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From 09/28/2016 to 10/27/2016

10/26/2016

02:31 PM feature request #6166 (Closed): In ABCD import also import all siblings of a culture or tissue sample
actually we only get the associated units of an unit, but for a derivate of a culture or a tissue sample we also want... Katja Luther
10:20 AM bug #6165 (Rejected): distributionInfoFor service no longer respects the statsusColors parameter
The below request includes the statusColors parameter:
http://api.cybertaxonomy.org/cyprus/portal/description/dist...
Andreas Kohlbecker

10/25/2016

04:55 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm instances
Andreas Müller wrote:
> I guess this is was done long time. Can you please check.
The taxon navigator still uses ...
Patrick Plitzner
02:54 PM task #6005 (Rejected): Create subprojects of EDIT platform components
We have discussed the idea of using subprojects for the EDIT platform components and have decided against this.
Clos...
Andreas Kohlbecker
12:09 PM bug #6164 (Worksforme): cyprus: invalid data causing crash in modifier editor
Adding a new Modifier vocabulary to the cyprus database causes an exception on save (stack trace below).
This is p...
Andreas Kohlbecker
10:43 AM bug #6163: can't add media to observation/specimen anymore
As a first step, I activated the possibility to add media to occurence data in the bulk editor. Katja Luther
10:08 AM bug #6163 (New): can't add media to observation/specimen anymore
Use case: entering an observation with image
Problems: can't choose "Observation" when using the new Specimen Expl...
Gabriele Dröge
10:05 AM feature request #6162 (New): Implement "Forgot your password?" button in the Taxeditor connect dialog
This is a successor of #6161 Andreas Kohlbecker
09:58 AM feature request #6161 (Closed): Service and webservice to recover forgotten passwords
The password recovery function allows users to request for a password recovery link which is send to the user via ema... Andreas Kohlbecker

10/24/2016

05:30 PM bug #6088: New reproducable multiple representations exception for name relationships
I found another way to reproduce this:

1. Open taxon in name editor
1. Add a new name relation (do NOT save)
...
Patrick Plitzner
05:00 PM feature request #1362 (Rejected): Version number should be located at one place
The version number of the TaxEditor is located at one place (except the version number in plugin.xml of each plugin) ... Patrick Plitzner
02:30 PM bug #5693 (Closed): Deleting a synonym only deletes the synonym relation
This is solved with commit:08a698afd5a98944fb4558599fc04dc24282a51a Katja Luther
02:14 PM feature request #5972 (In Progress): Prevent user from unwanted author and reference updates
@AM Please have a look whether the message is ok or if it should be bigger or other text... Katja Luther
01:47 PM feature request #3573 (Resolved): Improve EDITOR import UI configuration panel
Applied in changeset commit:taxeditor|3c066c3d21e5c32b5afd0dc5f673ea91fa07c3b4. Patrick Plitzner
01:29 PM bug #6160 (Rejected): Add preservation method and stage as sub class to DefinedTerm
We need this in order to filter correctly when displaying all available terms Patrick Plitzner
01:07 PM bug #6159: improve distribution editor in TaxEditor
improve the selection of distribution areas in preferences and fix some smaller issues in the distribution editor its... Katja Luther
11:15 AM bug #6159 (Closed): improve distribution editor in TaxEditor
Improving the distribution editor and selection of areas used in distribution editor
we should handle the saving s...
Katja Luther
10:31 AM bug #5967: Adapt default update site to production update site.
I vote for not adding a new issue. I think the standard user only runs one instance which usually is the stable relea... Patrick Plitzner
10:20 AM task #6158 (Closed): Update EDIT documentation from svn to git
the documentation stills refers to the old svn repositories. We should change this to git and also link to git develo... Patrick Plitzner

10/21/2016

04:02 PM bug #6157 (New): Consider implementing quick setup button "Quick Singlepage Configuration'"
More an more portal are configured with tabless taxonpages. A specific setup is required for this to look pleasant
...
Andreas Kohlbecker
03:37 PM bug #6152 (Closed): Classification incomplete in WoRMS taxa
completed Andreas Kohlbecker
01:34 PM bug #6152 (Closed): Classification incomplete in WoRMS taxa
*NOTE: This issue has been imported from bitbucket (issue 14). All timestamps have been reset during the import.*
...
Andreas Kohlbecker
03:15 PM feature request #6156 (Closed): implement service to resolve the taxonomic parents of a taxon
Andreas Kohlbecker
03:12 PM feature request #6156 (Closed): implement service to resolve the taxonomic parents of a taxon
Andreas Kohlbecker
03:02 PM feature request #6145 (Closed): provide data on direct taxonomic children of a taxa
This has been implemented by introducing the `/classification/{taxonId}/children` webservice. Andreas Kohlbecker
01:17 PM feature request #6145 (Closed): provide data on direct taxonomic children of a taxa
*NOTE: This issue has been imported from bitbucket (issue 7). All timestamps have been reset during the import.*
...
Andreas Kohlbecker
02:40 PM bug #6151: implement pager for search service
For the time until the pager is really implemented I worked on the interim solution by relaxing the max hit setting f... Andreas Kohlbecker
01:30 PM bug #6151 (In Progress): implement pager for search service

To save time I decided to change the strategy. I will not implement a general pager mechanism into utis. Not all ...
Andreas Kohlbecker
01:29 PM bug #6151 (Closed): implement pager for search service
UTIS is not retuning all possible results from the connected providers.
A pager for search service should be imple...
Andreas Kohlbecker
01:43 PM feature request #6155 (Closed): hide the empty higherClassification property from the taxon object serialization
implemented and tested Andreas Kohlbecker
01:42 PM feature request #6155 (Closed): hide the empty higherClassification property from the taxon object serialization
*NOTE: This issue has been imported from bitbucket (issue 17). All timestamps have been reset during the import.*
...
Andreas Kohlbecker
01:41 PM feature request #6154 (Closed): optional inclusion of the parentTaxon into the search responses
implemented and tested Andreas Kohlbecker
01:38 PM feature request #6154 (Closed): optional inclusion of the parentTaxon into the search responses
*NOTE: This issue has been imported from bitbucket (issue 16). All timestamps have been reset during the import.*
...
Andreas Kohlbecker
01:36 PM bug #6153 (Closed): NPE during classification/{uuid}/parent request

fixed by commit commit:utis-core|d7a90b5
Andreas Kohlbecker
01:35 PM bug #6153 (Closed): NPE during classification/{uuid}/parent request
http://cybertaxonomy.eu:80/eu-bon/utis/1.2/classification/0EB6CA37-3365-4AF5-A800-8FC4B8C366FA/parent?providers=pesi&... Andreas Kohlbecker
01:28 PM bug #6150 (Closed): missing and wrongly maped data in EEA_BDC_Client resonses
*originally closed on 2015-11-06*
DONE!
Andreas Kohlbecker
01:28 PM bug #6150 (Closed): missing and wrongly maped data in EEA_BDC_Client resonses
*NOTE: This issue has been imported from bitbucket (issue 12). All timestamps have been reset during the import.*
...
Andreas Kohlbecker
01:27 PM feature request #6149 (Closed): EUNIS: periodically update local EEA data
*originally closed on 2015-10-29*
implemented
Andreas Kohlbecker
01:26 PM feature request #6149 (Closed): EUNIS: periodically update local EEA data
*NOTE: This issue has been imported from bitbucket (issue 11). All timestamps have been reset during the import.*
...
Andreas Kohlbecker
01:25 PM feature request #6148 (Closed): generate java client api based on swagger data
*originally closed on 2015-11-06*
the client is available at http://dev.e-taxonomy.eu/gitweb/utis-client.git
Andreas Kohlbecker
01:24 PM feature request #6148 (Closed): generate java client api based on swagger data
*NOTE: This issue has been imported from bitbucket (issue 10). All timestamps have been reset during the import.*
...
Andreas Kohlbecker
01:23 PM feature request #6147 (Closed): EUNIS: use offline rdf as suggested by EEA
*originally closed on 2015-10-29*
this is fixed
Andreas Kohlbecker
01:22 PM feature request #6147 (Closed): EUNIS: use offline rdf as suggested by EEA
*NOTE: This issue has been imported from bitbucket (issue 9). All timestamps have been reset during the import.*
-...
Andreas Kohlbecker
01:21 PM bug #6146 (New): The checklist details of the Response object are missing in xml responses
*NOTE: This issue has been imported from bitbucket (issue 8). All timestamps have been reset during the import.*
-...
Andreas Kohlbecker
01:15 PM feature request #6144 (Closed): the classsification object is not reflecting all possible ranks
*originally closed on 2015-11-06*
this is fixed, the taxon object now has a list of 'higherClassificationInfo' o...
Andreas Kohlbecker
01:09 PM feature request #6144 (Closed): the classsification object is not reflecting all possible ranks
*NOTE: This issue has been imported from bitbucket (issue 6). All timestamps have been reset during the import.*
-...
Andreas Kohlbecker
12:26 PM feature request #6143 (Closed): Classification.clazz should be serialized as class
*originally closed on 2015-01-19*
done!
Andreas Kohlbecker
12:25 PM feature request #6143: Classification.clazz should be serialized as class
Using a mixin has been tested
* ClassificationMixIn.class :
* SpringMVCConfig.getJsonViewResolver()
~~~ java...
Andreas Kohlbecker
12:24 PM feature request #6143 (Closed): Classification.clazz should be serialized as class
*NOTE: This issue has been imported from bitbucket (issue 5). All timestamps have been reset during the import.*
-...
Andreas Kohlbecker
12:22 PM feature request #6142 (Closed): vernacular name search
Andreas Kohlbecker
12:20 PM feature request #6142: vernacular name search
*originally closed on 2015-01-19*
implemented
Andreas Kohlbecker
12:20 PM feature request #6142 (Closed): vernacular name search
*NOTE: This issue has been imported from bitbucket (issue 4). All timestamps have been reset during the import.*
-...
Andreas Kohlbecker
12:18 PM feature request #6141 (Closed): search with wildcard (like search) possible
*originally closed on 2015-01-19*
implemented
Andreas Kohlbecker
12:18 PM feature request #6141 (Closed): search with wildcard (like search) possible
NOTE: This issue has been imported from bitbucket (issue 3). All timestamps have been reset during the import.
---...
Andreas Kohlbecker
12:17 PM feature request #6140 (Closed): Create Terms of Service page and link it
originally closed on 2015-01-19 Andreas Kohlbecker
12:16 PM feature request #6140 (Closed): Create Terms of Service page and link it
NOTE: This issue has been imported from bitbucket (issue 2). All timestamps have been reset during the import.
----
Andreas Kohlbecker
12:15 PM bug #6139 (Closed): NPE in UtisController.search()
*originally closed on 2015-01-19* Andreas Kohlbecker
12:14 PM bug #6139 (Closed): NPE in UtisController.search()
*NOTE: This issue has been imported from bitbucket. All timestamps have been reset during the import.*
----
The...
Andreas Kohlbecker
11:48 AM feature request #5616: Add the"Open in..." menu to taxon search
Katja Luther wrote:
> The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when ...
Andreas Müller
10:09 AM feature request #5616: Add the"Open in..." menu to taxon search
The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when it is not used in a cla... Katja Luther
10:13 AM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog
please have a look, if everything works as expected now. Katja Luther

10/20/2016

05:10 PM feature request #6058 (Resolved): Store NamedArea dialog filters more individually
Patrick Plitzner
03:59 PM feature request #5616: Add the"Open in..." menu to taxon search
Andreas Müller wrote:
> The first issue seems to be fixed.
>
> Handling of orphaned taxa still does not work (nei...
Patrick Plitzner
03:45 PM bug #6101 (Closed): NPE when having multiple lanugage support disabled
Patrick Plitzner
01:59 PM bug #6138 (Closed): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
this test fails with
~~~ text
Caused by: org.h2.jdbc.JdbcSQLException: Eindeutiger Index oder Primärschlüssel ve...
Katja Luther
01:55 PM feature request #6050 (New): provide the possibility to choose the fields of the simple details view for names
the configuration is implemented now, please have a look, if it is ok or if more fields should be configurable. Katja Luther
01:55 PM feature request #6050 (Resolved): provide the possibility to choose the fields of the simple details view for names
Applied in changeset commit:taxeditor|76b874f88b5e44d9cf572760d39fecad6a99cdf7. Katja Luther

10/19/2016

09:50 PM task #6137 (In Progress): Urgent imports
PESI
MCL (#10048)
Uzbekistan #8996 (taxa), #9041 (altitudes), #9049 (habitats), #9125 (descriptions), #9126 (ph...
Andreas Müller
08:44 PM bug #6136 (New): Implement type providing name in homotypical group
For discussion see #6041.
Still need to decide if this is really the best solution.
Ask Greuther.
Is there alwa...
Andreas Müller
07:14 PM task #6135 (Closed): Remove authors from Taxonomische Großgruppe
... or make it configurable
Taxonomische Großgruppe
* Autorenschaft soll da nicht angezeigt werden
Was meint...
Andreas Müller
07:13 PM feature request #6134 (Closed): Allow grouping by Taxonomische Großgruppe
- Ja, wir brauchen auch eine Gruppierung nach den Taxonomischen Gruppen wie von dir beschrieben.
OK, versuche ich e...
Andreas Müller
07:03 PM feature request #6133: Improve Rank Webservice
/termVocabulary/ef0d1ce1-26e3-4e83-b47b-ca74eed40b1b/terms.json?orderBy=BY_ORDER_INDEX_ASC
- Ich dachte, die Ränge ...
Andreas Müller
07:02 PM feature request #6133 (Closed): Improve Rank Webservice
* ~~Filter ranks by those used in Edaphobase~~
* ~~Or if use findByMarker add sortindex/order ranks by sortindex~~...
Andreas Müller
06:48 PM feature request #6128: Include authorship in taxon search web service
SL: Bis jetzt haben wir einfach angenommen, dass alles, was angezeigt wird, auch durchsuchbar ist. Wir brauchen diese... Andreas Müller

10/18/2016

06:40 PM bug #6129 (Resolved): After creating a new Reference in selection dialog, it could not be found in the selection dialog
Applied in changeset commit:taxeditor|5a8a1f1453f51d9a99421a6d137f707c266a08b7. Katja Luther
06:40 PM feature request #5891 (Resolved): Taxon appended phrase should not allow empty string
Applied in changeset commit:taxeditor|ceaa3fed461d7c19d3fc124917b4bbfeb35d3f36. Katja Luther
06:36 PM feature request #5634: Excluded note for excluded taxa /taxon nodes
Applied in changeset commit:cdmlib|1e55f5c2544860c52cea161e4edcff5ef2e1bbfa. Andreas Müller
05:45 PM feature request #5634 (Resolved): Excluded note for excluded taxa /taxon nodes
Andreas Müller
06:36 PM feature request #5974 (Resolved): Remove synonym relationships
Applied in changeset commit:cdmlib|d7fa3e131995dd5543514aa3afd71fdd31b59bf5. Andreas Müller
06:36 PM feature request #5952: Second cache field for specimen (identityCache)
Applied in changeset commit:cdmlib|7e03e21e1ae317b2fc610adf44deabb82083a083. Andreas Müller
10:28 AM bug #6099: Duration of save is increasing
to reduce the saving time we removed the cascading to the child taxa.
please test the editor, if everything works as...
Katja Luther
09:20 AM bug #6120 (Closed): Cleanup uuidAndTitleCache methods
tested all selection dialogs where it is used and it seems to work. Katja Luther

10/17/2016

06:18 PM bug #6131 (Closed): Vaadin DistributionEditor TODOS
- ~~ok/cancel button in settings window -> same min width~~
- ~~if only 1 classification -> autoselect~~
- ~~NPE wh...
Patrick Plitzner
05:32 PM bug #6130: Areafilter widget broken
Typing in the text field is no longer filtering the selection of areas Andreas Kohlbecker
05:30 PM bug #6130 (Closed): Areafilter widget broken
This is a regression which might have been introduced while solving #6087 Andreas Kohlbecker
01:13 PM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog
This is because the search pattern is created out of the abbrevTitleCache concatinated with the authorstring.
Removi...
Katja Luther
01:10 PM bug #6129 (Closed): After creating a new Reference in selection dialog, it could not be found in the selection dialog
mail von Norbert:
ich möchte sicherheitshalber nochmal an meine Bugmeldung vom 28.7.16 erinnern, welche vielleicht...
Katja Luther

10/16/2016

09:30 PM feature request #6128 (Closed): Include authorship in taxon search web service
/portal/taxon/find?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&doTaxa=1&pageNumber=0&pageSize=10&query={qu... Andreas Müller

10/14/2016

04:35 PM feature request #3363 (In Progress): dagger (Totenkreuz) after extinct and fossil taxa
Andreas Müller
04:26 PM feature request #3925 (Resolved): Unplaced and excluded to TaxonNode
Andreas Müller
04:12 PM task #6028 (Closed): Post-migration (trac->redmine) fixes
The obsolete custom fields have all been disabled and can be deleted. Andreas Kohlbecker
03:46 PM task #6020 (Closed): Consider replacing custom field 'keywords' by redmine_tags
The tags plugin is now enabled and the keywords have been migrated to tags.
I will also disable the keywords custo...
Andreas Kohlbecker
03:20 PM task #6029 (Closed): trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
The fix is now applied to the production system. Andreas Kohlbecker
12:00 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
Looks good.
I tested with http://130.133.70.38/redmine/projects/edit/issues?c%5B%5D=subject&c%5B%5D=priority&c%5B%...
Andreas Müller
12:57 PM bug #5676: Sensu does not show up if no author exists for secundum reference
This issue is ready for reviewing.
I created a dedicated test case which should cover all aspects: http://int.e-ta...
Andreas Kohlbecker

10/13/2016

11:46 PM bug #6127 (Closed): NPE in NameCatalogue Controller on name_catalogue/taxon
fixed Andreas Müller
05:49 PM bug #6127: NPE in NameCatalogue Controller on name_catalogue/taxon
For the review please click this:
http://test.e-taxonomy.eu/cdmserver/cichorieae/name_catalogue/taxon?classificat...
Andreas Kohlbecker
05:46 PM bug #6127 (Resolved): NPE in NameCatalogue Controller on name_catalogue/taxon
Applied in changeset cdmlib:commit:cdmlib|3fa85b454e525c42baf068b4f7cf9ecaad757fb1. Andreas Kohlbecker
05:41 PM bug #6127 (Closed): NPE in NameCatalogue Controller on name_catalogue/taxon

http://api.cybertaxonomy.org:80/cichorieae/name_catalogue/taxon?classification=76b17487-3df4-41c7-8043-2bbb266eac...
Andreas Kohlbecker
05:00 PM feature request #5952 (Resolved): Second cache field for specimen (identityCache)
Andreas Müller
04:58 PM feature request #5952: Second cache field for specimen (identityCache)
255 characters should be enough as it should be a short cache only holding most important identifiers Andreas Müller
04:34 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
Looks good. I tested it with the following query and could not find any differences between keywords and tags:
htt...
Andreas Müller
04:24 PM feature request #5981 (Resolved): Add abbreviation to Rank "Cultivar"
Andreas Müller
03:45 PM bug #3658 (Resolved): Update Nomenclatural code for datasources
Andreas Müller
03:44 PM feature request #5974 (In Progress): Remove synonym relationships
Andreas Müller
03:34 PM bug #4461 (Resolved): Ordering in datasources view fails
Andreas Müller
03:23 PM bug #5676 (Resolved): Sensu does not show up if no author exists for secundum reference
Applied in changeset commit:cdm-dataportal|763b610cafda73d41d185ddb4e44f8baa701c0a2. Andreas Kohlbecker
01:21 PM feature request #6126 (New): Make the label for nomenclatural status configurable
add the possibility to configure whether the labels of the drop down menu are the title or the abbrev of the nomencla... Katja Luther
01:15 PM bug #5692 (Resolved): Delete a person within the bulk editor deletes the person even if not saved
Applied in changeset taxeditor:commit:taxeditor|7dce04a4ef06e30769a711c8b6aceb11b2137c31. Katja Luther
01:07 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
I adapted the deletion to the merging and added the delete configurator to the lineAnnotation. Now the objects are an... Katja Luther
12:17 PM task #5083: Alternative image viewer for dataportal
The Universalviewer has now commonly accepted, even if there are concerns, but it is so far the best solution we have... Andreas Kohlbecker
12:06 PM task #5083: Alternative image viewer for dataportal
*Ralf Hand wrote:*
Hallo Andreas,

danke für den Link. Wir als sehr fotoorientiertes Projekt sind nicht uneinge...
Andreas Kohlbecker
11:42 AM task #5943 (Closed): back to search button/link should go into a drupal block
Enablement of the new block is done automatically when running the module update script, so no further action needs t... Andreas Kohlbecker
11:16 AM task #5943 (Resolved): back to search button/link should go into a drupal block
Applied in changeset commit:cdm-dataportal|beb914ef020af7daeaf97ce1f75d7bcb098dc9eb. Andreas Kohlbecker

10/11/2016

06:09 PM task #6125 (New): Implement tests for OAuth2 in cdmlib-remote
The tests in spring-projects/spring-security-oauth samples/oauth2/sparklr project are a good start! Andreas Kohlbecker
03:35 PM bug #5948 (Resolved): supress protologue icon if according media uri is missing
Applied in changeset cdm-dataportal:commit:cdm-dataportal|275b2642c2438013cb1ac06bb986dceb388592d7. Andreas Kohlbecker
01:36 PM bug #5948 (In Progress): supress protologue icon if according media uri is missing
Andreas Kohlbecker
01:36 PM bug #5948 (Rejected): supress protologue icon if according media uri is missing
Andreas Kohlbecker
02:22 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Whatever solution we choose please cover it with an according test. Andreas Müller
02:19 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> Katja Luther wrote:
> I don't want to change the readonly=false, but maybe it is possible to ...
Andreas Müller
12:22 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > The problem seems to be that we have to ...
Katja Luther
11:58 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Andreas Müller wrote:
> Katja Luther wrote:
> > The problem seems to be that we have to use the @transactional(read...
Katja Luther
11:43 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> The problem seems to be that we have to use the @transactional(readonly=false) and this means ...
Andreas Müller
11:30 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
The problem seems to be that we have to use the @transactional(readonly=false) and this means that the commit is call... Katja Luther
01:25 PM feature request #6110: Use https for map service calls when the portal is access via https
This needs to be tested at the edit-test server. The following requirements need to be fulfilled for testing:
* po...
Andreas Kohlbecker
01:22 PM feature request #6110 (Resolved): Use https for map service calls when the portal is access via https
Applied in changeset commit:cdm-dataportal|7aeb752750a73e9a99fa20b4c3e932aae49a2a94. Andreas Kohlbecker
10:04 AM task #6118: evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
updating development test script to latest implementation Andreas Kohlbecker

10/10/2016

10:39 PM task #6118: evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
Adding shell script to test different authentication modes. Andreas Kohlbecker

10/09/2016

04:16 PM bug #6119 (Resolved): Implement uuidAndTitleCache remote services
Andreas Müller
04:13 PM bug #6119 (In Progress): Implement uuidAndTitleCache remote services
Andreas Müller

10/07/2016

07:10 PM task #3547 (In Progress): Remove size of test data where possible
Andreas Müller
03:35 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
This is the same for taxa and names. Katja Luther
03:27 PM bug #3658 (In Progress): Update Nomenclatural code for datasources
Andreas Müller
03:08 PM bug #5888: Deleting factual data does not work (dirty flag not set)
the description needs to be passed to the postExecute method, this triggers the dirty flag. Katja Luther
03:04 PM bug #5888 (Resolved): Deleting factual data does not work (dirty flag not set)
Applied in changeset taxeditor:commit:taxeditor|a3e69a37383c07c575a7592c1093f68dcc6e830a. Katja Luther
12:27 PM bug #5832: It is not possible to search for hybrids in taxon search
This is because hybrids do not have a namecache and the search works on the nameCache. Katja Luther
11:22 AM task #6089 (Resolved): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Applied in changeset cdmlib:commit:cdmlib|30451d3cd027497576ee106c435c62d4b5021e9a. Andreas Müller
11:13 AM bug #6120: Cleanup uuidAndTitleCache methods
Applied in changeset cdmlib:commit:cdmlib|c6af6a3d58f8fa0ec2a803f8651b8acd04139fde. Andreas Müller
11:13 AM bug #6072: Implement getTaxonomicGroups for Edaphobase
Applied in changeset cdmlib:commit:cdmlib|1e8a54ffa558ce07fa340c307d6ec447a8f66d40. Andreas Müller

10/06/2016

03:23 PM bug #6121: NPE during portal web service requests that go through BaseController.doGetMethod()
Be aware that the edaphobase uuids are not yet stable Andreas Müller
01:21 PM bug #6121 (Worksforme): NPE during portal web service requests that go through BaseController.doGetMethod()

For example:
http://api.cybertaxonomy.org/edaphobase/portal/taxon/a032b2bc-84dd-44d5-a149-57a3e23da605/sec.json
...
Andreas Kohlbecker
02:24 PM bug #6122 (Resolved): add titleCache service
Applied in changeset commit:cdmlib|3dfc49ed20bbef8f573798864ced75424f892470. Andreas Müller
02:21 PM bug #6122 (Closed): add titleCache service
We need a service that returns only the titleCache for a given uuid.
By default it returns the titleCache as store...
Andreas Müller
01:00 PM bug #6120: Cleanup uuidAndTitleCache methods
Andreas Müller wrote:
> Please also check the code if you think it is reasonable
In TaxonBaseSelectionDialog it n...
Katja Luther
12:50 PM bug #6120: Cleanup uuidAndTitleCache methods
Please also check the code if you think it is reasonable Andreas Müller
12:37 PM bug #6120 (Resolved): Cleanup uuidAndTitleCache methods
Applied in changeset cdmlib:commit:cdmlib|8d6c8a12abe82836eae03eab6a43b3cdea6d26df. Andreas Müller
12:35 PM bug #6120 (Closed): Cleanup uuidAndTitleCache methods
In TaxonService we have 2 methods getUuidAndTitleCacheTaxon and getUuidAndTitleCacheSynonym. They could be merged int... Andreas Müller
11:51 AM bug #6119 (Closed): Implement uuidAndTitleCache remote services
Andreas Müller

10/05/2016

02:27 PM bug #5854 (Worksforme): Deleting terms has no effect
the deletion already works and the lists of terms are refereshed correctly. Katja Luther
02:17 PM bug #6056 (Closed): Checklist Editor does not close session
Katja Luther
01:18 PM task #6118 (In Progress): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
Andreas Kohlbecker
01:18 PM task #6118 (Closed): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
[spring-security-oauth](http://projects.spring.io/spring-security-oauth) & [Spring-Cloud-Security](http://cloud.sprin... Andreas Kohlbecker
12:54 PM task #2055: Improve Article creation for nomenclatural references
needs time for discussion and consistency check with Berlin Model situation (see duplicating ticket) Andreas Müller
12:40 PM bug #5211 (Worksforme): Error when creating new taxon /problem with sortindex in taxon tree
Probably fixed with better handling for null values in merge. Andreas Müller
12:19 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Or even better solution, use DTOs on server side. Andreas Müller
12:11 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Maybe the problem is the label provider which initializes lazy objects. Which thread does it use? Andreas Müller
11:38 AM bug #5965 (In Progress): Check if authentication works correctly after datasource change
Andreas Müller
11:28 AM feature request #5972: Prevent user from unwanted author and reference updates
Decision: for id > 0 implement check for further references and inform the user in red about these references if they... Andreas Müller

10/04/2016

12:55 PM bug #6115: protect cdm content by drupal permission
Hi Andreas,
the review of this ticket need intensive testing. I suggest we use one of the published portals on the...
Andreas Kohlbecker
12:45 PM bug #6115 (Resolved): protect cdm content by drupal permission
Applied in changeset cdm-dataportal:commit:cdm-dataportal|c6fe437bfe330b2aa1cc96d32d956edfc14f8b19. Andreas Kohlbecker
12:50 PM bug #6062 (Closed): NPE in RefencingObjects for TaxonNameDescription
Though #5616 is not yet fully fixed I think we can close this ticket now. Andreas Müller
12:45 PM feature request #5616: Add the"Open in..." menu to taxon search
The first issue seems to be fixed.
Handling of orphaned taxa still does not work (neither the icon nor the right c...
Andreas Müller
12:21 PM feature request #5969: Implement CdmPreference reading for database preferences
I added a remark that that the preference is stored in db and a check whether the editor is already connected to a da... Katja Luther
11:28 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences
Katja Luther wrote:
> In Revision 4625a011 a check for the existence of the preference in DB is added.
This does ...
Andreas Müller
11:53 AM bug #5967 (Feedback): Adapt default update site to production update site.
If no entry exists in eu.etaxonomy.taxeditor.store.prefs everything works as expected as far as I can see. Meaning, t... Andreas Müller
11:17 AM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget
Seems to work well. Related issue about layout of filter in new ticket: #6116 Andreas Müller
11:12 AM bug #6116 (New): Advanced Search area filter layout needs to be improved
The new resizable version of the area filter looks much better already.
But 2 issues need to be solved.
1) If >...
Andreas Müller

09/29/2016

06:40 PM bug #6115 (Closed): protect cdm content by drupal permission
A couple of portals are currently in maintenance mode because the taxa and names must not be disclosed to the public.... Andreas Kohlbecker
06:09 PM bug #6114 (Resolved): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
Applied in changeset cdm-dataportal:commit:cdm-dataportal|7a751db42d606dc2662560f6a7e19bab6896fe8b. Andreas Kohlbecker
05:24 PM bug #6114 (Closed): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
For details see #4379
This currently affects the FaunaEuropaea project!
Andreas Kohlbecker
04:30 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Conclusion of the discussion:
* The current functionality can not simply be relabeled
* The current functionality...
Andreas Müller
02:07 PM bug #2957: running maven site:site for Taxonomic Editor fails
This is broken since **4 Years**. Who can take care for this ticket? Andreas Kohlbecker
11:01 AM feature request #6113 (Closed): webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML

KML 2.2 : https://portal.ogc.org/files/?artifact_id=27810
potentially helpful libraries:
* https://github.com...
Andreas Kohlbecker
10:57 AM bug #3226: openlayers map google baselayers: api keys rejected
this is easy to fix Andreas Kohlbecker
 

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