Activity

From 09/19/2016 to 10/18/2016

10/18/2016

06:40 PM bug #6129 (Resolved): After creating a new Reference in selection dialog, it could not be found in the selection dialog: Applied in changeset commit:taxeditor|5a8a1f1453f51d9a99421a6d137f707c266a08b7. Katja Luther
06:40 PM feature request #5891 (Resolved): Taxon appended phrase should not allow empty string: Applied in changeset commit:taxeditor|ceaa3fed461d7c19d3fc124917b4bbfeb35d3f36. Katja Luther
06:36 PM feature request #5634: Excluded note for excluded taxa /taxon nodes: Applied in changeset commit:cdmlib|1e55f5c2544860c52cea161e4edcff5ef2e1bbfa. Andreas Müller
05:45 PM feature request #5634 (Resolved): Excluded note for excluded taxa /taxon nodes: Andreas Müller
06:36 PM feature request #5974 (Resolved): Remove synonym relationships: Applied in changeset commit:cdmlib|d7fa3e131995dd5543514aa3afd71fdd31b59bf5. Andreas Müller
06:36 PM feature request #5952: Second cache field for specimen (identityCache): Applied in changeset commit:cdmlib|7e03e21e1ae317b2fc610adf44deabb82083a083. Andreas Müller
10:28 AM bug #6099: Duration of save is increasing: to reduce the saving time we removed the cascading to the child taxa.
please test the editor, if everything works as... Katja Luther
09:20 AM bug #6120 (Closed): Cleanup uuidAndTitleCache methods: tested all selection dialogs where it is used and it seems to work. Katja Luther

10/17/2016

06:18 PM bug #6131 (Closed): Vaadin DistributionEditor TODOS: - ~~ok/cancel button in settings window -> same min width~~
- ~~if only 1 classification -> autoselect~~
- ~~NPE wh... Patrick Plitzner
05:32 PM bug #6130: Areafilter widget broken: Typing in the text field is no longer filtering the selection of areas Andreas Kohlbecker
05:30 PM bug #6130 (Closed): Areafilter widget broken: This is a regression which might have been introduced while solving #6087 Andreas Kohlbecker
01:13 PM bug #6129: After creating a new Reference in selection dialog, it could not be found in the selection dialog: This is because the search pattern is created out of the abbrevTitleCache concatinated with the authorstring.
Removi... Katja Luther
01:10 PM bug #6129 (Closed): After creating a new Reference in selection dialog, it could not be found in the selection dialog: mail von Norbert:
ich möchte sicherheitshalber nochmal an meine Bugmeldung vom 28.7.16 erinnern, welche vielleicht... Katja Luther

10/16/2016

09:30 PM feature request #6128 (Closed): Include authorship in taxon search web service: /portal/taxon/find?doTaxaByCommonNames=1&doMisappliedNames=1&doSynonyms=1&doTaxa=1&pageNumber=0&pageSize=10&query={qu... Andreas Müller

10/06/2016

03:23 PM bug #6121: NPE during portal web service requests that go through BaseController.doGetMethod(): Be aware that the edaphobase uuids are not yet stable Andreas Müller
01:21 PM bug #6121 (Worksforme): NPE during portal web service requests that go through BaseController.doGetMethod(): For example:
http://api.cybertaxonomy.org/edaphobase/portal/taxon/a032b2bc-84dd-44d5-a149-57a3e23da605/sec.json
... Andreas Kohlbecker
02:24 PM bug #6122 (Resolved): add titleCache service: Applied in changeset commit:cdmlib|3dfc49ed20bbef8f573798864ced75424f892470. Andreas Müller
02:21 PM bug #6122 (Closed): add titleCache service: We need a service that returns only the titleCache for a given uuid.
By default it returns the titleCache as store... Andreas Müller
01:00 PM bug #6120: Cleanup uuidAndTitleCache methods: Andreas Müller wrote:
> Please also check the code if you think it is reasonable
In TaxonBaseSelectionDialog it n... Katja Luther
12:50 PM bug #6120: Cleanup uuidAndTitleCache methods: Please also check the code if you think it is reasonable Andreas Müller
12:37 PM bug #6120 (Resolved): Cleanup uuidAndTitleCache methods: Applied in changeset cdmlib:commit:cdmlib|8d6c8a12abe82836eae03eab6a43b3cdea6d26df. Andreas Müller
12:35 PM bug #6120 (Closed): Cleanup uuidAndTitleCache methods: In TaxonService we have 2 methods getUuidAndTitleCacheTaxon and getUuidAndTitleCacheSynonym. They could be merged int... Andreas Müller
11:51 AM bug #6119 (Closed): Implement uuidAndTitleCache remote services: Andreas Müller

10/05/2016

02:27 PM bug #5854 (Worksforme): Deleting terms has no effect: the deletion already works and the lists of terms are refereshed correctly. Katja Luther
02:17 PM bug #6056 (Closed): Checklist Editor does not close session: Katja Luther
01:18 PM task #6118 (In Progress): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2: Andreas Kohlbecker
01:18 PM task #6118 (Closed): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2: [spring-security-oauth](http://projects.spring.io/spring-security-oauth) & [Spring-Cloud-Security](http://cloud.sprin... Andreas Kohlbecker
12:54 PM task #2055: Improve Article creation for nomenclatural references: needs time for discussion and consistency check with Berlin Model situation (see duplicating ticket) Andreas Müller
12:40 PM bug #5211 (Worksforme): Error when creating new taxon /problem with sortindex in taxon tree: Probably fixed with better handling for null values in merge. Andreas Müller
12:19 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects: Or even better solution, use DTOs on server side. Andreas Müller
12:11 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects: Maybe the problem is the label provider which initializes lazy objects. Which thread does it use? Andreas Müller
11:38 AM bug #5965 (In Progress): Check if authentication works correctly after datasource change: Andreas Müller
11:28 AM feature request #5972: Prevent user from unwanted author and reference updates: Decision: for id > 0 implement check for further references and inform the user in red about these references if they... Andreas Müller

10/04/2016

12:55 PM bug #6115: protect cdm content by drupal permission: Hi Andreas,
the review of this ticket need intensive testing. I suggest we use one of the published portals on the... Andreas Kohlbecker
12:45 PM bug #6115 (Resolved): protect cdm content by drupal permission: Applied in changeset cdm-dataportal:commit:cdm-dataportal|c6fe437bfe330b2aa1cc96d32d956edfc14f8b19. Andreas Kohlbecker
12:50 PM bug #6062 (Closed): NPE in RefencingObjects for TaxonNameDescription: Though #5616 is not yet fully fixed I think we can close this ticket now. Andreas Müller
12:45 PM feature request #5616: Add the"Open in..." menu to taxon search: The first issue seems to be fixed.
Handling of orphaned taxa still does not work (neither the icon nor the right c... Andreas Müller
12:21 PM feature request #5969: Implement CdmPreference reading for database preferences: I added a remark that that the preference is stored in db and a check whether the editor is already connected to a da... Katja Luther
11:28 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences: Katja Luther wrote:
> In Revision 4625a011 a check for the existence of the preference in DB is added.
This does ... Andreas Müller
11:53 AM bug #5967 (Feedback): Adapt default update site to production update site.: If no entry exists in eu.etaxonomy.taxeditor.store.prefs everything works as expected as far as I can see. Meaning, t... Andreas Müller
11:17 AM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget: Seems to work well. Related issue about layout of filter in new ticket: #6116 Andreas Müller
11:12 AM bug #6116 (New): Advanced Search area filter layout needs to be improved: The new resizable version of the area filter looks much better already.
But 2 issues need to be solved.
1) If >... Andreas Müller

09/29/2016

06:40 PM bug #6115 (Closed): protect cdm content by drupal permission: A couple of portals are currently in maintenance mode because the taxa and names must not be disclosed to the public.... Andreas Kohlbecker
06:09 PM bug #6114 (Resolved): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled: Applied in changeset cdm-dataportal:commit:cdm-dataportal|7a751db42d606dc2662560f6a7e19bab6896fe8b. Andreas Kohlbecker
05:24 PM bug #6114 (Closed): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled: For details see #4379
This currently affects the FaunaEuropaea project! Andreas Kohlbecker
04:30 PM feature request #6041: Change the label of "Set as basionym of homotypical group": Conclusion of the discussion:
* The current functionality can not simply be relabeled
* The current functionality... Andreas Müller
02:07 PM bug #2957: running maven site:site for Taxonomic Editor fails: This is broken since **4 Years**. Who can take care for this ticket? Andreas Kohlbecker
11:01 AM feature request #6113 (Closed): webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML: KML 2.2 : https://portal.ogc.org/files/?artifact_id=27810
potentially helpful libraries:
* https://github.com... Andreas Kohlbecker
10:57 AM bug #3226: openlayers map google baselayers: api keys rejected: this is easy to fix Andreas Kohlbecker

09/27/2016

01:26 PM bug #6111 (Closed): invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list(): The Specimens Table in the chichorieae portal is no longer working due to a bug in the `CdmEntityDaoBase.list()` meth... Andreas Kohlbecker

09/26/2016

05:25 PM feature request #6110 (Closed): Use https for map service calls when the portal is access via https: Andreas Kohlbecker
03:17 PM feature request #6076: Specimen biocase search should work on observations: The specimen search works only for preserved specimen, but should return all kind of specimen.
Therefore the filte... Katja Luther
01:33 PM feature request #6076 (In Progress): Specimen biocase search should work on observations: Please add some more information what it is all about. Andreas Müller
02:38 PM feature request #5969 (Resolved): Implement CdmPreference reading for database preferences: In Revision 4625a011 a check for the existence of the preference in DB is added. Katja Luther
01:48 PM bug #6051: Add toggle button for simple details view for names: try to synchronize with same issue in media view Andreas Müller
01:13 PM bug #4348: Remove InputDialog in creating new bulk editor entities where not needed: Explain solution with wizards and create new tickets for all required wizards. Andreas Müller
12:18 PM feature request #5185 (Worksforme): drag & drop for descriptions and descriptionElements: Drag & drop works fine. But after creating a new Description you have to save before move a descriptionelement to the... Katja Luther
10:15 AM feature request #5185: drag & drop for descriptions and descriptionElements: Is this still open. Adapt target version if closed. Andreas Müller
12:17 PM bug #6109 (Worksforme): Drag & Drop after creating a new description fails: When creating a new description and try to move a description element to this new description without saving throws t... Katja Luther
10:36 AM bug #6042: Campanula portal TODOS: Please create sub tasks and add mails as comments Andreas Müller
10:24 AM bug #6077 (Resolved): Import of gathering images: Andreas Müller
09:39 AM bug #6088: New reproducable multiple representations exception for name relationships: I think I could find when this exception occurs: Always when using a name already opened in bulk editor to create the... Katja Luther

09/23/2016

03:20 PM feature request #6066 (Closed): Edaphobase DTO for getChildrenTaxaOfId: Andreas Müller
02:00 PM feature request #6066 (Resolved): Edaphobase DTO for getChildrenTaxaOfId: Andreas Müller
02:00 PM feature request #6066: Edaphobase DTO for getChildrenTaxaOfId: New version in classification controller:
http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5d... Andreas Müller
03:16 PM bug #6073 (Closed): Fix groupByHigherTaxon webservice: Andreas Müller
02:52 PM bug #6071 (In Progress): Handle Taxonomische Großgruppen correctly in Edaphobase: Offen:
~~Import~~
Evtl. Offen:
... ~~und danach soll eine Liste von Taxa gruppiert werden können~~ Andreas Müller
02:41 PM bug #6072: Implement getTaxonomicGroups for Edaphobase: Open issue: handle includeEntity correctly Andreas Müller
02:40 PM bug #6072: Implement getTaxonomicGroups for Edaphobase: This has been solved by implementing findByMarker similar to findByIdentifier.
Example:
http://test.e-taxonomy... Andreas Müller
12:16 PM feature request #6065 (Resolved): Edaphobase DTO for getTaxonById: Still to test: fehlerhafte UUIDs sollten zu 404 (Reseource not found) Fehler führen. Andreas Müller
12:14 PM feature request #6065: Edaphobase DTO for getTaxonById: Examples:
Taxon with child and synonym:
http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5... Andreas Müller

09/22/2016

11:27 AM bug #6108 (New): Too many columns exception when selecting TDWG areas in distribution editor: ~~~
Sep 22, 2016 11:26:11 AM com.vaadin.data.util.sqlcontainer.SQLContainer getPropertyIds
Warnung: Failed to fetch... Patrick Plitzner

09/21/2016

03:19 PM task #6107 (New): Establish performance monitoring: The suggestions given in https://www.infoq.com/articles/Diagnose-Microservice-Performance-Anti-Patterns could help us... Andreas Kohlbecker
01:07 PM feature request #5890: Implement auto-suggest for data portal: Added "Experimental" to settings description
Should we move this feature to 4.4? Patrick Plitzner
01:03 PM feature request #5969: Implement CdmPreference reading for database preferences: If no datasource is selected an NPE occurs:
~~~
login :
editor version : 4.3.0.201609201350
server : /
sche... Andreas Müller
12:05 PM feature request #5969: Implement CdmPreference reading for database preferences: The implementation in the local preferences UI works well now and I think we can close the ticket.
But maybe we ca... Andreas Müller
12:04 PM bug #6106 (Closed): [Discuss] Handle rights and roles for CdmPreferences: Currently every user can change CdmPreferences.
Do we need a new role "CdmPreferenceAdmin" or should the right be ... Andreas Müller
11:45 AM bug #6086 (Closed): Percentage value in ProgressMonitor accuratly rounded: This seems to be fully solved. Andreas Kohlbecker
11:30 AM bug #6105 (Closed): Make CdmPreferences editable in separate view: We started editing CdmPreferences in #5969. This is experimental as the UI mixes local preferences with CdmPreference... Andreas Müller
11:30 AM feature request #6037 (Rejected): Allow intermediate commits in Excel import: This would be nice to have but did not work after the initial implementation, solving the errors seems not worth it. ... Andreas Kohlbecker
09:39 AM bug #6061 (Closed): Add titlecache to nom author search: Katja Luther
09:37 AM bug #6061 (Resolved): Add titlecache to nom author search: Applied in changeset taxeditor:commit:taxeditor|28027bed8148feb8c9a3cfdbd7e203e62ad51733. Katja Luther
09:32 AM bug #6061: Add titlecache to nom author search: Andreas Müller wrote:
> With the above example Aaaa/Bbbb I get the following exception when exactly searching for "*... Katja Luther

09/20/2016

11:46 PM bug #6019 (Closed): Link to changeset does not work yet: this works now in the production version Andreas Kohlbecker
11:44 PM task #6006 (Closed): setup automatic refresh of repositories in Redmine: No problems so far, the refresh works for all configured repos. Andreas Kohlbecker
11:41 PM bug #6104 (New): install gitolite: The git repos need an access control and a general management layer.
Gitolite seems to be the best choice: http://... Andreas Kohlbecker
06:41 PM bug #6100: Name parser problems: Hallo Andreas,
korrekter Sonderfall des Brummitt & Powell Standard:
Da R.Br. 3x vorhanden ist, ist der erste R.... Andreas Kohlbecker
12:55 PM bug #6100 (In Progress): Name parser problems: When running the IAPT import (#6026) a lot of names can not be parsed.
For a better overview I split the affected... Andreas Kohlbecker
06:36 PM task #6020 (Feedback): Consider replacing custom field 'keywords' by redmine_tags: could you do the xcheck once again? Andreas Kohlbecker
06:35 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags: This is fixed now. Andreas Kohlbecker
05:53 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags: Da scheint es leider noch Probleme zu geben.
2 Beispiele: http://130.133.70.38/redmine/issues/1420 sollte Tags Fa... Andreas Kohlbecker
05:50 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`: problem solved in awk script
please test again. Andreas Kohlbecker
05:18 PM bug #6087: Top level items not sorted in tree of advanced search areaFilter widget: Please test again. All remaining issues are solved. Andreas Kohlbecker
05:17 PM bug #6087 (Resolved): Top level items not sorted in tree of advanced search areaFilter widget: Applied in changeset commit:cdm-dataportal|c079337e19b7aa2b7e23a64a78da5085b92029ee. Andreas Kohlbecker
04:59 PM feature request #5616: Add the"Open in..." menu to taxon search: Andreas Müller wrote:
> Better now but still some issues:
>
> * For pure names (not related to taxa) the right cl... Patrick Plitzner
04:29 PM feature request #5616: Add the"Open in..." menu to taxon search: Better now but still some issues:
* For pure names (not related to taxa) the right click menu does not show up at ... Andreas Müller
01:45 PM feature request #5616: Add the"Open in..." menu to taxon search: Fixed in taxeditor:commit:taxeditor|92634d22a080f6de8af639dae12fe771cda64ceb Patrick Plitzner
04:00 PM feature request #6103 (New): Refactor name editor to be based on taxon nodes: Currently the TaxonEditorInput and the name editor are based on taxa. The editor input already stores the taxon node ... Patrick Plitzner
03:45 PM discussion #1410: DISCUSS - CDM product names: CDM Data Portal:
In the documentation, I just use data portal to refer to the connected Drupal instance as a whole (... Walter Berendsohn
03:41 PM discussion #1410: DISCUSS - CDM product names: Taxonomic Editor:
For the Documentation, I had changed the designation "EDITor" to "TaxEditor. However, in the user ... Walter Berendsohn
02:49 PM bug #6101 (Resolved): NPE when having multiple lanugage support disabled: Applied in changeset taxeditor:commit:taxeditor|db09bbf4cace84076e5fadb241440655b734827f. Katja Luther
02:11 PM bug #6101 (Closed): NPE when having multiple lanugage support disabled: This happens when doing a right-click in the feature term editor
Some GUI elements are not initialised when multi ... Patrick Plitzner
02:30 PM feature request #6102 (New): advanced taxon search offers filter on distribution status: successor of #4497
The area filter in the advanced search needs to be complemented with a filter for the distribut... Andreas Kohlbecker
02:26 PM feature request #6041: Change the label of "Set as basionym of homotypical group": Katja Luther wrote:
> Andreas Müller wrote:
> > But first revert the already existing changes!!!
>
> It is alrea... Andreas Müller
02:23 PM feature request #6041: Change the label of "Set as basionym of homotypical group": Andreas Müller wrote:
> But first revert the already existing changes!!!
It is already reverted see Revision 6e57... Katja Luther
02:00 PM feature request #6041: Change the label of "Set as basionym of homotypical group": But first revert the already existing changes!!! Andreas Müller
10:24 AM feature request #6041: Change the label of "Set as basionym of homotypical group": This needs to be discussed in User Meeting, move it to Release 4.4 and decide then if we change it or not. Katja Luther
02:24 PM bug #6061 (Feedback): Add titlecache to nom author search: With the above example Aaaa/Bbbb I get the following exception when exactly searching for "*B".
Entering "*Bb" works... Andreas Müller
01:48 PM bug #6084 (Closed): NPE when opening the checklist editor with no areas selected in preferences: works fine Patrick Plitzner
10:50 AM feature request #6066 (Feedback): Edaphobase DTO for getChildrenTaxaOfId: Andreas Müller
10:49 AM feature request #6066: Edaphobase DTO for getChildrenTaxaOfId: Getestet unter http://test.e-taxonomy.eu/cdmserver/edaphobase_test/doc/?group=Generic%20REST%20API#!/taxon-node-contr... Andreas Müller
10:32 AM bug #5967: Adapt default update site to production update site.: This ticket is difficult to review before the release so we will do the review afterwards. Andreas Müller
10:13 AM bug #6082: Local managed server in Taxeditor fails during start: To be honest I am not sure which of the 3 changes was the crucial one and if they are all required.
I only remembe... Andreas Müller
10:05 AM bug #6082 (Closed): Local managed server in Taxeditor fails during start: Yes this change actually fixes the problem. Howver, it is strange that it is necessary to explicitly name all jars in... Andreas Kohlbecker
10:11 AM bug #6099: Duration of save is increasing: the time consuming call is CdmStore.getService(ITaxonNodeService.class).merge(taxonNode, true);
Katja Luther
10:09 AM bug #6099 (Closed): Duration of save is increasing: Hallo Andreas,
also das Speicherns dauert nach Neuanlegen einer Common names bei Hieracium immer noch unerträglich... Katja Luther

09/19/2016

10:14 PM bug #6082 (Resolved): Local managed server in Taxeditor fails during start: commit:taxeditor|ccf3875f seems to fix the problem.
Please check. Andreas Müller
05:16 PM bug #6082 (Feedback): Local managed server in Taxeditor fails during start: The changes committed before did apparently not solve the problem.
The latest build made by jenkins still was having... Andreas Kohlbecker
03:45 PM bug #6082 (Resolved): Local managed server in Taxeditor fails during start: Applied in changeset taxeditor:commit:taxeditor|09ab8026ce80a7f76ad3bc250f303aee986c3dab. Andreas Kohlbecker
03:44 PM bug #6082: Local managed server in Taxeditor fails during start: this seems to be caused by incomplete entries in the `eu.etaxonomy.taxeditor.webapp/build.properties` Andreas Kohlbecker
03:31 PM bug #6082: Local managed server in Taxeditor fails during start: This does not happen from within the IDE and the eu.etaxonomy.taxeditor.webapp_4.3.0.201609190837.jar of the lastets ... Andreas Kohlbecker
02:03 PM bug #6098 (New): Improve session handling for TaxonNavigator and newTaxonNodeWizard: related to #5607.
It looks like the reason is that the assistant is using the navigator session and the navigator... Katja Luther
01:33 PM bug #6087 (Feedback): Top level items not sorted in tree of advanced search areaFilter widget: Andreas Müller
01:33 PM bug #6087: Top level items not sorted in tree of advanced search areaFilter widget: The ordering is now alphabetic but not according to the ordering in the vocabular as written in the description (espe... Andreas Müller
01:12 PM bug #6061 (Resolved): Add titlecache to nom author search: Applied in changeset cdmlib:commit:cdmlib|40dfdbc5479f32292017fadeca45b8424dda4896. Katja Luther
01:10 PM bug #6061: Add titlecache to nom author search: Andreas Müller wrote:
> Deduplication of equals caches looks good now.
>
> Search on titleCache does not yet work... Katja Luther
01:06 PM bug #6061: Add titlecache to nom author search: Deduplication of equals caches looks good now.
Search on titleCache does not yet work. E.g. create a Person with n... Andreas Müller
01:08 PM bug #6056 (Resolved): Checklist Editor does not close session: Applied in changeset taxeditor:commit:taxeditor|bfc8d3b4b4853357b40551eca7a283ce68bbe865. Katja Luther

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