Activity
From 10/12/2016 to 11/10/2016
11/10/2016
- 04:30 PM Revision e7c1e4aa (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 02:49 PM Revision 9c48245f (cdmlib): delete TestCase from BioCaseQueryServiceWrapper
- 02:47 PM feature request #6189 (Resolved): Client adapter for Plazi treatment database
- Applied in changeset commit:utis-core|420508434ae9f5db5878b34784f97b590d8f816a.
- 02:47 PM Revision 42050843 (utis-core): fix #6189 per client adapter store locations
- 01:50 PM Revision 0d2ee5d6 (taxeditor): fix #4461 fix ordering for Datasource View
- 01:50 PM Revision 266b34fd (taxeditor): cleanup
- 01:50 PM Revision 9e4b94cb (taxeditor): ref #3658 remove nomenclatural code from datasources
- 01:50 PM Revision df95e395 (taxeditor): cleanup
- 01:50 PM Revision 10644642 (taxeditor): ref #3658 remove nomenclatural code from datasources
- 01:50 PM Revision bdd1bcf5 (taxeditor): ref #5974 Remove synonym relationships (rename synRelType to synRel and others)
- 01:50 PM Revision 5215f59f (taxeditor): ref #3658 remove nomenclatural code from datasources
- 01:50 PM Revision d34abf30 (taxeditor): ref #5974 Remove synonym relationships (compiling)
- 01:45 PM Revision 5521f23c (cdm-vaadin): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdm-vaadin into develop
- 01:32 PM Revision 92afad3d (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- Conflicts:
app-import/src/main/java/eu/etaxonomy/cdm/app/common/CdmDestinations.java
app-import/src/main/java/eu/et... - 01:09 PM Revision f3fc1024 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/description/TaxonInteraction.java
cdmlib-services/src/... - 12:54 PM Revision b6e8ecc0 (cdmlib-apps): Cleanup and remove deprecated method
- 12:53 PM Revision 1ba3392b (cdmlib-apps): Update Salvador import
- 12:48 PM Revision e25fecb9 (cdmlib): cleanup
- 12:16 PM Revision b93db3a5 (utis-core): ref #6189 plazi: lastModified detection implemented
11/09/2016
- 04:08 PM Revision 49bb0781 (taxeditor): i18n for AuthenticationUserBar
- 02:57 PM bug #6191: Update context menu in name editor after "Change to accepted taxon"
- This behavior was observed during the Rote Liste 2020 Workshop in Nov. 2016
- 12:37 PM bug #6191 (Worksforme): Update context menu in name editor after "Change to accepted taxon"
- menu options are not refreshed after operation is done
- 11:33 AM bug #6190 (Closed): remove svn property place holder in first line of code
- The first line of almost each java code file is a special place holder '// $Id$' which was meant to be replaced by th...
- 10:00 AM Revision 5f2d88e1 (utis-core): first commit of PLAZIClient with test - not tested
- 09:47 AM feature request #6189 (Closed): Client adapter for Plazi treatment database
- You can get all the treatment UUIDs from any of our RSS feeds (e.g. http://tb.plazi.org/GgServer/xml.rss.xml), includ...
11/08/2016
- 04:41 PM bug #6115: protect cdm content by drupal permission
- I fixed the above described bug. Please test again.
NOTE: There is a new section in the description on how to test... - 04:38 PM bug #6115 (Resolved): protect cdm content by drupal permission
- Applied in changeset commit:cdm-dataportal|239c4040ea26be2c36b2344e4aa276f27bee55db.
- 01:34 PM bug #6115: protect cdm content by drupal permission
- Andreas Müller wrote:
> Currently the taxon tree is still shown at Flora Malesiana: http://test.e-taxonomy.eu/datapo... - 01:15 PM bug #6115: protect cdm content by drupal permission
- Currently the taxon tree is still shown at Flora Malesiana: http://test.e-taxonomy.eu/dataportal/preview/flora-malesi...
- 12:27 PM bug #6115 (In Progress): protect cdm content by drupal permission
- The protection can be by passed by accesing the the content via the drupal node integration. An according check must ...
- 04:37 PM Revision 239c4040 (cdm-dataportal): fix #6115 adding missing permission check to cdm nodes integration
- 04:22 PM bug #6186 (Rejected): Drupal nodes are created even if Create drupal nodes is off
- cannot reproduce this
I tested this with the following portals in which all CDM nodes have been deleted now:
*... - 12:29 PM bug #6186 (Worksforme): Drupal nodes are created even if Create drupal nodes is off
- This refers to the setting admin/config/cdm_dataportal/settings#edit-cdm-drupal-node-creation
- 03:07 PM feature request #6041 (In Progress): Change the label of "Set as basionym of homotypical group"
- 02:47 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
- Set back to unassigned CDM tickets as first child tickets have to be resolved.
- 02:40 PM feature request #6188 (New): Make "Set as basionym of homotypical group" an optional function
- See parent ticket. Still needs discussion if this is really wanted.
- 02:36 PM feature request #6187 (New): [DISCUSS] Ask W.Greuter about "type providing name"
- See parent ticket
- 02:32 PM bug #6174 (Closed): LIE when deleting new name
- Seems to be fixed
- 02:29 PM Revision b22621fd (cdm-vaadin): ref #5458 Avoid possible exception for case sensitive root node column
- 02:23 PM Revision ae5a0d99 (cdmlib): Minor changes to classification clone method
- 02:22 PM Revision 104cc879 (cdmlib): Clean up
- 02:21 PM Revision a6f3a18c (cdmlib): Clean up deprecated methods in name service
- 02:00 PM Revision 9bb42d8a (cdm-vaadin): ref #5458 Fix node retrieval for classification
- 01:53 PM Revision bea4aa93 (cdm-vaadin): ref #5458 label for null selection (remove status)
- 01:48 PM Revision 8a6e2f9a (cdm-vaadin): ref #5458 Refresh titlecache of named area vocabularies
- 01:47 PM Revision f9ea11c9 (cdm-vaadin): ref #5458 Allow one-click selection for status term
- 01:45 PM bug #6023 (Closed): configuration problems with maven-antrun-plugin
- Seems to work. I also tested the latest build on a machine with java 1.7 installed (pesihpc) and got no problems.
- 01:40 PM Revision 82a22019 (cdmlib): Cleanup
- 01:38 PM bug #6176 (Closed): Creating a new Reference throws TOE (TransientObjectException)
- Seems to be fixed. I remove target version as it was a temporary regression only.
- 01:36 PM feature request #5972: Prevent user from unwanted author and reference updates
- It looks like it wokrs only for references until now. But we need it for all objects (if this is difficult, at least ...
- 01:34 PM feature request #5972 (Feedback): Prevent user from unwanted author and reference updates
- I would change the label to "This reference is referenced by xxx records. The change will take for all these records....
- 12:11 PM bug #5692 (Closed): Delete a person within the bulk editor deletes the person even if not saved
- Seems to be fully fixed now. Great.
- 12:04 PM bug #5680 (Closed): Out-of-Memory when editing TaxonInteraction
- Seems to be fixed. There might be some other such issues. See #3841
- 09:34 AM bug #5680 (Resolved): Out-of-Memory when editing TaxonInteraction
- Applied in changeset commit:cdmlib|4b5eb627a4a79b7dfb7588779e1ef566a69c8ecc.
- 09:33 AM bug #5680: Out-of-Memory when editing TaxonInteraction
- The problem was the naming of the getter method for description. It was getDescriptions() but should be getDescriptio...
- 10:26 AM Revision c9181133 (cdmlib): ref #4866 Set sec reference for taxa when cloning classification
- 10:21 AM task #6158: Update EDIT documentation from svn to git
- Also generally try to update the site where necessary. E.g. java version is now 1.7
- 10:04 AM Revision 211add74 (taxeditor): smaller changes to display taxon interactions
- 10:04 AM Revision 935960dc (taxeditor): ref #6176: the referencingObjectsCount is only called for wizards not in details view
- 09:48 AM Revision a663859a (cdmlib): minor
- 09:46 AM Revision aede647b (cdmlib-apps): adapt getDescription() see #5680
- 09:42 AM Revision 4b321494 (cdm-vaadin): ref #5458 Fix node retrieval and taxonTree refresh
- 09:36 AM bug #6077 (Closed): Import of gathering images
- 09:32 AM Revision 205b4b75 (cdmlib): missed to add the adapted test
- 09:28 AM Revision 4b5eb627 (cdmlib): fix #5680: get method needs to be named like the attribute
- 09:16 AM Revision ba0e4a8c (cdm-vaadin): ref #5458 Allow null selection to remove distribution status
11/07/2016
- 01:04 PM Revision 6dd0db6f (cdmlib): switching maven-jetty plugin back to jdk 1.7 compatible version
- 12:35 PM Revision ef6db0d3 (cdm-vaadin): lowering java target version to 1.7
- 12:17 PM bug #6023 (Resolved): configuration problems with maven-antrun-plugin
- Applied in changeset commit:cdmlib|1ddde622ae10b01976cdb99fb50a469a5506ca7e.
- 12:17 PM bug #6023 (In Progress): configuration problems with maven-antrun-plugin
- 12:16 PM Revision 1ddde622 (cdmlib): fix #6023 solving compatibility problems of aspectj with java 1.8 and fixing invalid path reference
- 11:45 AM Revision ab7b3cd1 (cdm-vaadin): fixing dependency management problems
- - letting versions be managed through cdmlib-parent
- depending project on cdmlib-remote
- removing classes clone... - 11:45 AM Revision ca950879 (cdm-vaadin): removing scope provided from launcher
- 11:45 AM Revision 479b0055 (cdm-vaadin): simplifying dependencies in pom.xml (using scope 'compile' where appropriate)
- 11:45 AM Revision 974ae00d (cdm-vaadin): updating DataSourceConfigurer with new code from cdmlib-remote - THIS IS REALLY UGLY!
- 11:45 AM Revision d436d94e (cdm-vaadin): adding developer logging config to ide launcher
- 11:45 AM Revision c7bddd78 (cdm-vaadin): gitignore
- 11:45 AM Revision 201dfb32 (cdm-vaadin): ref #5862 adding missing dependency to provide missing xsd when offline
- 11:45 AM Revision 2693d2d2 (cdm-vaadin): fixing startup, dependency problems of jetty
- - fixed for eclipse ide
- fixed for maven-jetty plugin - 11:45 AM Revision 0cb4f241 (cdm-vaadin): setting vaadin production mode to true - globally
- 11:45 AM Revision abbbb46c (cdm-vaadin): disabling SuperDev mode which is now on by default
- 11:45 AM Revision cd760b09 (cdm-vaadin): fixing double servlet mapping
- 11:45 AM Revision 25c1d6d8 (cdm-vaadin): fixin project setup:
- - solving maven warnings
- solving some dependency problems (itextpdf, ...)
- solving dependency probelms with je... - 11:28 AM Revision 5a9620a0 (cdmlib): updating maven-jetty plugin
- 10:43 AM bug #5862: Spring needs online resources during launch
- a much better solution is to let the versions be managed through the pom.xml of cdmlib-parent:
~~~xml
<dependen... - 10:41 AM bug #5862 (Resolved): Spring needs online resources during launch
- Applied in changeset commit:cdmlib-apps|a6c3d024c6c3121786f55c474655f4f1dd2fd2a2.
- 10:41 AM Revision a6c3d024 (cdmlib-apps): fix #5862 by correctly managing dependencies
- 10:31 AM Revision dd998643 (cdmlib-apps): managing cdmlib dependencies
- 09:52 AM Revision 96661f94 (cdmlib): smaller changes for abcd import
- 09:51 AM Revision 2704bbc5 (cdmlib): revert adding error log
- 09:43 AM Revision 3522e0b1 (cdmlib): minor
- 09:42 AM Revision 57089e91 (cdmlib): minor
- 09:33 AM Revision ce790c77 (cdmlib): ref #6166: import siblings if an specimen and smaller changes in ABCD
- import
11/06/2016
- 02:22 PM Revision 66e8ec64 (cdmlib): ref #4866 Fix transient object exception
- - fixed typo
- 02:21 PM Revision 5d3fd02f (taxeditor): ref #4867 Implement "Clone Classification" functionality
- - availabel via context menu in taxon navigator
- parameters available: classification name, taxon relation from clo... - 01:00 PM Revision cea52158 (cdmlib): ref #5449 Imporvements for CSV export
- - Fix initialization problems
- Correctly match taxon name to chosen classification
- allow export for single leaf ... - 01:00 PM Revision 7d8eced5 (cdmlib): ref #4866 Test for first implementation for clone classification
- 01:00 PM Revision 7e313273 (cdmlib): ref #4866 Create new description set when cloning taxon (avoid
- HibernateException)
- 01:00 PM Revision 355c89cb (cdmlib): ref #4866 First implementation for clone classification (including test)
11/04/2016
- 11:20 PM Revision 1925e9f2 (cdm-vaadin): ref #5974 Fix synonymRelationship issues in vaadin
- 05:01 PM Revision 35b0416a (cdmlib): adapt gestGetUuidAndTitleCache data to new model
- 04:19 PM Revision f35df403 (cdmlib-apps): change the versions to 4.4
- 04:12 PM Revision 4bcc0c85 (cdmlib): fix compile error in ITaxonNodeService
- 03:04 PM Revision b811f6b1 (cdm-vaadin): cleanup
- 02:48 PM Revision 3df95930 (cdm-vaadin): Update test H2 in vaadin to new model
- 02:47 PM Revision 47936c60 (cdm-vaadin): ref #5974 remove synonym relationship and other model changes
- 02:36 PM Revision e82b27f2 (cdm-vaadin): cleanup
- 02:09 PM Revision 0e522f9f (cdm-vaadin): ref #5974 Remove synonym relationships
- 02:08 PM Revision 4b6abd7e (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxonNodeService.java - 12:42 PM bug #5862 (In Progress): Spring needs online resources during launch
- This can be solved by adding the spring dependency which provides the missing xsd file in the jar.
I fixed this fo... - 09:25 AM bug #5692 (Resolved): Delete a person within the bulk editor deletes the person even if not saved
- The transient objects can be deleted now without exception see #6175
- 09:23 AM bug #6159: improve distribution editor in TaxEditor
- @AM and @Patrick
please have a look if this is ok for next week. - 09:19 AM bug #6176 (Resolved): Creating a new Reference throws TOE (TransientObjectException)
- 09:19 AM bug #6176: Creating a new Reference throws TOE (TransientObjectException)
- Andreas Müller wrote:
> Sorry, I think I have to reopen this ticket for a general question.
>
> I do not understa...
11/03/2016
- 04:58 PM bug #6175 (Closed): Exception when deleting transient object
- Seems to work now. Remove target version as this issue was only a temporary regression. Fixed in v4.4 snapshot
- 02:19 PM bug #6175: Exception when deleting transient object
- Applied in changeset commit:taxeditor|734218f995535b1920b9feb5eab9e91141e0c536.
- 02:18 PM bug #6175 (Resolved): Exception when deleting transient object
- This was related to the last change in the bulk editor that the objects which should be deleted are marked as deleted...
- 09:34 AM bug #6175: Exception when deleting transient object
- I think that this is not related to the getReletatedObjectsCount problem. This was easily fixed by checking if the en...
- 04:47 PM bug #5870 (Closed): NPE when trying to open a synonym (or taxon) that has been deleted
- 04:42 PM bug #6122 (Feedback): add titleCache service
- There still seems to be an issue as the result for cuba classification on test is empty: http://test.e-taxonomy.eu:80...
- 04:35 PM bug #6122: add titleCache service
- Please review
- 04:39 PM bug #6180 (Rejected): NoSuchMethodException: getUuidAndTitleCacheTaxon on attempt to add taxon to TaxonInteraction
- In deed I was using an incompatible editor
- 01:02 PM bug #6180 (Resolved): NoSuchMethodException: getUuidAndTitleCacheTaxon on attempt to add taxon to TaxonInteraction
- This is probably a version issue as otherwise a compilation error should occur. Please check.
- 12:22 PM bug #6180 (Rejected): NoSuchMethodException: getUuidAndTitleCacheTaxon on attempt to add taxon to TaxonInteraction
- To reprododuce:
* data source http://test.e-taxonomy.eu/cdmserver/phycobase/
1. Create new description for any ... - 04:30 PM bug #6129 (Closed): After creating a new Reference in selection dialog, it could not be found in the selection dialog
- 03:57 PM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog
- Seems to work now.
- 04:18 PM bug #6176 (Feedback): Creating a new Reference throws TOE (TransientObjectException)
- Sorry, I think I have to reopen this ticket for a general question.
I do not understand why the "getReferencingObj... - 04:09 PM bug #6176 (Closed): Creating a new Reference throws TOE (TransientObjectException)
- Seems to be fixed. As it was only a temporary regression within v4.4 snapshot caused by #5972 I remove the target ver...
- 09:39 AM bug #6176: Creating a new Reference throws TOE (TransientObjectException)
- added a check for the id to confirm whether the entitiy is new or not. This fixed the problem.
- 09:38 AM bug #6176 (Resolved): Creating a new Reference throws TOE (TransientObjectException)
- Applied in changeset commit:taxeditor|384b41bd24d4ca11f044bb6cce1f8fc5845e621c.
- 04:05 PM bug #6178 (Duplicate): TOE Exception when creating a new Reference
- Looks like this was fixed together with #6178. As it was only a temporary regression within v4.4 snapshot I remove th...
- 03:46 PM feature request #5972 (Resolved): Prevent user from unwanted author and reference updates
- 03:44 PM bug #6181: Deleting a misapplied name does not set the dirty flag
- So this is an other issue for our save strategy ticket (please link). Because this is unclear for the user who expect...
- 03:03 PM bug #6181: Deleting a misapplied name does not set the dirty flag
- That is correct because it is already persisted to the DB. This is because the deletion of the misapplied name is a s...
- 02:57 PM bug #6181 (In Progress): Deleting a misapplied name does not set the dirty flag
- This happens in NameEditor.
Found in v4.4 snapshot. - 03:32 PM bug #5948 (Closed): supress protologue icon if according media uri is missing
- Seems to be fixed. I only found a related Editor issue #6182.
- 03:30 PM bug #6182 (Rejected): Emptying protolog URI does not work
- The protolog URI field can not be fully emptied but only deleted.
If you empty the protolog field and save this no... - 02:48 PM bug #5676 (Feedback): Sensu does not show up if no author exists for secundum reference
- This seems to work fine now.
The only open question is "Also I wonder if it is wanted behavior, that the publicati... - 02:41 PM Revision 08a29cf3 (taxeditor): the pattern for new created nomenclatural references with nomenclatural title is the nomenclatural title not titlecache
- 02:19 PM bug #6174 (Resolved): LIE when deleting new name
- Applied in changeset commit:cdmlib|645658b9cc716e53f2a6ccf1d8d200c771c1a4c6.
- 02:09 PM bug #6174: LIE when deleting new name
- this is fixed by changing the args of isDeletable to UUID.
- 09:30 AM bug #6174: LIE when deleting new name
- the original exception is :
~~~ text
org.hibernate.LazyInitializationException: failed to lazily initialize a col... - 02:19 PM Revision 734218f9 (taxeditor): fix #6175: transient objects are not marked as deleted in bulk editor only removed from model
- 02:04 PM Revision 645658b9 (cdmlib): fix #6174: isDeletable needs to be called with UUID and the objects is
- loaded on server side
- 10:12 AM Revision 87f819cf (cdmlib): ref #5458 Add classification filter to service method
- 10:12 AM Revision e8a3d3c8 (cdm-vaadin): ref #5458 Fix potential SQL query syntax exception
- 09:52 AM Revision a4f62469 (taxeditor): add a new DeleteMediaConfiguratorComposite
- 09:49 AM Revision 6fe75af3 (cdmlib): fix media deletion
- 09:43 AM bug #6179 (New): Use @RestController where appropriate
a good summary : https://dzone.com/articles/spring-framework-restcontroller-vs-controller?edition=237194&utm_source...- 09:41 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- The media bulk editor is fixed now see Revision f1a1a089. The problem of deleting a transient object still exists.
- 09:40 AM Revision f1a1a089 (taxeditor): fix the deletion of media in bulk editor
- 09:37 AM Revision 384b41bd (taxeditor): fix #6176: check if entity is new
11/02/2016
- 11:52 PM bug #6176: Creating a new Reference throws TOE (TransientObjectException)
- This is very similar to #6178 (but not exactly a duplicate I guess)
- 05:14 PM bug #6176 (Closed): Creating a new Reference throws TOE (TransientObjectException)
- What I did:
* Open reference bulk editor
* Create a new Reference via "new", e.g. "Test Reference" (Generic)
* W... - 11:51 PM bug #6178: TOE Exception when creating a new Reference
- This issue is very similar to #6176 (but not exactly a duplicate I guess)
- 11:48 PM bug #6178 (Duplicate): TOE Exception when creating a new Reference
- I tried to add a new nomencl. reference via "Create a new Reference in Reference selection dialog.
This caused the f... - 08:28 PM feature request #6058 (Feedback): Store NamedArea dialog filters more individually
- All Area lists like (geoscope in classification or PolytomousKey) seem to handle "Add" and "Edit" differently which d...
- 07:34 PM feature request #5891 (Closed): Taxon appended phrase should not allow empty string
- Fixed
- 07:09 PM bug #5888 (Closed): Deleting factual data does not work (dirty flag not set)
- Seems to work
- 06:31 PM bug #5800 (Closed): Remove "Taxonomically Included In" from list of concept relationship types
- Seems to work. There is a related issue #6177.
- 06:30 PM bug #6177 (New): Taxon Concept relationship type not editable in details view
- For some reason the Relationship Type field in the Taxon Concept relationship details view is not editable.
I can't ... - 06:01 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- While testing I found 3 other issues that might be related. #6174, #6175, #6176. Please check if they are regressions...
- 06:00 PM bug #5692 (Feedback): Delete a person within the bulk editor deletes the person even if not saved
- Looks like Media bulk editor is not yet fixed! All others seem to work.
- 04:01 PM Revision ad0d2649 (cdm-vaadin): ref #5458 Notify user when taxon tree is loading
- 03:15 PM bug #6175 (Closed): Exception when deleting transient object
- What I did
* Open bulk editor (name or agent)
* Run a search (with >0 results)
* Create a new record
* Immediat... - 03:05 PM bug #6174: LIE when deleting new name
- It looks like the error does not happen always. So please play around a bit, also with different order for save, sear...
- 02:54 PM bug #6174 (Closed): LIE when deleting new name
- What I did:
* Open name bulk editor
* Create new name (e.g. Testus species)
* Save
* Search for Testus*
* Dele... - 02:01 PM bug #6165 (Rejected): distributionInfoFor service no longer respects the statsusColors parameter
- This issue is a data issue related to merges of presence absence terms (#5778). The hardcoded colors have been change...
- 12:40 PM Revision 246e313b (cdm-vaadin): ref #5458 Clear caches when re-initializing table view
- 12:04 PM Revision f5b90187 (cdm-vaadin): ref #5458 Performance and usability
- - avoid re-initialization of distribution settings
- removed Save button - 09:19 AM Revision 787028b1 (cdm-vaadin): ref #5458 Fix some intitialization problems
11/01/2016
- 04:41 PM Revision 4103187a (cdmlib): ref #5458 Added find-by-titleCache method for taxon node service
- 03:50 PM Revision f9517a12 (cdm-vaadin): ref #5458 Add taxon filter to distribution settings
- 02:17 PM feature request #5970: Implement allowOverride in CdmPreference
- Katja Luther wrote:
> we also need to update the databases, do you have to include it into your update script alread... - 01:04 PM feature request #5970 (Feedback): Implement allowOverride in CdmPreference
- we also need to update the databases, do you have to include it into your update script already?
- 02:00 PM Revision 4a72ff97 (cdm-vaadin): ref #5458 Improve performance for taxon tree in settings dialog
- - more efficient caching
- 01:31 PM bug #5800 (Resolved): Remove "Taxonomically Included In" from list of concept relationship types
- Applied in changeset commit:taxeditor|a368dac3747c8f43872f78f3ef83bd7ac69007d3.
- 01:31 PM Revision a368dac3 (taxeditor): fix #5800: remove taxonomically included from menu
- 01:17 PM bug #5870 (Resolved): NPE when trying to open a synonym (or taxon) that has been deleted
- This is already solved, the message is that the cdm entity could not be found in the database
- 01:06 PM feature request #5971 (In Progress): Implement database wide CdmPreference writing
- Now it is implemented on editor side, we need the update of the CdmPreference table (allowOverride) to complete it (s...
- 01:03 PM Revision 9d8df0cf (taxeditor): ref #5971: don't allow to edit local nomenclatural code if allowOverride is false
- 12:41 PM Revision b7bfcde7 (taxeditor): ref #5971: minor
- 12:16 PM Revision be140ab3 (taxeditor): ref #5971: add an admin page to the prefs and add cdm pref nomenclatural code
- 10:02 AM bug #5660 (Closed): Rename Name Relationship to Name Relationships in Name Details View
- close this ticket because it does not need a review.
- 10:01 AM bug #5660 (Resolved): Rename Name Relationship to Name Relationships in Name Details View
- Applied in changeset commit:taxeditor|62d710d7f41510465bbfe9f1c82bcf0ac86b3d7a.
- 10:01 AM Revision 62d710d7 (taxeditor): fix #5660: rename Name Relationship to Name Relationships
10/31/2016
- 04:46 PM bug #5693 (Resolved): Deleting a synonym only deletes the synonym relation
- I need to check this also against the new synonym implementation in CDM model.
- 04:41 PM bug #6160 (Feedback): Add preservation method and stage as sub class to DefinedTerm
- 04:40 PM bug #6160: Add preservation method and stage as sub class to DefinedTerm
- I do not understand this. Classes are not meant to distinguish semantics of defined terms. This is what TermType enum...
10/28/2016
- 10:34 AM Revision 5aa29971 (cdmlib): abcd import: association type living culture is a parent child relation
- 10:31 AM Revision d0216fc5 (taxeditor): minor
- 10:10 AM feature request #6170 (Feedback): Selfregistration widget
- The selfregistration widget will allow users to create a user account without interaction with a user manager.
For... - 09:00 AM Revision 759b48f8 (cdm-vaadin): Revert "fixing mvn dependencies to fix test setup for jetty launcher"
- This reverts commit d111e4ee89477f3f5a71d8965a8d95d9d564ea9f.
10/27/2016
- 07:31 PM Revision 4f39e7d4 (taxeditor): CDMSequenceMatrixAdapter now exports sequence metadata.
- 06:07 PM Revision d111e4ee (cdm-vaadin): fixing mvn dependencies to fix test setup for jetty launcher
- 05:49 PM Revision e2f3badb (cdm-vaadin): adding new launcher for eclipse Jetty Integration
- 03:55 PM Revision 95857d53 (taxeditor): Bug fix: CDMSequenceMatrixAdapter now does not create CharacterSetIntervalEvents if the alignment has no columns.
- 11:24 AM Revision 2e52d3ee (cdm-vaadin): ref #5458 Changed URI for distribution and concept editor
- 11:19 AM Revision b5f17980 (cdm-vaadin): ref #5458 Fix exception for non-unique column ids
- 08:50 AM Revision c15014c2 (taxeditor): Add key listener to remote login dialog
- - pressing enter in the password field or selecting the connect button
with the keyboard only will now also connect
10/26/2016
- 05:31 PM Revision ba1551d6 (taxeditor): Merge branch 'LibrAlign' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into LibrAlign
- 05:31 PM Revision c80496ea (taxeditor): Merge branch 'LibrAlign' of https://dev.e-taxonomy.eu/git/taxeditor into LibrAlign
- # Conflicts:
# eu.etaxonomy.taxeditor.molecular.lib/.classpath
# eu.etaxonomy.taxeditor/rcp.target - 04:08 PM Revision 8f1d102f (cdm-vaadin): ref #5458 Fix class cast exception
- 04:02 PM Revision 44123d65 (cdm-vaadin): ref #5458 Sort named areas
- 03:54 PM Revision f957f84d (taxeditor): change herbarium to collection
- 03:23 PM Revision f8b0de79 (cdm-vaadin): ref #5458 Fix item initialization problems
- 02:56 PM Revision fe7f0131 (cdm-vaadin): ref #5458 Use service based on UuidAndTitleCache to build taxon tree
- 02:31 PM feature request #6166 (Closed): In ABCD import also import all siblings of a culture or tissue sample
- actually we only get the associated units of an unit, but for a derivate of a culture or a tissue sample we also want...
- 11:09 AM Revision 100e37d9 (cdmlib): ref #2380 Implement service for getting parent of
- UuidAndTitleCache<TaxonNode>
- parent of either ITaxonTree or UuidAndTitleCache<TaxonNode>
can be retrieved
- adde... - 10:20 AM bug #6165 (Rejected): distributionInfoFor service no longer respects the statsusColors parameter
- The below request includes the statusColors parameter:
http://api.cybertaxonomy.org/cyprus/portal/description/dist... - 10:05 AM Revision 0f1f1072 (taxeditor): Merge branch 'develop' into LibrAlign
- 10:04 AM Revision 63892e70 (taxeditor): Add spring oauth2 dependency
10/25/2016
- 04:55 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm instances
- Andreas Müller wrote:
> I guess this is was done long time. Can you please check.
The taxon navigator still uses ... - 04:52 PM Revision 321a37d1 (cdmlib): ref #2380 Implement service for getting children of
- UuidAndTitleCache<TaxonNode>
- direct children of either ITaxonTree or UuidAndTitleCache<TaxonNode>
can be retrieve... - 02:54 PM task #6005 (Rejected): Create subprojects of EDIT platform components
- We have discussed the idea of using subprojects for the EDIT platform components and have decided against this.
Clos... - 12:09 PM bug #6164 (New): cyprus: invalid data causing crash in modifier editor
- Adding a new Modifier vocabulary to the cyprus database causes an exception on save (stack trace below).
This is p... - 10:43 AM bug #6163: can't add media to observation/specimen anymore
- As a first step, I activated the possibility to add media to occurence data in the bulk editor.
- 10:08 AM bug #6163 (New): can't add media to observation/specimen anymore
- Use case: entering an observation with image
Problems: can't choose "Observation" when using the new Specimen Expl... - 10:42 AM Revision b04853ae (taxeditor): ref #6163: in occurence bulk editor it is possible to add media
- 10:05 AM feature request #6162 (New): Implement "Forgot your password?" button in the Taxeditor connect dialog
- This is a successor of #6161
- 09:58 AM feature request #6161 (Closed): Service and webservice to recover forgotten passwords
- The password recovery function allows users to request for a password recovery link which is send to the user via ema...
10/24/2016
- 05:30 PM bug #6088: New reproducable multiple representations exception for name relationships
- I found another way to reproduce this:
1. Open taxon in name editor
1. Add a new name relation (do NOT save)
... - 05:00 PM feature request #1362 (Rejected): Version number should be located at one place
- The version number of the TaxEditor is located at one place (except the version number in plugin.xml of each plugin) ...
- 02:30 PM bug #5693 (Closed): Deleting a synonym only deletes the synonym relation
- This is solved with commit:08a698afd5a98944fb4558599fc04dc24282a51a
- 02:14 PM feature request #5972 (In Progress): Prevent user from unwanted author and reference updates
- @AM Please have a look whether the message is ok or if it should be bigger or other text...
- 02:11 PM Revision 84269784 (taxeditor): ref #5972: the wizard warns the user if the reference is used ssomewhere else
- 01:47 PM feature request #3573 (Resolved): Improve EDITOR import UI configuration panel
- Applied in changeset commit:taxeditor|3c066c3d21e5c32b5afd0dc5f673ea91fa07c3b4.
- 01:47 PM Revision 3c066c3d (taxeditor): fix #3573 Add non-generic configurator page to ABCD import wizard
- 01:36 PM Revision c0c46413 (taxeditor): #ref #5496 Do not show any terms for preservation method and stage
- preferences
- 01:29 PM bug #6160 (Rejected): Add preservation method and stage as sub class to DefinedTerm
- We need this in order to filter correctly when displaying all available terms
- 01:07 PM bug #6159: improve distribution editor in TaxEditor
- improve the selection of distribution areas in preferences and fix some smaller issues in the distribution editor its...
- 11:15 AM bug #6159 (Closed): improve distribution editor in TaxEditor
- Improving the distribution editor and selection of areas used in distribution editor
we should handle the saving s... - 01:05 PM Revision e45ed4d5 (taxeditor): ref #6159: minor
- 01:05 PM Revision 8407c42c (taxeditor): ref #6159: fix that some column show no data
- 01:02 PM Revision 91cdf81a (cdmlib): fix #4453 Enhance portal visualization of molecular data
- - used DefinedTerm constants for UUIDS
- used titleCache for all DerivedUnits
- move string representations to po... - 01:02 PM Revision 2c23b054 (cdm-dataportal): fix #4453 Enhance portal visualization of molecular data
- - used DefinedTerm constants for UUIDS
- used titleCache for all DerivedUnits
- move string representations to po... - 01:01 PM Revision 876be37d (cdmlib): add test for ermIdInVocabularyComparator
- 12:54 PM Revision e111542f (cdmlib): fix TermIdInVocabularyComparator
- 12:35 PM Revision 102e44cd (taxeditor): Fix potential NPE
- 10:33 AM Revision 0de43613 (cdmlib): move taxonnode needs to save old parent and child node
- 10:31 AM bug #5967: Adapt default update site to production update site.
- I vote for not adding a new issue. I think the standard user only runs one instance which usually is the stable relea...
- 10:20 AM task #6158 (Closed): Update EDIT documentation from svn to git
- the documentation stills refers to the old svn repositories. We should change this to git and also link to git develo...
- 09:27 AM Revision c6476daa (taxeditor): Merge branch 'develop' into LibrAlign
- # Conflicts:
# eu.etaxonomy.taxeditor.molecular.lib/.classpath
10/22/2016
- 02:36 PM Revision c37c8506 (taxeditor): Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.)
- Adjustments to recent changes in JPhyloIO.
10/21/2016
- 05:48 PM Revision 9278d6a7 (cdm-dataportal): solving autoscroll problems in taxon tree
- 04:45 PM Revision 6de6d849 (cdmlib): Improve taxon delete test
- 04:45 PM Revision 15566c6f (cdmlib): ref #5974 implement substitute method for TaxonService.getAllRelationships
- 04:41 PM Revision fd469b65 (cdmlib): update path to dataset.xsd in persistence test data
- 04:02 PM bug #6157 (New): Consider implementing quick setup button "Quick Singlepage Configuration'"
- More an more portal are configured with tabless taxonpages. A specific setup is required for this to look pleasant
... - 03:37 PM bug #6152 (Closed): Classification incomplete in WoRMS taxa
- completed
- 01:34 PM bug #6152 (Closed): Classification incomplete in WoRMS taxa
- *NOTE: This issue has been imported from bitbucket (issue 14). All timestamps have been reset during the import.*
... - 03:15 PM feature request #6156 (Closed): implement service to resolve the taxonomic parents of a taxon
- 03:12 PM feature request #6156 (Closed): implement service to resolve the taxonomic parents of a taxon
- 03:02 PM feature request #6145 (Closed): provide data on direct taxonomic children of a taxa
- This has been implemented by introducing the `/classification/{taxonId}/children` webservice.
- 01:17 PM feature request #6145 (Closed): provide data on direct taxonomic children of a taxa
- *NOTE: This issue has been imported from bitbucket (issue 7). All timestamps have been reset during the import.*
... - 02:54 PM Revision 22eb2e66 (cdmlib-apps): fix localH2 username in eFlora
- 02:52 PM Revision f4682883 (cdmlib-apps): ref #3925 fix excluded flag for Cuba
- 02:50 PM Revision 23f817ca (cdmlib-apps): Cleanup and gitignore in app-import
- 02:48 PM Revision 4688a314 (cdmlib-apps): Cleanup app-import test data
- 02:47 PM Revision 42ae65a2 (cdmlib): Cleanup merge model 4.1/develop
- 02:40 PM bug #6151: implement pager for search service
- For the time until the pager is really implemented I worked on the interim solution by relaxing the max hit setting f...
- 01:30 PM bug #6151 (In Progress): implement pager for search service
To save time I decided to change the strategy. I will not implement a general pager mechanism into utis. Not all ...- 01:29 PM bug #6151 (Closed): implement pager for search service
- UTIS is not retuning all possible results from the connected providers.
A pager for search service should be imple... - 02:26 PM Revision 4e14e4cb (cdmlib): Merge remote-tracking branch 'origin/develop' into develop
- 02:20 PM Revision a8b0ad5f (cdmlib): ref #5972: add service method to get count of referencing objects
- 01:43 PM feature request #6155 (Closed): hide the empty higherClassification property from the taxon object serialization
- implemented and tested
- 01:42 PM feature request #6155 (Closed): hide the empty higherClassification property from the taxon object serialization
- *NOTE: This issue has been imported from bitbucket (issue 17). All timestamps have been reset during the import.*
... - 01:41 PM feature request #6154 (Closed): optional inclusion of the parentTaxon into the search responses
- implemented and tested
- 01:38 PM feature request #6154 (Closed): optional inclusion of the parentTaxon into the search responses
- *NOTE: This issue has been imported from bitbucket (issue 16). All timestamps have been reset during the import.*
... - 01:36 PM bug #6153 (Closed): NPE during classification/{uuid}/parent request
fixed by commit commit:utis-core|d7a90b5
- 01:35 PM bug #6153 (Closed): NPE during classification/{uuid}/parent request
- http://cybertaxonomy.eu:80/eu-bon/utis/1.2/classification/0EB6CA37-3365-4AF5-A800-8FC4B8C366FA/parent?providers=pesi&...
- 01:28 PM bug #6150 (Closed): missing and wrongly maped data in EEA_BDC_Client resonses
- *originally closed on 2015-11-06*
DONE! - 01:28 PM bug #6150 (Closed): missing and wrongly maped data in EEA_BDC_Client resonses
- *NOTE: This issue has been imported from bitbucket (issue 12). All timestamps have been reset during the import.*
... - 01:27 PM feature request #6149 (Closed): EUNIS: periodically update local EEA data
- *originally closed on 2015-10-29*
implemented - 01:26 PM feature request #6149 (Closed): EUNIS: periodically update local EEA data
- *NOTE: This issue has been imported from bitbucket (issue 11). All timestamps have been reset during the import.*
... - 01:25 PM feature request #6148 (Closed): generate java client api based on swagger data
- *originally closed on 2015-11-06*
the client is available at http://dev.e-taxonomy.eu/gitweb/utis-client.git - 01:24 PM feature request #6148 (Closed): generate java client api based on swagger data
- *NOTE: This issue has been imported from bitbucket (issue 10). All timestamps have been reset during the import.*
... - 01:23 PM feature request #6147 (Closed): EUNIS: use offline rdf as suggested by EEA
- *originally closed on 2015-10-29*
this is fixed - 01:22 PM feature request #6147 (Closed): EUNIS: use offline rdf as suggested by EEA
- *NOTE: This issue has been imported from bitbucket (issue 9). All timestamps have been reset during the import.*
-... - 01:21 PM bug #6146 (New): The checklist details of the Response object are missing in xml responses
- *NOTE: This issue has been imported from bitbucket (issue 8). All timestamps have been reset during the import.*
-... - 01:15 PM feature request #6144 (Closed): the classsification object is not reflecting all possible ranks
- *originally closed on 2015-11-06*
this is fixed, the taxon object now has a list of 'higherClassificationInfo' o... - 01:09 PM feature request #6144 (Closed): the classsification object is not reflecting all possible ranks
- *NOTE: This issue has been imported from bitbucket (issue 6). All timestamps have been reset during the import.*
-... - 12:26 PM feature request #6143 (Closed): Classification.clazz should be serialized as class
- *originally closed on 2015-01-19*
done!
- 12:25 PM feature request #6143: Classification.clazz should be serialized as class
- Using a mixin has been tested
* ClassificationMixIn.class :
* SpringMVCConfig.getJsonViewResolver()
~~~ java... - 12:24 PM feature request #6143 (Closed): Classification.clazz should be serialized as class
- *NOTE: This issue has been imported from bitbucket (issue 5). All timestamps have been reset during the import.*
-... - 12:22 PM feature request #6142 (Closed): vernacular name search
- 12:20 PM feature request #6142: vernacular name search
- *originally closed on 2015-01-19*
implemented - 12:20 PM feature request #6142 (Closed): vernacular name search
- *NOTE: This issue has been imported from bitbucket (issue 4). All timestamps have been reset during the import.*
-... - 12:18 PM feature request #6141 (Closed): search with wildcard (like search) possible
- *originally closed on 2015-01-19*
implemented - 12:18 PM feature request #6141 (Closed): search with wildcard (like search) possible
- NOTE: This issue has been imported from bitbucket (issue 3). All timestamps have been reset during the import.
---... - 12:17 PM feature request #6140 (Closed): Create Terms of Service page and link it
- originally closed on 2015-01-19
- 12:16 PM feature request #6140 (Closed): Create Terms of Service page and link it
- NOTE: This issue has been imported from bitbucket (issue 2). All timestamps have been reset during the import.
---- - 12:15 PM bug #6139 (Closed): NPE in UtisController.search()
- *originally closed on 2015-01-19*
- 12:14 PM bug #6139 (Closed): NPE in UtisController.search()
- *NOTE: This issue has been imported from bitbucket. All timestamps have been reset during the import.*
----
The... - 12:08 PM Revision 4f080228 (utis-core): relaxing max result limit for BgbmEditClient - requires cdm 4.4.0 to be released
- 12:06 PM Revision 0842c388 (cdmlib): enabling http POST for a couple of name catalogue controller methods
- 11:48 AM feature request #5616: Add the"Open in..." menu to taxon search
- Katja Luther wrote:
> The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when ... - 10:09 AM feature request #5616: Add the"Open in..." menu to taxon search
- The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when it is not used in a cla...
- 10:13 AM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog
- please have a look, if everything works as expected now.
- 08:43 AM Revision 41f187f1 (cdm-vaadin): ref #5458 Validation for settings dialogs
- 08:04 AM Revision 073d62ba (cdm-vaadin): ref #5458 Refactor SQLException handling
- 07:48 AM Revision 58dba687 (cdm-vaadin): ref #6131 Refactor settings dialog
- - extracted abstract class
- set style for OK/Cancel button
10/20/2016
- 05:55 PM Revision 54d20fb4 (cdm-vaadin): ref #5458 Remove generated scss files and add them to .gitignore
- 05:10 PM feature request #6058 (Resolved): Store NamedArea dialog filters more individually
- 05:09 PM Revision be719c48 (taxeditor): ref #6058 store named area filters more individually
- 04:04 PM Revision 4dea3eee (cdmlib): Merge remote-tracking branch 'origin/develop' into develop
- Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonNode.java
cdmlib-persistence/src/main/java/... - 03:59 PM feature request #5616: Add the"Open in..." menu to taxon search
- Andreas Müller wrote:
> The first issue seems to be fixed.
>
> Handling of orphaned taxa still does not work (nei... - 03:54 PM Revision 1435cedf (utis-client): bumping version to 1.2.0
- 03:45 PM bug #6101 (Closed): NPE when having multiple lanugage support disabled
- 03:20 PM Revision 2a495461 (taxeditor): Removed p6spy from classpath
- 03:00 PM Revision b30beda3 (taxeditor): minor changes for name details view configuration
- 03:00 PM Revision 568bfd14 (utis-webapp): Merge branch 'release/1.2.0'
- Conflicts:
pom.xml - 02:59 PM Revision 023bb80c (utis-webapp): bumping version to 1.2.0
- 02:52 PM Revision b7d7bc83 (utis-core): bumping version to 1.3.0-SNAPSHOT
- 02:52 PM Revision df91100b (utis-core): Merge tag '1.2.0' into develop
- tagging release 1.2.0
- 02:51 PM Revision 81e6fa25 (utis-core): Merge branch 'release/1.2.0'
- 02:50 PM Revision 20f01ac2 (utis-core): bumping version to 1.2.0
- 02:49 PM Revision 92a6f1d1 (utis-core): improving ambiguous test case
- 02:26 PM Revision f32ec72f (taxeditor): add the nameDetails configuration
- 02:13 PM Revision 924c6e0a (taxeditor): minor
- 01:59 PM bug #6138 (Closed): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
- this test fails with
~~~ text
Caused by: org.h2.jdbc.JdbcSQLException: Eindeutiger Index oder Primärschlüssel ve... - 01:55 PM feature request #6050 (New): provide the possibility to choose the fields of the simple details view for names
- the configuration is implemented now, please have a look, if it is ok or if more fields should be configurable.
- 01:55 PM feature request #6050 (Resolved): provide the possibility to choose the fields of the simple details view for names
- Applied in changeset commit:taxeditor|76b874f88b5e44d9cf572760d39fecad6a99cdf7.
- 01:55 PM Revision 76b874f8 (taxeditor): fix #6050: add the possibility to configure which fields should be displayed in name details view
- 01:10 PM Revision 8840fbf0 (utis-webapp): optional deduplication of the result set by different methods
- 01:04 PM Revision 7ae4f425 (cdmlib): childNode needs to be saved in TestService to fix the editor test
- 12:56 PM Revision 78587134 (taxeditor): fix test
- 12:11 PM Revision 3a1af46b (cdmlib): set test to ignore, create ticket to fix this.
- 12:10 PM Revision 1a9b03bb (cdmlib): fix failing test
- 11:44 AM Revision 7ae6b88e (cdmlib): minor
10/19/2016
- 09:50 PM task #6137 (In Progress): Urgent imports
- Moose RL(#2934, #4670)
PESI
Moose (E+M) (#10229)
Seleneae (#10242)
MCL (#10048)
Uzbekistan #8996 (taxa... - 08:44 PM bug #6136 (New): Implement type providing name in homotypical group
- For discussion see #6041.
Still need to decide if this is really the best solution.
Ask Greuther.
Is there alwa... - 07:14 PM task #6135 (Closed): Remove authors from Taxonomische Großgruppe
- ... or make it configurable
Taxonomische Großgruppe
* Autorenschaft soll da nicht angezeigt werden
Was meint... - 07:13 PM feature request #6134 (Closed): Allow grouping by Taxonomische Großgruppe
- - Ja, wir brauchen auch eine Gruppierung nach den Taxonomischen Gruppen wie von dir beschrieben.
OK, versuche ich e... - 07:03 PM feature request #6133: Improve Rank Webservice
- /termVocabulary/ef0d1ce1-26e3-4e83-b47b-ca74eed40b1b/terms.json?orderBy=BY_ORDER_INDEX_ASC
- Ich dachte, die Ränge ... - 07:02 PM feature request #6133 (Closed): Improve Rank Webservice
- * ~~Filter ranks by those used in Edaphobase~~
* ~~Or if use findByMarker add sortindex/order ranks by sortindex~~... - 06:48 PM feature request #6128: Include authorship in taxon search web service
- SL: Bis jetzt haben wir einfach angenommen, dass alles, was angezeigt wird, auch durchsuchbar ist. Wir brauchen diese...
- 05:49 PM Revision 2598d085 (utis-core): setting problematic tests to ignore (these clients are not officially supported in utis)
- 05:33 PM Revision 577c70db (utis-webapp): fix #16 adding parentTaxon parameter to search endpoint
- 05:32 PM Revision cc2fc25c (utis-core): fix #16 optional inclusion of the parentTaxon into the search responses fully implemented
- 04:31 PM Revision 9b52adf5 (utis-core): solving #17 and preparing #16 \n - #17 hide the empty higherClassification property from the taxon object serialization\n - #16 optional inclusion of the parentTaxon into the search responses
- 04:29 PM Revision 813eb4bc (utis-core): fixing higherClassification mode in EUNIS Client
- 01:16 PM Revision b16cfdc4 (utis-core): higherClassification action test for PESIClient
- 12:18 PM Revision 5c8b52af (cdm-vaadin): ref #5458 Add property formatting for distribution table
- 12:01 PM Revision 3fe30b48 (utis-core): test for PESIClient
- 11:42 AM Revision d7a90b5c (utis-core): fixing #15 NPE during classification/{uuid}/parent request
10/18/2016
- 07:51 PM Revision c872e418 (cdmlib): Merge remote-tracking branch 'origin/cdm-4.1' into develop
- 07:50 PM Revision 904c8661 (cdmlib): minor
- 07:31 PM Revision b72cb56a (cdmlib): remaining merge issue for morge develop to cdm4.1
- 06:52 PM Revision aabd8c12 (cdmlib): Merge remote-tracking branch 'origin/develop' into cdm-4.1
- Conflicts:
cdmlib-db/pom.xml
cdmlib-ext/pom.xml
cdmlib-io/pom.xml
cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/exc... - 06:45 PM Revision d196eb4d (cdm-vaadin): ref #5458 Usability and UI tweaks
- 06:40 PM bug #6129 (Resolved): After creating a new Reference in selection dialog, it could not be found in the selection dialog
- Applied in changeset commit:taxeditor|5a8a1f1453f51d9a99421a6d137f707c266a08b7.
- 06:40 PM feature request #5891 (Resolved): Taxon appended phrase should not allow empty string
- Applied in changeset commit:taxeditor|ceaa3fed461d7c19d3fc124917b4bbfeb35d3f36.
- 06:40 PM Revision 8f8aae13 (cdm-dataportal): whitespace
- 06:38 PM Revision e8d43aef (cdm-dataportal): whitespace
- 06:36 PM feature request #5634: Excluded note for excluded taxa /taxon nodes
- Applied in changeset commit:cdmlib|1e55f5c2544860c52cea161e4edcff5ef2e1bbfa.
- 05:45 PM feature request #5634 (Resolved): Excluded note for excluded taxa /taxon nodes
- 06:36 PM feature request #5974 (Resolved): Remove synonym relationships
- Applied in changeset commit:cdmlib|d7fa3e131995dd5543514aa3afd71fdd31b59bf5.
- 06:36 PM feature request #5952: Second cache field for specimen (identityCache)
- Applied in changeset commit:cdmlib|7e03e21e1ae317b2fc610adf44deabb82083a083.
- 05:57 PM Revision b8e7047b (cdm-vaadin): ref #5458 Performance increase for taxon node selection
- - by using SqlContainer the nodes are lazily loaded
- child nodes are loaded via a second SQL query which is filtere... - 05:55 PM Revision a8118bab (cdm-vaadin): ref #5458 remove distribution selection view
- 05:52 PM Revision 84f54e17 (cdmlib): update remote-webapp test H2 to model 4.1
- 05:51 PM Revision 1e55f5c2 (cdmlib): fix #5634 Update excluded/unplaced for TaxonNodes with no taxon_id
- 05:17 PM Revision c3c1740f (cdmlib): minor
- 04:53 PM Revision d7fa3e13 (cdmlib): fix #5974 fix moving synonym type to TaxonBase and SynonymRelationType label
- 04:07 PM Revision e0af1680 (cdmlib): fix clone test for Media
- 04:00 PM Revision ced4a690 (cdmlib): remove final from classification.description
- 03:58 PM Revision c10a757f (cdmlib): minor
- 03:58 PM Revision 8e6c53f9 (cdmlib): ref #5634 fix clone issue for excludedNote
- 03:57 PM Revision 4cf3d32a (cdmlib): Cleanup language string handling and cloning
- 02:16 PM Revision 33b908b7 (cdmlib): minor
- 02:15 PM Revision b362a2c0 (cdmlib): ref #5952 Add index to identityCache
- 02:14 PM Revision 3f43c155 (cdmlib): cleanup
- 02:13 PM Revision 4bfde47a (cdmlib): ref #3658 further improvements for NomCode update
- 02:11 PM Revision 45c1a780 (cdmlib): #5634 Add excludedNote to TaxonNode (still some tests not running)
- 02:07 PM Revision 1402e210 (cdmlib): ref #3925 Adapt tests for moving unplaced and excluded
- 11:13 AM Revision c2f0001b (taxeditor): ref #6050: test git/redmine and add the pref keys for configurable details view
- 10:37 AM Revision 3b0bc0db (cdm-vaadin): ref #5458 performance tweak for distribution status selection
- 10:29 AM Revision 08a698af (cdmlib): ref #6099: removing cascading to child nodes and adapting the service and persistence layer
- 10:28 AM bug #6099: Duration of save is increasing
- to reduce the saving time we removed the cascading to the child taxa.
please test the editor, if everything works as... - 09:59 AM Revision 88b1995d (cdmlib): ref #5431: the type designation blocks the name deletion only if it is the type name
- 09:20 AM bug #6120 (Closed): Cleanup uuidAndTitleCache methods
- tested all selection dialogs where it is used and it seems to work.
10/17/2016
- 06:18 PM bug #6131 (Closed): Vaadin DistributionEditor TODOS
- - ~~ok/cancel button in settings window -> same min width~~
- ~~if only 1 classification -> autoselect~~
- ~~NPE wh... - 05:32 PM bug #6130: Areafilter widget broken
- Typing in the text field is no longer filtering the selection of areas
- 05:30 PM bug #6130 (Closed): Areafilter widget broken
- This is a regression which might have been introduced while solving #6087
- 05:25 PM Revision e11ccba6 (cdm-vaadin): ref #5458 UI tweak for settings window
- 01:31 PM Revision 32bf574c (cdm-vaadin): ref #5458 Add support for setting distribution status filter in settings
- 01:30 PM Revision bd46f97b (cdm-vaadin): ref #5458 Fix potential NPE
- 01:15 PM Revision 5a8a1f14 (taxeditor): fix #6129: remove additional authorstring in selection dialog search field
- 01:13 PM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog
- This is because the search pattern is created out of the abbrevTitleCache concatinated with the authorstring.
Removi... - 01:10 PM bug #6129 (Closed): After creating a new Reference in selection dialog, it could not be found in the selection dialog
- mail von Norbert:
ich möchte sicherheitshalber nochmal an meine Bugmeldung vom 28.7.16 erinnern, welche vielleicht... - 01:00 PM Revision 0f09a07c (cdm-vaadin): ref #5458 Fix initial opening of settings window
- 12:59 PM Revision dc4aa464 (cdm-vaadin): ref #5458 Layout for settings windows
- 12:47 PM Revision 5eece89f (cdm-vaadin): ref #5458 Split settings window into two
- - one for distribution/taxonomy settings and one for other setting
- 10:12 AM Revision ceaa3fed (taxeditor): fix #5891: save null instead of empty string for text fields
10/16/2016
- 09:30 PM feature request #6128 (Closed): Include authorship in taxon search web service
- /portal/taxon/find?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&doTaxa=1&pageNumber=0&pageSize=10&query={qu...
10/14/2016
- 05:10 PM Revision 4229bb22 (cdmlib): ref #5826 adapt update script
- 04:35 PM feature request #3363 (In Progress): dagger (Totenkreuz) after extinct and fossil taxa
- 04:26 PM feature request #3925 (Resolved): Unplaced and excluded to TaxonNode
- 04:16 PM Revision 745b0cdf (cdmlib): Correct errors in update script
- 04:13 PM Revision 98053545 (cdmlib): ref #3925 Move excluded and unplaced to TaxonNode
- 04:12 PM task #6028 (Closed): Post-migration (trac->redmine) fixes
- The obsolete custom fields have all been disabled and can be deleted.
- 03:46 PM task #6020 (Closed): Consider replacing custom field 'keywords' by redmine_tags
- The tags plugin is now enabled and the keywords have been migrated to tags.
I will also disable the keywords custo... - 03:20 PM task #6029 (Closed): trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
- The fix is now applied to the production system.
- 12:00 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
- Looks good.
I tested with http://130.133.70.38/redmine/projects/edit/issues?c%5B%5D=subject&c%5B%5D=priority&c%5B%... - 12:57 PM bug #5676: Sensu does not show up if no author exists for secundum reference
- This issue is ready for reviewing.
I created a dedicated test case which should cover all aspects: http://int.e-ta... - 12:05 PM Revision e29e2ebd (taxeditor): smaller changes for specimen import and others
- 11:58 AM Revision 761340e4 (cdm-dataportal): ref #5676 test for correct sensu representation of misapplied names
- 11:53 AM Revision 4bccf32d (taxeditor): minor changes in excel import wizard
- 11:44 AM Revision cd704234 (taxeditor): minor
- 11:39 AM Revision aeff6228 (taxeditor): delete transient services
10/13/2016
- 11:54 PM Revision 60dd84cb (cdmlib): fix #5952 Add identityCache
- 11:53 PM Revision d0353186 (cdmlib): cleanup
- 11:46 PM bug #6127 (Closed): NPE in NameCatalogue Controller on name_catalogue/taxon
- fixed
- 05:49 PM bug #6127: NPE in NameCatalogue Controller on name_catalogue/taxon
- For the review please click this:
http://test.e-taxonomy.eu/cdmserver/cichorieae/name_catalogue/taxon?classificat... - 05:46 PM bug #6127 (Resolved): NPE in NameCatalogue Controller on name_catalogue/taxon
- Applied in changeset cdmlib:commit:cdmlib|3fa85b454e525c42baf068b4f7cf9ecaad757fb1.
- 05:41 PM bug #6127 (Closed): NPE in NameCatalogue Controller on name_catalogue/taxon
http://api.cybertaxonomy.org:80/cichorieae/name_catalogue/taxon?classification=76b17487-3df4-41c7-8043-2bbb266eac...- 06:26 PM Revision 75f20bed (cdm-vaadin): ref #5458 Center detail window
- 06:26 PM Revision cb4029b0 (cdm-vaadin): ref #5458 Redesign navigation architecture
- - after login the user will be redirected directly to the table view
and the settings dialog will be opened
-made se... - 06:26 PM Revision 092fd728 (cdm-vaadin): ref #5458 Update selected distribution status after selection
- 06:26 PM Revision 3f6f86d5 (cdm-vaadin): ref #5458 Replace term dropdown with popup window for performance
- 06:26 PM Revision fda2cb06 (cdm-vaadin): ref #5458 Add toggle button for abbreviations to settings menu
- - extract constants for session attributes
- 06:26 PM Revision 70ea5d03 (cdm-vaadin): Trim Code + add serial version uid
- 05:46 PM Revision 3fa85b45 (cdmlib): fix #6127 handling case the taxon has no LSID, avoid NPE in NameCatalogeController
- 05:19 PM Revision 8ebd16d6 (cdm-dataportal): fixing selenium support for chrome browser
- 05:00 PM feature request #5952 (Resolved): Second cache field for specimen (identityCache)
- 04:58 PM feature request #5952: Second cache field for specimen (identityCache)
- 255 characters should be enough as it should be a short cache only holding most important identifiers
- 04:59 PM Revision 7e03e21e (cdmlib): fix #5952 Add fieldNumberCache
- 04:34 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
- Looks good. I tested it with the following query and could not find any differences between keywords and tags:
htt... - 04:24 PM feature request #5981 (Resolved): Add abbreviation to Rank "Cultivar"
- 04:23 PM Revision bcdf42bc (cdmlib): fix #5981 Add abbreviation to Rank "Cultivar"
- 04:09 PM Revision f6db28c4 (cdm-vaadin): cleanup
- 03:45 PM bug #3658 (Resolved): Update Nomenclatural code for datasources
- 03:44 PM feature request #5974 (In Progress): Remove synonym relationships
- 03:34 PM bug #4461 (Resolved): Ordering in datasources view fails
- 03:23 PM bug #5676 (Resolved): Sensu does not show up if no author exists for secundum reference
- Applied in changeset commit:cdm-dataportal|763b610cafda73d41d185ddb4e44f8baa701c0a2.
- 03:23 PM Revision 763b610c (cdm-dataportal): fix #5676 displaying the reference titleCache as sensu if authors are missind; also solving other problems
- 02:46 PM Revision 5d177a2e (taxeditor): minor
- 02:28 PM Revision eff603b4 (taxeditor): remove experimental code
- 01:42 PM Revision 030ad7c6 (cdmlib-apps): ref #5499 latest changes to Edaphobase import
- 01:41 PM Revision 3ef2e1bd (cdmlib-apps): ref #5974 Remove synonym relationships (not finished yet)
- 01:30 PM Revision a4947270 (cdmlib-apps): ref #3658 remove nomenclaturalCode
- 01:21 PM feature request #6126 (New): Make the label for nomenclatural status configurable
- add the possibility to configure whether the labels of the drop down menu are the title or the abbrev of the nomencla...
- 01:15 PM Revision fc545014 (taxeditor): minor
- 01:15 PM bug #5692 (Resolved): Delete a person within the bulk editor deletes the person even if not saved
- Applied in changeset taxeditor:commit:taxeditor|7dce04a4ef06e30769a711c8b6aceb11b2137c31.
- 01:07 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- I adapted the deletion to the merging and added the delete configurator to the lineAnnotation. Now the objects are an...
- 01:15 PM Revision 7dce04a4 (taxeditor): fix #5692: adapt delete algorithm to annotatedLineEditor mechanisms
- 01:14 PM Revision c0248cde (cdmlib): ref #3658 remove nomenclaturalCode from all datasource related classes
- * and rename NomenclaturalCodeAwareDataSource
- 12:17 PM task #5083: Alternative image viewer for dataportal
- The Universalviewer has now commonly accepted, even if there are concerns, but it is so far the best solution we have...
- 12:06 PM task #5083: Alternative image viewer for dataportal
- *Ralf Hand wrote:*
Hallo Andreas,
danke für den Link. Wir als sehr fotoorientiertes Projekt sind nicht uneinge... - 11:57 AM Revision 4b36c12a (cdmlib): ref #3658 Update nomenclatural code as CdmPreference (most probable value)
- 11:52 AM Revision 5dc46163 (cdmlib): cleanup
- 11:52 AM Revision cb96157e (cdmlib): ref #3658 Update nomenclatural code as CdmPreference (most probable value)
- 11:42 AM task #5943 (Closed): back to search button/link should go into a drupal block
- Enablement of the new block is done automatically when running the module update script, so no further action needs t...
- 11:16 AM task #5943 (Resolved): back to search button/link should go into a drupal block
- Applied in changeset commit:cdm-dataportal|beb914ef020af7daeaf97ce1f75d7bcb098dc9eb.
- 11:39 AM Revision d27e2b08 (cdm-dataportal): ref #5943 update script improvements
- 11:35 AM Revision fdb0f1fc (cdm-dataportal): ref #5943 update script improvements
- 11:16 AM Revision beb914ef (cdm-dataportal): fix #5943 back to search button/link moved to drupal block
- 11:09 AM Revision 152fcd76 (cdmlib): ref #5974 Replace synonym relationship update scripts (untested)
- 11:09 AM Revision 066c9dde (cdmlib): clean up and java doc
- 11:07 AM Revision 741a4c05 (cdmlib): #3547 remove not needed dataset.dtd from persistence
- 09:58 AM Revision fbeefcaf (cdmlib): ref #5974 Replace synonymRelationshipType by SynonymType and replace some other occurrences of synonym relationship
10/12/2016
- 09:00 PM Revision f476ff86 (cdmlib): ref #5974 Remove synonym relationship first compiling implementation in cdmlib
- 03:12 PM Revision 88505483 (taxeditor): removing p6spy dependencies
- 03:04 PM Revision 7b6ed357 (cdmlib): IDE launcher config cdmlib-remote-webapp-unit-test
- 03:02 PM Revision df435453 (cdmlib): relaxing web service access restrictions
- 01:35 PM Revision ac7fcb04 (taxeditor): minor
- 12:13 PM Revision 558d5bd1 (cdm-vaadin): ref #5458 extract constants for session attributes
- 12:05 PM Revision 5f031b4f (cdm-vaadin): ref #5458 Error handling for abbreviated labels
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