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From 09/13/2016 to 10/12/2016

10/11/2016

06:09 PM task #6125 (New): Implement tests for OAuth2 in cdmlib-remote
The tests in spring-projects/spring-security-oauth samples/oauth2/sparklr project are a good start! Andreas Kohlbecker
03:35 PM bug #5948 (Resolved): supress protologue icon if according media uri is missing
Applied in changeset cdm-dataportal:commit:cdm-dataportal|275b2642c2438013cb1ac06bb986dceb388592d7. Andreas Kohlbecker
01:36 PM bug #5948 (In Progress): supress protologue icon if according media uri is missing
Andreas Kohlbecker
01:36 PM bug #5948 (Rejected): supress protologue icon if according media uri is missing
Andreas Kohlbecker
02:22 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Whatever solution we choose please cover it with an according test. Andreas Müller
02:19 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> Katja Luther wrote:
> I don't want to change the readonly=false, but maybe it is possible to ...
Andreas Müller
12:22 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > The problem seems to be that we have to ...
Katja Luther
11:58 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Andreas Müller wrote:
> Katja Luther wrote:
> > The problem seems to be that we have to use the @transactional(read...
Katja Luther
11:43 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
Katja Luther wrote:
> The problem seems to be that we have to use the @transactional(readonly=false) and this means ...
Andreas Müller
11:30 AM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
The problem seems to be that we have to use the @transactional(readonly=false) and this means that the commit is call... Katja Luther
01:25 PM feature request #6110: Use https for map service calls when the portal is access via https
This needs to be tested at the edit-test server. The following requirements need to be fulfilled for testing:
* po...
Andreas Kohlbecker
01:22 PM feature request #6110 (Resolved): Use https for map service calls when the portal is access via https
Applied in changeset commit:cdm-dataportal|7aeb752750a73e9a99fa20b4c3e932aae49a2a94. Andreas Kohlbecker
10:04 AM task #6118: evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
updating development test script to latest implementation Andreas Kohlbecker

10/10/2016

10:39 PM task #6118: evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
Adding shell script to test different authentication modes. Andreas Kohlbecker

10/09/2016

04:16 PM bug #6119 (Resolved): Implement uuidAndTitleCache remote services
Andreas Müller
04:13 PM bug #6119 (In Progress): Implement uuidAndTitleCache remote services
Andreas Müller

10/07/2016

07:10 PM task #3547 (In Progress): Remove size of test data where possible
Andreas Müller
03:35 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
This is the same for taxa and names. Katja Luther
03:27 PM bug #3658 (In Progress): Update Nomenclatural code for datasources
Andreas Müller
03:08 PM bug #5888: Deleting factual data does not work (dirty flag not set)
the description needs to be passed to the postExecute method, this triggers the dirty flag. Katja Luther
03:04 PM bug #5888 (Resolved): Deleting factual data does not work (dirty flag not set)
Applied in changeset taxeditor:commit:taxeditor|a3e69a37383c07c575a7592c1093f68dcc6e830a. Katja Luther
12:27 PM bug #5832: It is not possible to search for hybrids in taxon search
This is because hybrids do not have a namecache and the search works on the nameCache. Katja Luther
11:22 AM task #6089 (Resolved): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Applied in changeset cdmlib:commit:cdmlib|30451d3cd027497576ee106c435c62d4b5021e9a. Andreas Müller
11:13 AM bug #6120: Cleanup uuidAndTitleCache methods
Applied in changeset cdmlib:commit:cdmlib|c6af6a3d58f8fa0ec2a803f8651b8acd04139fde. Andreas Müller
11:13 AM bug #6072: Implement getTaxonomicGroups for Edaphobase
Applied in changeset cdmlib:commit:cdmlib|1e8a54ffa558ce07fa340c307d6ec447a8f66d40. Andreas Müller

10/06/2016

03:23 PM bug #6121: NPE during portal web service requests that go through BaseController.doGetMethod()
Be aware that the edaphobase uuids are not yet stable Andreas Müller
01:21 PM bug #6121 (Worksforme): NPE during portal web service requests that go through BaseController.doGetMethod()

For example:
http://api.cybertaxonomy.org/edaphobase/portal/taxon/a032b2bc-84dd-44d5-a149-57a3e23da605/sec.json
...
Andreas Kohlbecker
02:24 PM bug #6122 (Resolved): add titleCache service
Applied in changeset commit:cdmlib|3dfc49ed20bbef8f573798864ced75424f892470. Andreas Müller
02:21 PM bug #6122 (Closed): add titleCache service
We need a service that returns only the titleCache for a given uuid.
By default it returns the titleCache as store...
Andreas Müller
01:00 PM bug #6120: Cleanup uuidAndTitleCache methods
Andreas Müller wrote:
> Please also check the code if you think it is reasonable
In TaxonBaseSelectionDialog it n...
Katja Luther
12:50 PM bug #6120: Cleanup uuidAndTitleCache methods
Please also check the code if you think it is reasonable Andreas Müller
12:37 PM bug #6120 (Resolved): Cleanup uuidAndTitleCache methods
Applied in changeset cdmlib:commit:cdmlib|8d6c8a12abe82836eae03eab6a43b3cdea6d26df. Andreas Müller
12:35 PM bug #6120 (Closed): Cleanup uuidAndTitleCache methods
In TaxonService we have 2 methods getUuidAndTitleCacheTaxon and getUuidAndTitleCacheSynonym. They could be merged int... Andreas Müller
11:51 AM bug #6119 (Closed): Implement uuidAndTitleCache remote services
Andreas Müller

10/05/2016

02:27 PM bug #5854 (Worksforme): Deleting terms has no effect
the deletion already works and the lists of terms are refereshed correctly. Katja Luther
02:17 PM bug #6056 (Closed): Checklist Editor does not close session
Katja Luther
01:18 PM task #6118 (In Progress): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
Andreas Kohlbecker
01:18 PM task #6118 (Closed): evaluate spring-security-auth2 and spring-cloud-security as a framework for OAuth2
[spring-security-oauth](http://projects.spring.io/spring-security-oauth) & [Spring-Cloud-Security](http://cloud.sprin... Andreas Kohlbecker
12:54 PM task #2055: Improve Article creation for nomenclatural references
needs time for discussion and consistency check with Berlin Model situation (see duplicating ticket) Andreas Müller
12:40 PM bug #5211 (Worksforme): Error when creating new taxon /problem with sortindex in taxon tree
Probably fixed with better handling for null values in merge. Andreas Müller
12:19 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Or even better solution, use DTOs on server side. Andreas Müller
12:11 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Maybe the problem is the label provider which initializes lazy objects. Which thread does it use? Andreas Müller
11:38 AM bug #5965 (In Progress): Check if authentication works correctly after datasource change
Andreas Müller
11:28 AM feature request #5972: Prevent user from unwanted author and reference updates
Decision: for id > 0 implement check for further references and inform the user in red about these references if they... Andreas Müller

10/04/2016

12:55 PM bug #6115: protect cdm content by drupal permission
Hi Andreas,
the review of this ticket need intensive testing. I suggest we use one of the published portals on the...
Andreas Kohlbecker
12:45 PM bug #6115 (Resolved): protect cdm content by drupal permission
Applied in changeset cdm-dataportal:commit:cdm-dataportal|c6fe437bfe330b2aa1cc96d32d956edfc14f8b19. Andreas Kohlbecker
12:50 PM bug #6062 (Closed): NPE in RefencingObjects for TaxonNameDescription
Though #5616 is not yet fully fixed I think we can close this ticket now. Andreas Müller
12:45 PM feature request #5616: Add the"Open in..." menu to taxon search
The first issue seems to be fixed.
Handling of orphaned taxa still does not work (neither the icon nor the right c...
Andreas Müller
12:21 PM feature request #5969: Implement CdmPreference reading for database preferences
I added a remark that that the preference is stored in db and a check whether the editor is already connected to a da... Katja Luther
11:28 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences
Katja Luther wrote:
> In Revision 4625a011 a check for the existence of the preference in DB is added.
This does ...
Andreas Müller
11:53 AM bug #5967 (Feedback): Adapt default update site to production update site.
If no entry exists in eu.etaxonomy.taxeditor.store.prefs everything works as expected as far as I can see. Meaning, t... Andreas Müller
11:17 AM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget
Seems to work well. Related issue about layout of filter in new ticket: #6116 Andreas Müller
11:12 AM bug #6116 (New): Advanced Search area filter layout needs to be improved
The new resizable version of the area filter looks much better already.
But 2 issues need to be solved.
1) If >...
Andreas Müller

09/29/2016

06:40 PM bug #6115 (Closed): protect cdm content by drupal permission
A couple of portals are currently in maintenance mode because the taxa and names must not be disclosed to the public.... Andreas Kohlbecker
06:09 PM bug #6114 (Resolved): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
Applied in changeset cdm-dataportal:commit:cdm-dataportal|7a751db42d606dc2662560f6a7e19bab6896fe8b. Andreas Kohlbecker
05:24 PM bug #6114 (Closed): Regression of #4379: Citations only consist of footnotes if bibliography block is enabled
For details see #4379
This currently affects the FaunaEuropaea project!
Andreas Kohlbecker
04:30 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Conclusion of the discussion:
* The current functionality can not simply be relabeled
* The current functionality...
Andreas Müller
02:07 PM bug #2957: running maven site:site for Taxonomic Editor fails
This is broken since **4 Years**. Who can take care for this ticket? Andreas Kohlbecker
11:01 AM feature request #6113 (Closed): webservice to expose FieldUnits related to a Taxon or TaxonName as KML and/or GML

KML 2.2 : https://portal.ogc.org/files/?artifact_id=27810
potentially helpful libraries:
* https://github.com...
Andreas Kohlbecker
10:57 AM bug #3226: openlayers map google baselayers: api keys rejected
this is easy to fix Andreas Kohlbecker

09/27/2016

01:26 PM bug #6111 (Closed): invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list()
The Specimens Table in the chichorieae portal is no longer working due to a bug in the `CdmEntityDaoBase.list()` meth... Andreas Kohlbecker

09/26/2016

05:25 PM feature request #6110 (Closed): Use https for map service calls when the portal is access via https
Andreas Kohlbecker
03:17 PM feature request #6076: Specimen biocase search should work on observations
The specimen search works only for preserved specimen, but should return all kind of specimen.
Therefore the filte...
Katja Luther
01:33 PM feature request #6076 (In Progress): Specimen biocase search should work on observations
Please add some more information what it is all about. Andreas Müller
02:38 PM feature request #5969 (Resolved): Implement CdmPreference reading for database preferences
In Revision 4625a011 a check for the existence of the preference in DB is added. Katja Luther
01:48 PM bug #6051: Add toggle button for simple details view for names
try to synchronize with same issue in media view Andreas Müller
01:13 PM bug #4348: Remove InputDialog in creating new bulk editor entities where not needed
Explain solution with wizards and create new tickets for all required wizards. Andreas Müller
12:18 PM feature request #5185 (Worksforme): drag & drop for descriptions and descriptionElements
Drag & drop works fine. But after creating a new Description you have to save before move a descriptionelement to the... Katja Luther
10:15 AM feature request #5185: drag & drop for descriptions and descriptionElements
Is this still open. Adapt target version if closed. Andreas Müller
12:17 PM bug #6109 (Worksforme): Drag & Drop after creating a new description fails
When creating a new description and try to move a description element to this new description without saving throws t... Katja Luther
10:36 AM bug #6042: Campanula portal TODOS
Please create sub tasks and add mails as comments Andreas Müller
10:24 AM bug #6077 (Resolved): Import of gathering images
Andreas Müller
09:39 AM bug #6088: New reproducable multiple representations exception for name relationships
I think I could find when this exception occurs: Always when using a name already opened in bulk editor to create the... Katja Luther

09/23/2016

03:20 PM feature request #6066 (Closed): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
02:00 PM feature request #6066 (Resolved): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
02:00 PM feature request #6066: Edaphobase DTO for getChildrenTaxaOfId
New version in classification controller:
http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5d...
Andreas Müller
03:16 PM bug #6073 (Closed): Fix groupByHigherTaxon webservice
Andreas Müller
02:52 PM bug #6071 (In Progress): Handle Taxonomische Großgruppen correctly in Edaphobase
Offen:
~~Import~~
Evtl. Offen:
... ~~und danach soll eine Liste von Taxa gruppiert werden können~~
Andreas Müller
02:41 PM bug #6072: Implement getTaxonomicGroups for Edaphobase
Open issue: handle includeEntity correctly Andreas Müller
02:40 PM bug #6072: Implement getTaxonomicGroups for Edaphobase
This has been solved by implementing findByMarker similar to findByIdentifier.
Example:
http://test.e-taxonomy...
Andreas Müller
12:16 PM feature request #6065 (Resolved): Edaphobase DTO for getTaxonById
Still to test: fehlerhafte UUIDs sollten zu 404 (Reseource not found) Fehler führen. Andreas Müller
12:14 PM feature request #6065: Edaphobase DTO for getTaxonById
Examples:
Taxon with child and synonym:
http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5...
Andreas Müller

09/22/2016

11:27 AM bug #6108 (New): Too many columns exception when selecting TDWG areas in distribution editor
~~~
Sep 22, 2016 11:26:11 AM com.vaadin.data.util.sqlcontainer.SQLContainer getPropertyIds
Warnung: Failed to fetch...
Patrick Plitzner

09/21/2016

03:19 PM task #6107 (New): Establish performance monitoring
The suggestions given in https://www.infoq.com/articles/Diagnose-Microservice-Performance-Anti-Patterns could help us... Andreas Kohlbecker
01:07 PM feature request #5890: Implement auto-suggest for data portal
Added "Experimental" to settings description
Should we move this feature to 4.4?
Patrick Plitzner
01:03 PM feature request #5969: Implement CdmPreference reading for database preferences
If no datasource is selected an NPE occurs:
~~~
login :
editor version : 4.3.0.201609201350
server : /
sche...
Andreas Müller
12:05 PM feature request #5969: Implement CdmPreference reading for database preferences
The implementation in the local preferences UI works well now and I think we can close the ticket.
But maybe we ca...
Andreas Müller
12:04 PM bug #6106 (Closed): [Discuss] Handle rights and roles for CdmPreferences
Currently every user can change CdmPreferences.
Do we need a new role "CdmPreferenceAdmin" or should the right be ...
Andreas Müller
11:45 AM bug #6086 (Closed): Percentage value in ProgressMonitor accuratly rounded
This seems to be fully solved. Andreas Kohlbecker
11:30 AM bug #6105 (Closed): Make CdmPreferences editable in separate view
We started editing CdmPreferences in #5969. This is experimental as the UI mixes local preferences with CdmPreference... Andreas Müller
11:30 AM feature request #6037 (Rejected): Allow intermediate commits in Excel import
This would be nice to have but did not work after the initial implementation, solving the errors seems not worth it. ... Andreas Kohlbecker
09:39 AM bug #6061 (Closed): Add titlecache to nom author search
Katja Luther
09:37 AM bug #6061 (Resolved): Add titlecache to nom author search
Applied in changeset taxeditor:commit:taxeditor|28027bed8148feb8c9a3cfdbd7e203e62ad51733. Katja Luther
09:32 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> With the above example Aaaa/Bbbb I get the following exception when exactly searching for "*...
Katja Luther

09/20/2016

11:46 PM bug #6019 (Closed): Link to changeset does not work yet
this works now in the production version Andreas Kohlbecker
11:44 PM task #6006 (Closed): setup automatic refresh of repositories in Redmine
No problems so far, the refresh works for all configured repos. Andreas Kohlbecker
11:41 PM bug #6104 (New): install gitolite
The git repos need an access control and a general management layer.
Gitolite seems to be the best choice: http://...
Andreas Kohlbecker
06:41 PM bug #6100: Name parser problems
Hallo Andreas,
korrekter Sonderfall des Brummitt & Powell Standard:
Da R.Br. 3x vorhanden ist, ist der erste R....
Andreas Kohlbecker
12:55 PM bug #6100 (In Progress): Name parser problems
When running the IAPT import (#6026) a lot of names can not be parsed.
For a better overview I split the affected...
Andreas Kohlbecker
06:36 PM task #6020 (Feedback): Consider replacing custom field 'keywords' by redmine_tags
could you do the xcheck once again? Andreas Kohlbecker
06:35 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
This is fixed now. Andreas Kohlbecker
05:53 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
Da scheint es leider noch Probleme zu geben.
2 Beispiele: http://130.133.70.38/redmine/issues/1420 sollte Tags Fa...
Andreas Kohlbecker
05:50 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
problem solved in awk script
please test again.
Andreas Kohlbecker
05:18 PM bug #6087: Top level items not sorted in tree of advanced search areaFilter widget
Please test again. All remaining issues are solved. Andreas Kohlbecker
05:17 PM bug #6087 (Resolved): Top level items not sorted in tree of advanced search areaFilter widget
Applied in changeset commit:cdm-dataportal|c079337e19b7aa2b7e23a64a78da5085b92029ee. Andreas Kohlbecker
04:59 PM feature request #5616: Add the"Open in..." menu to taxon search
Andreas Müller wrote:
> Better now but still some issues:
>
> * For pure names (not related to taxa) the right cl...
Patrick Plitzner
04:29 PM feature request #5616: Add the"Open in..." menu to taxon search
Better now but still some issues:
* For pure names (not related to taxa) the right click menu does not show up at ...
Andreas Müller
01:45 PM feature request #5616: Add the"Open in..." menu to taxon search
Fixed in taxeditor:commit:taxeditor|92634d22a080f6de8af639dae12fe771cda64ceb Patrick Plitzner
04:00 PM feature request #6103 (New): Refactor name editor to be based on taxon nodes
Currently the TaxonEditorInput and the name editor are based on taxa. The editor input already stores the taxon node ... Patrick Plitzner
03:45 PM discussion #1410: DISCUSS - CDM product names
CDM Data Portal:
In the documentation, I just use data portal to refer to the connected Drupal instance as a whole (...
Walter Berendsohn
03:41 PM discussion #1410: DISCUSS - CDM product names
Taxonomic Editor:
For the Documentation, I had changed the designation "EDITor" to "TaxEditor. However, in the user ...
Walter Berendsohn
02:49 PM bug #6101 (Resolved): NPE when having multiple lanugage support disabled
Applied in changeset taxeditor:commit:taxeditor|db09bbf4cace84076e5fadb241440655b734827f. Katja Luther
02:11 PM bug #6101 (Closed): NPE when having multiple lanugage support disabled
This happens when doing a right-click in the feature term editor
Some GUI elements are not initialised when multi ...
Patrick Plitzner
02:30 PM feature request #6102 (New): advanced taxon search offers filter on distribution status
successor of #4497
The area filter in the advanced search needs to be complemented with a filter for the distribut...
Andreas Kohlbecker
02:26 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Katja Luther wrote:
> Andreas Müller wrote:
> > But first revert the already existing changes!!!
>
> It is alrea...
Andreas Müller
02:23 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Andreas Müller wrote:
> But first revert the already existing changes!!!
It is already reverted see Revision 6e57...
Katja Luther
02:00 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
But first revert the already existing changes!!! Andreas Müller
10:24 AM feature request #6041: Change the label of "Set as basionym of homotypical group"
This needs to be discussed in User Meeting, move it to Release 4.4 and decide then if we change it or not. Katja Luther
02:24 PM bug #6061 (Feedback): Add titlecache to nom author search
With the above example Aaaa/Bbbb I get the following exception when exactly searching for "*B".
Entering "*Bb" works...
Andreas Müller
01:48 PM bug #6084 (Closed): NPE when opening the checklist editor with no areas selected in preferences
works fine Patrick Plitzner
10:50 AM feature request #6066 (Feedback): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
10:49 AM feature request #6066: Edaphobase DTO for getChildrenTaxaOfId
Getestet unter http://test.e-taxonomy.eu/cdmserver/edaphobase_test/doc/?group=Generic%20REST%20API#!/taxon-node-contr... Andreas Müller
10:32 AM bug #5967: Adapt default update site to production update site.
This ticket is difficult to review before the release so we will do the review afterwards. Andreas Müller
10:13 AM bug #6082: Local managed server in Taxeditor fails during start
To be honest I am not sure which of the 3 changes was the crucial one and if they are all required.
I only remembe...
Andreas Müller
10:05 AM bug #6082 (Closed): Local managed server in Taxeditor fails during start
Yes this change actually fixes the problem. Howver, it is strange that it is necessary to explicitly name all jars in... Andreas Kohlbecker
10:11 AM bug #6099: Duration of save is increasing
the time consuming call is CdmStore.getService(ITaxonNodeService.class).merge(taxonNode, true);
Katja Luther
10:09 AM bug #6099 (Closed): Duration of save is increasing
Hallo Andreas,
also das Speicherns dauert nach Neuanlegen einer Common names bei Hieracium immer noch unerträglich...
Katja Luther

09/19/2016

10:14 PM bug #6082 (Resolved): Local managed server in Taxeditor fails during start
commit:taxeditor|ccf3875f seems to fix the problem.
Please check.
Andreas Müller
05:16 PM bug #6082 (Feedback): Local managed server in Taxeditor fails during start
The changes committed before did apparently not solve the problem.
The latest build made by jenkins still was having...
Andreas Kohlbecker
03:45 PM bug #6082 (Resolved): Local managed server in Taxeditor fails during start
Applied in changeset taxeditor:commit:taxeditor|09ab8026ce80a7f76ad3bc250f303aee986c3dab. Andreas Kohlbecker
03:44 PM bug #6082: Local managed server in Taxeditor fails during start
this seems to be caused by incomplete entries in the `eu.etaxonomy.taxeditor.webapp/build.properties` Andreas Kohlbecker
03:31 PM bug #6082: Local managed server in Taxeditor fails during start
This does not happen from within the IDE and the eu.etaxonomy.taxeditor.webapp_4.3.0.201609190837.jar of the lastets ... Andreas Kohlbecker
02:03 PM bug #6098 (New): Improve session handling for TaxonNavigator and newTaxonNodeWizard
related to #5607.
It looks like the reason is that the assistant is using the navigator session and the navigator...
Katja Luther
01:33 PM bug #6087 (Feedback): Top level items not sorted in tree of advanced search areaFilter widget
Andreas Müller
01:33 PM bug #6087: Top level items not sorted in tree of advanced search areaFilter widget
The ordering is now alphabetic but not according to the ordering in the vocabular as written in the description (espe... Andreas Müller
01:12 PM bug #6061 (Resolved): Add titlecache to nom author search
Applied in changeset cdmlib:commit:cdmlib|40dfdbc5479f32292017fadeca45b8424dda4896. Katja Luther
01:10 PM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Deduplication of equals caches looks good now.
>
> Search on titleCache does not yet work...
Katja Luther
01:06 PM bug #6061: Add titlecache to nom author search
Deduplication of equals caches looks good now.
Search on titleCache does not yet work. E.g. create a Person with n...
Andreas Müller
01:08 PM bug #6056 (Resolved): Checklist Editor does not close session
Applied in changeset taxeditor:commit:taxeditor|bfc8d3b4b4853357b40551eca7a283ce68bbe865. Katja Luther

09/16/2016

05:30 PM bug #6072 (Resolved): Implement getTaxonomicGroups for Edaphobase
Applied in changeset cdmlib:commit:cdmlib|65b68496361721de9312edbb53f02ecb2c77b12b. Andreas Müller
04:34 PM bug #5680: Out-of-Memory when editing TaxonInteraction
Katja Luther wrote:
> another problem with Families in other Floras:
>
>
> creation of a new Families in other ...
Katja Luther
11:35 AM bug #6056: Checklist Editor does not close session
I found the problem: When disposing the session, the session should be removed from the sessionManager, but the get(o... Katja Luther

09/15/2016

11:08 PM task #6089 (In Progress): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Andreas Müller
11:08 PM task #6089 (Closed): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Andreas Müller
06:13 PM feature request #6066 (Resolved): Edaphobase DTO for getChildrenTaxaOfId
Applied in changeset cdmlib:commit:cdmlib|a295b517875ed51a93997bf044543e04b8c2351a. Andreas Müller
04:52 PM bug #6088 (Closed): New reproducable multiple representations exception for name relationships
What I did:
* Goto name bulk editor and create 2 new names: *Related name One* and *Related name Two*.
* Make R...
Andreas Müller
02:40 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Can you please check if this fixes the problem? Andreas Müller
02:38 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Experience shows (see class DefaultProgressMonitorTest) that rounding errors mostly appear when SubProgressMonitors a... Andreas Müller
02:28 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Ceil is not the correct method, use round instead, otherwise the result is only rounded into one direction. Andreas Müller
11:55 AM bug #6086 (Closed): Percentage value in ProgressMonitor accuratly rounded
The percentage value on the progress of the indexing process is often reported as 99,99% when the job is completet.
...
Andreas Kohlbecker
01:26 PM bug #6061: Add titlecache to nom author search
now searching with * at the beginning of the search pattern searches on abbrevTitleCache and titleCache
Katja Luther
09:59 AM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > ... but the...
Katja Luther
09:25 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Search on titleCache with * at the beginning (additionally to the nom.title) still does not ...
Katja Luther
09:12 AM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > ... but the object already selected does...
Katja Luther
08:55 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Katja Luther wrote:
> > ... but the object already selected does not show up in the selecti...
Katja Luther
01:20 PM feature request #5969: Implement CdmPreference reading for database preferences
there was no check whether the preference is already in DB, now if the preference could not find in DB the local one ... Katja Luther
11:50 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences
When trying to open Preferences-Taxonomic-NomenclaturalCode I got an NPE:
~~~
login : admin
editor version : 4.3...
Andreas Müller
12:26 PM bug #6087 (Resolved): Top level items not sorted in tree of advanced search areaFilter widget
Applied in changeset commit:cdm-dataportal|fdf52d6a1031775b9ec229df88bb0a84ad54649a. Andreas Kohlbecker
12:24 PM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget

ich sehe gerade, dass zumindest bei Cuba http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/search die Areal...
Andreas Kohlbecker
12:01 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
http://130.133.70.38/redmine/issues/226 still has status closed instead of rejected, though it was a won't fix (http... Andreas Müller
10:44 AM task #6029 (Feedback): trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
I implemented a repair script (attached).
Please can you (a.mueller) xcheck to confirm that the fix is working
...
Andreas Kohlbecker

09/14/2016

10:05 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
1. NOTE: This plugin seems not to support 'Bulk edit' :(
2. Updating the migration scripts
Andreas Kohlbecker
04:06 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
migration scripts are ready, see attachments Andreas Kohlbecker
05:52 PM bug #6054 (Closed): classification breadcrumb navigation broken in IE and MS Edge
I tested with IE11 on test with cuba and it works correctly. So I guess it is fixed. Andreas Müller
05:46 PM bug #6061: Add titlecache to nom author search
Search on titleCache with * at the beginning (additionally to the nom.title) still does not work. Is this difficult t... Andreas Müller
05:41 PM bug #6061: Add titlecache to nom author search
Ordering and dot search seem to work well now. Andreas Müller
05:40 PM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> ... but the object already selected does not show up in the selection dialog. This is the same...
Andreas Müller
05:35 PM bug #6061 (Feedback): Add titlecache to nom author search
If titleCache is same as nomTitle both versions are still shown. See note-#2 Andreas Müller
12:31 PM bug #6061: Add titlecache to nom author search
The ordering works now on the abbrev title and the search works for strings with a point at the end, but the object a... Katja Luther
05:11 PM bug #6085 (New): Use lucene auto suggest functionality for improved auto suggest
Check if lucene auto-suggest functionality can be used. Currently we only use standard freetext search which leads e.... Andreas Müller
04:59 PM feature request #5890: Implement auto-suggest for data portal
Andreas Müller wrote:
> Also I do not understand why the flag to switch on auto-completion is put to Settings - Gene...
Andreas Müller
04:21 PM feature request #5890: Implement auto-suggest for data portal
Also I do not understand why the flag to switch on auto-completion is put to Settings - General - CdmServer - FreeTex... Andreas Müller
04:18 PM feature request #5890 (Feedback): Implement auto-suggest for data portal
When trying to run on http://test.e-taxonomy.eu/dataportal/preview/flora-cuba/ and searching for "Barler" I got an po... Andreas Müller
03:24 PM bug #6062: NPE in RefencingObjects for TaxonNameDescription
The NameDescription NPE is not thrown anymore but I would like to first wait until the regression in #5616 is fixed u... Andreas Müller
09:25 AM bug #6062 (Resolved): NPE in RefencingObjects for TaxonNameDescription
Applied in changeset taxeditor:commit:taxeditor|f3fb72fdaf40e993eeec1f606bfd88caeba06898. Patrick Plitzner
09:18 AM bug #6062: NPE in RefencingObjects for TaxonNameDescription
I could only reproduce the last mentioned NPE once because I had not selected any areas. After selecting areas I coul... Patrick Plitzner
08:04 AM bug #6062: NPE in RefencingObjects for TaxonNameDescription
I added a property tester to check if the item can be shown depending on whether or not there is a bulk editor for th... Patrick Plitzner
03:13 PM feature request #6059 (Closed): Save expand state more individually
Both seem to work fine, subsections as well as supplemental data view.
We may open new tickets for other views if ...
Andreas Müller
02:48 PM feature request #5616 (Feedback): Add the"Open in..." menu to taxon search
Now it does not offer bulkeditor at all anymore, not for pure names, not for orphaned taxa and not for ordinary taxa/... Andreas Müller
12:04 PM bug #6084 (Resolved): NPE when opening the checklist editor with no areas selected in preferences
Applied in changeset taxeditor:commit:taxeditor|6ac3c9c18cc95fd462d8e2ce82dcb0904cce7c6e.
the problem was the not ...
Katja Luther
09:14 AM bug #6084 (Closed): NPE when opening the checklist editor with no areas selected in preferences
You can reproduce this by deleting the preferences for the checklist editor in `.cdmLibrary/.metadata/.plugins/org.ec... Patrick Plitzner
10:33 AM bug #6063: redmine inheritable issue categories
The latest patch inherit_cats_2.5.1.stable.13138.patch.gz can not be applied to the version 3.3.0 Andreas Kohlbecker
10:05 AM feature request #6076: Specimen biocase search should work on observations
... should work on all types of "RecordBasis" (wenn es um Importe oder Specimeneingaben geht, AlgaTerra hat z.B. Liv... Wolf-Henning Kusber

09/13/2016

06:43 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
During installation, more specifically at `bundle install` the following information is printed out.
This might be i...
Andreas Kohlbecker
04:25 PM bug #6082 (Closed): Local managed server in Taxeditor fails during start

~~~~
login :
editor version : 4.3.0.201609131149
server : /
schema version :
os : Linux 3.19.0-59-generi...
Andreas Kohlbecker
04:17 PM bug #6075: harmonize ' Enable auto-suggest' option with existing code
Sorry I confused this setting, it is on the taxon search fields.
I am correcting the issue description ...
Andreas Kohlbecker
01:54 PM bug #6075 (Closed): harmonize ' Enable auto-suggest' option with existing code
# 1)
The `[] Enable auto-suggest for taxon search` is currently in the freetext index settings.
This option sh...
Andreas Kohlbecker
03:37 PM bug #6062 (In Progress): NPE in RefencingObjects for TaxonNameDescription
Patrick Plitzner
03:23 PM feature request #6081 (New): [Specimen Search] Import report should be saved
The import report should be saved on an accessible place. So the user can reproduce what was imported correctly and w... Katja Luther
03:20 PM feature request #6080 (New): [Specimen Search] TitleCache should be configurable
It should be possible to configure the order and the content of the titlecache Katja Luther
03:17 PM bug #6079 (New): [Specimen Search] Restructure the table of search result
The table should be restructured:
- the protocol is not needed
- important are scientific name, catalogue number, l...
Katja Luther
03:09 PM bug #6078 (Resolved): import of references in specimen search
The import of references are missing in GBIF and biocase import Katja Luther
03:07 PM bug #6077 (Closed): Import of gathering images
The gathering images are imported if the import comes from a bioase provider, for a Darwin Core Archive provider it d... Katja Luther
03:05 PM feature request #6076 (Closed): Specimen biocase search should work on observations
Actually the specimen biocase search only works on Specimen, it should also search for observations. Katja Luther
01:48 PM feature request #5969 (Resolved): Implement CdmPreference reading for database preferences
first implementation added.
Katja Luther
01:35 PM feature request #5616 (Resolved): Add the"Open in..." menu to taxon search
Applied in changeset taxeditor:commit:taxeditor|30afcea01068a7e0dcd2bde6b9a5f28e4bbcdd6f. Patrick Plitzner
12:55 PM bug #6054: classification breadcrumb navigation broken in IE and MS Edge
Please can you confirm that this is fixed? Andreas Kohlbecker
12:47 PM bug #6054 (Resolved): classification breadcrumb navigation broken in IE and MS Edge
Applied in changeset commit:cdm-dataportal|09edee9ae258bebe52d37c98f000257c365a8768. Andreas Kohlbecker
11:37 AM feature request #3573 (In Progress): Improve EDITOR import UI configuration panel
Patrick Plitzner
11:28 AM feature request #6059 (Resolved): Save expand state more individually
Applied in changeset taxeditor:commit:taxeditor|38eaa3c8c34ceeb65e29b7647a4bba1696e7ed4e. Patrick Plitzner
10:13 AM feature request #6059 (In Progress): Save expand state more individually
Patrick Plitzner
10:38 AM task #6074 (New): test for the name catalogue service
the name catalogue has failed in the past an no one noticed it: #5860
We already have tests for the catalogue (htt...
Andreas Kohlbecker
10:28 AM bug #6057 (Closed): Name parser fails parsing author names with ` U+0060 GRAVE ACCENT
this works now. Thank you! Andreas Kohlbecker
10:26 AM bug #6060 (Closed): Name parser fails parsing author names with - U+002D HYPHEN-MINUS
this works now. Thank you. Andreas Kohlbecker
 

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