Activity
From 09/27/2016 to 10/26/2016
10/26/2016
- 05:31 PM Revision ba1551d6 (taxeditor): Merge branch 'LibrAlign' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into LibrAlign
- 05:31 PM Revision c80496ea (taxeditor): Merge branch 'LibrAlign' of https://dev.e-taxonomy.eu/git/taxeditor into LibrAlign
- # Conflicts:
# eu.etaxonomy.taxeditor.molecular.lib/.classpath
# eu.etaxonomy.taxeditor/rcp.target - 04:08 PM Revision 8f1d102f (cdm-vaadin): ref #5458 Fix class cast exception
- 04:02 PM Revision 44123d65 (cdm-vaadin): ref #5458 Sort named areas
- 03:54 PM Revision f957f84d (taxeditor): change herbarium to collection
- 03:23 PM Revision f8b0de79 (cdm-vaadin): ref #5458 Fix item initialization problems
- 02:56 PM Revision fe7f0131 (cdm-vaadin): ref #5458 Use service based on UuidAndTitleCache to build taxon tree
- 02:31 PM feature request #6166 (Closed): In ABCD import also import all siblings of a culture or tissue sample
- actually we only get the associated units of an unit, but for a derivate of a culture or a tissue sample we also want...
- 11:09 AM Revision 100e37d9 (cdmlib): ref #2380 Implement service for getting parent of
- UuidAndTitleCache<TaxonNode>
- parent of either ITaxonTree or UuidAndTitleCache<TaxonNode>
can be retrieved
- adde... - 10:20 AM bug #6165 (Rejected): distributionInfoFor service no longer respects the statsusColors parameter
- The below request includes the statusColors parameter:
http://api.cybertaxonomy.org/cyprus/portal/description/dist... - 10:05 AM Revision 0f1f1072 (taxeditor): Merge branch 'develop' into LibrAlign
- 10:04 AM Revision 63892e70 (taxeditor): Add spring oauth2 dependency
10/25/2016
- 04:55 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm instances
- Andreas Müller wrote:
> I guess this is was done long time. Can you please check.
The taxon navigator still uses ... - 04:52 PM Revision 321a37d1 (cdmlib): ref #2380 Implement service for getting children of
- UuidAndTitleCache<TaxonNode>
- direct children of either ITaxonTree or UuidAndTitleCache<TaxonNode>
can be retrieve... - 02:54 PM task #6005 (Rejected): Create subprojects of EDIT platform components
- We have discussed the idea of using subprojects for the EDIT platform components and have decided against this.
Clos... - 12:09 PM bug #6164 (Worksforme): cyprus: invalid data causing crash in modifier editor
- Adding a new Modifier vocabulary to the cyprus database causes an exception on save (stack trace below).
This is p... - 10:43 AM bug #6163: can't add media to observation/specimen anymore
- As a first step, I activated the possibility to add media to occurence data in the bulk editor.
- 10:08 AM bug #6163 (New): can't add media to observation/specimen anymore
- Use case: entering an observation with image
Problems: can't choose "Observation" when using the new Specimen Expl... - 10:42 AM Revision b04853ae (taxeditor): ref #6163: in occurence bulk editor it is possible to add media
- 10:05 AM feature request #6162 (New): Implement "Forgot your password?" button in the Taxeditor connect dialog
- This is a successor of #6161
- 09:58 AM feature request #6161 (Closed): Service and webservice to recover forgotten passwords
- The password recovery function allows users to request for a password recovery link which is send to the user via ema...
10/24/2016
- 05:30 PM bug #6088: New reproducable multiple representations exception for name relationships
- I found another way to reproduce this:
1. Open taxon in name editor
1. Add a new name relation (do NOT save)
... - 05:00 PM feature request #1362 (Rejected): Version number should be located at one place
- The version number of the TaxEditor is located at one place (except the version number in plugin.xml of each plugin) ...
- 02:30 PM bug #5693 (Closed): Deleting a synonym only deletes the synonym relation
- This is solved with commit:08a698afd5a98944fb4558599fc04dc24282a51a
- 02:14 PM feature request #5972 (In Progress): Prevent user from unwanted author and reference updates
- @AM Please have a look whether the message is ok or if it should be bigger or other text...
- 02:11 PM Revision 84269784 (taxeditor): ref #5972: the wizard warns the user if the reference is used ssomewhere else
- 01:47 PM feature request #3573 (Resolved): Improve EDITOR import UI configuration panel
- Applied in changeset commit:taxeditor|3c066c3d21e5c32b5afd0dc5f673ea91fa07c3b4.
- 01:47 PM Revision 3c066c3d (taxeditor): fix #3573 Add non-generic configurator page to ABCD import wizard
- 01:36 PM Revision c0c46413 (taxeditor): #ref #5496 Do not show any terms for preservation method and stage
- preferences
- 01:29 PM bug #6160 (Rejected): Add preservation method and stage as sub class to DefinedTerm
- We need this in order to filter correctly when displaying all available terms
- 01:07 PM bug #6159: improve distribution editor in TaxEditor
- improve the selection of distribution areas in preferences and fix some smaller issues in the distribution editor its...
- 11:15 AM bug #6159 (Closed): improve distribution editor in TaxEditor
- Improving the distribution editor and selection of areas used in distribution editor
we should handle the saving s... - 01:05 PM Revision e45ed4d5 (taxeditor): ref #6159: minor
- 01:05 PM Revision 8407c42c (taxeditor): ref #6159: fix that some column show no data
- 01:02 PM Revision 91cdf81a (cdmlib): fix #4453 Enhance portal visualization of molecular data
- - used DefinedTerm constants for UUIDS
- used titleCache for all DerivedUnits
- move string representations to po... - 01:02 PM Revision 2c23b054 (cdm-dataportal): fix #4453 Enhance portal visualization of molecular data
- - used DefinedTerm constants for UUIDS
- used titleCache for all DerivedUnits
- move string representations to po... - 01:01 PM Revision 876be37d (cdmlib): add test for ermIdInVocabularyComparator
- 12:54 PM Revision e111542f (cdmlib): fix TermIdInVocabularyComparator
- 12:35 PM Revision 102e44cd (taxeditor): Fix potential NPE
- 10:33 AM Revision 0de43613 (cdmlib): move taxonnode needs to save old parent and child node
- 10:31 AM bug #5967: Adapt default update site to production update site.
- I vote for not adding a new issue. I think the standard user only runs one instance which usually is the stable relea...
- 10:20 AM task #6158 (Closed): Update EDIT documentation from svn to git
- the documentation stills refers to the old svn repositories. We should change this to git and also link to git develo...
- 09:27 AM Revision c6476daa (taxeditor): Merge branch 'develop' into LibrAlign
- # Conflicts:
# eu.etaxonomy.taxeditor.molecular.lib/.classpath
10/22/2016
- 02:36 PM Revision c37c8506 (taxeditor): Plugin molecular.lib refactored to use direct project dependencies. This should not be merged into trunk, since this is only for development state. (Currently the trunk is anyway already using different Maven dependencies.)
- Adjustments to recent changes in JPhyloIO.
10/21/2016
- 05:48 PM Revision 9278d6a7 (cdm-dataportal): solving autoscroll problems in taxon tree
- 04:45 PM Revision 6de6d849 (cdmlib): Improve taxon delete test
- 04:45 PM Revision 15566c6f (cdmlib): ref #5974 implement substitute method for TaxonService.getAllRelationships
- 04:41 PM Revision fd469b65 (cdmlib): update path to dataset.xsd in persistence test data
- 04:02 PM bug #6157 (New): Consider implementing quick setup button "Quick Singlepage Configuration'"
- More an more portal are configured with tabless taxonpages. A specific setup is required for this to look pleasant
... - 03:37 PM bug #6152 (Closed): Classification incomplete in WoRMS taxa
- completed
- 01:34 PM bug #6152 (Closed): Classification incomplete in WoRMS taxa
- *NOTE: This issue has been imported from bitbucket (issue 14). All timestamps have been reset during the import.*
... - 03:15 PM feature request #6156 (Closed): implement service to resolve the taxonomic parents of a taxon
- 03:12 PM feature request #6156 (Closed): implement service to resolve the taxonomic parents of a taxon
- 03:02 PM feature request #6145 (Closed): provide data on direct taxonomic children of a taxa
- This has been implemented by introducing the `/classification/{taxonId}/children` webservice.
- 01:17 PM feature request #6145 (Closed): provide data on direct taxonomic children of a taxa
- *NOTE: This issue has been imported from bitbucket (issue 7). All timestamps have been reset during the import.*
... - 02:54 PM Revision 22eb2e66 (cdmlib-apps): fix localH2 username in eFlora
- 02:52 PM Revision f4682883 (cdmlib-apps): ref #3925 fix excluded flag for Cuba
- 02:50 PM Revision 23f817ca (cdmlib-apps): Cleanup and gitignore in app-import
- 02:48 PM Revision 4688a314 (cdmlib-apps): Cleanup app-import test data
- 02:47 PM Revision 42ae65a2 (cdmlib): Cleanup merge model 4.1/develop
- 02:40 PM bug #6151: implement pager for search service
- For the time until the pager is really implemented I worked on the interim solution by relaxing the max hit setting f...
- 01:30 PM bug #6151 (In Progress): implement pager for search service
To save time I decided to change the strategy. I will not implement a general pager mechanism into utis. Not all ...- 01:29 PM bug #6151 (Closed): implement pager for search service
- UTIS is not retuning all possible results from the connected providers.
A pager for search service should be imple... - 02:26 PM Revision 4e14e4cb (cdmlib): Merge remote-tracking branch 'origin/develop' into develop
- 02:20 PM Revision a8b0ad5f (cdmlib): ref #5972: add service method to get count of referencing objects
- 01:43 PM feature request #6155 (Closed): hide the empty higherClassification property from the taxon object serialization
- implemented and tested
- 01:42 PM feature request #6155 (Closed): hide the empty higherClassification property from the taxon object serialization
- *NOTE: This issue has been imported from bitbucket (issue 17). All timestamps have been reset during the import.*
... - 01:41 PM feature request #6154 (Closed): optional inclusion of the parentTaxon into the search responses
- implemented and tested
- 01:38 PM feature request #6154 (Closed): optional inclusion of the parentTaxon into the search responses
- *NOTE: This issue has been imported from bitbucket (issue 16). All timestamps have been reset during the import.*
... - 01:36 PM bug #6153 (Closed): NPE during classification/{uuid}/parent request
fixed by commit commit:utis-core|d7a90b5
- 01:35 PM bug #6153 (Closed): NPE during classification/{uuid}/parent request
- http://cybertaxonomy.eu:80/eu-bon/utis/1.2/classification/0EB6CA37-3365-4AF5-A800-8FC4B8C366FA/parent?providers=pesi&...
- 01:28 PM bug #6150 (Closed): missing and wrongly maped data in EEA_BDC_Client resonses
- *originally closed on 2015-11-06*
DONE! - 01:28 PM bug #6150 (Closed): missing and wrongly maped data in EEA_BDC_Client resonses
- *NOTE: This issue has been imported from bitbucket (issue 12). All timestamps have been reset during the import.*
... - 01:27 PM feature request #6149 (Closed): EUNIS: periodically update local EEA data
- *originally closed on 2015-10-29*
implemented - 01:26 PM feature request #6149 (Closed): EUNIS: periodically update local EEA data
- *NOTE: This issue has been imported from bitbucket (issue 11). All timestamps have been reset during the import.*
... - 01:25 PM feature request #6148 (Closed): generate java client api based on swagger data
- *originally closed on 2015-11-06*
the client is available at http://dev.e-taxonomy.eu/gitweb/utis-client.git - 01:24 PM feature request #6148 (Closed): generate java client api based on swagger data
- *NOTE: This issue has been imported from bitbucket (issue 10). All timestamps have been reset during the import.*
... - 01:23 PM feature request #6147 (Closed): EUNIS: use offline rdf as suggested by EEA
- *originally closed on 2015-10-29*
this is fixed - 01:22 PM feature request #6147 (Closed): EUNIS: use offline rdf as suggested by EEA
- *NOTE: This issue has been imported from bitbucket (issue 9). All timestamps have been reset during the import.*
-... - 01:21 PM bug #6146 (New): The checklist details of the Response object are missing in xml responses
- *NOTE: This issue has been imported from bitbucket (issue 8). All timestamps have been reset during the import.*
-... - 01:15 PM feature request #6144 (Closed): the classsification object is not reflecting all possible ranks
- *originally closed on 2015-11-06*
this is fixed, the taxon object now has a list of 'higherClassificationInfo' o... - 01:09 PM feature request #6144 (Closed): the classsification object is not reflecting all possible ranks
- *NOTE: This issue has been imported from bitbucket (issue 6). All timestamps have been reset during the import.*
-... - 12:26 PM feature request #6143 (Closed): Classification.clazz should be serialized as class
- *originally closed on 2015-01-19*
done!
- 12:25 PM feature request #6143: Classification.clazz should be serialized as class
- Using a mixin has been tested
* ClassificationMixIn.class :
* SpringMVCConfig.getJsonViewResolver()
~~~ java... - 12:24 PM feature request #6143 (Closed): Classification.clazz should be serialized as class
- *NOTE: This issue has been imported from bitbucket (issue 5). All timestamps have been reset during the import.*
-... - 12:22 PM feature request #6142 (Closed): vernacular name search
- 12:20 PM feature request #6142: vernacular name search
- *originally closed on 2015-01-19*
implemented - 12:20 PM feature request #6142 (Closed): vernacular name search
- *NOTE: This issue has been imported from bitbucket (issue 4). All timestamps have been reset during the import.*
-... - 12:18 PM feature request #6141 (Closed): search with wildcard (like search) possible
- *originally closed on 2015-01-19*
implemented - 12:18 PM feature request #6141 (Closed): search with wildcard (like search) possible
- NOTE: This issue has been imported from bitbucket (issue 3). All timestamps have been reset during the import.
---... - 12:17 PM feature request #6140 (Closed): Create Terms of Service page and link it
- originally closed on 2015-01-19
- 12:16 PM feature request #6140 (Closed): Create Terms of Service page and link it
- NOTE: This issue has been imported from bitbucket (issue 2). All timestamps have been reset during the import.
---- - 12:15 PM bug #6139 (Closed): NPE in UtisController.search()
- *originally closed on 2015-01-19*
- 12:14 PM bug #6139 (Closed): NPE in UtisController.search()
- *NOTE: This issue has been imported from bitbucket. All timestamps have been reset during the import.*
----
The... - 12:08 PM Revision 4f080228 (utis-core): relaxing max result limit for BgbmEditClient - requires cdm 4.4.0 to be released
- 12:06 PM Revision 0842c388 (cdmlib): enabling http POST for a couple of name catalogue controller methods
- 11:48 AM feature request #5616: Add the"Open in..." menu to taxon search
- Katja Luther wrote:
> The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when ... - 10:09 AM feature request #5616: Add the"Open in..." menu to taxon search
- The problem seems to be in the calculation of the orphan value. A taxon is only orphaned when it is not used in a cla...
- 10:13 AM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog
- please have a look, if everything works as expected now.
- 08:43 AM Revision 41f187f1 (cdm-vaadin): ref #5458 Validation for settings dialogs
- 08:04 AM Revision 073d62ba (cdm-vaadin): ref #5458 Refactor SQLException handling
- 07:48 AM Revision 58dba687 (cdm-vaadin): ref #6131 Refactor settings dialog
- - extracted abstract class
- set style for OK/Cancel button
10/20/2016
- 05:55 PM Revision 54d20fb4 (cdm-vaadin): ref #5458 Remove generated scss files and add them to .gitignore
- 05:10 PM feature request #6058 (Resolved): Store NamedArea dialog filters more individually
- 05:09 PM Revision be719c48 (taxeditor): ref #6058 store named area filters more individually
- 04:04 PM Revision 4dea3eee (cdmlib): Merge remote-tracking branch 'origin/develop' into develop
- Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/taxon/TaxonNode.java
cdmlib-persistence/src/main/java/... - 03:59 PM feature request #5616: Add the"Open in..." menu to taxon search
- Andreas Müller wrote:
> The first issue seems to be fixed.
>
> Handling of orphaned taxa still does not work (nei... - 03:54 PM Revision 1435cedf (utis-client): bumping version to 1.2.0
- 03:45 PM bug #6101 (Closed): NPE when having multiple lanugage support disabled
- 03:20 PM Revision 2a495461 (taxeditor): Removed p6spy from classpath
- 03:00 PM Revision b30beda3 (taxeditor): minor changes for name details view configuration
- 03:00 PM Revision 568bfd14 (utis-webapp): Merge branch 'release/1.2.0'
- Conflicts:
pom.xml - 02:59 PM Revision 023bb80c (utis-webapp): bumping version to 1.2.0
- 02:52 PM Revision b7d7bc83 (utis-core): bumping version to 1.3.0-SNAPSHOT
- 02:52 PM Revision df91100b (utis-core): Merge tag '1.2.0' into develop
- tagging release 1.2.0
- 02:51 PM Revision 81e6fa25 (utis-core): Merge branch 'release/1.2.0'
- 02:50 PM Revision 20f01ac2 (utis-core): bumping version to 1.2.0
- 02:49 PM Revision 92a6f1d1 (utis-core): improving ambiguous test case
- 02:26 PM Revision f32ec72f (taxeditor): add the nameDetails configuration
- 02:13 PM Revision 924c6e0a (taxeditor): minor
- 01:59 PM bug #6138 (Closed): fix test testNoRecursiveChangeEvents() in DerivedUnitFacadeTest
- this test fails with
~~~ text
Caused by: org.h2.jdbc.JdbcSQLException: Eindeutiger Index oder Primärschlüssel ve... - 01:55 PM feature request #6050 (New): provide the possibility to choose the fields of the simple details view for names
- the configuration is implemented now, please have a look, if it is ok or if more fields should be configurable.
- 01:55 PM feature request #6050 (Resolved): provide the possibility to choose the fields of the simple details view for names
- Applied in changeset commit:taxeditor|76b874f88b5e44d9cf572760d39fecad6a99cdf7.
- 01:55 PM Revision 76b874f8 (taxeditor): fix #6050: add the possibility to configure which fields should be displayed in name details view
- 01:10 PM Revision 8840fbf0 (utis-webapp): optional deduplication of the result set by different methods
- 01:04 PM Revision 7ae4f425 (cdmlib): childNode needs to be saved in TestService to fix the editor test
- 12:56 PM Revision 78587134 (taxeditor): fix test
- 12:11 PM Revision 3a1af46b (cdmlib): set test to ignore, create ticket to fix this.
- 12:10 PM Revision 1a9b03bb (cdmlib): fix failing test
- 11:44 AM Revision 7ae6b88e (cdmlib): minor
10/19/2016
- 09:50 PM task #6137 (In Progress): Urgent imports
- PESI
MCL (#10048)
Uzbekistan #8996 (taxa), #9041 (altitudes), #9049 (habitats), #9125 (descriptions), #9126 (ph... - 08:44 PM bug #6136 (New): Implement type providing name in homotypical group
- For discussion see #6041.
Still need to decide if this is really the best solution.
Ask Greuther.
Is there alwa... - 07:14 PM task #6135 (Closed): Remove authors from Taxonomische Großgruppe
- ... or make it configurable
Taxonomische Großgruppe
* Autorenschaft soll da nicht angezeigt werden
Was meint... - 07:13 PM feature request #6134 (Closed): Allow grouping by Taxonomische Großgruppe
- - Ja, wir brauchen auch eine Gruppierung nach den Taxonomischen Gruppen wie von dir beschrieben.
OK, versuche ich e... - 07:03 PM feature request #6133: Improve Rank Webservice
- /termVocabulary/ef0d1ce1-26e3-4e83-b47b-ca74eed40b1b/terms.json?orderBy=BY_ORDER_INDEX_ASC
- Ich dachte, die Ränge ... - 07:02 PM feature request #6133 (Closed): Improve Rank Webservice
- * ~~Filter ranks by those used in Edaphobase~~
* ~~Or if use findByMarker add sortindex/order ranks by sortindex~~... - 06:48 PM feature request #6128: Include authorship in taxon search web service
- SL: Bis jetzt haben wir einfach angenommen, dass alles, was angezeigt wird, auch durchsuchbar ist. Wir brauchen diese...
- 05:49 PM Revision 2598d085 (utis-core): setting problematic tests to ignore (these clients are not officially supported in utis)
- 05:33 PM Revision 577c70db (utis-webapp): fix #16 adding parentTaxon parameter to search endpoint
- 05:32 PM Revision cc2fc25c (utis-core): fix #16 optional inclusion of the parentTaxon into the search responses fully implemented
- 04:31 PM Revision 9b52adf5 (utis-core): solving #17 and preparing #16 \n - #17 hide the empty higherClassification property from the taxon object serialization\n - #16 optional inclusion of the parentTaxon into the search responses
- 04:29 PM Revision 813eb4bc (utis-core): fixing higherClassification mode in EUNIS Client
- 01:16 PM Revision b16cfdc4 (utis-core): higherClassification action test for PESIClient
- 12:18 PM Revision 5c8b52af (cdm-vaadin): ref #5458 Add property formatting for distribution table
- 12:01 PM Revision 3fe30b48 (utis-core): test for PESIClient
- 11:42 AM Revision d7a90b5c (utis-core): fixing #15 NPE during classification/{uuid}/parent request
10/18/2016
- 07:51 PM Revision c872e418 (cdmlib): Merge remote-tracking branch 'origin/cdm-4.1' into develop
- 07:50 PM Revision 904c8661 (cdmlib): minor
- 07:31 PM Revision b72cb56a (cdmlib): remaining merge issue for morge develop to cdm4.1
- 06:52 PM Revision aabd8c12 (cdmlib): Merge remote-tracking branch 'origin/develop' into cdm-4.1
- Conflicts:
cdmlib-db/pom.xml
cdmlib-ext/pom.xml
cdmlib-io/pom.xml
cdmlib-io/src/main/java/eu/etaxonomy/cdm/io/exc... - 06:45 PM Revision d196eb4d (cdm-vaadin): ref #5458 Usability and UI tweaks
- 06:40 PM bug #6129 (Resolved): After creating a new Reference in selection dialog, it could not be found in the selection dialog
- Applied in changeset commit:taxeditor|5a8a1f1453f51d9a99421a6d137f707c266a08b7.
- 06:40 PM feature request #5891 (Resolved): Taxon appended phrase should not allow empty string
- Applied in changeset commit:taxeditor|ceaa3fed461d7c19d3fc124917b4bbfeb35d3f36.
- 06:40 PM Revision 8f8aae13 (cdm-dataportal): whitespace
- 06:38 PM Revision e8d43aef (cdm-dataportal): whitespace
- 06:36 PM feature request #5634: Excluded note for excluded taxa /taxon nodes
- Applied in changeset commit:cdmlib|1e55f5c2544860c52cea161e4edcff5ef2e1bbfa.
- 05:45 PM feature request #5634 (Resolved): Excluded note for excluded taxa /taxon nodes
- 06:36 PM feature request #5974 (Resolved): Remove synonym relationships
- Applied in changeset commit:cdmlib|d7fa3e131995dd5543514aa3afd71fdd31b59bf5.
- 06:36 PM feature request #5952: Second cache field for specimen (identityCache)
- Applied in changeset commit:cdmlib|7e03e21e1ae317b2fc610adf44deabb82083a083.
- 05:57 PM Revision b8e7047b (cdm-vaadin): ref #5458 Performance increase for taxon node selection
- - by using SqlContainer the nodes are lazily loaded
- child nodes are loaded via a second SQL query which is filtere... - 05:55 PM Revision a8118bab (cdm-vaadin): ref #5458 remove distribution selection view
- 05:52 PM Revision 84f54e17 (cdmlib): update remote-webapp test H2 to model 4.1
- 05:51 PM Revision 1e55f5c2 (cdmlib): fix #5634 Update excluded/unplaced for TaxonNodes with no taxon_id
- 05:17 PM Revision c3c1740f (cdmlib): minor
- 04:53 PM Revision d7fa3e13 (cdmlib): fix #5974 fix moving synonym type to TaxonBase and SynonymRelationType label
- 04:07 PM Revision e0af1680 (cdmlib): fix clone test for Media
- 04:00 PM Revision ced4a690 (cdmlib): remove final from classification.description
- 03:58 PM Revision c10a757f (cdmlib): minor
- 03:58 PM Revision 8e6c53f9 (cdmlib): ref #5634 fix clone issue for excludedNote
- 03:57 PM Revision 4cf3d32a (cdmlib): Cleanup language string handling and cloning
- 02:16 PM Revision 33b908b7 (cdmlib): minor
- 02:15 PM Revision b362a2c0 (cdmlib): ref #5952 Add index to identityCache
- 02:14 PM Revision 3f43c155 (cdmlib): cleanup
- 02:13 PM Revision 4bfde47a (cdmlib): ref #3658 further improvements for NomCode update
- 02:11 PM Revision 45c1a780 (cdmlib): #5634 Add excludedNote to TaxonNode (still some tests not running)
- 02:07 PM Revision 1402e210 (cdmlib): ref #3925 Adapt tests for moving unplaced and excluded
- 11:13 AM Revision c2f0001b (taxeditor): ref #6050: test git/redmine and add the pref keys for configurable details view
- 10:37 AM Revision 3b0bc0db (cdm-vaadin): ref #5458 performance tweak for distribution status selection
- 10:29 AM Revision 08a698af (cdmlib): ref #6099: removing cascading to child nodes and adapting the service and persistence layer
- 10:28 AM bug #6099: Duration of save is increasing
- to reduce the saving time we removed the cascading to the child taxa.
please test the editor, if everything works as... - 09:59 AM Revision 88b1995d (cdmlib): ref #5431: the type designation blocks the name deletion only if it is the type name
- 09:20 AM bug #6120 (Closed): Cleanup uuidAndTitleCache methods
- tested all selection dialogs where it is used and it seems to work.
10/17/2016
- 06:18 PM bug #6131 (Closed): Vaadin DistributionEditor TODOS
- - ~~ok/cancel button in settings window -> same min width~~
- ~~if only 1 classification -> autoselect~~
- ~~NPE wh... - 05:32 PM bug #6130: Areafilter widget broken
- Typing in the text field is no longer filtering the selection of areas
- 05:30 PM bug #6130 (Closed): Areafilter widget broken
- This is a regression which might have been introduced while solving #6087
- 05:25 PM Revision e11ccba6 (cdm-vaadin): ref #5458 UI tweak for settings window
- 01:31 PM Revision 32bf574c (cdm-vaadin): ref #5458 Add support for setting distribution status filter in settings
- 01:30 PM Revision bd46f97b (cdm-vaadin): ref #5458 Fix potential NPE
- 01:15 PM Revision 5a8a1f14 (taxeditor): fix #6129: remove additional authorstring in selection dialog search field
- 01:13 PM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog
- This is because the search pattern is created out of the abbrevTitleCache concatinated with the authorstring.
Removi... - 01:10 PM bug #6129 (Closed): After creating a new Reference in selection dialog, it could not be found in the selection dialog
- mail von Norbert:
ich möchte sicherheitshalber nochmal an meine Bugmeldung vom 28.7.16 erinnern, welche vielleicht... - 01:00 PM Revision 0f09a07c (cdm-vaadin): ref #5458 Fix initial opening of settings window
- 12:59 PM Revision dc4aa464 (cdm-vaadin): ref #5458 Layout for settings windows
- 12:47 PM Revision 5eece89f (cdm-vaadin): ref #5458 Split settings window into two
- - one for distribution/taxonomy settings and one for other setting
- 10:12 AM Revision ceaa3fed (taxeditor): fix #5891: save null instead of empty string for text fields
10/16/2016
- 09:30 PM feature request #6128 (Closed): Include authorship in taxon search web service
- /portal/taxon/find?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&doTaxa=1&pageNumber=0&pageSize=10&query={qu...
10/14/2016
- 05:10 PM Revision 4229bb22 (cdmlib): ref #5826 adapt update script
- 04:35 PM feature request #3363 (In Progress): dagger (Totenkreuz) after extinct and fossil taxa
- 04:26 PM feature request #3925 (Resolved): Unplaced and excluded to TaxonNode
- 04:16 PM Revision 745b0cdf (cdmlib): Correct errors in update script
- 04:13 PM Revision 98053545 (cdmlib): ref #3925 Move excluded and unplaced to TaxonNode
- 04:12 PM task #6028 (Closed): Post-migration (trac->redmine) fixes
- The obsolete custom fields have all been disabled and can be deleted.
- 03:46 PM task #6020 (Closed): Consider replacing custom field 'keywords' by redmine_tags
- The tags plugin is now enabled and the keywords have been migrated to tags.
I will also disable the keywords custo... - 03:20 PM task #6029 (Closed): trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
- The fix is now applied to the production system.
- 12:00 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
- Looks good.
I tested with http://130.133.70.38/redmine/projects/edit/issues?c%5B%5D=subject&c%5B%5D=priority&c%5B%... - 12:57 PM bug #5676: Sensu does not show up if no author exists for secundum reference
- This issue is ready for reviewing.
I created a dedicated test case which should cover all aspects: http://int.e-ta... - 12:05 PM Revision e29e2ebd (taxeditor): smaller changes for specimen import and others
- 11:58 AM Revision 761340e4 (cdm-dataportal): ref #5676 test for correct sensu representation of misapplied names
- 11:53 AM Revision 4bccf32d (taxeditor): minor changes in excel import wizard
- 11:44 AM Revision cd704234 (taxeditor): minor
- 11:39 AM Revision aeff6228 (taxeditor): delete transient services
10/13/2016
- 11:54 PM Revision 60dd84cb (cdmlib): fix #5952 Add identityCache
- 11:53 PM Revision d0353186 (cdmlib): cleanup
- 11:46 PM bug #6127 (Closed): NPE in NameCatalogue Controller on name_catalogue/taxon
- fixed
- 05:49 PM bug #6127: NPE in NameCatalogue Controller on name_catalogue/taxon
- For the review please click this:
http://test.e-taxonomy.eu/cdmserver/cichorieae/name_catalogue/taxon?classificat... - 05:46 PM bug #6127 (Resolved): NPE in NameCatalogue Controller on name_catalogue/taxon
- Applied in changeset cdmlib:commit:cdmlib|3fa85b454e525c42baf068b4f7cf9ecaad757fb1.
- 05:41 PM bug #6127 (Closed): NPE in NameCatalogue Controller on name_catalogue/taxon
http://api.cybertaxonomy.org:80/cichorieae/name_catalogue/taxon?classification=76b17487-3df4-41c7-8043-2bbb266eac...- 06:26 PM Revision 75f20bed (cdm-vaadin): ref #5458 Center detail window
- 06:26 PM Revision cb4029b0 (cdm-vaadin): ref #5458 Redesign navigation architecture
- - after login the user will be redirected directly to the table view
and the settings dialog will be opened
-made se... - 06:26 PM Revision 092fd728 (cdm-vaadin): ref #5458 Update selected distribution status after selection
- 06:26 PM Revision 3f6f86d5 (cdm-vaadin): ref #5458 Replace term dropdown with popup window for performance
- 06:26 PM Revision fda2cb06 (cdm-vaadin): ref #5458 Add toggle button for abbreviations to settings menu
- - extract constants for session attributes
- 06:26 PM Revision 70ea5d03 (cdm-vaadin): Trim Code + add serial version uid
- 05:46 PM Revision 3fa85b45 (cdmlib): fix #6127 handling case the taxon has no LSID, avoid NPE in NameCatalogeController
- 05:19 PM Revision 8ebd16d6 (cdm-dataportal): fixing selenium support for chrome browser
- 05:00 PM feature request #5952 (Resolved): Second cache field for specimen (identityCache)
- 04:58 PM feature request #5952: Second cache field for specimen (identityCache)
- 255 characters should be enough as it should be a short cache only holding most important identifiers
- 04:59 PM Revision 7e03e21e (cdmlib): fix #5952 Add fieldNumberCache
- 04:34 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
- Looks good. I tested it with the following query and could not find any differences between keywords and tags:
htt... - 04:24 PM feature request #5981 (Resolved): Add abbreviation to Rank "Cultivar"
- 04:23 PM Revision bcdf42bc (cdmlib): fix #5981 Add abbreviation to Rank "Cultivar"
- 04:09 PM Revision f6db28c4 (cdm-vaadin): cleanup
- 03:45 PM bug #3658 (Resolved): Update Nomenclatural code for datasources
- 03:44 PM feature request #5974 (In Progress): Remove synonym relationships
- 03:34 PM bug #4461 (Resolved): Ordering in datasources view fails
- 03:23 PM bug #5676 (Resolved): Sensu does not show up if no author exists for secundum reference
- Applied in changeset commit:cdm-dataportal|763b610cafda73d41d185ddb4e44f8baa701c0a2.
- 03:23 PM Revision 763b610c (cdm-dataportal): fix #5676 displaying the reference titleCache as sensu if authors are missind; also solving other problems
- 02:46 PM Revision 5d177a2e (taxeditor): minor
- 02:28 PM Revision eff603b4 (taxeditor): remove experimental code
- 01:42 PM Revision 030ad7c6 (cdmlib-apps): ref #5499 latest changes to Edaphobase import
- 01:41 PM Revision 3ef2e1bd (cdmlib-apps): ref #5974 Remove synonym relationships (not finished yet)
- 01:30 PM Revision a4947270 (cdmlib-apps): ref #3658 remove nomenclaturalCode
- 01:21 PM feature request #6126 (New): Make the label for nomenclatural status configurable
- add the possibility to configure whether the labels of the drop down menu are the title or the abbrev of the nomencla...
- 01:15 PM Revision fc545014 (taxeditor): minor
- 01:15 PM bug #5692 (Resolved): Delete a person within the bulk editor deletes the person even if not saved
- Applied in changeset taxeditor:commit:taxeditor|7dce04a4ef06e30769a711c8b6aceb11b2137c31.
- 01:07 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- I adapted the deletion to the merging and added the delete configurator to the lineAnnotation. Now the objects are an...
- 01:15 PM Revision 7dce04a4 (taxeditor): fix #5692: adapt delete algorithm to annotatedLineEditor mechanisms
- 01:14 PM Revision c0248cde (cdmlib): ref #3658 remove nomenclaturalCode from all datasource related classes
- * and rename NomenclaturalCodeAwareDataSource
- 12:17 PM task #5083: Alternative image viewer for dataportal
- The Universalviewer has now commonly accepted, even if there are concerns, but it is so far the best solution we have...
- 12:06 PM task #5083: Alternative image viewer for dataportal
- *Ralf Hand wrote:*
Hallo Andreas,
danke für den Link. Wir als sehr fotoorientiertes Projekt sind nicht uneinge... - 11:57 AM Revision 4b36c12a (cdmlib): ref #3658 Update nomenclatural code as CdmPreference (most probable value)
- 11:52 AM Revision 5dc46163 (cdmlib): cleanup
- 11:52 AM Revision cb96157e (cdmlib): ref #3658 Update nomenclatural code as CdmPreference (most probable value)
- 11:42 AM task #5943 (Closed): back to search button/link should go into a drupal block
- Enablement of the new block is done automatically when running the module update script, so no further action needs t...
- 11:16 AM task #5943 (Resolved): back to search button/link should go into a drupal block
- Applied in changeset commit:cdm-dataportal|beb914ef020af7daeaf97ce1f75d7bcb098dc9eb.
- 11:39 AM Revision d27e2b08 (cdm-dataportal): ref #5943 update script improvements
- 11:35 AM Revision fdb0f1fc (cdm-dataportal): ref #5943 update script improvements
- 11:16 AM Revision beb914ef (cdm-dataportal): fix #5943 back to search button/link moved to drupal block
- 11:09 AM Revision 152fcd76 (cdmlib): ref #5974 Replace synonym relationship update scripts (untested)
- 11:09 AM Revision 066c9dde (cdmlib): clean up and java doc
- 11:07 AM Revision 741a4c05 (cdmlib): #3547 remove not needed dataset.dtd from persistence
- 09:58 AM Revision fbeefcaf (cdmlib): ref #5974 Replace synonymRelationshipType by SynonymType and replace some other occurrences of synonym relationship
10/12/2016
- 09:00 PM Revision f476ff86 (cdmlib): ref #5974 Remove synonym relationship first compiling implementation in cdmlib
- 03:12 PM Revision 88505483 (taxeditor): removing p6spy dependencies
- 03:04 PM Revision 7b6ed357 (cdmlib): IDE launcher config cdmlib-remote-webapp-unit-test
- 03:02 PM Revision df435453 (cdmlib): relaxing web service access restrictions
- 01:35 PM Revision ac7fcb04 (taxeditor): minor
- 12:13 PM Revision 558d5bd1 (cdm-vaadin): ref #5458 extract constants for session attributes
- 12:05 PM Revision 5f031b4f (cdm-vaadin): ref #5458 Error handling for abbreviated labels
10/11/2016
- 06:32 PM Revision 19e3a309 (taxeditor): removing generated file
- 06:29 PM Revision ecac085c (taxeditor): Revert "ref #6118 catching exception during checkConnection"
- This reverts commit bb7b4f601b49f1ba29f149405246f120b4c46a9a.
- 06:13 PM Revision 2cb5f120 (taxeditor): ref #6124 fixing Bundle-Version
- 06:09 PM task #6125 (New): Implement tests for OAuth2 in cdmlib-remote
- The tests in spring-projects/spring-security-oauth samples/oauth2/sparklr project are a good start!
- 04:53 PM Revision 785fc5d7 (cdm-vaadin): ref #5458 Add abbreviated labels to distribution table
- 04:46 PM Revision ca35dbce (taxeditor): OOPS!
- 04:44 PM Revision 868c5623 (taxeditor): fixing project version in pom.xml which was not updated after the relase
- 04:19 PM Revision bb7b4f60 (taxeditor): ref #6118 catching exception during checkConnection
- 03:35 PM bug #5948 (Resolved): supress protologue icon if according media uri is missing
- Applied in changeset cdm-dataportal:commit:cdm-dataportal|275b2642c2438013cb1ac06bb986dceb388592d7.
- 01:36 PM bug #5948 (In Progress): supress protologue icon if according media uri is missing
- 01:36 PM bug #5948 (Rejected): supress protologue icon if according media uri is missing
- 03:35 PM Revision 275b2642 (cdm-dataportal): fix #5948 supressing media when uri is missing, also turning theme function into plain markup function
- 03:18 PM Revision e693adbd (cdm-vaadin): ref #5458 Reduce size of distribution table
- - Show only abbreviated labels for presence absence terms
- 02:22 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- Whatever solution we choose please cover it with an according test.
- 02:19 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- Katja Luther wrote:
> Katja Luther wrote:
> I don't want to change the readonly=false, but maybe it is possible to ... - 12:22 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > The problem seems to be that we have to ... - 11:58 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- Andreas Müller wrote:
> Katja Luther wrote:
> > The problem seems to be that we have to use the @transactional(read... - 11:43 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- Katja Luther wrote:
> The problem seems to be that we have to use the @transactional(readonly=false) and this means ... - 11:30 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- The problem seems to be that we have to use the @transactional(readonly=false) and this means that the commit is call...
- 02:21 PM Revision 49a35b7d (cdm-vaadin): ref #5458 Refactoring
- - removed single implemented interfaces
- merged methods
- removed unnecessary try&catch blocks - 01:32 PM Revision 0b554b40 (cdm-dataportal): fix #6110 using the same request protocol for the map service
- 01:25 PM feature request #6110: Use https for map service calls when the portal is access via https
- This needs to be tested at the edit-test server. The following requirements need to be fulfilled for testing:
* po... - 01:22 PM feature request #6110 (Resolved): Use https for map service calls when the portal is access via https
- Applied in changeset commit:cdm-dataportal|7aeb752750a73e9a99fa20b4c3e932aae49a2a94.
- 01:21 PM Revision 7aeb7527 (cdm-dataportal): fix #6110 using the same request protocol for the map service
- 11:15 AM Revision f9837f2a (cdm-vaadin): ref #5458 Add TermCacher class
- 10:46 AM Revision 4f7ccb87 (cdm-vaadin): ref #5458 Implement multi select for NamedArea selection
- 10:04 AM task #6118: evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
- updating development test script to latest implementation
- 10:01 AM Revision 638f3be5 (cdmlib): ref #6118 OAuth2 ready for production
- - removing development setup
- UserController to return details on the authenticated principal - 10:01 AM Revision 9872d2b2 (cdmlib): ref #6118 working test implementation of OAuth2
- - grant types 'implicite', 'authorization_code' tested and working
- /manage/ service protected (OK for production... - 10:01 AM Revision 01fe562b (cdmlib): ref #6118 OAuth2 AuthorizationServer implemented
- 10:01 AM Revision 9d398078 (cdmlib): rel #6118 switching from xml to java based web security configuration
- 10:01 AM Revision e5c1f174 (cdmlib): cleaning indent
10/10/2016
- 10:39 PM task #6118: evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
- Adding shell script to test different authentication modes.
- 04:38 PM Revision e37d3114 (cdm-vaadin): ref #5458 Add generated serial version uid
- 10:17 AM Revision c1c005ed (cdm-vaadin): Remove generated css files and add them to .gitignore
10/09/2016
- 04:16 PM bug #6119 (Resolved): Implement uuidAndTitleCache remote services
- 04:13 PM bug #6119 (In Progress): Implement uuidAndTitleCache remote services
10/07/2016
- 07:10 PM task #3547 (In Progress): Remove size of test data where possible
- 07:06 PM Revision d5d3fb6e (cdmlib): ref #3547 remove testDelete-result1 and cleanup and reuse testDelete-result
- 06:30 PM Revision 52ee385e (cdmlib): ref #3547 Cleanup TaxonDaoHibernateImplTest.xml
- 04:56 PM Revision 77cb7459 (cdmlib): ref #3547 fix related tests
- 04:06 PM Revision 9a3490b1 (cdmlib): ref #3547 Cleanup TaxonDao.testGetTaxaByNameAndArea.xml test data a bit
- 03:46 PM Revision 8831fc56 (cdmlib): ref #3547 Cleanup TaxonDao.testFindDeleted test data
- 03:35 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
- This is the same for taxa and names.
- 03:30 PM Revision 58c5052a (cdmlib): ref #3547 Cleanup TaxonDao.testFind test data
- 03:27 PM bug #3658 (In Progress): Update Nomenclatural code for datasources
- 03:11 PM Revision 683f6ce0 (cdmlib): ref #5972: add method to count referencing objects
- 03:08 PM bug #5888: Deleting factual data does not work (dirty flag not set)
- the description needs to be passed to the postExecute method, this triggers the dirty flag.
- 03:04 PM bug #5888 (Resolved): Deleting factual data does not work (dirty flag not set)
- Applied in changeset taxeditor:commit:taxeditor|a3e69a37383c07c575a7592c1093f68dcc6e830a.
- 03:06 PM Revision ed506dcb (cdmlib): fix #6089 Remove taxonomicParentCache and taxonomicChildrenCount, fix Testdata
- 03:03 PM Revision a3e69a37 (taxeditor): fix #5888: add the element as argument to postExecute method s
- 12:27 PM bug #5832: It is not possible to search for hybrids in taxon search
- This is because hybrids do not have a namecache and the search works on the nameCache.
- 11:22 AM task #6089 (Resolved): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
- Applied in changeset cdmlib:commit:cdmlib|30451d3cd027497576ee106c435c62d4b5021e9a.
- 11:22 AM Revision 30451d3c (cdmlib): fix #6089 Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
- 11:17 AM Revision a14ebae1 (cdmlib): remove ImportReport in model branch
- 11:13 AM bug #6120: Cleanup uuidAndTitleCache methods
- Applied in changeset cdmlib:commit:cdmlib|c6af6a3d58f8fa0ec2a803f8651b8acd04139fde.
- 11:13 AM bug #6072: Implement getTaxonomicGroups for Edaphobase
- Applied in changeset cdmlib:commit:cdmlib|1e8a54ffa558ce07fa340c307d6ec447a8f66d40.
- 10:53 AM Revision 4f2fff32 (cdmlib): minor
- 10:53 AM Revision 4881f5e5 (cdmlib): ref #5499 add some markerType methods
- 10:53 AM Revision 062fde15 (cdmlib): fix #6122 fix signature issue
- 10:53 AM Revision b4b7bfe8 (cdmlib): fix #6122 add titleCache service to remote
- 10:53 AM Revision 2d1fc4f4 (cdmlib): Use abstract controller for identifiable controllers
- 10:53 AM Revision 4642e957 (cdmlib): Create and rename Identifiable(List)Controllers
- 10:53 AM Revision 40812151 (cdmlib): fix #6122 add titleCache service
- 10:53 AM Revision 33754b79 (cdmlib): fx #6119 Implement uuidAndTitleCache remote services
- 10:53 AM Revision c6af6a3d (cdmlib): fix #6120 Cleanup uuidAndTitleCache methods
- 10:53 AM Revision 77351513 (cdmlib): Minor cleanup
- 10:53 AM Revision 51cfe899 (cdmlib): add missing changes
- 10:53 AM Revision 4b37153c (cdmlib): minor
- 10:52 AM Revision 91e5776b (cdmlib): specimen import/search changes
- 10:44 AM Revision d9b720ac (cdmlib): delete system.out.println from test
- 10:44 AM Revision bb8caa72 (cdmlib): Updating develop poms back to pre merge state
- 10:41 AM Revision 49773574 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 10:35 AM Revision 04b17372 (cdmlib): updating poms for branch'release/4.3.0' with non-snapshot versions
- 10:23 AM Revision 75921880 (cdmlib): updating poms for 4.4.0-SNAPSHOT development
- 10:23 AM Revision ff7f5e37 (cdmlib): Rename doPageChildNodes
- 10:23 AM Revision 189558f3 (cdmlib): ref #6065 improved Pager handling
- 10:23 AM Revision 21d66ebf (cdmlib): ref #6065 improved Pager handling and pager exception handling
- 10:23 AM Revision d8c4f8b9 (cdmlib): ref #6065 Handle synonyms in taxonInContext
- 10:23 AM Revision 7dde0731 (cdmlib): Cleanup
- 10:23 AM Revision 1d54cd17 (cdmlib): ref #6065 fix NPEs in classification service
- 10:23 AM Revision ae7b9470 (cdmlib): ref #6065 fix NPE in pageSize/limit
- 10:23 AM Revision 8c2c6a09 (cdmlib): ref #6065 fix NPE in pageSize
- 10:23 AM Revision 4f290ba6 (cdmlib): ref #6065 fix page size and add marked ancestors
- 10:23 AM Revision fe053257 (cdmlib): ref #6065 fix missing taxonUuid in URL
- 10:23 AM Revision d17b9e90 (cdmlib): ref #6065 first implementation of taxonInContext service
- 10:23 AM Revision 50355d23 (cdmlib): cleanup
- 10:23 AM Revision 3a646557 (cdmlib): further refactor FindByIdentifierDTO and FindByMarkerDTO
- 10:23 AM Revision 912932b1 (cdmlib): rename FindByIdentifierDTO and FindByMarkerDTO
- 10:23 AM Revision 83220271 (cdmlib): Revert "fix #6037 per batch transction commit implemented for excel imports"
- This reverts commit 53067226137bd8528e6bc26f21edbf98aebe26a9.
- 10:23 AM Revision f6930dd5 (cdmlib): ref #6066 rename childNodes to childNodesByTaxon in ClassificationController
- 10:23 AM Revision b296585f (cdmlib): ref #6066 add getChildNodes to classification service
- 10:23 AM Revision 87e6bb6f (cdmlib): ref #6087 adding orderINdex to TermDTO
- 10:23 AM Revision f742ce44 (cdmlib): ref #6066 fix Index out of bound exception
- 10:23 AM Revision 38b82688 (cdmlib): fix #6061: search in titlecache and nomenclatural titleCache in getUuidAndAbbrevTitleCache
- 10:23 AM Revision 6a70de90 (cdmlib): fix failing IPNI Service Test
- 10:23 AM Revision 1b107dc2 (cdmlib): revert tests
- 10:23 AM Revision 4dc39e99 (cdmlib): Ignore service test
- 10:23 AM Revision 0cf72dcb (cdmlib): ref #6072 test missing entity in webservice
- 10:23 AM Revision 5c95a5bf (cdmlib): ref #6072 test missing entity in webservice
- 10:23 AM Revision c70c5dcb (cdmlib): ref #6072 set defaults to false and hardcode includeEntity to true for debugging
- 10:23 AM Revision 51104f62 (cdmlib): ref #6072 fix signature issue in remote (2nd try)
- 10:23 AM Revision 5dd4feb8 (cdmlib): ref #6072 fix signature issue in remote
- 10:23 AM Revision c46bcf17 (cdmlib): ref #6072 fix compilation issue in IIdentifiableEntityService
- 10:23 AM Revision d28fe45c (cdmlib): Cleanup
- 10:23 AM Revision 1e8a54ff (cdmlib): fix #6072 Implement findIdentifiableEntityByMarkers
- 10:23 AM Revision 4fb554ff (cdmlib): ref #6089 Remove failing irrelevant test
- 10:23 AM Revision e5605065 (cdmlib): ref #6089 Remove all calls and methods for taxonomicChildrenCount and taxonomicParentCache
- 10:23 AM Revision 9f1aa368 (cdmlib): Cleanup; Delete unnecessary test classes.
- 10:23 AM Revision 19ef2a42 (cdmlib): fix #6066 Implement doPageChildNodes with doSynonyms
- 10:23 AM Revision 1d5f625c (cdmlib): Clean up
- 10:23 AM Revision e4b34dc5 (cdmlib): Adapt failing test in NonViralNameParserImplTest
- 10:23 AM Revision 84bb1d2c (cdmlib): ref #6086 solving the problems in the java-script of the web application monitor widget:
- - chunk information: number rounded and label renamed
- Percentage number rounding fixed - 10:23 AM Revision d178ecb9 (cdmlib): ref #6086 fix failing test
- 10:23 AM Revision 4cb92234 (cdmlib): rel #6086 Improve rounding for progress monitor
- * fix error in rounding by using round not ceil
* add method for user defined scaled rounding - 10:23 AM Revision be0e5d61 (cdmlib): some cleanup
- 10:23 AM Revision 7258c318 (cdmlib): fix #5837: search on abbrevTitleCache instead of abbrev title
- 10:23 AM Revision 95f65f5e (cdmlib): correcting erroneous commit
- 10:23 AM Revision 10b839e4 (cdmlib): gitignore
- 10:23 AM Revision 4aa98446 (cdmlib): fix #4497 solving problem with status parameter in taxon search
- 10:23 AM Revision 1990fe50 (cdmlib): ref #5969: add PreferenceService to applicationController
- 10:23 AM Revision 77c1c705 (cdmlib): Remove duplicate method
- 10:23 AM Revision 07a6e50e (cdmlib): rel #5957 improve tests for groupTaxaByHigherTaxon
- 10:23 AM Revision a8609cad (cdmlib): fix #5957 fix IndexOutOfBound exception and some other improvements for groupByHigherTaxon
- 10:23 AM Revision c00d3bcc (cdmlib): minor
- 10:23 AM Revision 05e59317 (cdmlib): better percentage values from Progressmonitor
- 10:23 AM Revision d436abeb (cdmlib): fix #6061: search for titlecache if abbrev title is empty
- 10:23 AM Revision 03c8f07b (cdmlib): fix #6061: smaller changes
- 10:23 AM Revision 5ef16029 (cdmlib): ref #6032 Remove test for rank as mentioned in ticket
- 10:23 AM Revision f995ae78 (cdmlib): Add Vorabdr. to parsable volume
- 10:23 AM Revision f380413e (cdmlib): minor
- 10:23 AM Revision e1c69e2f (cdmlib): minor
- 10:23 AM Revision 3d36bbcd (cdmlib): smaller changes for importing nom. reference in normal explicit excel import
- 10:22 AM Revision f44fb5c3 (cdmlib): normal explicit excel import: add reference to name import
- 10:22 AM Revision 0c949c56 (cdmlib): Add javadoc for languages
- 10:22 AM Revision d40ad0be (cdmlib): fix #6060 parse author with -e-
- 10:22 AM Revision 9892fe45 (cdmlib): rel #6057 further improvements for authors with accent grave
- 10:22 AM Revision a333126e (cdmlib): fix #6057 Accent Graph in author parser
- 10:22 AM Revision 9fc0e990 (cdmlib): ref #4260 Added test for 0 parameter query
- 10:22 AM Revision f3755e6f (cdmlib): ref #6045 some comments and clean up
- 10:22 AM Revision 6d3f64b8 (cdmlib): minor changes in excel import
- 10:22 AM Revision e2b14fdb (cdmlib): adding missing test file for tropicos import
- 10:22 AM Revision 47da1bc9 (cdmlib): extend excel import to cover simple tropicos data
- 10:22 AM Revision f3e8146c (cdmlib): ref #6032 test name parser support for hybrid ranks and non-hybrids
- 10:22 AM Revision ec9e0b76 (cdmlib): ref #6030 Add additional test for genus hybrid formula parsing
- 10:22 AM Revision 50aca191 (cdmlib): fix #5893: set parse reference public to use it in fauna europaea import
- 10:22 AM Revision 4cae9071 (cdmlib): fix #6030 Parse Genus hybrid formulas correctly
- 10:22 AM Revision 2f495573 (cdmlib): ref #6045 Add test for getAncestor()
- 10:22 AM Revision 889c7e91 (cdmlib): fix #6045: fixing the NaturalOrderComparator and complete the test
- 10:22 AM Revision aa478e85 (cdmlib): ref #6045 Fix NPE for TaxonNaturalComparator
- - fix getAncestors() method of taxon node
- added JUnit test - 10:22 AM Revision a9e92136 (cdmlib): fix #5869 adapt implementation for reusing names or taxa with remoting
- 10:22 AM Revision cd53ed98 (cdmlib): ref #5837 implement search for nomenclatural title
- 10:22 AM Revision a82e8663 (cdmlib): ref #6042 Avoid -title cache generation not implemented- for citations
- in specimen table view
- 10:22 AM Revision db7c13f4 (cdmlib): fix #5828: add abbrevTitleCache and titleCache to uuidAndTitleCache
- 10:22 AM Revision c13b20b4 (cdmlib): revert the changes in representation of rank infraspecific unranked
- 10:22 AM Revision 81bcaf06 (cdmlib): Remove @Ignore from test
- 10:22 AM Revision 075bc33f (cdmlib): Fix merge problems
- 10:22 AM Revision d81a4119 (cdmlib): fix #6001 Clean up multiple sourceNotLinked() methods
- 10:22 AM Revision f073606c (cdmlib): Fix titlecache issues for specimen table in data portal
- - Use Link class for every link
- Open all links in new window - 10:22 AM Revision 80d86f0e (cdmlib): smaller changes
- 10:22 AM Revision d3c53a58 (cdmlib): specimen import changes
- 10:22 AM Revision 7f3f7703 (cdmlib): Import specimen scans with StillImage type
- 10:22 AM Revision e5413aa3 (cdmlib): Remove unneccesary casts
- 10:22 AM Revision b6c2dd01 (cdmlib): ref #5448 Change abbreviation for unranked infraspecific rank
- 10:22 AM Revision 65053ce9 (cdmlib): fix #6037 per batch transction commit implemented for excel imports
- 10:22 AM Revision b2cdc597 (cdmlib): #5751 remove version numbers from cdmlib-db and some cleanup
- 10:22 AM Revision 90a4759c (cdmlib): #5751 finish redo r28780
- * use cdmlib-test in persistence for 2 antrun plugin and hibernate3 plugin
- 10:22 AM Revision 9d99878c (cdmlib): #5751 Partly redo r28780,
- * remove com.mchange from cdmlib-remote-webapp test scope
* use cdmlib-db in persistence for 2 further plugins - 10:22 AM Revision 89edc8d2 (cdmlib): #5751 further redo r28776, handle c3p0 via cdmlib-db in persistence
- 10:22 AM Revision ddfeb94f (cdmlib): #5751 further redo r28776, add cdmlib-db to persistence and remote-webapp
- 10:22 AM Revision 9b14d59d (cdmlib): #5751 Partly redo r28776, add c3p0 and mchange to cdmlib-db
- * r28776 had been reverted due to problems, try to redo those parts that
do not create problems - 10:22 AM Revision c81d69db (cdmlib): #3868 Add nothovar. test
- 10:22 AM Revision 3a8df162 (cdmlib): #6000 fix missing default color
- 10:22 AM Revision 53047c94 (cdmlib): #6000 Add static methods and uuids for new PAT terms
- 10:22 AM Revision b9cc4434 (cdmlib): #6000 Add some new PresenceAbsenceTerms from Cyprus and Cuba
- * Invasive changed to naturalized invasive (Cyprus, according to Pysek)
* naturalized invasive: presence questionab... - 10:22 AM Revision e561a9d4 (cdmlib): #6000 Use new CASUAL Method instead of derpeacted INTRODUCED_ADVENTITIOUS
- 10:22 AM Revision eafa3175 (cdmlib): #6000 Unify some PresenceAbsenceTerms (merge naturalized, rename adventitious -> casual, etc)
- 10:22 AM Revision 67cecfbb (cdmlib): Improve import report
- 10:22 AM Revision 15b4b2c0 (cdmlib): #5251 Fix Incorrect taxon source attachments
- 10:22 AM Revision adfafad3 (cdmlib): Improved import report
10/06/2016
- 05:02 PM Revision b5a13d3d (cdmlib): set the tests to ignore until the dna import is fixed again
- 05:02 PM Revision 29ee6f42 (cdmlib): fix merge problems
- 05:02 PM Revision 40ad1567 (cdmlib): fix merge problems
- 05:02 PM Revision 51fdd82a (cdmlib): fix merge problem
- 05:02 PM Revision a031824e (cdmlib): minor
- 05:02 PM Revision 180fa299 (cdmlib): minor
- 05:02 PM Revision e797de01 (cdmlib): missing changes in test
- 05:02 PM Revision 02d46959 (cdmlib): Avoid double dot at end of field unit titlecache
- 05:02 PM Revision 2bcd23da (cdmlib): Improve ABCD import report
- 05:02 PM Revision 187bc599 (cdmlib): missing changes in taxonDao
- 05:02 PM Revision cb77e468 (cdmlib): minor
- 05:02 PM Revision d9a28e0c (cdmlib): minor
- 05:02 PM Revision b41d771a (cdmlib): delete the excluded taxa parameter for UuidAndTitleCache of classificationService
- 05:01 PM Revision 702e2f6e (cdmlib): Revert "getUuidAndTitleCache of classificationservice does not need the excluded taxa"
- This reverts commit 1b553592f0055e0fec1ab3878236fa0ecad1bd17.
- 05:01 PM Revision 4d017d52 (cdmlib): hamonization of specimen import
- 05:01 PM Revision 1a8f15ad (cdmlib): first implementation for harmonization of import of specimen data
- 05:01 PM Revision ce2ea9e9 (cdmlib): sortindex updater utilities
- 05:01 PM Revision 4d622b5d (cdmlib): getUuidAndTitleCache of classificationservice does not need the excluded taxa
- 05:01 PM Revision 92835c7d (cdmlib): Allow whitespace after species epithet hybrid sign
- 05:01 PM Revision c013af56 (cdmlib): #3868 Handle notho ranks correctly while formatting
- 05:01 PM Revision 33543fe4 (cdmlib): Use title cache as fallback for specimen DTO for portal table
- 05:01 PM Revision 21ad7624 (cdmlib): #5981 Add abbreviation to Rank "Cultivar"
- 05:01 PM Revision d6fa3b9e (cdmlib): Use EN_DASH in E+M Condensed Distribution
- 05:01 PM Revision 551fdcf6 (cdmlib): #5777 Replace dash type in PAT symbols
- 05:01 PM Revision 5abd7a84 (cdmlib): #5777 Fix symbol reading for PresenceAbsenceTerm csv
- 05:01 PM Revision 9d567be5 (cdmlib): Add isInfraGenericButNotSpeciesGroup() method to Rank
- 05:01 PM Revision 17e6a14c (cdmlib): Pass pageSize and pageNumber to list method
- 05:01 PM Revision 5df1abe9 (cdmlib): small changes in CsvNameExport
- 05:01 PM Revision aaf5494f (cdmlib): It seems as if oclc number are no longer supported by the MobotOpenUrl api, test ignored
- 05:01 PM Revision adfc15ec (cdmlib): small change in CdvNameExport
- 04:58 PM Revision c047b4ab (cdmlib): minor
- 04:58 PM Revision faeea161 (cdmlib): ref #5499 add some markerType methods
- 04:44 PM Revision d7023fd8 (taxeditor): fix transient services
- 04:16 PM Revision 43539f49 (cdmlib): fix #6122 fix signature issue
- 03:23 PM bug #6121: NPE during portal web service requests that go through BaseController.doGetMethod()
- Be aware that the edaphobase uuids are not yet stable
- 01:21 PM bug #6121 (Worksforme): NPE during portal web service requests that go through BaseController.doGetMethod()
For example:
http://api.cybertaxonomy.org/edaphobase/portal/taxon/a032b2bc-84dd-44d5-a149-57a3e23da605/sec.json
...- 02:51 PM Revision 9c337ba9 (cdmlib): fix #6122 add titleCache service to remote
- 02:38 PM Revision d7043c98 (cdmlib): Use abstract controller for identifiable controllers
- 02:32 PM Revision a18426a8 (cdmlib): Create and rename Identifiable(List)Controllers
- 02:24 PM bug #6122 (Resolved): add titleCache service
- Applied in changeset commit:cdmlib|3dfc49ed20bbef8f573798864ced75424f892470.
- 02:21 PM bug #6122 (Closed): add titleCache service
- We need a service that returns only the titleCache for a given uuid.
By default it returns the titleCache as store... - 02:24 PM Revision 3dfc49ed (cdmlib): fix #6122 add titleCache service
- 01:24 PM Revision d74d7297 (cdmlib): fx #6119 Implement uuidAndTitleCache remote services
- 01:00 PM bug #6120: Cleanup uuidAndTitleCache methods
- Andreas Müller wrote:
> Please also check the code if you think it is reasonable
In TaxonBaseSelectionDialog it n... - 12:50 PM bug #6120: Cleanup uuidAndTitleCache methods
- Please also check the code if you think it is reasonable
- 12:37 PM bug #6120 (Resolved): Cleanup uuidAndTitleCache methods
- Applied in changeset cdmlib:commit:cdmlib|8d6c8a12abe82836eae03eab6a43b3cdea6d26df.
- 12:35 PM bug #6120 (Closed): Cleanup uuidAndTitleCache methods
- In TaxonService we have 2 methods getUuidAndTitleCacheTaxon and getUuidAndTitleCacheSynonym. They could be merged int...
- 12:48 PM Revision 53a122e4 (taxeditor): fix #6120 Cleanup uuidAndTitleCache methods
- 12:36 PM Revision 8d6c8a12 (cdmlib): fix #6120 Cleanup uuidAndTitleCache methods
- 11:51 AM bug #6119 (Closed): Implement uuidAndTitleCache remote services
10/05/2016
- 02:57 PM Revision 22738258 (taxeditor): minor
- 02:55 PM Revision cdd0428a (taxeditor): ref #6047: add the adapted files
- 02:52 PM Revision 79d06d0f (taxeditor): fix #6047: add the possibility to the termComboElement that the idInVoc is used as label
- 02:27 PM bug #5854 (Worksforme): Deleting terms has no effect
- the deletion already works and the lists of terms are refereshed correctly.
- 02:17 PM bug #6056 (Closed): Checklist Editor does not close session
- 01:18 PM task #6118 (In Progress): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
- 01:18 PM task #6118 (Closed): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
- [spring-security-oauth](http://projects.spring.io/spring-security-oauth) & [Spring-Cloud-Security](http://cloud.sprin...
- 12:54 PM task #2055: Improve Article creation for nomenclatural references
- needs time for discussion and consistency check with Berlin Model situation (see duplicating ticket)
- 12:40 PM bug #5211 (Worksforme): Error when creating new taxon /problem with sortindex in taxon tree
- Probably fixed with better handling for null values in merge.
- 12:19 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
- Or even better solution, use DTOs on server side.
- 12:11 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
- Maybe the problem is the label provider which initializes lazy objects. Which thread does it use?
- 11:38 AM bug #5965 (In Progress): Check if authentication works correctly after datasource change
- 11:28 AM feature request #5972: Prevent user from unwanted author and reference updates
- Decision: for id > 0 implement check for further references and inform the user in red about these references if they...
10/04/2016
- 02:26 PM Revision c5764380 (cdmlib): Minor cleanup
- 12:55 PM bug #6115: protect cdm content by drupal permission
- Hi Andreas,
the review of this ticket need intensive testing. I suggest we use one of the published portals on the... - 12:45 PM bug #6115 (Resolved): protect cdm content by drupal permission
- Applied in changeset cdm-dataportal:commit:cdm-dataportal|c6fe437bfe330b2aa1cc96d32d956edfc14f8b19.
- 12:50 PM bug #6062 (Closed): NPE in RefencingObjects for TaxonNameDescription
- Though #5616 is not yet fully fixed I think we can close this ticket now.
- 12:45 PM feature request #5616: Add the"Open in..." menu to taxon search
- The first issue seems to be fixed.
Handling of orphaned taxa still does not work (neither the icon nor the right c... - 12:44 PM Revision fd5d8378 (cdm-dataportal): removing unsed permissions defined in cdm_api module
- 12:44 PM Revision b5ff8a25 (cdm-dataportal): removing unsed permissions defined in extlinks module
- 12:44 PM Revision c6fe437b (cdm-dataportal): fix #6115 protecting all cdm content with new permission
- 12:44 PM Revision 8385a9f2 (cdm-dataportal): removing unused permission
- 12:35 PM Revision 6a0ca989 (cdm-dataportal): fix #6114 ref #4379 avoiding empty citation feature block with only footnote keys - bug fix
- 12:21 PM feature request #5969: Implement CdmPreference reading for database preferences
- I added a remark that that the preference is stored in db and a check whether the editor is already connected to a da...
- 11:28 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences
- Katja Luther wrote:
> In Revision 4625a011 a check for the existence of the preference in DB is added.
This does ... - 12:19 PM Revision 68f310fd (taxeditor): ref #5969: add remark that the nomenclatural code preference is stored in db
- 12:11 PM Revision 2a7c9630 (taxeditor): ref #5969: check for db connection before ty to read the preferred nomenclatural code
- 11:53 AM bug #5967 (Feedback): Adapt default update site to production update site.
- If no entry exists in eu.etaxonomy.taxeditor.store.prefs everything works as expected as far as I can see. Meaning, t...
- 11:17 AM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget
- Seems to work well. Related issue about layout of filter in new ticket: #6116
- 11:12 AM bug #6116 (New): Advanced Search area filter layout needs to be improved
- The new resizable version of the area filter looks much better already.
But 2 issues need to be solved.
1) If >...
09/30/2016
- 09:09 PM Revision 8f3575e1 (cdmlib): add missing changes
- 04:34 PM Revision 1600af50 (cdmlib): minor
- 04:09 PM Revision 090cb34e (cdmlib): specimen import/search changes
09/29/2016
- 06:40 PM bug #6115 (Closed): protect cdm content by drupal permission
- A couple of portals are currently in maintenance mode because the taxa and names must not be disclosed to the public....
- 06:09 PM bug #6114 (Resolved): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
- Applied in changeset cdm-dataportal:commit:cdm-dataportal|7a751db42d606dc2662560f6a7e19bab6896fe8b.
- 05:24 PM bug #6114 (Closed): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
- For details see #4379
This currently affects the FaunaEuropaea project! - 06:09 PM Revision 7a751db4 (cdm-dataportal): fix #6114 ref #4379 avoiding empty citation feature block with only footnote keys
- 04:30 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
- Conclusion of the discussion:
* The current functionality can not simply be relabeled
* The current functionality... - 02:07 PM bug #2957: running maven site:site for Taxonomic Editor fails
- This is broken since **4 Years**. Who can take care for this ticket?
- 11:01 AM feature request #6113 (Closed): webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML
KML 2.2 : https://portal.ogc.org/files/?artifact_id=27810
potentially helpful libraries:
* https://github.com...- 10:57 AM bug #3226: openlayers map google baselayers: api keys rejected
- this is easy to fix
09/28/2016
09/27/2016
- 01:26 PM bug #6111 (Closed): invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list()
- The Specimens Table in the chichorieae portal is no longer working due to a bug in the `CdmEntityDaoBase.list()` meth...
- 12:06 PM Revision 1069d3f0 (cdm-dataportal): HOTFIX for 4.3.0
- 12:05 PM Revision b3b63fc8 (cdm-dataportal): HOTFIX for 4.3.0
- 08:55 AM Revision 0057eb30 (cdmlib): delete system.out.println from test
Also available in: Atom