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From 09/14/2016 to 10/13/2016

10/13/2016

11:54 PM Revision 60dd84cb (cdmlib): fix #5952 Add identityCache
Andreas Müller
11:53 PM Revision d0353186 (cdmlib): cleanup
Andreas Müller
11:46 PM bug #6127 (Closed): NPE in NameCatalogue Controller on name_catalogue/taxon
fixed Andreas Müller
05:49 PM bug #6127: NPE in NameCatalogue Controller on name_catalogue/taxon
For the review please click this:
http://test.e-taxonomy.eu/cdmserver/cichorieae/name_catalogue/taxon?classificat...
Andreas Kohlbecker
05:46 PM bug #6127 (Resolved): NPE in NameCatalogue Controller on name_catalogue/taxon
Applied in changeset cdmlib:commit:cdmlib|3fa85b454e525c42baf068b4f7cf9ecaad757fb1. Andreas Kohlbecker
05:41 PM bug #6127 (Closed): NPE in NameCatalogue Controller on name_catalogue/taxon

http://api.cybertaxonomy.org:80/cichorieae/name_catalogue/taxon?classification=76b17487-3df4-41c7-8043-2bbb266eac...
Andreas Kohlbecker
06:26 PM Revision 75f20bed (cdm-vaadin): ref #5458 Center detail window
Patrick Plitzner
06:26 PM Revision cb4029b0 (cdm-vaadin): ref #5458 Redesign navigation architecture
- after login the user will be redirected directly to the table view
and the settings dialog will be opened
-made se...
Patrick Plitzner
06:26 PM Revision 092fd728 (cdm-vaadin): ref #5458 Update selected distribution status after selection
Patrick Plitzner
06:26 PM Revision 3f6f86d5 (cdm-vaadin): ref #5458 Replace term dropdown with popup window for performance
Patrick Plitzner
06:26 PM Revision fda2cb06 (cdm-vaadin): ref #5458 Add toggle button for abbreviations to settings menu
- extract constants for session attributes Patrick Plitzner
06:26 PM Revision 70ea5d03 (cdm-vaadin): Trim Code + add serial version uid
Patrick Plitzner
05:46 PM Revision 3fa85b45 (cdmlib): fix #6127 handling case the taxon has no LSID, avoid NPE in NameCatalogeController
Andreas Kohlbecker
05:19 PM Revision 8ebd16d6 (cdm-dataportal): fixing selenium support for chrome browser
Andreas Kohlbecker
05:00 PM feature request #5952 (Resolved): Second cache field for specimen (identityCache)
Andreas Müller
04:58 PM feature request #5952: Second cache field for specimen (identityCache)
255 characters should be enough as it should be a short cache only holding most important identifiers Andreas Müller
04:59 PM Revision 7e03e21e (cdmlib): fix #5952 Add fieldNumberCache
Andreas Müller
04:34 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
Looks good. I tested it with the following query and could not find any differences between keywords and tags:
htt...
Andreas Müller
04:24 PM feature request #5981 (Resolved): Add abbreviation to Rank "Cultivar"
Andreas Müller
04:23 PM Revision bcdf42bc (cdmlib): fix #5981 Add abbreviation to Rank "Cultivar"
Andreas Müller
04:09 PM Revision f6db28c4 (cdm-vaadin): cleanup
Andreas Müller
03:45 PM bug #3658 (Resolved): Update Nomenclatural code for datasources
Andreas Müller
03:44 PM feature request #5974 (In Progress): Remove synonym relationships
Andreas Müller
03:34 PM bug #4461 (Resolved): Ordering in datasources view fails
Andreas Müller
03:23 PM bug #5676 (Resolved): Sensu does not show up if no author exists for secundum reference
Applied in changeset commit:cdm-dataportal|763b610cafda73d41d185ddb4e44f8baa701c0a2. Andreas Kohlbecker
03:23 PM Revision 763b610c (cdm-dataportal): fix #5676 displaying the reference titleCache as sensu if authors are missind; also solving other problems
Andreas Kohlbecker
02:46 PM Revision 5d177a2e (taxeditor): minor
Katja Luther
02:28 PM Revision eff603b4 (taxeditor): remove experimental code
Katja Luther
01:42 PM Revision 030ad7c6 (cdmlib-apps): ref #5499 latest changes to Edaphobase import
Andreas Müller
01:41 PM Revision 3ef2e1bd (cdmlib-apps): ref #5974 Remove synonym relationships (not finished yet)
Andreas Müller
01:30 PM Revision a4947270 (cdmlib-apps): ref #3658 remove nomenclaturalCode
Andreas Müller
01:21 PM feature request #6126 (New): Make the label for nomenclatural status configurable
add the possibility to configure whether the labels of the drop down menu are the title or the abbrev of the nomencla... Katja Luther
01:15 PM Revision fc545014 (taxeditor): minor
Katja Luther
01:15 PM bug #5692 (Resolved): Delete a person within the bulk editor deletes the person even if not saved
Applied in changeset taxeditor:commit:taxeditor|7dce04a4ef06e30769a711c8b6aceb11b2137c31. Katja Luther
01:07 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
I adapted the deletion to the merging and added the delete configurator to the lineAnnotation. Now the objects are an... Katja Luther
01:15 PM Revision 7dce04a4 (taxeditor): fix #5692: adapt delete algorithm to annotatedLineEditor mechanisms
Katja Luther
01:14 PM Revision c0248cde (cdmlib): ref #3658 remove nomenclaturalCode from all datasource related classes
* and rename NomenclaturalCodeAwareDataSource Andreas Müller
12:17 PM task #5083: Alternative image viewer for dataportal
The Universalviewer has now commonly accepted, even if there are concerns, but it is so far the best solution we have... Andreas Kohlbecker
12:06 PM task #5083: Alternative image viewer for dataportal
*Ralf Hand wrote:*
Hallo Andreas,

danke für den Link. Wir als sehr fotoorientiertes Projekt sind nicht uneinge...
Andreas Kohlbecker
11:57 AM Revision 4b36c12a (cdmlib): ref #3658 Update nomenclatural code as CdmPreference (most probable value)
Andreas Müller
11:52 AM Revision 5dc46163 (cdmlib): cleanup
Andreas Müller
11:52 AM Revision cb96157e (cdmlib): ref #3658 Update nomenclatural code as CdmPreference (most probable value)
Andreas Müller
11:42 AM task #5943 (Closed): back to search button/link should go into a drupal block
Enablement of the new block is done automatically when running the module update script, so no further action needs t... Andreas Kohlbecker
11:16 AM task #5943 (Resolved): back to search button/link should go into a drupal block
Applied in changeset commit:cdm-dataportal|beb914ef020af7daeaf97ce1f75d7bcb098dc9eb. Andreas Kohlbecker
11:39 AM Revision d27e2b08 (cdm-dataportal): ref #5943 update script improvements
Andreas Kohlbecker
11:35 AM Revision fdb0f1fc (cdm-dataportal): ref #5943 update script improvements
Andreas Kohlbecker
11:16 AM Revision beb914ef (cdm-dataportal): fix #5943 back to search button/link moved to drupal block
Andreas Kohlbecker
11:09 AM Revision 152fcd76 (cdmlib): ref #5974 Replace synonym relationship update scripts (untested)
Andreas Müller
11:09 AM Revision 066c9dde (cdmlib): clean up and java doc
Andreas Müller
11:07 AM Revision 741a4c05 (cdmlib): #3547 remove not needed dataset.dtd from persistence
Andreas Müller
09:58 AM Revision fbeefcaf (cdmlib): ref #5974 Replace synonymRelationshipType by SynonymType and replace some other occurrences of synonym relationship
Andreas Müller

10/12/2016

09:00 PM Revision f476ff86 (cdmlib): ref #5974 Remove synonym relationship first compiling implementation in cdmlib
Andreas Müller
03:12 PM Revision 88505483 (taxeditor): removing p6spy dependencies
Andreas Kohlbecker
03:04 PM Revision 7b6ed357 (cdmlib): IDE launcher config cdmlib-remote-webapp-unit-test
Andreas Kohlbecker
03:02 PM Revision df435453 (cdmlib): relaxing web service access restrictions
Andreas Kohlbecker
01:35 PM Revision ac7fcb04 (taxeditor): minor
Andreas Müller
12:13 PM Revision 558d5bd1 (cdm-vaadin): ref #5458 extract constants for session attributes
Patrick Plitzner
12:05 PM Revision 5f031b4f (cdm-vaadin): ref #5458 Error handling for abbreviated labels
Patrick Plitzner

10/11/2016

06:32 PM Revision 19e3a309 (taxeditor): removing generated file
Andreas Kohlbecker
06:29 PM Revision ecac085c (taxeditor): Revert "ref #6118 catching exception during checkConnection"
This reverts commit bb7b4f601b49f1ba29f149405246f120b4c46a9a. Andreas Kohlbecker
06:13 PM Revision 2cb5f120 (taxeditor): ref #6124 fixing Bundle-Version
Andreas Kohlbecker
06:09 PM task #6125 (New): Implement tests for OAuth2 in cdmlib-remote
The tests in spring-projects/spring-security-oauth samples/oauth2/sparklr project are a good start! Andreas Kohlbecker
04:53 PM Revision 785fc5d7 (cdm-vaadin): ref #5458 Add abbreviated labels to distribution table
Patrick Plitzner
04:46 PM Revision ca35dbce (taxeditor): OOPS!
Andreas Kohlbecker
04:44 PM Revision 868c5623 (taxeditor): fixing project version in pom.xml which was not updated after the relase
Andreas Kohlbecker
04:19 PM Revision bb7b4f60 (taxeditor): ref #6118 catching exception during checkConnection
Andreas Kohlbecker
03:35 PM bug #5948 (Resolved): supress protologue icon if according media uri is missing
Applied in changeset cdm-dataportal:commit:cdm-dataportal|275b2642c2438013cb1ac06bb986dceb388592d7. Andreas Kohlbecker
01:36 PM bug #5948 (In Progress): supress protologue icon if according media uri is missing
Andreas Kohlbecker
01:36 PM bug #5948 (Rejected): supress protologue icon if according media uri is missing
Andreas Kohlbecker
03:35 PM Revision 275b2642 (cdm-dataportal): fix #5948 supressing media when uri is missing, also turning theme function into plain markup function
Andreas Kohlbecker
03:18 PM Revision e693adbd (cdm-vaadin): ref #5458 Reduce size of distribution table
- Show only abbreviated labels for presence absence terms Patrick Plitzner
02:22 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Whatever solution we choose please cover it with an according test. Andreas Müller
02:19 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> Katja Luther wrote:
> I don't want to change the readonly=false, but maybe it is possible to ...
Andreas Müller
12:22 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > The problem seems to be that we have to ...
Katja Luther
11:58 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Andreas Müller wrote:
> Katja Luther wrote:
> > The problem seems to be that we have to use the @transactional(read...
Katja Luther
11:43 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> The problem seems to be that we have to use the @transactional(readonly=false) and this means ...
Andreas Müller
11:30 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
The problem seems to be that we have to use the @transactional(readonly=false) and this means that the commit is call... Katja Luther
02:21 PM Revision 49a35b7d (cdm-vaadin): ref #5458 Refactoring
- removed single implemented interfaces
- merged methods
- removed unnecessary try&catch blocks
Patrick Plitzner
01:32 PM Revision 0b554b40 (cdm-dataportal): fix #6110 using the same request protocol for the map service
Andreas Kohlbecker
01:25 PM feature request #6110: Use https for map service calls when the portal is access via https
This needs to be tested at the edit-test server. The following requirements need to be fulfilled for testing:
* po...
Andreas Kohlbecker
01:22 PM feature request #6110 (Resolved): Use https for map service calls when the portal is access via https
Applied in changeset commit:cdm-dataportal|7aeb752750a73e9a99fa20b4c3e932aae49a2a94. Andreas Kohlbecker
01:21 PM Revision 7aeb7527 (cdm-dataportal): fix #6110 using the same request protocol for the map service
Andreas Kohlbecker
11:15 AM Revision f9837f2a (cdm-vaadin): ref #5458 Add TermCacher class
Patrick Plitzner
10:46 AM Revision 4f7ccb87 (cdm-vaadin): ref #5458 Implement multi select for NamedArea selection
Patrick Plitzner
10:04 AM task #6118: evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
updating development test script to latest implementation Andreas Kohlbecker
10:01 AM Revision 638f3be5 (cdmlib): ref #6118 OAuth2 ready for production
- removing development setup
- UserController to return details on the authenticated principal
Andreas Kohlbecker
10:01 AM Revision 9872d2b2 (cdmlib): ref #6118 working test implementation of OAuth2
- grant types 'implicite', 'authorization_code' tested and working
- /manage/ service protected (OK for production...
Andreas Kohlbecker
10:01 AM Revision 01fe562b (cdmlib): ref #6118 OAuth2 AuthorizationServer implemented
Andreas Kohlbecker
10:01 AM Revision 9d398078 (cdmlib): rel #6118 switching from xml to java based web security configuration
Andreas Kohlbecker
10:01 AM Revision e5c1f174 (cdmlib): cleaning indent
Andreas Kohlbecker

10/10/2016

10:39 PM task #6118: evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
Adding shell script to test different authentication modes. Andreas Kohlbecker
04:38 PM Revision e37d3114 (cdm-vaadin): ref #5458 Add generated serial version uid
Patrick Plitzner
10:17 AM Revision c1c005ed (cdm-vaadin): Remove generated css files and add them to .gitignore
Patrick Plitzner

10/09/2016

04:16 PM bug #6119 (Resolved): Implement uuidAndTitleCache remote services
Andreas Müller
04:13 PM bug #6119 (In Progress): Implement uuidAndTitleCache remote services
Andreas Müller

10/07/2016

07:10 PM task #3547 (In Progress): Remove size of test data where possible
Andreas Müller
07:06 PM Revision d5d3fb6e (cdmlib): ref #3547 remove testDelete-result1 and cleanup and reuse testDelete-result
Andreas Müller
06:30 PM Revision 52ee385e (cdmlib): ref #3547 Cleanup TaxonDaoHibernateImplTest.xml
Andreas Müller
04:56 PM Revision 77cb7459 (cdmlib): ref #3547 fix related tests
Andreas Müller
04:06 PM Revision 9a3490b1 (cdmlib): ref #3547 Cleanup TaxonDao.testGetTaxaByNameAndArea.xml test data a bit
Andreas Müller
03:46 PM Revision 8831fc56 (cdmlib): ref #3547 Cleanup TaxonDao.testFindDeleted test data
Andreas Müller
03:35 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
This is the same for taxa and names. Katja Luther
03:30 PM Revision 58c5052a (cdmlib): ref #3547 Cleanup TaxonDao.testFind test data
Andreas Müller
03:27 PM bug #3658 (In Progress): Update Nomenclatural code for datasources
Andreas Müller
03:11 PM Revision 683f6ce0 (cdmlib): ref #5972: add method to count referencing objects
Katja Luther
03:08 PM bug #5888: Deleting factual data does not work (dirty flag not set)
the description needs to be passed to the postExecute method, this triggers the dirty flag. Katja Luther
03:04 PM bug #5888 (Resolved): Deleting factual data does not work (dirty flag not set)
Applied in changeset taxeditor:commit:taxeditor|a3e69a37383c07c575a7592c1093f68dcc6e830a. Katja Luther
03:06 PM Revision ed506dcb (cdmlib): fix #6089 Remove taxonomicParentCache and taxonomicChildrenCount, fix Testdata
Andreas Müller
03:03 PM Revision a3e69a37 (taxeditor): fix #5888: add the element as argument to postExecute method s
Katja Luther
12:27 PM bug #5832: It is not possible to search for hybrids in taxon search
This is because hybrids do not have a namecache and the search works on the nameCache. Katja Luther
11:22 AM task #6089 (Resolved): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Applied in changeset cdmlib:commit:cdmlib|30451d3cd027497576ee106c435c62d4b5021e9a. Andreas Müller
11:22 AM Revision 30451d3c (cdmlib): fix #6089 Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Andreas Müller
11:17 AM Revision a14ebae1 (cdmlib): remove ImportReport in model branch
Andreas Müller
11:13 AM bug #6120: Cleanup uuidAndTitleCache methods
Applied in changeset cdmlib:commit:cdmlib|c6af6a3d58f8fa0ec2a803f8651b8acd04139fde. Andreas Müller
11:13 AM bug #6072: Implement getTaxonomicGroups for Edaphobase
Applied in changeset cdmlib:commit:cdmlib|1e8a54ffa558ce07fa340c307d6ec447a8f66d40. Andreas Müller
10:53 AM Revision 4f2fff32 (cdmlib): minor
Andreas Müller
10:53 AM Revision 4881f5e5 (cdmlib): ref #5499 add some markerType methods
Andreas Müller
10:53 AM Revision 062fde15 (cdmlib): fix #6122 fix signature issue
Andreas Müller
10:53 AM Revision b4b7bfe8 (cdmlib): fix #6122 add titleCache service to remote
Andreas Müller
10:53 AM Revision 2d1fc4f4 (cdmlib): Use abstract controller for identifiable controllers
Andreas Müller
10:53 AM Revision 4642e957 (cdmlib): Create and rename Identifiable(List)Controllers
Andreas Müller
10:53 AM Revision 40812151 (cdmlib): fix #6122 add titleCache service
Andreas Müller
10:53 AM Revision 33754b79 (cdmlib): fx #6119 Implement uuidAndTitleCache remote services
Andreas Müller
10:53 AM Revision c6af6a3d (cdmlib): fix #6120 Cleanup uuidAndTitleCache methods
Andreas Müller
10:53 AM Revision 77351513 (cdmlib): Minor cleanup
Andreas Müller
10:53 AM Revision 51cfe899 (cdmlib): add missing changes
Katja Luther
10:53 AM Revision 4b37153c (cdmlib): minor
Katja Luther
10:52 AM Revision 91e5776b (cdmlib): specimen import/search changes
Katja Luther
10:44 AM Revision d9b720ac (cdmlib): delete system.out.println from test
Katja Luther
10:44 AM Revision bb8caa72 (cdmlib): Updating develop poms back to pre merge state
jenkins
10:41 AM Revision 49773574 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
10:35 AM Revision 04b17372 (cdmlib): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
10:23 AM Revision 75921880 (cdmlib): updating poms for 4.4.0-SNAPSHOT development
jenkins
10:23 AM Revision ff7f5e37 (cdmlib): Rename doPageChildNodes
Andreas Müller
10:23 AM Revision 189558f3 (cdmlib): ref #6065 improved Pager handling
Andreas Müller
10:23 AM Revision 21d66ebf (cdmlib): ref #6065 improved Pager handling and pager exception handling
Andreas Müller
10:23 AM Revision d8c4f8b9 (cdmlib): ref #6065 Handle synonyms in taxonInContext
Andreas Müller
10:23 AM Revision 7dde0731 (cdmlib): Cleanup
Andreas Müller
10:23 AM Revision 1d54cd17 (cdmlib): ref #6065 fix NPEs in classification service
Andreas Müller
10:23 AM Revision ae7b9470 (cdmlib): ref #6065 fix NPE in pageSize/limit
Andreas Müller
10:23 AM Revision 8c2c6a09 (cdmlib): ref #6065 fix NPE in pageSize
Andreas Müller
10:23 AM Revision 4f290ba6 (cdmlib): ref #6065 fix page size and add marked ancestors
Andreas Müller
10:23 AM Revision fe053257 (cdmlib): ref #6065 fix missing taxonUuid in URL
Andreas Müller
10:23 AM Revision d17b9e90 (cdmlib): ref #6065 first implementation of taxonInContext service
Andreas Müller
10:23 AM Revision 50355d23 (cdmlib): cleanup
Andreas Müller
10:23 AM Revision 3a646557 (cdmlib): further refactor FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller
10:23 AM Revision 912932b1 (cdmlib): rename FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller
10:23 AM Revision 83220271 (cdmlib): Revert "fix #6037 per batch transction commit implemented for excel imports"
This reverts commit 53067226137bd8528e6bc26f21edbf98aebe26a9. Andreas Kohlbecker
10:23 AM Revision f6930dd5 (cdmlib): ref #6066 rename childNodes to childNodesByTaxon in ClassificationController
Andreas Müller
10:23 AM Revision b296585f (cdmlib): ref #6066 add getChildNodes to classification service
Andreas Müller
10:23 AM Revision 87e6bb6f (cdmlib): ref #6087 adding orderINdex to TermDTO
Andreas Kohlbecker
10:23 AM Revision f742ce44 (cdmlib): ref #6066 fix Index out of bound exception
Andreas Müller
10:23 AM Revision 38b82688 (cdmlib): fix #6061: search in titlecache and nomenclatural titleCache in getUuidAndAbbrevTitleCache
Katja Luther
10:23 AM Revision 6a70de90 (cdmlib): fix failing IPNI Service Test
Katja Luther
10:23 AM Revision 1b107dc2 (cdmlib): revert tests
Andreas Müller
10:23 AM Revision 4dc39e99 (cdmlib): Ignore service test
Andreas Müller
10:23 AM Revision 0cf72dcb (cdmlib): ref #6072 test missing entity in webservice
Andreas Müller
10:23 AM Revision 5c95a5bf (cdmlib): ref #6072 test missing entity in webservice
Andreas Müller
10:23 AM Revision c70c5dcb (cdmlib): ref #6072 set defaults to false and hardcode includeEntity to true for debugging
Andreas Müller
10:23 AM Revision 51104f62 (cdmlib): ref #6072 fix signature issue in remote (2nd try)
Andreas Müller
10:23 AM Revision 5dd4feb8 (cdmlib): ref #6072 fix signature issue in remote
Andreas Müller
10:23 AM Revision c46bcf17 (cdmlib): ref #6072 fix compilation issue in IIdentifiableEntityService
Andreas Müller
10:23 AM Revision d28fe45c (cdmlib): Cleanup
Andreas Müller
10:23 AM Revision 1e8a54ff (cdmlib): fix #6072 Implement findIdentifiableEntityByMarkers
Andreas Müller
10:23 AM Revision 4fb554ff (cdmlib): ref #6089 Remove failing irrelevant test
Andreas Müller
10:23 AM Revision e5605065 (cdmlib): ref #6089 Remove all calls and methods for taxonomicChildrenCount and taxonomicParentCache
Andreas Müller
10:23 AM Revision 9f1aa368 (cdmlib): Cleanup; Delete unnecessary test classes.
Andreas Müller
10:23 AM Revision 19ef2a42 (cdmlib): fix #6066 Implement doPageChildNodes with doSynonyms
Andreas Müller
10:23 AM Revision 1d5f625c (cdmlib): Clean up
Andreas Müller
10:23 AM Revision e4b34dc5 (cdmlib): Adapt failing test in NonViralNameParserImplTest
Andreas Müller
10:23 AM Revision 84bb1d2c (cdmlib): ref #6086 solving the problems in the java-script of the web application monitor widget:
- chunk information: number rounded and label renamed
- Percentage number rounding fixed
Andreas Kohlbecker
10:23 AM Revision d178ecb9 (cdmlib): ref #6086 fix failing test
Andreas Müller
10:23 AM Revision 4cb92234 (cdmlib): rel #6086 Improve rounding for progress monitor
* fix error in rounding by using round not ceil
* add method for user defined scaled rounding
Andreas Müller
10:23 AM Revision be0e5d61 (cdmlib): some cleanup
Andreas Müller
10:23 AM Revision 7258c318 (cdmlib): fix #5837: search on abbrevTitleCache instead of abbrev title
Katja Luther
10:23 AM Revision 95f65f5e (cdmlib): correcting erroneous commit
Andreas Kohlbecker
10:23 AM Revision 10b839e4 (cdmlib): gitignore
Andreas Kohlbecker
10:23 AM Revision 4aa98446 (cdmlib): fix #4497 solving problem with status parameter in taxon search
Andreas Kohlbecker
10:23 AM Revision 1990fe50 (cdmlib): ref #5969: add PreferenceService to applicationController
Katja Luther
10:23 AM Revision 77c1c705 (cdmlib): Remove duplicate method
Patrick Plitzner
10:23 AM Revision 07a6e50e (cdmlib): rel #5957 improve tests for groupTaxaByHigherTaxon
Andreas Müller
10:23 AM Revision a8609cad (cdmlib): fix #5957 fix IndexOutOfBound exception and some other improvements for groupByHigherTaxon
Andreas Müller
10:23 AM Revision c00d3bcc (cdmlib): minor
Andreas Müller
10:23 AM Revision 05e59317 (cdmlib): better percentage values from Progressmonitor
Andreas Kohlbecker
10:23 AM Revision d436abeb (cdmlib): fix #6061: search for titlecache if abbrev title is empty
Katja Luther
10:23 AM Revision 03c8f07b (cdmlib): fix #6061: smaller changes
Katja Luther
10:23 AM Revision 5ef16029 (cdmlib): ref #6032 Remove test for rank as mentioned in ticket
Patrick Plitzner
10:23 AM Revision f995ae78 (cdmlib): Add Vorabdr. to parsable volume
Andreas Müller
10:23 AM Revision f380413e (cdmlib): minor
Katja Luther
10:23 AM Revision e1c69e2f (cdmlib): minor
Katja Luther
10:23 AM Revision 3d36bbcd (cdmlib): smaller changes for importing nom. reference in normal explicit excel import
Katja Luther
10:22 AM Revision f44fb5c3 (cdmlib): normal explicit excel import: add reference to name import
Katja Luther
10:22 AM Revision 0c949c56 (cdmlib): Add javadoc for languages
Andreas Müller
10:22 AM Revision d40ad0be (cdmlib): fix #6060 parse author with -e-
Andreas Müller
10:22 AM Revision 9892fe45 (cdmlib): rel #6057 further improvements for authors with accent grave
Andreas Müller
10:22 AM Revision a333126e (cdmlib): fix #6057 Accent Graph in author parser
Andreas Müller
10:22 AM Revision 9fc0e990 (cdmlib): ref #4260 Added test for 0 parameter query
Patrick Plitzner
10:22 AM Revision f3755e6f (cdmlib): ref #6045 some comments and clean up
Patrick Plitzner
10:22 AM Revision 6d3f64b8 (cdmlib): minor changes in excel import
Katja Luther
10:22 AM Revision e2b14fdb (cdmlib): adding missing test file for tropicos import
Katja Luther
10:22 AM Revision 47da1bc9 (cdmlib): extend excel import to cover simple tropicos data
Katja Luther
10:22 AM Revision f3e8146c (cdmlib): ref #6032 test name parser support for hybrid ranks and non-hybrids
Andreas Müller
10:22 AM Revision ec9e0b76 (cdmlib): ref #6030 Add additional test for genus hybrid formula parsing
Andreas Müller
10:22 AM Revision 50aca191 (cdmlib): fix #5893: set parse reference public to use it in fauna europaea import
Katja Luther
10:22 AM Revision 4cae9071 (cdmlib): fix #6030 Parse Genus hybrid formulas correctly
Andreas Müller
10:22 AM Revision 2f495573 (cdmlib): ref #6045 Add test for getAncestor()
Patrick Plitzner
10:22 AM Revision 889c7e91 (cdmlib): fix #6045: fixing the NaturalOrderComparator and complete the test
Katja Luther
10:22 AM Revision aa478e85 (cdmlib): ref #6045 Fix NPE for TaxonNaturalComparator
- fix getAncestors() method of taxon node
- added JUnit test
Patrick Plitzner
10:22 AM Revision a9e92136 (cdmlib): fix #5869 adapt implementation for reusing names or taxa with remoting
Katja Luther
10:22 AM Revision cd53ed98 (cdmlib): ref #5837 implement search for nomenclatural title
Katja Luther
10:22 AM Revision a82e8663 (cdmlib): ref #6042 Avoid -title cache generation not implemented- for citations
in specimen table view Patrick Plitzner
10:22 AM Revision db7c13f4 (cdmlib): fix #5828: add abbrevTitleCache and titleCache to uuidAndTitleCache
Katja Luther
10:22 AM Revision c13b20b4 (cdmlib): revert the changes in representation of rank infraspecific unranked
Katja Luther
10:22 AM Revision 81bcaf06 (cdmlib): Remove @Ignore from test
Patrick Plitzner
10:22 AM Revision 075bc33f (cdmlib): Fix merge problems
Patrick Plitzner
10:22 AM Revision d81a4119 (cdmlib): fix #6001 Clean up multiple sourceNotLinked() methods
Patrick Plitzner
10:22 AM Revision f073606c (cdmlib): Fix titlecache issues for specimen table in data portal
- Use Link class for every link
- Open all links in new window
Patrick Plitzner
10:22 AM Revision 80d86f0e (cdmlib): smaller changes
Katja Luther
10:22 AM Revision d3c53a58 (cdmlib): specimen import changes
Katja Luther
10:22 AM Revision 7f3f7703 (cdmlib): Import specimen scans with StillImage type
Patrick Plitzner
10:22 AM Revision e5413aa3 (cdmlib): Remove unneccesary casts
Patrick Plitzner
10:22 AM Revision b6c2dd01 (cdmlib): ref #5448 Change abbreviation for unranked infraspecific rank
Patrick Plitzner
10:22 AM Revision 65053ce9 (cdmlib): fix #6037 per batch transction commit implemented for excel imports
Andreas Kohlbecker
10:22 AM Revision b2cdc597 (cdmlib): #5751 remove version numbers from cdmlib-db and some cleanup
Andreas Müller
10:22 AM Revision 90a4759c (cdmlib): #5751 finish redo r28780
* use cdmlib-test in persistence for 2 antrun plugin and hibernate3 plugin Andreas Müller
10:22 AM Revision 9d99878c (cdmlib): #5751 Partly redo r28780,
* remove com.mchange from cdmlib-remote-webapp test scope
* use cdmlib-db in persistence for 2 further plugins
Andreas Müller
10:22 AM Revision 89edc8d2 (cdmlib): #5751 further redo r28776, handle c3p0 via cdmlib-db in persistence
Andreas Müller
10:22 AM Revision ddfeb94f (cdmlib): #5751 further redo r28776, add cdmlib-db to persistence and remote-webapp
Andreas Müller
10:22 AM Revision 9b14d59d (cdmlib): #5751 Partly redo r28776, add c3p0 and mchange to cdmlib-db
* r28776 had been reverted due to problems, try to redo those parts that
do not create problems
Andreas Müller
10:22 AM Revision c81d69db (cdmlib): #3868 Add nothovar. test
Andreas Müller
10:22 AM Revision 3a8df162 (cdmlib): #6000 fix missing default color
Andreas Müller
10:22 AM Revision 53047c94 (cdmlib): #6000 Add static methods and uuids for new PAT terms
Andreas Müller
10:22 AM Revision b9cc4434 (cdmlib): #6000 Add some new PresenceAbsenceTerms from Cyprus and Cuba
* Invasive changed to naturalized invasive (Cyprus, according to Pysek)
* naturalized invasive: presence questionab...
Andreas Müller
10:22 AM Revision e561a9d4 (cdmlib): #6000 Use new CASUAL Method instead of derpeacted INTRODUCED_ADVENTITIOUS
Andreas Müller
10:22 AM Revision eafa3175 (cdmlib): #6000 Unify some PresenceAbsenceTerms (merge naturalized, rename adventitious -> casual, etc)
Andreas Müller
10:22 AM Revision 67cecfbb (cdmlib): Improve import report
Patrick Plitzner
10:22 AM Revision 15b4b2c0 (cdmlib): #5251 Fix Incorrect taxon source attachments
Patrick Plitzner
10:22 AM Revision adfafad3 (cdmlib): Improved import report
Patrick Plitzner

10/06/2016

05:02 PM Revision b5a13d3d (cdmlib): set the tests to ignore until the dna import is fixed again
Katja Luther
05:02 PM Revision 29ee6f42 (cdmlib): fix merge problems
Katja Luther
05:02 PM Revision 40ad1567 (cdmlib): fix merge problems
Katja Luther
05:02 PM Revision 51fdd82a (cdmlib): fix merge problem
Katja Luther
05:02 PM Revision a031824e (cdmlib): minor
Katja Luther
05:02 PM Revision 180fa299 (cdmlib): minor
Katja Luther
05:02 PM Revision e797de01 (cdmlib): missing changes in test
Katja Luther
05:02 PM Revision 02d46959 (cdmlib): Avoid double dot at end of field unit titlecache
Patrick Plitzner
05:02 PM Revision 2bcd23da (cdmlib): Improve ABCD import report
Patrick Plitzner
05:02 PM Revision 187bc599 (cdmlib): missing changes in taxonDao
Katja Luther
05:02 PM Revision cb77e468 (cdmlib): minor
Katja Luther
05:02 PM Revision d9a28e0c (cdmlib): minor
Katja Luther
05:02 PM Revision b41d771a (cdmlib): delete the excluded taxa parameter for UuidAndTitleCache of classificationService
Katja Luther
05:01 PM Revision 702e2f6e (cdmlib): Revert "getUuidAndTitleCache of classificationservice does not need the excluded taxa"
This reverts commit 1b553592f0055e0fec1ab3878236fa0ecad1bd17. Katja Luther
05:01 PM Revision 4d017d52 (cdmlib): hamonization of specimen import
Katja Luther
05:01 PM Revision 1a8f15ad (cdmlib): first implementation for harmonization of import of specimen data
Katja Luther
05:01 PM Revision ce2ea9e9 (cdmlib): sortindex updater utilities
Katja Luther
05:01 PM Revision 4d622b5d (cdmlib): getUuidAndTitleCache of classificationservice does not need the excluded taxa
Katja Luther
05:01 PM Revision 92835c7d (cdmlib): Allow whitespace after species epithet hybrid sign
Andreas Müller
05:01 PM Revision c013af56 (cdmlib): #3868 Handle notho ranks correctly while formatting
Andreas Müller
05:01 PM Revision 33543fe4 (cdmlib): Use title cache as fallback for specimen DTO for portal table
Patrick Plitzner
05:01 PM Revision 21ad7624 (cdmlib): #5981 Add abbreviation to Rank "Cultivar"
Andreas Müller
05:01 PM Revision d6fa3b9e (cdmlib): Use EN_DASH in E+M Condensed Distribution
Andreas Müller
05:01 PM Revision 551fdcf6 (cdmlib): #5777 Replace dash type in PAT symbols
Andreas Müller
05:01 PM Revision 5abd7a84 (cdmlib): #5777 Fix symbol reading for PresenceAbsenceTerm csv
Andreas Müller
05:01 PM Revision 9d567be5 (cdmlib): Add isInfraGenericButNotSpeciesGroup() method to Rank
Andreas Müller
05:01 PM Revision 17e6a14c (cdmlib): Pass pageSize and pageNumber to list method
Patrick Plitzner
05:01 PM Revision 5df1abe9 (cdmlib): small changes in CsvNameExport
Katja Luther
05:01 PM Revision aaf5494f (cdmlib): It seems as if oclc number are no longer supported by the MobotOpenUrl api, test ignored
Andreas Kohlbecker
05:01 PM Revision adfc15ec (cdmlib): small change in CdvNameExport
Katja Luther
04:58 PM Revision c047b4ab (cdmlib): minor
Andreas Müller
04:58 PM Revision faeea161 (cdmlib): ref #5499 add some markerType methods
Andreas Müller
04:44 PM Revision d7023fd8 (taxeditor): fix transient services
Andreas Müller
04:16 PM Revision 43539f49 (cdmlib): fix #6122 fix signature issue
Andreas Müller
03:23 PM bug #6121: NPE during portal web service requests that go through BaseController.doGetMethod()
Be aware that the edaphobase uuids are not yet stable Andreas Müller
01:21 PM bug #6121 (Worksforme): NPE during portal web service requests that go through BaseController.doGetMethod()

For example:
http://api.cybertaxonomy.org/edaphobase/portal/taxon/a032b2bc-84dd-44d5-a149-57a3e23da605/sec.json
...
Andreas Kohlbecker
02:51 PM Revision 9c337ba9 (cdmlib): fix #6122 add titleCache service to remote
Andreas Müller
02:38 PM Revision d7043c98 (cdmlib): Use abstract controller for identifiable controllers
Andreas Müller
02:32 PM Revision a18426a8 (cdmlib): Create and rename Identifiable(List)Controllers
Andreas Müller
02:24 PM bug #6122 (Resolved): add titleCache service
Applied in changeset commit:cdmlib|3dfc49ed20bbef8f573798864ced75424f892470. Andreas Müller
02:21 PM bug #6122 (Closed): add titleCache service
We need a service that returns only the titleCache for a given uuid.
By default it returns the titleCache as store...
Andreas Müller
02:24 PM Revision 3dfc49ed (cdmlib): fix #6122 add titleCache service
Andreas Müller
01:24 PM Revision d74d7297 (cdmlib): fx #6119 Implement uuidAndTitleCache remote services
Andreas Müller
01:00 PM bug #6120: Cleanup uuidAndTitleCache methods
Andreas Müller wrote:
> Please also check the code if you think it is reasonable
In TaxonBaseSelectionDialog it n...
Katja Luther
12:50 PM bug #6120: Cleanup uuidAndTitleCache methods
Please also check the code if you think it is reasonable Andreas Müller
12:37 PM bug #6120 (Resolved): Cleanup uuidAndTitleCache methods
Applied in changeset cdmlib:commit:cdmlib|8d6c8a12abe82836eae03eab6a43b3cdea6d26df. Andreas Müller
12:35 PM bug #6120 (Closed): Cleanup uuidAndTitleCache methods
In TaxonService we have 2 methods getUuidAndTitleCacheTaxon and getUuidAndTitleCacheSynonym. They could be merged int... Andreas Müller
12:48 PM Revision 53a122e4 (taxeditor): fix #6120 Cleanup uuidAndTitleCache methods
Andreas Müller
12:36 PM Revision 8d6c8a12 (cdmlib): fix #6120 Cleanup uuidAndTitleCache methods
Andreas Müller
11:51 AM bug #6119 (Closed): Implement uuidAndTitleCache remote services
Andreas Müller

10/05/2016

02:57 PM Revision 22738258 (taxeditor): minor
Katja Luther
02:55 PM Revision cdd0428a (taxeditor): ref #6047: add the adapted files
Katja Luther
02:52 PM Revision 79d06d0f (taxeditor): fix #6047: add the possibility to the termComboElement that the idInVoc is used as label
Katja Luther
02:27 PM bug #5854 (Worksforme): Deleting terms has no effect
the deletion already works and the lists of terms are refereshed correctly. Katja Luther
02:17 PM bug #6056 (Closed): Checklist Editor does not close session
Katja Luther
01:18 PM task #6118 (In Progress): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
Andreas Kohlbecker
01:18 PM task #6118 (Closed): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
[spring-security-oauth](http://projects.spring.io/spring-security-oauth) & [Spring-Cloud-Security](http://cloud.sprin... Andreas Kohlbecker
12:54 PM task #2055: Improve Article creation for nomenclatural references
needs time for discussion and consistency check with Berlin Model situation (see duplicating ticket) Andreas Müller
12:40 PM bug #5211 (Worksforme): Error when creating new taxon /problem with sortindex in taxon tree
Probably fixed with better handling for null values in merge. Andreas Müller
12:19 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Or even better solution, use DTOs on server side. Andreas Müller
12:11 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Maybe the problem is the label provider which initializes lazy objects. Which thread does it use? Andreas Müller
11:38 AM bug #5965 (In Progress): Check if authentication works correctly after datasource change
Andreas Müller
11:28 AM feature request #5972: Prevent user from unwanted author and reference updates
Decision: for id > 0 implement check for further references and inform the user in red about these references if they... Andreas Müller

10/04/2016

02:26 PM Revision c5764380 (cdmlib): Minor cleanup
Andreas Müller
12:55 PM bug #6115: protect cdm content by drupal permission
Hi Andreas,
the review of this ticket need intensive testing. I suggest we use one of the published portals on the...
Andreas Kohlbecker
12:45 PM bug #6115 (Resolved): protect cdm content by drupal permission
Applied in changeset cdm-dataportal:commit:cdm-dataportal|c6fe437bfe330b2aa1cc96d32d956edfc14f8b19. Andreas Kohlbecker
12:50 PM bug #6062 (Closed): NPE in RefencingObjects for TaxonNameDescription
Though #5616 is not yet fully fixed I think we can close this ticket now. Andreas Müller
12:45 PM feature request #5616: Add the"Open in..." menu to taxon search
The first issue seems to be fixed.
Handling of orphaned taxa still does not work (neither the icon nor the right c...
Andreas Müller
12:44 PM Revision fd5d8378 (cdm-dataportal): removing unsed permissions defined in cdm_api module
Andreas Kohlbecker
12:44 PM Revision b5ff8a25 (cdm-dataportal): removing unsed permissions defined in extlinks module
Andreas Kohlbecker
12:44 PM Revision c6fe437b (cdm-dataportal): fix #6115 protecting all cdm content with new permission
Andreas Kohlbecker
12:44 PM Revision 8385a9f2 (cdm-dataportal): removing unused permission
Andreas Kohlbecker
12:35 PM Revision 6a0ca989 (cdm-dataportal): fix #6114 ref #4379 avoiding empty citation feature block with only footnote keys - bug fix
Andreas Kohlbecker
12:21 PM feature request #5969: Implement CdmPreference reading for database preferences
I added a remark that that the preference is stored in db and a check whether the editor is already connected to a da... Katja Luther
11:28 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences
Katja Luther wrote:
> In Revision 4625a011 a check for the existence of the preference in DB is added.
This does ...
Andreas Müller
12:19 PM Revision 68f310fd (taxeditor): ref #5969: add remark that the nomenclatural code preference is stored in db
Katja Luther
12:11 PM Revision 2a7c9630 (taxeditor): ref #5969: check for db connection before ty to read the preferred nomenclatural code
Katja Luther
11:53 AM bug #5967 (Feedback): Adapt default update site to production update site.
If no entry exists in eu.etaxonomy.taxeditor.store.prefs everything works as expected as far as I can see. Meaning, t... Andreas Müller
11:17 AM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget
Seems to work well. Related issue about layout of filter in new ticket: #6116 Andreas Müller
11:12 AM bug #6116 (New): Advanced Search area filter layout needs to be improved
The new resizable version of the area filter looks much better already.
But 2 issues need to be solved.
1) If >...
Andreas Müller

09/30/2016

09:09 PM Revision 8f3575e1 (cdmlib): add missing changes
Katja Luther
04:34 PM Revision 1600af50 (cdmlib): minor
Katja Luther
04:09 PM Revision 090cb34e (cdmlib): specimen import/search changes
Katja Luther

09/29/2016

06:40 PM bug #6115 (Closed): protect cdm content by drupal permission
A couple of portals are currently in maintenance mode because the taxa and names must not be disclosed to the public.... Andreas Kohlbecker
06:09 PM bug #6114 (Resolved): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
Applied in changeset cdm-dataportal:commit:cdm-dataportal|7a751db42d606dc2662560f6a7e19bab6896fe8b. Andreas Kohlbecker
05:24 PM bug #6114 (Closed): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
For details see #4379
This currently affects the FaunaEuropaea project!
Andreas Kohlbecker
06:09 PM Revision 7a751db4 (cdm-dataportal): fix #6114 ref #4379 avoiding empty citation feature block with only footnote keys
Andreas Kohlbecker
04:30 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Conclusion of the discussion:
* The current functionality can not simply be relabeled
* The current functionality...
Andreas Müller
02:07 PM bug #2957: running maven site:site for Taxonomic Editor fails
This is broken since **4 Years**. Who can take care for this ticket? Andreas Kohlbecker
11:01 AM feature request #6113 (Closed): webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML

KML 2.2 : https://portal.ogc.org/files/?artifact_id=27810
potentially helpful libraries:
* https://github.com...
Andreas Kohlbecker
10:57 AM bug #3226: openlayers map google baselayers: api keys rejected
this is easy to fix Andreas Kohlbecker

09/28/2016

02:55 PM Revision a299ffc0 (cdmlib-apps): cleanup IAPTImportTest
Andreas Müller

09/27/2016

01:26 PM bug #6111 (Closed): invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list()
The Specimens Table in the chichorieae portal is no longer working due to a bug in the `CdmEntityDaoBase.list()` meth... Andreas Kohlbecker
12:06 PM Revision 1069d3f0 (cdm-dataportal): HOTFIX for 4.3.0
Andreas Kohlbecker
12:05 PM Revision b3b63fc8 (cdm-dataportal): HOTFIX for 4.3.0
Andreas Kohlbecker
08:55 AM Revision 0057eb30 (cdmlib): delete system.out.println from test
Katja Luther

09/26/2016

05:25 PM feature request #6110 (Closed): Use https for map service calls when the portal is access via https
Andreas Kohlbecker
03:17 PM feature request #6076: Specimen biocase search should work on observations
The specimen search works only for preserved specimen, but should return all kind of specimen.
Therefore the filte...
Katja Luther
01:33 PM feature request #6076 (In Progress): Specimen biocase search should work on observations
Please add some more information what it is all about. Andreas Müller
02:38 PM feature request #5969 (Resolved): Implement CdmPreference reading for database preferences
In Revision 4625a011 a check for the existence of the preference in DB is added. Katja Luther
01:48 PM bug #6051: Add toggle button for simple details view for names
try to synchronize with same issue in media view Andreas Müller
01:13 PM bug #4348: Remove InputDialog in creating new bulk editor entities where not needed
Explain solution with wizards and create new tickets for all required wizards. Andreas Müller
12:18 PM feature request #5185 (Worksforme): drag & drop for descriptions and descriptionElements
Drag & drop works fine. But after creating a new Description you have to save before move a descriptionelement to the... Katja Luther
10:15 AM feature request #5185: drag & drop for descriptions and descriptionElements
Is this still open. Adapt target version if closed. Andreas Müller
12:17 PM bug #6109 (Worksforme): Drag & Drop after creating a new description fails
When creating a new description and try to move a description element to this new description without saving throws t... Katja Luther
10:36 AM bug #6042: Campanula portal TODOS
Please create sub tasks and add mails as comments Andreas Müller
10:24 AM bug #6077 (Resolved): Import of gathering images
Andreas Müller
09:39 AM bug #6088: New reproducable multiple representations exception for name relationships
I think I could find when this exception occurs: Always when using a name already opened in bulk editor to create the... Katja Luther
08:52 AM Revision c92df786 (taxeditor): ref #3573 Add streamlined ABCD import configurator page
Patrick Plitzner
08:36 AM Revision 84bd3966 (taxeditor): Fix label for term vocabularies in term editor
Patrick Plitzner
08:14 AM Revision dd433955 (cdm-vaadin): ref #5458 Add named areas selection box
Patrick Plitzner
06:32 AM Revision 9c1235e7 (taxeditor): Trim code
Patrick Plitzner
05:31 AM Revision ce1318e1 (cdm-vaadin): ref #5458 Enhance detail window messages
Patrick Plitzner

09/23/2016

04:47 PM Revision 190378ef (cdm-server): Merge branch 'release/4.3.0' into develop
jenkins
04:46 PM Revision 3c5d8ea0 (cdm-server): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
04:46 PM Revision 7cafc316 (cdm-webapp): Merge branch 'release/4.3.0' into develop
jenkins
04:46 PM Revision 20c2c91a (cdm-webapp): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
04:46 PM Revision 8b3f925a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.3.0
jenkins
04:24 PM Revision 2753ac07 (taxeditor): Merge branch 'release/4.3.0' into develop
jenkins
04:24 PM Revision 0875c8c1 (taxeditor): Merge branch 'release/4.3.0'
jenkins
03:53 PM Revision 27615a57 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:53 PM Revision 85ba0f85 (cdm-vaadin): Merge branch 'release/4.3.0' into develop
jenkins
03:51 PM Revision 9253394c (cdm-vaadin): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
03:51 PM Revision 51a19104 (cdm-vaadin): jenkins bumping cdmlib.version to 4.3.0
jenkins
03:48 PM Revision b77c38e5 (cdm-dataportal): Merge branch 'release/4.3.0' into develop
jenkins
03:47 PM Revision 9ed30d90 (cdm-dataportal): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
03:47 PM Revision edab5d9f (cdm-dataportal): release-preparation: production level css
jenkins
03:37 PM Revision 24d785a7 (cdmlib): Updating develop poms back to pre merge state
jenkins
03:37 PM Revision 8eb64819 (cdmlib): Merge branch 'master' into develop
jenkins
03:37 PM Revision d735544d (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:37 PM Revision f1bba308 (cdmlib): Merge branch 'release/4.3.0'
jenkins
03:20 PM feature request #6066 (Closed): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
02:00 PM feature request #6066 (Resolved): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
02:00 PM feature request #6066: Edaphobase DTO for getChildrenTaxaOfId
New version in classification controller:
http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5d...
Andreas Müller
03:19 PM Revision c036b9c0 (cdmlib): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
03:16 PM bug #6073 (Closed): Fix groupByHigherTaxon webservice
Andreas Müller
03:15 PM Revision 304b03cc (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.3.0-SNAPSHOT
jenkins
03:15 PM Revision a9e96f8b (cdm-webapp): updating poms for 4.4.0-SNAPSHOT development
jenkins
03:15 PM Revision dcd4cc8e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.4.0-SNAPSHOT
jenkins
03:15 PM Revision 60b7d5b5 (taxeditor): Updated version in pom / project files to taxeditor version : 4.4.0-SNAPSHOT and cdmlib version : 4.4.0-SNAPSHOT
jenkins
03:15 PM Revision 82b02bfc (taxeditor): Updated version in pom / project files to taxeditor version : 4.3.0 and cdmlib version : 4.3.0
jenkins
03:12 PM Revision c87034b8 (cdm-vaadin): jenkins bumping cdmlib.version to 4.3.0-SNAPSHOT
jenkins
03:12 PM Revision 24e2f0a4 (cdm-vaadin): updating poms for 4.4.0-SNAPSHOT development
jenkins
03:12 PM Revision 5043921c (cdm-vaadin): jenkins bumping cdmlib.version to 4.4.0-SNAPSHOT
jenkins
03:12 PM Revision 266b0280 (cdm-server): updating poms for 4.4.0-SNAPSHOT development
jenkins
03:12 PM Revision 1360e865 (cdm-dataportal): updating poms for 4.4.0-SNAPSHOT development
jenkins
03:09 PM Revision 16007e6b (cdmlib): updating poms for 4.4.0-SNAPSHOT development
jenkins
02:52 PM bug #6071 (In Progress): Handle Taxonomische Großgruppen correctly in Edaphobase
Offen:
~~Import~~
Evtl. Offen:
... ~~und danach soll eine Liste von Taxa gruppiert werden können~~
Andreas Müller
02:48 PM Revision 38e1c00c (cdmlib): Rename doPageChildNodes
Andreas Müller
02:41 PM bug #6072: Implement getTaxonomicGroups for Edaphobase
Open issue: handle includeEntity correctly Andreas Müller
02:40 PM bug #6072: Implement getTaxonomicGroups for Edaphobase
This has been solved by implementing findByMarker similar to findByIdentifier.
Example:
http://test.e-taxonomy...
Andreas Müller
12:16 PM feature request #6065 (Resolved): Edaphobase DTO for getTaxonById
Still to test: fehlerhafte UUIDs sollten zu 404 (Reseource not found) Fehler führen. Andreas Müller
12:14 PM feature request #6065: Edaphobase DTO for getTaxonById
Examples:
Taxon with child and synonym:
http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5...
Andreas Müller
11:40 AM Revision 45e49818 (cdmlib): ref #6065 improved Pager handling
Andreas Müller
11:06 AM Revision cb994835 (cdmlib): ref #6065 improved Pager handling and pager exception handling
Andreas Müller
11:03 AM Revision cf76baeb (cdmlib): ref #6065 Handle synonyms in taxonInContext
Andreas Müller
11:00 AM Revision 322ee472 (cdmlib): Cleanup
Andreas Müller

09/22/2016

03:33 PM Revision 38798657 (cdm-vaadin): ref #5458 Enhance user messages
Patrick Plitzner
02:10 PM Revision 316e2aa5 (cdmlib): ref #6065 fix NPEs in classification service
Andreas Müller
01:25 PM Revision d9ea157d (cdmlib): ref #6065 fix NPE in pageSize/limit
Andreas Müller
12:27 PM Revision 3b841bb7 (cdmlib): ref #6065 fix NPE in pageSize
Andreas Müller
12:00 PM Revision 6ae724c9 (cdm-vaadin): ref #5458 Fix duplicate column exception
Patrick Plitzner
11:54 AM Revision 3ed14411 (cdm-vaadin): ref #5458 Extract duplicate code
Patrick Plitzner
11:31 AM Revision 6f0224b6 (cdm-vaadin): ref #5458 Do view data binding in enter() method of table view
Patrick Plitzner
11:27 AM bug #6108 (New): Too many columns exception when selecting TDWG areas in distribution editor
~~~
Sep 22, 2016 11:26:11 AM com.vaadin.data.util.sqlcontainer.SQLContainer getPropertyIds
Warnung: Failed to fetch...
Patrick Plitzner
11:20 AM Revision b1a08bb1 (cdmlib): ref #6065 fix page size and add marked ancestors
Andreas Müller
10:37 AM Revision 765139ec (cdmlib): ref #6065 fix missing taxonUuid in URL
Andreas Müller
09:34 AM Revision 9f8c87ee (cdm-vaadin): ref #5458 Implement update of distribution editor via settings window
Patrick Plitzner

09/21/2016

09:26 PM Revision 16acec00 (taxeditor): fix transient services
Andreas Müller
05:49 PM Revision e1f5fda9 (cdmlib): ref #6065 first implementation of taxonInContext service
Andreas Müller
05:47 PM Revision 59dbcede (cdmlib): cleanup
Andreas Müller
04:30 PM Revision 3e9b93db (cdm-vaadin): ref #5458 Correctly log out of session when clicking logout button
Patrick Plitzner
03:19 PM task #6107 (New): Establish performance monitoring
The suggestions given in https://www.infoq.com/articles/Diagnose-Microservice-Performance-Anti-Patterns could help us... Andreas Kohlbecker
03:11 PM Revision c1499ddd (cdmlib): further refactor FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller
02:48 PM Revision ff5981db (cdmlib): rename FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller
01:07 PM feature request #5890: Implement auto-suggest for data portal
Added "Experimental" to settings description
Should we move this feature to 4.4?
Patrick Plitzner
01:06 PM Revision 6a5d84e2 (cdm-dataportal): ref #5890 Added "Experimental" to settings description
Patrick Plitzner
01:03 PM feature request #5969: Implement CdmPreference reading for database preferences
If no datasource is selected an NPE occurs:
~~~
login :
editor version : 4.3.0.201609201350
server : /
sche...
Andreas Müller
12:05 PM feature request #5969: Implement CdmPreference reading for database preferences
The implementation in the local preferences UI works well now and I think we can close the ticket.
But maybe we ca...
Andreas Müller
12:04 PM bug #6106 (Closed): [Discuss] Handle rights and roles for CdmPreferences
Currently every user can change CdmPreferences.
Do we need a new role "CdmPreferenceAdmin" or should the right be ...
Andreas Müller
12:00 PM Revision 5eb888b1 (cdmlib-apps): ref #5448 Remove unnecessary saving
Patrick Plitzner
12:00 PM Revision a3140a55 (cdmlib-apps): ref #5448 Enhance name checking
Patrick Plitzner
11:45 AM bug #6086 (Closed): Percentage value in ProgressMonitor accuratly rounded
This seems to be fully solved. Andreas Kohlbecker
11:30 AM bug #6105 (Closed): Make CdmPreferences editable in separate view
We started editing CdmPreferences in #5969. This is experimental as the UI mixes local preferences with CdmPreference... Andreas Müller
11:30 AM feature request #6037 (Rejected): Allow intermediate commits in Excel import
This would be nice to have but did not work after the initial implementation, solving the errors seems not worth it. ... Andreas Kohlbecker
11:26 AM Revision 19c7c9f3 (cdmlib): Revert "fix #6037 per batch transction commit implemented for excel imports"
This reverts commit 53067226137bd8528e6bc26f21edbf98aebe26a9. Andreas Kohlbecker
11:14 AM Revision 7dcb230b (taxeditor): fix transient service
Andreas Müller
10:51 AM Revision b661d598 (cdmlib): ref #6066 rename childNodes to childNodesByTaxon in ClassificationController
Andreas Müller
10:07 AM Revision e5fa5ee8 (cdmlib): ref #6066 add getChildNodes to classification service
Andreas Müller
09:45 AM Revision 03e96dec (taxeditor): also add null check in comparator of nomenclaturalReferenceSelectionDialog
Katja Luther
09:39 AM bug #6061 (Closed): Add titlecache to nom author search
Katja Luther
09:37 AM bug #6061 (Resolved): Add titlecache to nom author search
Applied in changeset taxeditor:commit:taxeditor|28027bed8148feb8c9a3cfdbd7e203e62ad51733. Katja Luther
09:32 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> With the above example Aaaa/Bbbb I get the following exception when exactly searching for "*...
Katja Luther
09:37 AM Revision 28027bed (taxeditor): fix #6061: add a null check for abbrevTitleCache and titleCache in comparator
Katja Luther

09/20/2016

11:46 PM bug #6019 (Closed): Link to changeset does not work yet
this works now in the production version Andreas Kohlbecker
11:44 PM task #6006 (Closed): setup automatic refresh of repositories in Redmine
No problems so far, the refresh works for all configured repos. Andreas Kohlbecker
11:41 PM bug #6104 (New): install gitolite
The git repos need an access control and a general management layer.
Gitolite seems to be the best choice: http://...
Andreas Kohlbecker
06:41 PM bug #6100: Name parser problems
Hallo Andreas,
korrekter Sonderfall des Brummitt & Powell Standard:
Da R.Br. 3x vorhanden ist, ist der erste R....
Andreas Kohlbecker
12:55 PM bug #6100 (In Progress): Name parser problems
When running the IAPT import (#6026) a lot of names can not be parsed.
For a better overview I split the affected...
Andreas Kohlbecker
06:36 PM task #6020 (Feedback): Consider replacing custom field 'keywords' by redmine_tags
could you do the xcheck once again? Andreas Kohlbecker
06:35 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
This is fixed now. Andreas Kohlbecker
05:53 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
Da scheint es leider noch Probleme zu geben.
2 Beispiele: http://130.133.70.38/redmine/issues/1420 sollte Tags Fa...
Andreas Kohlbecker
05:50 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
problem solved in awk script
please test again.
Andreas Kohlbecker
05:28 PM Revision f58a08fa (cdm-dataportal): fixing minor bug related to taxonomic children block
Andreas Kohlbecker
05:18 PM bug #6087: Top level items not sorted in tree of advanced search areaFilter widget
Please test again. All remaining issues are solved. Andreas Kohlbecker
05:17 PM bug #6087 (Resolved): Top level items not sorted in tree of advanced search areaFilter widget
Applied in changeset commit:cdm-dataportal|c079337e19b7aa2b7e23a64a78da5085b92029ee. Andreas Kohlbecker
05:17 PM Revision 8f2cbbc0 (cdm-dataportal): ref #6087 resizable area filter widget finetuning
Andreas Kohlbecker
05:17 PM Revision c079337e (cdm-dataportal): fix #6087 sorting areas by orderIndex
Andreas Kohlbecker
05:16 PM Revision 6dbfb2ec (cdmlib): ref #6087 adding orderINdex to TermDTO
Andreas Kohlbecker
04:59 PM feature request #5616: Add the"Open in..." menu to taxon search
Andreas Müller wrote:
> Better now but still some issues:
>
> * For pure names (not related to taxa) the right cl...
Patrick Plitzner
04:29 PM feature request #5616: Add the"Open in..." menu to taxon search
Better now but still some issues:
* For pure names (not related to taxa) the right click menu does not show up at ...
Andreas Müller
01:45 PM feature request #5616: Add the"Open in..." menu to taxon search
Fixed in taxeditor:commit:taxeditor|92634d22a080f6de8af639dae12fe771cda64ceb Patrick Plitzner
04:59 PM Revision 0e9a6a75 (taxeditor): ref #5616 Generalize evaluation of available CdmViewers
Patrick Plitzner
04:22 PM Revision 6b605d3b (cdm-dataportal): ref #6087 area filter widget more initial size and resizeable
Andreas Kohlbecker
04:00 PM feature request #6103 (New): Refactor name editor to be based on taxon nodes
Currently the TaxonEditorInput and the name editor are based on taxa. The editor input already stores the taxon node ... Patrick Plitzner
03:45 PM discussion #1410: DISCUSS - CDM product names
CDM Data Portal:
In the documentation, I just use data portal to refer to the connected Drupal instance as a whole (...
Walter Berendsohn
03:41 PM discussion #1410: DISCUSS - CDM product names
Taxonomic Editor:
For the Documentation, I had changed the designation "EDITor" to "TaxEditor. However, in the user ...
Walter Berendsohn
03:15 PM Revision 016cfa57 (taxeditor): Compare taxon editor input based on taxon instead of taxon node (Revert
93c6e0a894d2e4b0c9df6c7c3feff2f20e0b9e38) Patrick Plitzner
02:49 PM bug #6101 (Resolved): NPE when having multiple lanugage support disabled
Applied in changeset taxeditor:commit:taxeditor|db09bbf4cace84076e5fadb241440655b734827f. Katja Luther
02:11 PM bug #6101 (Closed): NPE when having multiple lanugage support disabled
This happens when doing a right-click in the feature term editor
Some GUI elements are not initialised when multi ...
Patrick Plitzner
02:49 PM Revision db09bbf4 (taxeditor): fix #6101: add a check for multilanguage preference
Katja Luther
02:30 PM feature request #6102 (New): advanced taxon search offers filter on distribution status
successor of #4497
The area filter in the advanced search needs to be complemented with a filter for the distribut...
Andreas Kohlbecker
02:26 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Katja Luther wrote:
> Andreas Müller wrote:
> > But first revert the already existing changes!!!
>
> It is alrea...
Andreas Müller
02:23 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Andreas Müller wrote:
> But first revert the already existing changes!!!
It is already reverted see Revision 6e57...
Katja Luther
02:00 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
But first revert the already existing changes!!! Andreas Müller
10:24 AM feature request #6041: Change the label of "Set as basionym of homotypical group"
This needs to be discussed in User Meeting, move it to Release 4.4 and decide then if we change it or not. Katja Luther
02:24 PM bug #6061 (Feedback): Add titlecache to nom author search
With the above example Aaaa/Bbbb I get the following exception when exactly searching for "*B".
Entering "*Bb" works...
Andreas Müller
01:51 PM Revision cdbf325e (cdmlib): ref #6066 fix Index out of bound exception
Andreas Müller
01:48 PM bug #6084 (Closed): NPE when opening the checklist editor with no areas selected in preferences
works fine Patrick Plitzner
01:44 PM Revision 92634d22 (taxeditor): ref #5616 Fix class check for bulk editor porperty tester
- handle UuidAndTitleClache Patrick Plitzner
12:23 PM Revision dd2c540b (cdmlib-apps): fix #6035 one more broken character
Andreas Kohlbecker
11:45 AM Revision dc4d1922 (cdmlib-apps): fix #6093 including more taxa into algea registry import
Andreas Kohlbecker
10:50 AM feature request #6066 (Feedback): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
10:49 AM feature request #6066: Edaphobase DTO for getChildrenTaxaOfId
Getestet unter http://test.e-taxonomy.eu/cdmserver/edaphobase_test/doc/?group=Generic%20REST%20API#!/taxon-node-contr... Andreas Müller
10:32 AM bug #5967: Adapt default update site to production update site.
This ticket is difficult to review before the release so we will do the review afterwards. Andreas Müller
10:13 AM bug #6082: Local managed server in Taxeditor fails during start
To be honest I am not sure which of the 3 changes was the crucial one and if they are all required.
I only remembe...
Andreas Müller
10:05 AM bug #6082 (Closed): Local managed server in Taxeditor fails during start
Yes this change actually fixes the problem. Howver, it is strange that it is necessary to explicitly name all jars in... Andreas Kohlbecker
10:11 AM bug #6099: Duration of save is increasing
the time consuming call is CdmStore.getService(ITaxonNodeService.class).merge(taxonNode, true);
Katja Luther
10:09 AM bug #6099 (Closed): Duration of save is increasing
Hallo Andreas,
also das Speicherns dauert nach Neuanlegen einer Common names bei Hieracium immer noch unerträglich...
Katja Luther

09/19/2016

10:14 PM bug #6082 (Resolved): Local managed server in Taxeditor fails during start
commit:taxeditor|ccf3875f seems to fix the problem.
Please check.
Andreas Müller
05:16 PM bug #6082 (Feedback): Local managed server in Taxeditor fails during start
The changes committed before did apparently not solve the problem.
The latest build made by jenkins still was having...
Andreas Kohlbecker
03:45 PM bug #6082 (Resolved): Local managed server in Taxeditor fails during start
Applied in changeset taxeditor:commit:taxeditor|09ab8026ce80a7f76ad3bc250f303aee986c3dab. Andreas Kohlbecker
03:44 PM bug #6082: Local managed server in Taxeditor fails during start
this seems to be caused by incomplete entries in the `eu.etaxonomy.taxeditor.webapp/build.properties` Andreas Kohlbecker
03:31 PM bug #6082: Local managed server in Taxeditor fails during start
This does not happen from within the IDE and the eu.etaxonomy.taxeditor.webapp_4.3.0.201609190837.jar of the lastets ... Andreas Kohlbecker
09:50 PM Revision ccf3875f (taxeditor): ref #6082 try to fix dependency issues in managed TaxEditor
Andreas Müller
03:45 PM Revision 09ab8026 (taxeditor): fix #6082 fixing incomplete entries in the eu.etaxonomy.taxeditor.webapp/build.properties
Andreas Kohlbecker
02:39 PM Revision cc330739 (taxeditor): i18n for view titles
Patrick Plitzner
02:39 PM Revision 18fd7dae (taxeditor): Generalize title creation for cdm view parts
Patrick Plitzner
02:39 PM Revision 93c6e0a8 (taxeditor): Compare taxon editor input based on taxon node instead of taxon
Patrick Plitzner
02:14 PM Revision 3c85c23f (cdmlib-apps): ref #6097 filter to include algae only - better match pattern
Andreas Kohlbecker
02:03 PM bug #6098 (New): Improve session handling for TaxonNavigator and newTaxonNodeWizard
related to #5607.
It looks like the reason is that the assistant is using the navigator session and the navigator...
Katja Luther
01:45 PM Revision 4ca412d5 (taxeditor): fix #5607: add sec reference to property path solves the problem of not reload the right sec reference
Katja Luther
01:33 PM bug #6087 (Feedback): Top level items not sorted in tree of advanced search areaFilter widget
Andreas Müller
01:33 PM bug #6087: Top level items not sorted in tree of advanced search areaFilter widget
The ordering is now alphabetic but not according to the ordering in the vocabular as written in the description (espe... Andreas Müller
01:33 PM Revision 6a1ec853 (cdmlib-apps): #6097 filter to include algae only
Andreas Kohlbecker
01:33 PM Revision 91b69818 (cdmlib-apps): moving TestDatabase back to main - a couple of classes had complie errors
Andreas Kohlbecker
01:22 PM Revision 2dab7ea0 (taxeditor): remove System.out.println...
Katja Luther
01:12 PM bug #6061 (Resolved): Add titlecache to nom author search
Applied in changeset cdmlib:commit:cdmlib|40dfdbc5479f32292017fadeca45b8424dda4896. Katja Luther
01:10 PM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Deduplication of equals caches looks good now.
>
> Search on titleCache does not yet work...
Katja Luther
01:06 PM bug #6061: Add titlecache to nom author search
Deduplication of equals caches looks good now.
Search on titleCache does not yet work. E.g. create a Person with n...
Andreas Müller
01:12 PM Revision 40dfdbc5 (cdmlib): fix #6061: search in titlecache and nomenclatural titleCache in getUuidAndAbbrevTitleCache
Katja Luther
01:08 PM bug #6056 (Resolved): Checklist Editor does not close session
Applied in changeset taxeditor:commit:taxeditor|bfc8d3b4b4853357b40551eca7a283ce68bbe865. Katja Luther
01:07 PM Revision bfc8d3b4 (taxeditor): fix #6056: when creating checklisteditorInput don't init session at the beginning, but at the end of constructor
Katja Luther
10:08 AM Revision c38ba443 (cdmlib): fix failing IPNI Service Test
Katja Luther
09:29 AM Revision 4764fee3 (cdmlib-apps): removing duplicate repository
Andreas Kohlbecker
08:19 AM Revision ceece5d1 (cdmlib-apps): Merge branch 'IAPT'
Conflicts:
app-import/.gitignore
app-import/pom.xml
Andreas Kohlbecker
08:16 AM Revision 67432178 (cdmlib-apps): move test classes in app-import
Andreas Müller

09/17/2016

07:52 AM Revision f26bf544 (cdmlib): revert tests
Andreas Müller
07:21 AM Revision 96377298 (cdmlib): Ignore service test
Andreas Müller
07:04 AM Revision 70052603 (cdmlib): ref #6072 test missing entity in webservice
Andreas Müller
12:27 AM Revision 30165a24 (cdmlib-apps): fix #6095 log duplicate registrations during import
Andreas Kohlbecker

09/16/2016

11:18 PM Revision 9f53e2a3 (cdmlib): ref #6072 test missing entity in webservice
Andreas Müller
10:35 PM Revision 34bb1837 (cdmlib): ref #6072 set defaults to false and hardcode includeEntity to true for debugging
Andreas Müller
09:11 PM Revision 39e5a6f0 (taxeditor): fix transientServices (2)
Andreas Müller
08:41 PM Revision b6d768b1 (taxeditor): fix transientService
Andreas Müller
07:56 PM Revision 67c1061b (cdmlib): ref #6072 fix signature issue in remote (2nd try)
Andreas Müller
07:31 PM Revision 395b33fe (cdmlib): ref #6072 fix signature issue in remote
Andreas Müller
07:03 PM Revision 35cc0406 (cdmlib): ref #6072 fix compilation issue in IIdentifiableEntityService
Andreas Müller
05:30 PM bug #6072 (Resolved): Implement getTaxonomicGroups for Edaphobase
Applied in changeset cdmlib:commit:cdmlib|65b68496361721de9312edbb53f02ecb2c77b12b. Andreas Müller
05:30 PM Revision 8e9785f0 (cdmlib): Cleanup
Andreas Müller
05:30 PM Revision 65b68496 (cdmlib): fix #6072 Implement findIdentifiableEntityByMarkers
Andreas Müller
05:20 PM Revision ac956ff7 (cdmlib-apps): fix #6094 importing 'registration' data into an Extension object
Andreas Kohlbecker
04:34 PM bug #5680: Out-of-Memory when editing TaxonInteraction
Katja Luther wrote:
> another problem with Families in other Floras:
>
>
> creation of a new Families in other ...
Katja Luther
11:35 AM bug #6056: Checklist Editor does not close session
I found the problem: When disposing the session, the session should be removed from the sessionManager, but the get(o... Katja Luther
11:13 AM Revision 73871c73 (cdmlib-apps): ref #6026 SpecimenType = FOSSIL for fossil taxa/names
Andreas Kohlbecker
08:19 AM Revision 046ccd06 (cdmlib-apps): ref #6026 more parser improvements and tests
Andreas Kohlbecker
12:43 AM Revision 60dffe1d (taxeditor): ref #6089 Fix not compiling operation
Andreas Müller
12:35 AM Revision 98941a6c (taxeditor): ref #6089 Fix failing test and transient service after taxonomicChildrenCount and taxonomicParentCache removal
Andreas Müller
12:29 AM Revision 8571c3d3 (taxeditor): Rename Checklist-Editor -> Distribution-Editor
Andreas Müller

09/15/2016

11:20 PM Revision 77ed5af2 (cdmlib): ref #6089 Remove failing irrelevant test
Andreas Müller
11:13 PM Revision b4db8cea (cdmlib-apps): move test classes in app-import
Andreas Müller
11:09 PM Revision 22abd4ac (cdmlib): ref #6089 Remove all calls and methods for taxonomicChildrenCount and taxonomicParentCache
Andreas Müller
11:08 PM task #6089 (In Progress): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Andreas Müller
11:08 PM task #6089 (Closed): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Andreas Müller
11:00 PM Revision aa66fec3 (cdmlib): Cleanup; Delete unnecessary test classes.
Andreas Müller
10:22 PM Revision 13ed824e (cdmlib-apps): ref #6026 more parser improvements and tests
Andreas Kohlbecker
06:13 PM feature request #6066 (Resolved): Edaphobase DTO for getChildrenTaxaOfId
Applied in changeset cdmlib:commit:cdmlib|a295b517875ed51a93997bf044543e04b8c2351a. Andreas Müller
06:13 PM Revision a295b517 (cdmlib): fix #6066 Implement doPageChildNodes with doSynonyms
Andreas Müller
06:08 PM Revision cecffedf (cdmlib): Clean up
Andreas Müller
06:04 PM Revision 971424cc (cdmlib): Adapt failing test in NonViralNameParserImplTest
Andreas Müller
05:51 PM Revision f4ce5055 (cdmlib-apps): ref #6026 improving specimenType parsers: better recognition of 'Coll. something' types
Andreas Kohlbecker
05:33 PM Revision 5e52d4ec (cdmlib-apps): ref #6026 solving problems in date and specimenType parsers, also implementing tests
Andreas Kohlbecker
04:52 PM bug #6088 (Closed): New reproducable multiple representations exception for name relationships
What I did:
* Goto name bulk editor and create 2 new names: *Related name One* and *Related name Two*.
* Make R...
Andreas Müller
03:33 PM Revision d74b5cdc (cdmlib): ref #6086 solving the problems in the java-script of the web application monitor widget:
- chunk information: number rounded and label renamed
- Percentage number rounding fixed
Andreas Kohlbecker
03:10 PM Revision 3273ef7c (cdmlib): ref #6086 fix failing test
Andreas Müller
02:40 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Can you please check if this fixes the problem? Andreas Müller
02:38 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Experience shows (see class DefaultProgressMonitorTest) that rounding errors mostly appear when SubProgressMonitors a... Andreas Müller
02:28 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Ceil is not the correct method, use round instead, otherwise the result is only rounded into one direction. Andreas Müller
11:55 AM bug #6086 (Closed): Percentage value in ProgressMonitor accuratly rounded
The percentage value on the progress of the indexing process is often reported as 99,99% when the job is completet.
...
Andreas Kohlbecker
02:27 PM Revision 6f59693f (cdmlib): rel #6086 Improve rounding for progress monitor
* fix error in rounding by using round not ceil
* add method for user defined scaled rounding
Andreas Müller
02:23 PM Revision 87348c2d (taxeditor): fix #5702: filter for current name in name details view if select new name
Katja Luther
02:21 PM Revision 504fc7ef (cdmlib): some cleanup
Andreas Müller
02:04 PM Revision ab85455e (cdmlib-apps): ref #6035 adding more character fixed and adding source referenence for all names
Andreas Kohlbecker
01:54 PM Revision 398b9c0f (taxeditor): ref #5837: if nomenclatural titleCache and titleCache are equal only one is shown in selection dialog
Katja Luther
01:26 PM bug #6061: Add titlecache to nom author search
now searching with * at the beginning of the search pattern searches on abbrevTitleCache and titleCache
Katja Luther
09:59 AM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > ... but the...
Katja Luther
09:25 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Search on titleCache with * at the beginning (additionally to the nom.title) still does not ...
Katja Luther
09:12 AM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > ... but the object already selected does...
Katja Luther
08:55 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Katja Luther wrote:
> > ... but the object already selected does not show up in the selecti...
Katja Luther
01:22 PM Revision d00e4ab1 (taxeditor): ref 6061: using * at the beginning of search pattern triggers a search on abbrevTitleCache and titleCache
Katja Luther
01:20 PM feature request #5969: Implement CdmPreference reading for database preferences
there was no check whether the preference is already in DB, now if the preference could not find in DB the local one ... Katja Luther
11:50 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences
When trying to open Preferences-Taxonomic-NomenclaturalCode I got an NPE:
~~~
login : admin
editor version : 4.3...
Andreas Müller
01:18 PM Revision 4625a011 (taxeditor): ref #5969: check if there is a NC preference in db if not use the local NC preference
Katja Luther
12:26 PM bug #6087 (Resolved): Top level items not sorted in tree of advanced search areaFilter widget
Applied in changeset commit:cdm-dataportal|fdf52d6a1031775b9ec229df88bb0a84ad54649a. Andreas Kohlbecker
12:24 PM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget

ich sehe gerade, dass zumindest bei Cuba http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/search die Areal...
Andreas Kohlbecker
12:26 PM Revision fdf52d6a (cdm-dataportal): fix #6087 areaFilter item sorting fixed
Andreas Kohlbecker
12:01 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
http://130.133.70.38/redmine/issues/226 still has status closed instead of rejected, though it was a won't fix (http... Andreas Müller
10:44 AM task #6029 (Feedback): trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
I implemented a repair script (attached).
Please can you (a.mueller) xcheck to confirm that the fix is working
...
Andreas Kohlbecker
11:53 AM Revision 288cde13 (taxeditor): fix #5874: display of infrageneric epithet are different for zoological and botanical names
Katja Luther
10:41 AM Revision 542640fa (cdmlib): fix #5837: search on abbrevTitleCache instead of abbrev title
Katja Luther
10:40 AM Revision d33f8978 (taxeditor): ref #6061: remove the current selection as filter in nomenclatural author selection dialog
Katja Luther
08:49 AM Revision 6e572e21 (taxeditor): ref #6041: revert the changes and wait for the decision of the user meeting
Katja Luther

09/14/2016

10:05 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
1. NOTE: This plugin seems not to support 'Bulk edit' :(
2. Updating the migration scripts
Andreas Kohlbecker
04:06 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
migration scripts are ready, see attachments Andreas Kohlbecker
05:52 PM bug #6054 (Closed): classification breadcrumb navigation broken in IE and MS Edge
I tested with IE11 on test with cuba and it works correctly. So I guess it is fixed. Andreas Müller
05:46 PM bug #6061: Add titlecache to nom author search
Search on titleCache with * at the beginning (additionally to the nom.title) still does not work. Is this difficult t... Andreas Müller
05:41 PM bug #6061: Add titlecache to nom author search
Ordering and dot search seem to work well now. Andreas Müller
05:40 PM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> ... but the object already selected does not show up in the selection dialog. This is the same...
Andreas Müller
05:35 PM bug #6061 (Feedback): Add titlecache to nom author search
If titleCache is same as nomTitle both versions are still shown. See note-#2 Andreas Müller
12:31 PM bug #6061: Add titlecache to nom author search
The ordering works now on the abbrev title and the search works for strings with a point at the end, but the object a... Katja Luther
05:11 PM bug #6085 (New): Use lucene auto suggest functionality for improved auto suggest
Check if lucene auto-suggest functionality can be used. Currently we only use standard freetext search which leads e.... Andreas Müller
05:11 PM Revision 1de87368 (cdmlib): correcting erroneous commit
Andreas Kohlbecker
04:59 PM feature request #5890: Implement auto-suggest for data portal
Andreas Müller wrote:
> Also I do not understand why the flag to switch on auto-completion is put to Settings - Gene...
Andreas Müller
04:21 PM feature request #5890: Implement auto-suggest for data portal
Also I do not understand why the flag to switch on auto-completion is put to Settings - General - CdmServer - FreeTex... Andreas Müller
04:18 PM feature request #5890 (Feedback): Implement auto-suggest for data portal
When trying to run on http://test.e-taxonomy.eu/dataportal/preview/flora-cuba/ and searching for "Barler" I got an po... Andreas Müller
03:42 PM Revision ff9da83e (taxeditor): Minor language correction
Andreas Müller
03:24 PM bug #6062: NPE in RefencingObjects for TaxonNameDescription
The NameDescription NPE is not thrown anymore but I would like to first wait until the regression in #5616 is fixed u... Andreas Müller
09:25 AM bug #6062 (Resolved): NPE in RefencingObjects for TaxonNameDescription
Applied in changeset taxeditor:commit:taxeditor|f3fb72fdaf40e993eeec1f606bfd88caeba06898. Patrick Plitzner
09:18 AM bug #6062: NPE in RefencingObjects for TaxonNameDescription
I could only reproduce the last mentioned NPE once because I had not selected any areas. After selecting areas I coul... Patrick Plitzner
08:04 AM bug #6062: NPE in RefencingObjects for TaxonNameDescription
I added a property tester to check if the item can be shown depending on whether or not there is a bulk editor for th... Patrick Plitzner
03:13 PM feature request #6059 (Closed): Save expand state more individually
Both seem to work fine, subsections as well as supplemental data view.
We may open new tickets for other views if ...
Andreas Müller
02:48 PM feature request #5616 (Feedback): Add the"Open in..." menu to taxon search
Now it does not offer bulkeditor at all anymore, not for pure names, not for orphaned taxa and not for ordinary taxa/... Andreas Müller
12:04 PM bug #6084 (Resolved): NPE when opening the checklist editor with no areas selected in preferences
Applied in changeset taxeditor:commit:taxeditor|6ac3c9c18cc95fd462d8e2ce82dcb0904cce7c6e.
the problem was the not ...
Katja Luther
09:14 AM bug #6084 (Closed): NPE when opening the checklist editor with no areas selected in preferences
You can reproduce this by deleting the preferences for the checklist editor in `.cdmLibrary/.metadata/.plugins/org.ec... Patrick Plitzner
12:04 PM Revision 6ac3c9c1 (taxeditor): fix #6084: check if areas are selected in preferences before open the distribution editor
Katja Luther
10:33 AM bug #6063: redmine inheritable issue categories
The latest patch inherit_cats_2.5.1.stable.13138.patch.gz can not be applied to the version 3.3.0 Andreas Kohlbecker
10:05 AM feature request #6076: Specimen biocase search should work on observations
... should work on all types of "RecordBasis" (wenn es um Importe oder Specimeneingaben geht, AlgaTerra hat z.B. Liv... Wolf-Henning Kusber
07:11 AM Revision f3fb72fd (taxeditor): fix #6062 Add property tester for "Open in..." bulk editor menu items
- moved isGroupEditor property test to bulk editor plugin Patrick Plitzner
07:07 AM Revision 75271240 (taxeditor): Trim code
Patrick Plitzner
06:28 AM Revision be092848 (taxeditor): Organize imports
Patrick Plitzner
 

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