we can close this ticket now. Open issues will be checked in #5971 and are more related to writing then reading
- 02:11 PM feature request #6203: Implement unplaced and excluded in dataportal
- > Unplaced taxon nodes should be put to an incertis sedis node in the tree. Excluded nodes should be put to an exclud...
- 01:59 PM bug #6212 (In Progress): api info incomplete in new swagger-ui
- the upgrade to swagger 2.0 solved the probelm partially. The Terms of Serivces whoever is still missing.
- 10:55 AM bug #6212 (In Progress): api info incomplete in new swagger-ui
- After updating swagger-ui to version 2.2.6 two of the api info entries are no longer show. The complete set of entrie...
- 11:15 AM bug #6214 (Closed): Add project specific preferences to CdmPreference menu
- For now we have two project specific preferences: RedList (EditorProfile->Rote Liste 2020) and Campanula (Specimens a...
- 11:10 AM feature request #6213 (Resolved): use separate tempfolder per store updater
- all tempfiles downloded by a storeupdater should go into a tempfolder exclusively used by this updater.
- 10:33 AM bug #6105 (Resolved): Make CdmPreferences editable in separate view
- 10:32 AM bug #6105: Make CdmPreferences editable in separate view
- This is done, see #5971
11/22/2016
- 10:18 AM bug #6206: Vaadin view fail with: Failed to load the bootstrap javascript
- Please review
- 10:03 AM bug #6206 (Resolved): Vaadin view fail with: Failed to load the bootstrap javascript
- Applied in changeset commit:cdm-vaadin|a45e5ee72e1bc48fec16b156617c746266e1ccb4.
- 09:32 AM bug #6206: Vaadin view fail with: Failed to load the bootstrap javascript
- I examined the situation more in depth:
1. The pom.xml in cdm-webapp was pretty much messed up in respect of th... - 09:19 AM bug #6206 (In Progress): Vaadin view fail with: Failed to load the bootstrap javascript
11/21/2016
- 05:27 PM bug #6211 (Closed): massive heap consumption by service endpoint /portal/taxon/{uuid}/synonymy
- some requests to /portal/taxon/{uuid}/synonymy are causing a massive heap consumption.
test case:
* http://int... - 03:57 PM bug #6209 (Resolved): NPE in DatasourceView
- Applied in changeset commit:taxeditor|af45abb87611c04e93d103bd7c7df6221ca9e877.
- 03:41 PM bug #6209: NPE in DatasourceView
- This was a really confusing error message. The original problem was that the remote database was not available.
- 03:05 PM bug #6209 (Closed): NPE in DatasourceView
- occurres when connection to remote datasource
~~~
java.lang.NullPointerException
at eu.etaxonomy.taxeditor.data... - 03:45 PM bug #6210 (Closed): Null values for boolean fields are causing PropertyAccessException
- test case: http://int.e-taxonomy.eu/cdmserver/integration_cichorieae/portal/taxon/6d711fa0-77c3-42df-9d44-83fdc78f348...
- 02:23 PM task #6208 (In Progress): Implement synonymy service responding with DTO
- The synonymy as returned by the is portal/taxon/{uuid}/synonymy is sometime quite huge and contains a lot of unused i...
- 10:16 AM bug #6130 (Closed): Areafilter widget broken
- works on the test server
- 10:12 AM bug #6130 (Resolved): Areafilter widget broken
- Applied in changeset commit:cdm-dataportal|ba127310d2b704049857de82c3c09e1bdc87092c.
- 09:51 AM feature request #6189 (Closed): Client adapter for Plazi treatment database
- implementation complete and released with UTIS version 1.2.1
11/19/2016
- 01:55 PM feature request #5727 (Closed): Offer German translation for texts used in molecular plugin
- Most translations have now been done. Translating will from now on be done directly in the development further of the...
11/17/2016
- 02:11 PM bug #6207: Import Salvador images
- Hallo,
zur Frage Image Server oder nicht: „Erstmal“ können wir das mit dem Standard Viewer machen, aber sobald wir m... - 02:05 PM bug #6207 (Closed): Import Salvador images
- Open issue(s):
* Quellenzitat im Titel (siehe #6207#note-6) => #6265
* rulebased thumbnails and move to mediaserv... - 12:18 PM bug #6206 (Closed): Vaadin view fail with: Failed to load the bootstrap javascript
- When testing any vaadin view the following error is shown
~~~
Failed to load the bootstrap javascript: ./../VAADI... - 12:13 PM bug #6200 (Closed): Exception when adding a new synonym (allowOverride)
- Update script has been adapted. Remove target version as this was a temporary issue only caused by model update comin...
- 11:40 AM feature request #6198 (Resolved): Remove synonym relationships in TaxEditor
- 11:39 AM feature request #5971: Implement database wide CdmPreference writing
- This is a subtask of the more general implementation described in #6105 (but more or less also a duplicate)
11/16/2016
- 05:29 PM bug #6199 (Feedback): Excluded note for excluded taxon nodes in TaxEdtior
- Looks like other additional languages are not stored correctly.
Also we may think about make it fully invisible as... - 05:25 PM feature request #6197 (Closed): Move excluded and unplaced from Taxon to TaxonNode in TaxEditor
- Works well. There is a follow up ticket #6205.
- 05:24 PM bug #6205 (Duplicate): Move excluded nodes to the bottom of the list in TaxEditor navigator
- ... and also ad a symbol to the node that shows that it is excluded.
We may also think about adding a "set to excl... - 05:17 PM feature request #6198 (Feedback): Remove synonym relationships in TaxEditor
- 05:16 PM feature request #6198: Remove synonym relationships in TaxEditor
- There is a more general issue related to #5523 and #5877.
Currently the synonym type is not handled correctly by t... - 05:13 PM feature request #6198: Remove synonym relationships in TaxEditor
- It looks like partial and pro parte is not persisted.
- 04:52 PM feature request #5778 (Closed): Update symbols for PresenceAbsenceTerms in existing databases
- 04:32 PM bug #5826 (Closed): Clean up names with empty name descriptions
- 04:23 PM feature request #5921 (Closed): Change symbol for congruence relationship.
- 04:21 PM feature request #5981 (Closed): Add abbreviation to Rank "Cultivar"
- 10:57 AM bug #4965: unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
- Please review the latest change 32e833cb
- 10:47 AM feature request #5634 (Closed): Excluded note for excluded taxa /taxon nodes
- 10:46 AM feature request #6204 (New): Show excludedNote in dataportal
- for more information see model change ticket #5634. The new field should be shown in the dataportal (maybe configurab...
- 10:43 AM feature request #5875 (Closed): Add isDefault flag to DescriptionBase
- 10:41 AM feature request #5951: Add collector, field number and collection to specimen search label
- A second cache field is now implemented (#5952) so we could start implementing a formatter (cache strategy ) and acco...
- 10:40 AM feature request #5952 (Closed): Second cache field for specimen (identityCache)
- 10:38 AM bug #5976 (Closed): Update sortIndex for potential nullValue sortIndexes
- 10:37 AM task #6089 (Closed): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
11/15/2016
- 05:28 PM bug #6199 (Resolved): Excluded note for excluded taxon nodes in TaxEdtior
- Applied in changeset commit:taxeditor|ac1659d4fb4bd6a0f42c5e3cef97dee1ccad7925.
- 05:27 PM bug #6200: Exception when adding a new synonym (allowOverride)
- In my case setting the only one existing preference for which code to use to 0 solved the problem. Before the value w...
- 12:29 PM bug #6200: Exception when adding a new synonym (allowOverride)
- This was probably an issue in the update script. Fixed now, but for database which already ran the update script you ...
- 12:24 PM bug #6200 (Resolved): Exception when adding a new synonym (allowOverride)
- Applied in changeset commit:cdmlib|b6ee6df472c8eaccb21369ebd429e9feacc78e36.
- 10:58 AM bug #6200 (Closed): Exception when adding a new synonym (allowOverride)
- 1. In any DB press enter in the name editor to create a new synonym
1. The following error is logged
~~~
org.h... - 03:03 PM feature request #3925 (Closed): Unplaced and excluded to TaxonNode
- 03:00 PM feature request #6203 (New): Implement unplaced and excluded in dataportal
- ~~The unplaced and excluded flags have been moved from Taxon to TaxonNode (#3925). This should be taken in account in...
- 02:54 PM bug #3658 (Closed): Update Nomenclatural code for datasources
- 02:53 PM bug #6202 (Worksforme): Disable "New" button in toolbar when editor is not connected
- The options are not filtered like those in the menu bar and can produce exceptions
- 02:50 PM bug #6201 (Closed): Adapt dataportal to the new synonym datamodel
- Synonym relationships have been removed. Synonyms do now directly link to accepted taxa. This needs to be adapted in ...
- 02:41 PM feature request #5971: Implement database wide CdmPreference writing
- allowOverride #5970 is now fixed, so we can finalize this task.
- 02:22 PM feature request #5970 (Closed): Implement allowOverride in CdmPreference
- 02:21 PM feature request #5970: Implement allowOverride in CdmPreference
- This is fully resolved now. Please update taxeditor accordingly if needed.
- 12:42 PM bug #5976 (Resolved): Update sortIndex for potential nullValue sortIndexes
- PKNode also implemented now. Should be resolved.
- 10:51 AM feature request #6198 (Resolved): Remove synonym relationships in TaxEditor
- Applied in changeset commit:taxeditor|69410b96c9c8e1e23d68cd782867171c2e1cd084.
- 10:50 AM feature request #6197 (Resolved): Move excluded and unplaced from Taxon to TaxonNode in TaxEditor
- Applied in changeset commit:taxeditor|3e194787899d08624921b3b5cbb109ebcc74b4f5.
11/14/2016
- 03:58 PM bug #6199: Excluded note for excluded taxon nodes in TaxEdtior
- Please ask Katja if unclear how to implement.
- 03:56 PM bug #6199 (Closed): Excluded note for excluded taxon nodes in TaxEdtior
- See related ticket #5634 for more information.
We need to add a multi-language field here. - 03:52 PM feature request #6198 (Closed): Remove synonym relationships in TaxEditor
- See parent ticket for more information.
The according elements have been commented in existing DetailsSection(s). ... - 03:48 PM feature request #6197 (Closed): Move excluded and unplaced from Taxon to TaxonNode in TaxEditor
- See parent ticket for more information.
The according field have been commented in existing DetailsSection(s). Ple... - 02:07 PM task #6196 (New): Assure robustness for situation when remote server become unavailable during download
- This is important for
* EUNIS
* PLazi (seems to crash in this case) - 01:05 PM bug #6195 (Resolved): Suppress footnotes in search results page
- Showing annotations in the results page is not only undesirable but also slows down the page rendering process.
- 09:44 AM bug #6131 (Closed): Vaadin DistributionEditor TODOS
11/11/2016
- 01:52 PM bug #6194 (Duplicate): can't enter a new reference from feature data (Faktendaten)
- 1. created description of a new fact for a taxon (Corvidae)
2. wanted to add a reference
3. reference was not yet i... - 12:35 PM bug #6192 (New): taxon annotations only shown when 'Show accepted taxon on top of the synonymy' is enabled
- taxon annotations are missing when 'Show accepted taxon on top of the synonymy' is not enabled in http://portal.cyb...
- 12:12 PM bug #6157: Consider implementing quick setup button "Quick Singlepage Configuration'"
- Walter: Diese Beschreibung habe ich in die Doku aufgenommen - wenn das anders implementiert wird, bitte bescheid sagen.
11/10/2016
- 02:47 PM feature request #6189 (Resolved): Client adapter for Plazi treatment database
- Applied in changeset commit:utis-core|420508434ae9f5db5878b34784f97b590d8f816a.
11/09/2016
- 02:57 PM bug #6191: Update context menu in name editor after "Change to accepted taxon"
- This behavior was observed during the Rote Liste 2020 Workshop in Nov. 2016
- 12:37 PM bug #6191 (Worksforme): Update context menu in name editor after "Change to accepted taxon"
- menu options are not refreshed after operation is done
- 11:33 AM bug #6190 (Closed): remove svn property place holder in first line of code
- The first line of almost each java code file is a special place holder '// $Id$' which was meant to be replaced by th...
- 09:47 AM feature request #6189 (Closed): Client adapter for Plazi treatment database
- You can get all the treatment UUIDs from any of our RSS feeds (e.g. http://tb.plazi.org/GgServer/xml.rss.xml), includ...
11/08/2016
- 04:41 PM bug #6115: protect cdm content by drupal permission
- I fixed the above described bug. Please test again.
NOTE: There is a new section in the description on how to test... - 04:38 PM bug #6115 (Resolved): protect cdm content by drupal permission
- Applied in changeset commit:cdm-dataportal|239c4040ea26be2c36b2344e4aa276f27bee55db.
- 01:34 PM bug #6115: protect cdm content by drupal permission
- Andreas Müller wrote:
> Currently the taxon tree is still shown at Flora Malesiana: http://test.e-taxonomy.eu/datapo... - 01:15 PM bug #6115: protect cdm content by drupal permission
- Currently the taxon tree is still shown at Flora Malesiana: http://test.e-taxonomy.eu/dataportal/preview/flora-malesi...
- 12:27 PM bug #6115 (In Progress): protect cdm content by drupal permission
- The protection can be by passed by accesing the the content via the drupal node integration. An according check must ...
- 04:22 PM bug #6186 (Rejected): Drupal nodes are created even if Create drupal nodes is off
- cannot reproduce this
I tested this with the following portals in which all CDM nodes have been deleted now:
*... - 12:29 PM bug #6186 (Worksforme): Drupal nodes are created even if Create drupal nodes is off
- This refers to the setting admin/config/cdm_dataportal/settings#edit-cdm-drupal-node-creation
- 03:07 PM feature request #6041 (In Progress): Change the label of "Set as basionym of homotypical group"
- 02:47 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
- Set back to unassigned CDM tickets as first child tickets have to be resolved.
- 02:40 PM feature request #6188 (New): Make "Set as basionym of homotypical group" an optional function
- See parent ticket. Still needs discussion if this is really wanted.
- 02:36 PM feature request #6187 (New): [DISCUSS] Ask W.Greuter about "type providing name"
- See parent ticket
- 02:32 PM bug #6174 (Closed): LIE when deleting new name
- Seems to be fixed
- 01:45 PM bug #6023 (Closed): configuration problems with maven-antrun-plugin
- Seems to work. I also tested the latest build on a machine with java 1.7 installed (pesihpc) and got no problems.
- 01:38 PM bug #6176 (Closed): Creating a new Reference throws TOE (TransientObjectException)
- Seems to be fixed. I remove target version as it was a temporary regression only.
- 01:36 PM feature request #5972: Prevent user from unwanted author and reference updates
- It looks like it wokrs only for references until now. But we need it for all objects (if this is difficult, at least ...
- 01:34 PM feature request #5972 (Feedback): Prevent user from unwanted author and reference updates
- I would change the label to "This reference is referenced by xxx records. The change will take for all these records....
- 12:11 PM bug #5692 (Closed): Delete a person within the bulk editor deletes the person even if not saved
- Seems to be fully fixed now. Great.
- 12:04 PM bug #5680 (Closed): Out-of-Memory when editing TaxonInteraction
- Seems to be fixed. There might be some other such issues. See #3841
- 09:34 AM bug #5680 (Resolved): Out-of-Memory when editing TaxonInteraction
- Applied in changeset commit:cdmlib|4b5eb627a4a79b7dfb7588779e1ef566a69c8ecc.
- 09:33 AM bug #5680: Out-of-Memory when editing TaxonInteraction
- The problem was the naming of the getter method for description. It was getDescriptions() but should be getDescriptio...
- 10:21 AM task #6158: Update EDIT documentation from svn to git
- Also generally try to update the site where necessary. E.g. java version is now 1.7
- 09:36 AM bug #6077 (Closed): Import of gathering images
11/07/2016
- 12:17 PM bug #6023 (Resolved): configuration problems with maven-antrun-plugin
- Applied in changeset commit:cdmlib|1ddde622ae10b01976cdb99fb50a469a5506ca7e.
- 12:17 PM bug #6023 (In Progress): configuration problems with maven-antrun-plugin
- 10:43 AM bug #5862: Spring needs online resources during launch
- a much better solution is to let the versions be managed through the pom.xml of cdmlib-parent:
~~~xml
<dependen... - 10:41 AM bug #5862 (Resolved): Spring needs online resources during launch
- Applied in changeset commit:cdmlib-apps|a6c3d024c6c3121786f55c474655f4f1dd2fd2a2.
11/04/2016
- 12:42 PM bug #5862 (In Progress): Spring needs online resources during launch
- This can be solved by adding the spring dependency which provides the missing xsd file in the jar.
I fixed this fo... - 09:25 AM bug #5692 (Resolved): Delete a person within the bulk editor deletes the person even if not saved
- The transient objects can be deleted now without exception see #6175
- 09:23 AM bug #6159: improve distribution editor in TaxEditor
- @AM and @Patrick
please have a look if this is ok for next week. - 09:19 AM bug #6176 (Resolved): Creating a new Reference throws TOE (TransientObjectException)
- 09:19 AM bug #6176: Creating a new Reference throws TOE (TransientObjectException)
- Andreas Müller wrote:
> Sorry, I think I have to reopen this ticket for a general question.
>
> I do not understa...
11/03/2016
- 04:58 PM bug #6175 (Closed): Exception when deleting transient object
- Seems to work now. Remove target version as this issue was only a temporary regression. Fixed in v4.4 snapshot
- 02:19 PM bug #6175: Exception when deleting transient object
- Applied in changeset commit:taxeditor|734218f995535b1920b9feb5eab9e91141e0c536.
- 02:18 PM bug #6175 (Resolved): Exception when deleting transient object
- This was related to the last change in the bulk editor that the objects which should be deleted are marked as deleted...
- 09:34 AM bug #6175: Exception when deleting transient object
- I think that this is not related to the getReletatedObjectsCount problem. This was easily fixed by checking if the en...
- 04:47 PM bug #5870 (Closed): NPE when trying to open a synonym (or taxon) that has been deleted
- 04:42 PM bug #6122 (Feedback): add titleCache service
- There still seems to be an issue as the result for cuba classification on test is empty: http://test.e-taxonomy.eu:80...
- 04:35 PM bug #6122: add titleCache service
- Please review
- 04:39 PM bug #6180 (Rejected): NoSuchMethodException: getUuidAndTitleCacheTaxon on attempt to add taxon to TaxonInteraction
- In deed I was using an incompatible editor
- 01:02 PM bug #6180 (Resolved): NoSuchMethodException: getUuidAndTitleCacheTaxon on attempt to add taxon to TaxonInteraction
- This is probably a version issue as otherwise a compilation error should occur. Please check.
- 12:22 PM bug #6180 (Rejected): NoSuchMethodException: getUuidAndTitleCacheTaxon on attempt to add taxon to TaxonInteraction
- To reprododuce:
* data source http://test.e-taxonomy.eu/cdmserver/phycobase/
1. Create new description for any ... - 04:30 PM bug #6129 (Closed): After creating a new Reference in selection dialog, it could not be found in the selection dialog
- 03:57 PM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog
- Seems to work now.
- 04:18 PM bug #6176 (Feedback): Creating a new Reference throws TOE (TransientObjectException)
- Sorry, I think I have to reopen this ticket for a general question.
I do not understand why the "getReferencingObj... - 04:09 PM bug #6176 (Closed): Creating a new Reference throws TOE (TransientObjectException)
- Seems to be fixed. As it was only a temporary regression within v4.4 snapshot caused by #5972 I remove the target ver...
- 09:39 AM bug #6176: Creating a new Reference throws TOE (TransientObjectException)
- added a check for the id to confirm whether the entitiy is new or not. This fixed the problem.
- 09:38 AM bug #6176 (Resolved): Creating a new Reference throws TOE (TransientObjectException)
- Applied in changeset commit:taxeditor|384b41bd24d4ca11f044bb6cce1f8fc5845e621c.
- 04:05 PM bug #6178 (Duplicate): TOE Exception when creating a new Reference
- Looks like this was fixed together with #6178. As it was only a temporary regression within v4.4 snapshot I remove th...
- 03:46 PM feature request #5972 (Resolved): Prevent user from unwanted author and reference updates
- 03:44 PM bug #6181: Deleting a misapplied name does not set the dirty flag
- So this is an other issue for our save strategy ticket (please link). Because this is unclear for the user who expect...
- 03:03 PM bug #6181: Deleting a misapplied name does not set the dirty flag
- That is correct because it is already persisted to the DB. This is because the deletion of the misapplied name is a s...
- 02:57 PM bug #6181 (In Progress): Deleting a misapplied name does not set the dirty flag
- This happens in NameEditor.
Found in v4.4 snapshot. - 03:32 PM bug #5948 (Closed): supress protologue icon if according media uri is missing
- Seems to be fixed. I only found a related Editor issue #6182.
- 03:30 PM bug #6182 (Rejected): Emptying protolog URI does not work
- The protolog URI field can not be fully emptied but only deleted.
If you empty the protolog field and save this no... - 02:48 PM bug #5676 (Feedback): Sensu does not show up if no author exists for secundum reference
- This seems to work fine now.
The only open question is "Also I wonder if it is wanted behavior, that the publicati... - 02:19 PM bug #6174 (Resolved): LIE when deleting new name
- Applied in changeset commit:cdmlib|645658b9cc716e53f2a6ccf1d8d200c771c1a4c6.
- 02:09 PM bug #6174: LIE when deleting new name
- this is fixed by changing the args of isDeletable to UUID.
- 09:30 AM bug #6174: LIE when deleting new name
- the original exception is :
~~~ text
org.hibernate.LazyInitializationException: failed to lazily initialize a col... - 09:43 AM bug #6179 (New): Use @RestController where appropriate
a good summary : https://dzone.com/articles/spring-framework-restcontroller-vs-controller?edition=237194&utm_source...- 09:41 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- The media bulk editor is fixed now see Revision f1a1a089. The problem of deleting a transient object still exists.
11/02/2016
- 11:52 PM bug #6176: Creating a new Reference throws TOE (TransientObjectException)
- This is very similar to #6178 (but not exactly a duplicate I guess)
- 05:14 PM bug #6176 (Closed): Creating a new Reference throws TOE (TransientObjectException)
- What I did:
* Open reference bulk editor
* Create a new Reference via "new", e.g. "Test Reference" (Generic)
* W... - 11:51 PM bug #6178: TOE Exception when creating a new Reference
- This issue is very similar to #6176 (but not exactly a duplicate I guess)
- 11:48 PM bug #6178 (Duplicate): TOE Exception when creating a new Reference
- I tried to add a new nomencl. reference via "Create a new Reference in Reference selection dialog.
This caused the f... - 08:28 PM feature request #6058 (Feedback): Store NamedArea dialog filters more individually
- All Area lists like (geoscope in classification or PolytomousKey) seem to handle "Add" and "Edit" differently which d...
- 07:34 PM feature request #5891 (Closed): Taxon appended phrase should not allow empty string
- Fixed
- 07:09 PM bug #5888 (Closed): Deleting factual data does not work (dirty flag not set)
- Seems to work
- 06:31 PM bug #5800 (Closed): Remove "Taxonomically Included In" from list of concept relationship types
- Seems to work. There is a related issue #6177.
- 06:30 PM bug #6177 (New): Taxon Concept relationship type not editable in details view
- For some reason the Relationship Type field in the Taxon Concept relationship details view is not editable.
I can't ... - 06:01 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- While testing I found 3 other issues that might be related. #6174, #6175, #6176. Please check if they are regressions...
- 06:00 PM bug #5692 (Feedback): Delete a person within the bulk editor deletes the person even if not saved
- Looks like Media bulk editor is not yet fixed! All others seem to work.
- 03:15 PM bug #6175 (Closed): Exception when deleting transient object
- What I did
* Open bulk editor (name or agent)
* Run a search (with >0 results)
* Create a new record
* Immediat... - 03:05 PM bug #6174: LIE when deleting new name
- It looks like the error does not happen always. So please play around a bit, also with different order for save, sear...
- 02:54 PM bug #6174 (Closed): LIE when deleting new name
- What I did:
* Open name bulk editor
* Create new name (e.g. Testus species)
* Save
* Search for Testus*
* Dele... - 02:01 PM bug #6165 (Rejected): distributionInfoFor service no longer respects the statsusColors parameter
- This issue is a data issue related to merges of presence absence terms (#5778). The hardcoded colors have been change...
11/01/2016
- 02:17 PM feature request #5970: Implement allowOverride in CdmPreference
- Katja Luther wrote:
> we also need to update the databases, do you have to include it into your update script alread... - 01:04 PM feature request #5970 (Feedback): Implement allowOverride in CdmPreference
- we also need to update the databases, do you have to include it into your update script already?
- 01:31 PM bug #5800 (Resolved): Remove "Taxonomically Included In" from list of concept relationship types
- Applied in changeset commit:taxeditor|a368dac3747c8f43872f78f3ef83bd7ac69007d3.
- 01:17 PM bug #5870 (Resolved): NPE when trying to open a synonym (or taxon) that has been deleted
- This is already solved, the message is that the cdm entity could not be found in the database
- 01:06 PM feature request #5971 (In Progress): Implement database wide CdmPreference writing
- Now it is implemented on editor side, we need the update of the CdmPreference table (allowOverride) to complete it (s...
- 10:02 AM bug #5660 (Closed): Rename Name Relationship to Name Relationships in Name Details View
- close this ticket because it does not need a review.
- 10:01 AM bug #5660 (Resolved): Rename Name Relationship to Name Relationships in Name Details View
- Applied in changeset commit:taxeditor|62d710d7f41510465bbfe9f1c82bcf0ac86b3d7a.
10/31/2016
- 04:46 PM bug #5693 (Resolved): Deleting a synonym only deletes the synonym relation
- I need to check this also against the new synonym implementation in CDM model.
- 04:41 PM bug #6160 (Feedback): Add preservation method and stage as sub class to DefinedTerm
- 04:40 PM bug #6160: Add preservation method and stage as sub class to DefinedTerm
- I do not understand this. Classes are not meant to distinguish semantics of defined terms. This is what TermType enum...
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