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From 09/08/2016 to 10/07/2016

10/07/2016

07:10 PM task #3547 (In Progress): Remove size of test data where possible
Andreas Müller
07:06 PM Revision d5d3fb6e (cdmlib): ref #3547 remove testDelete-result1 and cleanup and reuse testDelete-...
Andreas Müller
06:30 PM Revision 52ee385e (cdmlib): ref #3547 Cleanup TaxonDaoHibernateImplTest.xml
Andreas Müller
04:56 PM Revision 77cb7459 (cdmlib): ref #3547 fix related tests
Andreas Müller
04:06 PM Revision 9a3490b1 (cdmlib): ref #3547 Cleanup TaxonDao.testGetTaxaByNameAndArea.xml test data a bit
Andreas Müller
03:46 PM Revision 8831fc56 (cdmlib): ref #3547 Cleanup TaxonDao.testFindDeleted test data
Andreas Müller
03:35 PM bug #5692: Delete a person within the bulk editor deletes the person even if not saved
This is the same for taxa and names. Katja Luther
03:30 PM Revision 58c5052a (cdmlib): ref #3547 Cleanup TaxonDao.testFind test data
Andreas Müller
03:27 PM bug #3658 (In Progress): Update Nomenclatural code for datasources
Andreas Müller
03:11 PM Revision 683f6ce0 (cdmlib): ref #5972: add method to count referencing objects
Katja Luther
03:08 PM bug #5888: Deleting factual data does not work (dirty flag not set)
the description needs to be passed to the postExecute method, this triggers the dirty flag. Katja Luther
03:04 PM bug #5888 (Resolved): Deleting factual data does not work (dirty flag not set)
Applied in changeset taxeditor:commit:taxeditor|a3e69a37383c07c575a7592c1093f68dcc6e830a. Katja Luther
03:06 PM Revision ed506dcb (cdmlib): fix #6089 Remove taxonomicParentCache and taxonomicChildrenCount, fix...
Andreas Müller
03:03 PM Revision a3e69a37 (taxeditor): fix #5888: add the element as argument to postExecute method s
Katja Luther
12:27 PM bug #5832: It is not possible to search for hybrids in taxon search
This is because hybrids do not have a namecache and the search works on the nameCache. Katja Luther
11:22 AM task #6089 (Resolved): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Applied in changeset cdmlib:commit:cdmlib|30451d3cd027497576ee106c435c62d4b5021e9a. Andreas Müller
11:22 AM Revision 30451d3c (cdmlib): fix #6089 Remove taxonomicParentCache and taxonomicChildrenCount from...
Andreas Müller
11:17 AM Revision a14ebae1 (cdmlib): remove ImportReport in model branch
Andreas Müller
11:13 AM bug #6120: Cleanup uuidAndTitleCache methods
Applied in changeset cdmlib:commit:cdmlib|c6af6a3d58f8fa0ec2a803f8651b8acd04139fde. Andreas Müller
11:13 AM bug #6072: Implement getTaxonomicGroups for Edaphobase
Applied in changeset cdmlib:commit:cdmlib|1e8a54ffa558ce07fa340c307d6ec447a8f66d40. Andreas Müller
10:53 AM Revision 4f2fff32 (cdmlib): minor
Andreas Müller
10:53 AM Revision 4881f5e5 (cdmlib): ref #5499 add some markerType methods
Andreas Müller
10:53 AM Revision 062fde15 (cdmlib): fix #6122 fix signature issue
Andreas Müller
10:53 AM Revision b4b7bfe8 (cdmlib): fix #6122 add titleCache service to remote
Andreas Müller
10:53 AM Revision 4642e957 (cdmlib): Create and rename Identifiable(List)Controllers
Andreas Müller
10:53 AM Revision 2d1fc4f4 (cdmlib): Use abstract controller for identifiable controllers
Andreas Müller
10:53 AM Revision 40812151 (cdmlib): fix #6122 add titleCache service
Andreas Müller
10:53 AM Revision 33754b79 (cdmlib): fx #6119 Implement uuidAndTitleCache remote services
Andreas Müller
10:53 AM Revision 77351513 (cdmlib): Minor cleanup
Andreas Müller
10:53 AM Revision c6af6a3d (cdmlib): fix #6120 Cleanup uuidAndTitleCache methods
Andreas Müller
10:53 AM Revision 51cfe899 (cdmlib): add missing changes
Katja Luther
10:53 AM Revision 4b37153c (cdmlib): minor
Katja Luther
10:52 AM Revision 91e5776b (cdmlib): specimen import/search changes
Katja Luther
10:44 AM Revision d9b720ac (cdmlib): delete system.out.println from test
Katja Luther
10:44 AM Revision bb8caa72 (cdmlib): Updating develop poms back to pre merge state
jenkins
10:41 AM Revision 49773574 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
10:35 AM Revision 04b17372 (cdmlib): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
10:23 AM Revision 75921880 (cdmlib): updating poms for 4.4.0-SNAPSHOT development
jenkins
10:23 AM Revision ff7f5e37 (cdmlib): Rename doPageChildNodes
Andreas Müller
10:23 AM Revision 189558f3 (cdmlib): ref #6065 improved Pager handling
Andreas Müller
10:23 AM Revision 21d66ebf (cdmlib): ref #6065 improved Pager handling and pager exception handling
Andreas Müller
10:23 AM Revision d8c4f8b9 (cdmlib): ref #6065 Handle synonyms in taxonInContext
Andreas Müller
10:23 AM Revision 7dde0731 (cdmlib): Cleanup
Andreas Müller
10:23 AM Revision 1d54cd17 (cdmlib): ref #6065 fix NPEs in classification service
Andreas Müller
10:23 AM Revision ae7b9470 (cdmlib): ref #6065 fix NPE in pageSize/limit
Andreas Müller
10:23 AM Revision 8c2c6a09 (cdmlib): ref #6065 fix NPE in pageSize
Andreas Müller
10:23 AM Revision 4f290ba6 (cdmlib): ref #6065 fix page size and add marked ancestors
Andreas Müller
10:23 AM Revision d17b9e90 (cdmlib): ref #6065 first implementation of taxonInContext service
Andreas Müller
10:23 AM Revision fe053257 (cdmlib): ref #6065 fix missing taxonUuid in URL
Andreas Müller
10:23 AM Revision 50355d23 (cdmlib): cleanup
Andreas Müller
10:23 AM Revision 3a646557 (cdmlib): further refactor FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller
10:23 AM Revision 912932b1 (cdmlib): rename FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller
10:23 AM Revision f6930dd5 (cdmlib): ref #6066 rename childNodes to childNodesByTaxon in ClassificationCon...
Andreas Müller
10:23 AM Revision 83220271 (cdmlib): Revert "fix #6037 per batch transction commit implemented for excel i...
This reverts commit 53067226137bd8528e6bc26f21edbf98aebe26a9. Andreas Kohlbecker
10:23 AM Revision b296585f (cdmlib): ref #6066 add getChildNodes to classification service
Andreas Müller
10:23 AM Revision 87e6bb6f (cdmlib): ref #6087 adding orderINdex to TermDTO
Andreas Kohlbecker
10:23 AM Revision f742ce44 (cdmlib): ref #6066 fix Index out of bound exception
Andreas Müller
10:23 AM Revision 6a70de90 (cdmlib): fix failing IPNI Service Test
Katja Luther
10:23 AM Revision 38b82688 (cdmlib): fix #6061: search in titlecache and nomenclatural titleCache in getUu...
Katja Luther
10:23 AM Revision 1b107dc2 (cdmlib): revert tests
Andreas Müller
10:23 AM Revision 4dc39e99 (cdmlib): Ignore service test
Andreas Müller
10:23 AM Revision 5c95a5bf (cdmlib): ref #6072 test missing entity in webservice
Andreas Müller
10:23 AM Revision 0cf72dcb (cdmlib): ref #6072 test missing entity in webservice
Andreas Müller
10:23 AM Revision c70c5dcb (cdmlib): ref #6072 set defaults to false and hardcode includeEntity to true fo...
Andreas Müller
10:23 AM Revision 51104f62 (cdmlib): ref #6072 fix signature issue in remote (2nd try)
Andreas Müller
10:23 AM Revision 5dd4feb8 (cdmlib): ref #6072 fix signature issue in remote
Andreas Müller
10:23 AM Revision c46bcf17 (cdmlib): ref #6072 fix compilation issue in IIdentifiableEntityService
Andreas Müller
10:23 AM Revision d28fe45c (cdmlib): Cleanup
Andreas Müller
10:23 AM Revision 1e8a54ff (cdmlib): fix #6072 Implement findIdentifiableEntityByMarkers
Andreas Müller
10:23 AM Revision 4fb554ff (cdmlib): ref #6089 Remove failing irrelevant test
Andreas Müller
10:23 AM Revision e5605065 (cdmlib): ref #6089 Remove all calls and methods for taxonomicChildrenCount and...
Andreas Müller
10:23 AM Revision 19ef2a42 (cdmlib): fix #6066 Implement doPageChildNodes with doSynonyms
Andreas Müller
10:23 AM Revision 9f1aa368 (cdmlib): Cleanup; Delete unnecessary test classes.
Andreas Müller
10:23 AM Revision 1d5f625c (cdmlib): Clean up
Andreas Müller
10:23 AM Revision e4b34dc5 (cdmlib): Adapt failing test in NonViralNameParserImplTest
Andreas Müller
10:23 AM Revision 84bb1d2c (cdmlib): ref #6086 solving the problems in the java-script of the web applicat...
- chunk information: number rounded and label renamed
- Percentage number rounding fixed
Andreas Kohlbecker
10:23 AM Revision d178ecb9 (cdmlib): ref #6086 fix failing test
Andreas Müller
10:23 AM Revision be0e5d61 (cdmlib): some cleanup
Andreas Müller
10:23 AM Revision 4cb92234 (cdmlib): rel #6086 Improve rounding for progress monitor
* fix error in rounding by using round not ceil
* add method for user defined scaled rounding
Andreas Müller
10:23 AM Revision 7258c318 (cdmlib): fix #5837: search on abbrevTitleCache instead of abbrev title
Katja Luther
10:23 AM Revision 95f65f5e (cdmlib): correcting erroneous commit
Andreas Kohlbecker
10:23 AM Revision 10b839e4 (cdmlib): gitignore
Andreas Kohlbecker
10:23 AM Revision 4aa98446 (cdmlib): fix #4497 solving problem with status parameter in taxon search
Andreas Kohlbecker
10:23 AM Revision 1990fe50 (cdmlib): ref #5969: add PreferenceService to applicationController
Katja Luther
10:23 AM Revision 77c1c705 (cdmlib): Remove duplicate method
Patrick Plitzner
10:23 AM Revision 07a6e50e (cdmlib): rel #5957 improve tests for groupTaxaByHigherTaxon
Andreas Müller
10:23 AM Revision a8609cad (cdmlib): fix #5957 fix IndexOutOfBound exception and some other improvements f...
Andreas Müller
10:23 AM Revision 05e59317 (cdmlib): better percentage values from Progressmonitor
Andreas Kohlbecker
10:23 AM Revision c00d3bcc (cdmlib): minor
Andreas Müller
10:23 AM Revision d436abeb (cdmlib): fix #6061: search for titlecache if abbrev title is empty
Katja Luther
10:23 AM Revision 03c8f07b (cdmlib): fix #6061: smaller changes
Katja Luther
10:23 AM Revision 5ef16029 (cdmlib): ref #6032 Remove test for rank as mentioned in ticket
Patrick Plitzner
10:23 AM Revision f995ae78 (cdmlib): Add Vorabdr. to parsable volume
Andreas Müller
10:23 AM Revision f380413e (cdmlib): minor
Katja Luther
10:23 AM Revision e1c69e2f (cdmlib): minor
Katja Luther
10:23 AM Revision 3d36bbcd (cdmlib): smaller changes for importing nom. reference in normal explicit excel...
Katja Luther
10:22 AM Revision f44fb5c3 (cdmlib): normal explicit excel import: add reference to name import
Katja Luther
10:22 AM Revision 0c949c56 (cdmlib): Add javadoc for languages
Andreas Müller
10:22 AM Revision d40ad0be (cdmlib): fix #6060 parse author with -e-
Andreas Müller
10:22 AM Revision 9892fe45 (cdmlib): rel #6057 further improvements for authors with accent grave
Andreas Müller
10:22 AM Revision a333126e (cdmlib): fix #6057 Accent Graph in author parser
Andreas Müller
10:22 AM Revision 9fc0e990 (cdmlib): ref #4260 Added test for 0 parameter query
Patrick Plitzner
10:22 AM Revision 6d3f64b8 (cdmlib): minor changes in excel import
Katja Luther
10:22 AM Revision f3755e6f (cdmlib): ref #6045 some comments and clean up
Patrick Plitzner
10:22 AM Revision e2b14fdb (cdmlib): adding missing test file for tropicos import
Katja Luther
10:22 AM Revision 47da1bc9 (cdmlib): extend excel import to cover simple tropicos data
Katja Luther
10:22 AM Revision f3e8146c (cdmlib): ref #6032 test name parser support for hybrid ranks and non-hybrids
Andreas Müller
10:22 AM Revision ec9e0b76 (cdmlib): ref #6030 Add additional test for genus hybrid formula parsing
Andreas Müller
10:22 AM Revision 50aca191 (cdmlib): fix #5893: set parse reference public to use it in fauna europaea import
Katja Luther
10:22 AM Revision 4cae9071 (cdmlib): fix #6030 Parse Genus hybrid formulas correctly
Andreas Müller
10:22 AM Revision 2f495573 (cdmlib): ref #6045 Add test for getAncestor()
Patrick Plitzner
10:22 AM Revision 889c7e91 (cdmlib): fix #6045: fixing the NaturalOrderComparator and complete the test
Katja Luther
10:22 AM Revision a9e92136 (cdmlib): fix #5869 adapt implementation for reusing names or taxa with remoting
Katja Luther
10:22 AM Revision aa478e85 (cdmlib): ref #6045 Fix NPE for TaxonNaturalComparator
- fix getAncestors() method of taxon node
- added JUnit test
Patrick Plitzner
10:22 AM Revision cd53ed98 (cdmlib): ref #5837 implement search for nomenclatural title
Katja Luther
10:22 AM Revision a82e8663 (cdmlib): ref #6042 Avoid -title cache generation not implemented- for citations
in specimen table view Patrick Plitzner
10:22 AM Revision db7c13f4 (cdmlib): fix #5828: add abbrevTitleCache and titleCache to uuidAndTitleCache
Katja Luther
10:22 AM Revision 81bcaf06 (cdmlib): Remove @Ignore from test
Patrick Plitzner
10:22 AM Revision c13b20b4 (cdmlib): revert the changes in representation of rank infraspecific unranked
Katja Luther
10:22 AM Revision 075bc33f (cdmlib): Fix merge problems
Patrick Plitzner
10:22 AM Revision d81a4119 (cdmlib): fix #6001 Clean up multiple sourceNotLinked() methods
Patrick Plitzner
10:22 AM Revision f073606c (cdmlib): Fix titlecache issues for specimen table in data portal
- Use Link class for every link
- Open all links in new window
Patrick Plitzner
10:22 AM Revision 80d86f0e (cdmlib): smaller changes
Katja Luther
10:22 AM Revision d3c53a58 (cdmlib): specimen import changes
Katja Luther
10:22 AM Revision 7f3f7703 (cdmlib): Import specimen scans with StillImage type
Patrick Plitzner
10:22 AM Revision e5413aa3 (cdmlib): Remove unneccesary casts
Patrick Plitzner
10:22 AM Revision b6c2dd01 (cdmlib): ref #5448 Change abbreviation for unranked infraspecific rank
Patrick Plitzner
10:22 AM Revision 65053ce9 (cdmlib): fix #6037 per batch transction commit implemented for excel imports
Andreas Kohlbecker
10:22 AM Revision b2cdc597 (cdmlib): #5751 remove version numbers from cdmlib-db and some cleanup
Andreas Müller
10:22 AM Revision 90a4759c (cdmlib): #5751 finish redo r28780
* use cdmlib-test in persistence for 2 antrun plugin and hibernate3 plugin Andreas Müller
10:22 AM Revision 9d99878c (cdmlib): #5751 Partly redo r28780,
* remove com.mchange from cdmlib-remote-webapp test scope
* use cdmlib-db in persistence for 2 further plugins
Andreas Müller
10:22 AM Revision 89edc8d2 (cdmlib): #5751 further redo r28776, handle c3p0 via cdmlib-db in persistence
Andreas Müller
10:22 AM Revision ddfeb94f (cdmlib): #5751 further redo r28776, add cdmlib-db to persistence and remote-we...
Andreas Müller
10:22 AM Revision 9b14d59d (cdmlib): #5751 Partly redo r28776, add c3p0 and mchange to cdmlib-db
* r28776 had been reverted due to problems, try to redo those parts that
do not create problems
Andreas Müller
10:22 AM Revision c81d69db (cdmlib): #3868 Add nothovar. test
Andreas Müller
10:22 AM Revision 3a8df162 (cdmlib): #6000 fix missing default color
Andreas Müller
10:22 AM Revision 53047c94 (cdmlib): #6000 Add static methods and uuids for new PAT terms
Andreas Müller
10:22 AM Revision b9cc4434 (cdmlib): #6000 Add some new PresenceAbsenceTerms from Cyprus and Cuba
* Invasive changed to naturalized invasive (Cyprus, according to Pysek)
* naturalized invasive: presence questionab...
Andreas Müller
10:22 AM Revision e561a9d4 (cdmlib): #6000 Use new CASUAL Method instead of derpeacted INTRODUCED_ADVENTIT...
Andreas Müller
10:22 AM Revision eafa3175 (cdmlib): #6000 Unify some PresenceAbsenceTerms (merge naturalized, rename adve...
Andreas Müller
10:22 AM Revision 67cecfbb (cdmlib): Improve import report
Patrick Plitzner
10:22 AM Revision 15b4b2c0 (cdmlib): #5251 Fix Incorrect taxon source attachments
Patrick Plitzner
10:22 AM Revision adfafad3 (cdmlib): Improved import report
Patrick Plitzner

10/06/2016

05:02 PM Revision b5a13d3d (cdmlib): set the tests to ignore until the dna import is fixed again
Katja Luther
05:02 PM Revision 29ee6f42 (cdmlib): fix merge problems
Katja Luther
05:02 PM Revision 40ad1567 (cdmlib): fix merge problems
Katja Luther
05:02 PM Revision 51fdd82a (cdmlib): fix merge problem
Katja Luther
05:02 PM Revision a031824e (cdmlib): minor
Katja Luther
05:02 PM Revision 180fa299 (cdmlib): minor
Katja Luther
05:02 PM Revision e797de01 (cdmlib): missing changes in test
Katja Luther
05:02 PM Revision 02d46959 (cdmlib): Avoid double dot at end of field unit titlecache
Patrick Plitzner
05:02 PM Revision 2bcd23da (cdmlib): Improve ABCD import report
Patrick Plitzner
05:02 PM Revision 187bc599 (cdmlib): missing changes in taxonDao
Katja Luther
05:02 PM Revision cb77e468 (cdmlib): minor
Katja Luther
05:02 PM Revision d9a28e0c (cdmlib): minor
Katja Luther
05:02 PM Revision b41d771a (cdmlib): delete the excluded taxa parameter for UuidAndTitleCache of classific...
Katja Luther
05:01 PM Revision 4d017d52 (cdmlib): hamonization of specimen import
Katja Luther
05:01 PM Revision 702e2f6e (cdmlib): Revert "getUuidAndTitleCache of classificationservice does not need t...
This reverts commit 1b553592f0055e0fec1ab3878236fa0ecad1bd17. Katja Luther
05:01 PM Revision 1a8f15ad (cdmlib): first implementation for harmonization of import of specimen data
Katja Luther
05:01 PM Revision ce2ea9e9 (cdmlib): sortindex updater utilities
Katja Luther
05:01 PM Revision 4d622b5d (cdmlib): getUuidAndTitleCache of classificationservice does not need the exclu...
Katja Luther
05:01 PM Revision 92835c7d (cdmlib): Allow whitespace after species epithet hybrid sign
Andreas Müller
05:01 PM Revision c013af56 (cdmlib): #3868 Handle notho ranks correctly while formatting
Andreas Müller
05:01 PM Revision 33543fe4 (cdmlib): Use title cache as fallback for specimen DTO for portal table
Patrick Plitzner
05:01 PM Revision 21ad7624 (cdmlib): #5981 Add abbreviation to Rank "Cultivar"
Andreas Müller
05:01 PM Revision 551fdcf6 (cdmlib): #5777 Replace dash type in PAT symbols
Andreas Müller
05:01 PM Revision d6fa3b9e (cdmlib): Use EN_DASH in E+M Condensed Distribution
Andreas Müller
05:01 PM Revision 5abd7a84 (cdmlib): #5777 Fix symbol reading for PresenceAbsenceTerm csv
Andreas Müller
05:01 PM Revision 9d567be5 (cdmlib): Add isInfraGenericButNotSpeciesGroup() method to Rank
Andreas Müller
05:01 PM Revision 17e6a14c (cdmlib): Pass pageSize and pageNumber to list method
Patrick Plitzner
05:01 PM Revision 5df1abe9 (cdmlib): small changes in CsvNameExport
Katja Luther
05:01 PM Revision aaf5494f (cdmlib): It seems as if oclc number are no longer supported by the MobotOpenUr...
Andreas Kohlbecker
05:01 PM Revision adfc15ec (cdmlib): small change in CdvNameExport
Katja Luther
04:58 PM Revision c047b4ab (cdmlib): minor
Andreas Müller
04:58 PM Revision faeea161 (cdmlib): ref #5499 add some markerType methods
Andreas Müller
04:44 PM Revision d7023fd8 (taxeditor): fix transient services
Andreas Müller
04:16 PM Revision 43539f49 (cdmlib): fix #6122 fix signature issue
Andreas Müller
03:23 PM bug #6121: NPE during portal web service requests that go through BaseController.doGetMethod()
Be aware that the edaphobase uuids are not yet stable Andreas Müller
01:21 PM bug #6121 (New): NPE during portal web service requests that go through BaseController.doGetMethod()

For example:
http://api.cybertaxonomy.org/edaphobase/portal/taxon/a032b2bc-84dd-44d5-a149-57a3e23da605/sec.json
...
Andreas Kohlbecker
02:51 PM Revision 9c337ba9 (cdmlib): fix #6122 add titleCache service to remote
Andreas Müller
02:38 PM Revision d7043c98 (cdmlib): Use abstract controller for identifiable controllers
Andreas Müller
02:32 PM Revision a18426a8 (cdmlib): Create and rename Identifiable(List)Controllers
Andreas Müller
02:24 PM bug #6122 (Resolved): add titleCache service
Applied in changeset commit:cdmlib|3dfc49ed20bbef8f573798864ced75424f892470. Andreas Müller
02:21 PM bug #6122 (Closed): add titleCache service
We need a service that returns only the titleCache for a given uuid.
By default it returns the titleCache as store...
Andreas Müller
02:24 PM Revision 3dfc49ed (cdmlib): fix #6122 add titleCache service
Andreas Müller
01:24 PM Revision d74d7297 (cdmlib): fx #6119 Implement uuidAndTitleCache remote services
Andreas Müller
01:00 PM bug #6120: Cleanup uuidAndTitleCache methods
Andreas Müller wrote:
> Please also check the code if you think it is reasonable
In TaxonBaseSelectionDialog it n...
Katja Luther
12:50 PM bug #6120: Cleanup uuidAndTitleCache methods
Please also check the code if you think it is reasonable Andreas Müller
12:37 PM bug #6120 (Resolved): Cleanup uuidAndTitleCache methods
Applied in changeset cdmlib:commit:cdmlib|8d6c8a12abe82836eae03eab6a43b3cdea6d26df. Andreas Müller
12:35 PM bug #6120 (Closed): Cleanup uuidAndTitleCache methods
In TaxonService we have 2 methods getUuidAndTitleCacheTaxon and getUuidAndTitleCacheSynonym. They could be merged int... Andreas Müller
12:48 PM Revision 53a122e4 (taxeditor): fix #6120 Cleanup uuidAndTitleCache methods
Andreas Müller
12:36 PM Revision 8d6c8a12 (cdmlib): fix #6120 Cleanup uuidAndTitleCache methods
Andreas Müller
11:51 AM bug #6119 (Resolved): Implement uuidAndTitleCache remote services
Andreas Müller

10/05/2016

02:57 PM Revision 22738258 (taxeditor): minor
Katja Luther
02:55 PM Revision cdd0428a (taxeditor): ref #6047: add the adapted files
Katja Luther
02:52 PM Revision 79d06d0f (taxeditor): fix #6047: add the possibility to the termComboElement that the id...
Katja Luther
02:27 PM bug #5854 (Worksforme): Deleting terms has no effect
the deletion already works and the lists of terms are refereshed correctly. Katja Luther
02:17 PM bug #6056 (Closed): Checklist Editor does not close session
Katja Luther
01:18 PM task #6118 (In Progress): evaluate spring-security-auth2 and spring-cloud-security as a framework...
Andreas Kohlbecker
01:18 PM task #6118 (Closed): evaluate spring-security-auth2 and spring-cloud-security as a framework for ...
[spring-security-oauth](http://projects.spring.io/spring-security-oauth) & [Spring-Cloud-Security](http://cloud.sprin... Andreas Kohlbecker
12:54 PM task #2055: Improve Article creation for nomenclatural references
needs time for discussion and consistency check with Berlin Model situation (see duplicating ticket) Andreas Müller
12:40 PM bug #5211 (Worksforme): Error when creating new taxon /problem with sortindex in taxon tree
Probably fixed with better handling for null values in merge. Andreas Müller
12:19 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Or even better solution, use DTOs on server side. Andreas Müller
12:11 PM bug #5691: Referencing objects view makes editor inresponsive if an object references many objects
Maybe the problem is the label provider which initializes lazy objects. Which thread does it use? Andreas Müller
11:38 AM bug #5965 (In Progress): Check if authentication works correctly after datasource change
Andreas Müller
11:28 AM feature request #5972: Prevent user from unwanted author and reference updates
Decision: for id > 0 implement check for further references and inform the user in red about these references if they... Andreas Müller

10/04/2016

02:26 PM Revision c5764380 (cdmlib): Minor cleanup
Andreas Müller
12:55 PM bug #6115: protect cdm content by drupal permission
Hi Andreas,
the review of this ticket need intensive testing. I suggest we use one of the published portals on the...
Andreas Kohlbecker
12:45 PM bug #6115 (Resolved): protect cdm content by drupal permission
Applied in changeset cdm-dataportal:commit:cdm-dataportal|c6fe437bfe330b2aa1cc96d32d956edfc14f8b19. Andreas Kohlbecker
12:50 PM bug #6062 (Closed): NPE in RefencingObjects for TaxonNameDescription
Though #5616 is not yet fully fixed I think we can close this ticket now. Andreas Müller
12:45 PM feature request #5616: Add the"Open in..." menu to taxon search
The first issue seems to be fixed.
Handling of orphaned taxa still does not work (neither the icon nor the right c...
Andreas Müller
12:44 PM Revision b5ff8a25 (cdm-dataportal): removing unsed permissions defined in extlinks module
Andreas Kohlbecker
12:44 PM Revision fd5d8378 (cdm-dataportal): removing unsed permissions defined in cdm_api module
Andreas Kohlbecker
12:44 PM Revision c6fe437b (cdm-dataportal): fix #6115 protecting all cdm content with new permission
Andreas Kohlbecker
12:44 PM Revision 8385a9f2 (cdm-dataportal): removing unused permission
Andreas Kohlbecker
12:35 PM Revision 6a0ca989 (cdm-dataportal): fix #6114 ref #4379 avoiding empty citation feature block wit...
Andreas Kohlbecker
12:21 PM feature request #5969: Implement CdmPreference reading for database preferences
I added a remark that that the preference is stored in db and a check whether the editor is already connected to a da... Katja Luther
11:28 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences
Katja Luther wrote:
> In Revision 4625a011 a check for the existence of the preference in DB is added.
This does ...
Andreas Müller
12:19 PM Revision 68f310fd (taxeditor): ref #5969: add remark that the nomenclatural code preference is st...
Katja Luther
12:11 PM Revision 2a7c9630 (taxeditor): ref #5969: check for db connection before ty to read the preferred...
Katja Luther
11:17 AM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget
Seems to work well. Related issue about layout of filter in new ticket: #6116 Andreas Müller
11:12 AM bug #6116 (New): Advanced Search area filter layout needs to be improved
The new resizable version of the area filter looks much better already.
But 2 issues need to be solved.
1) If >...
Andreas Müller

09/30/2016

09:09 PM Revision 8f3575e1 (cdmlib): add missing changes
Katja Luther
04:34 PM Revision 1600af50 (cdmlib): minor
Katja Luther
04:09 PM Revision 090cb34e (cdmlib): specimen import/search changes
Katja Luther

09/29/2016

06:40 PM bug #6115 (Closed): protect cdm content by drupal permission
A couple of portals are currently in maintenance mode because the taxa and names must not be disclosed to the public.... Andreas Kohlbecker
06:09 PM bug #6114 (Resolved): Regression of #4379: Citations only consist of footnotes if bibliography bl...
Applied in changeset cdm-dataportal:commit:cdm-dataportal|7a751db42d606dc2662560f6a7e19bab6896fe8b. Andreas Kohlbecker
05:24 PM bug #6114 (Closed): Regression of #4379: Citations only consist of footnotes if bibliography bloc...
For details see #4379
This currently affects the FaunaEuropaea project!
Andreas Kohlbecker
06:09 PM Revision 7a751db4 (cdm-dataportal): fix #6114 ref #4379 avoiding empty citation feature block wit...
Andreas Kohlbecker
04:30 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Conclusion of the discussion:
* The current functionality can not simply be relabeled
* The current functionality...
Andreas Müller
02:07 PM bug #2957: running maven site:site for Taxonomic Editor fails
This is broken since **4 Years**. Who can take care for this ticket? Andreas Kohlbecker
11:01 AM feature request #6113 (New): webserivce to expose FieldUnits related to a Taxon TaxonName as KML ...

potentially helpful libraries:
* https://github.com/micromata/javaapiforkml ***
* https://github.com/highsource...
Andreas Kohlbecker
10:57 AM bug #3226: openlayers map google baselayers: api keys rejected
this is easy to fix Andreas Kohlbecker

09/28/2016

02:55 PM Revision a299ffc0 (cdmlib-apps): cleanup IAPTImportTest
Andreas Müller

09/27/2016

01:26 PM bug #6111 (Closed): invalid SQL (MySQLSyntaxErrorException) during call to CdmEntityDaoBase.list()
The Specimens Table in the chichorieae portal is no longer working due to a bug in the `CdmEntityDaoBase.list()` meth... Andreas Kohlbecker
12:06 PM Revision 1069d3f0 (cdm-dataportal): HOTFIX for 4.3.0
Andreas Kohlbecker
12:05 PM Revision b3b63fc8 (cdm-dataportal): HOTFIX for 4.3.0
Andreas Kohlbecker
08:55 AM Revision 0057eb30 (cdmlib): delete system.out.println from test
Katja Luther

09/26/2016

05:25 PM feature request #6110 (Closed): Use https for map service calls when the portal is access via https
Andreas Kohlbecker
03:17 PM feature request #6076: Specimen search should work on observations
The specimen search works only for preserved specimen, but should return all kind of specimen.
Therefore the filte...
Katja Luther
01:33 PM feature request #6076 (In Progress): Specimen search should work on observations
Please add some more information what it is all about. Andreas Müller
02:38 PM feature request #5969 (Resolved): Implement CdmPreference reading for database preferences
In Revision 4625a011 a check for the existence of the preference in DB is added. Katja Luther
01:48 PM bug #6051: Add toggle button for simple details view for names
try to synchronize with same issue in media view Andreas Müller
01:13 PM bug #4348: Remove InputDialog in creating new bulk editor entities where not needed
Explain solution with wizards and create new tickets for all required wizards. Andreas Müller
12:18 PM feature request #5185 (Worksforme): drag & drop for descriptions and descriptionElements
Drag & drop works fine. But after creating a new Description you have to save before move a descriptionelement to the... Katja Luther
10:15 AM feature request #5185: drag & drop for descriptions and descriptionElements
Is this still open. Adapt target version if closed. Andreas Müller
12:17 PM bug #6109 (Worksforme): Drag & Drop after creating a new description fails
When creating a new description and try to move a description element to this new description without saving throws t... Katja Luther
10:36 AM bug #6042: Campanula portal TODOS
Please create sub tasks and add mails as comments Andreas Müller
10:24 AM bug #6077 (Resolved): Import of gathering images
Andreas Müller
09:39 AM bug #6088: New reproducable multiple representations exception for name relationships
I think I could find when this exception occurs: Always when using a name already opened in bulk editor to create the... Katja Luther
08:52 AM Revision c92df786 (taxeditor): ref #3573 Add streamlined ABCD import configurator page
Patrick Plitzner
08:36 AM Revision 84bd3966 (taxeditor): Fix label for term vocabularies in term editor
Patrick Plitzner
08:14 AM Revision dd433955 (cdm-vaadin): ref #5458 Add named areas selection box
Patrick Plitzner
06:32 AM Revision 9c1235e7 (taxeditor): Trim code
Patrick Plitzner
05:31 AM Revision ce1318e1 (cdm-vaadin): ref #5458 Enhance detail window messages
Patrick Plitzner

09/23/2016

04:47 PM Revision 190378ef (cdm-server): Merge branch 'release/4.3.0' into develop
jenkins
04:46 PM Revision 3c5d8ea0 (cdm-server): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
04:46 PM Revision 7cafc316 (cdm-webapp): Merge branch 'release/4.3.0' into develop
jenkins
04:46 PM Revision 20c2c91a (cdm-webapp): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
04:46 PM Revision 8b3f925a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.3.0
jenkins
04:24 PM Revision 2753ac07 (taxeditor): Merge branch 'release/4.3.0' into develop
jenkins
04:24 PM Revision 0875c8c1 (taxeditor): Merge branch 'release/4.3.0'
jenkins
03:53 PM Revision 85ba0f85 (cdm-vaadin): Merge branch 'release/4.3.0' into develop
jenkins
03:53 PM Revision 27615a57 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:51 PM Revision 9253394c (cdm-vaadin): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
03:51 PM Revision 51a19104 (cdm-vaadin): jenkins bumping cdmlib.version to 4.3.0
jenkins
03:48 PM Revision b77c38e5 (cdm-dataportal): Merge branch 'release/4.3.0' into develop
jenkins
03:47 PM Revision 9ed30d90 (cdm-dataportal): updating poms for branch'release/4.3.0' with non-snapshot ver...
jenkins
03:47 PM Revision edab5d9f (cdm-dataportal): release-preparation: production level css
jenkins
03:37 PM Revision 24d785a7 (cdmlib): Updating develop poms back to pre merge state
jenkins
03:37 PM Revision 8eb64819 (cdmlib): Merge branch 'master' into develop
jenkins
03:37 PM Revision d735544d (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:37 PM Revision f1bba308 (cdmlib): Merge branch 'release/4.3.0'
jenkins
03:20 PM feature request #6066 (Closed): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
02:00 PM feature request #6066 (Resolved): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
02:00 PM feature request #6066: Edaphobase DTO for getChildrenTaxaOfId
New version in classification controller:
http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5d...
Andreas Müller
03:19 PM Revision c036b9c0 (cdmlib): updating poms for branch'release/4.3.0' with non-snapshot versions
jenkins
03:16 PM bug #6073 (Closed): Fix groupByHigherTaxon webservice
Andreas Müller
03:15 PM Revision 304b03cc (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.3.0-SN...
jenkins
03:15 PM Revision a9e96f8b (cdm-webapp): updating poms for 4.4.0-SNAPSHOT development
jenkins
03:15 PM Revision dcd4cc8e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.4.0-SN...
jenkins
03:15 PM Revision 60b7d5b5 (taxeditor): Updated version in pom / project files to taxeditor version : 4.4....
jenkins
03:15 PM Revision 82b02bfc (taxeditor): Updated version in pom / project files to taxeditor version : 4.3....
jenkins
03:12 PM Revision c87034b8 (cdm-vaadin): jenkins bumping cdmlib.version to 4.3.0-SNAPSHOT
jenkins
03:12 PM Revision 24e2f0a4 (cdm-vaadin): updating poms for 4.4.0-SNAPSHOT development
jenkins
03:12 PM Revision 5043921c (cdm-vaadin): jenkins bumping cdmlib.version to 4.4.0-SNAPSHOT
jenkins
03:12 PM Revision 266b0280 (cdm-server): updating poms for 4.4.0-SNAPSHOT development
jenkins
03:12 PM Revision 1360e865 (cdm-dataportal): updating poms for 4.4.0-SNAPSHOT development
jenkins
03:09 PM Revision 16007e6b (cdmlib): updating poms for 4.4.0-SNAPSHOT development
jenkins
02:52 PM bug #6071 (In Progress): Handle Taxonomische Großgruppen correctly in Edaphobase
Offen:
~~Import~~
Evtl. Offen:
... ~~und danach soll eine Liste von Taxa gruppiert werden können~~
Andreas Müller
02:48 PM Revision 38e1c00c (cdmlib): Rename doPageChildNodes
Andreas Müller
02:41 PM bug #6072: Implement getTaxonomicGroups for Edaphobase
Open issue: handle includeEntity correctly Andreas Müller
02:40 PM bug #6072: Implement getTaxonomicGroups for Edaphobase
This has been solved by implementing findByMarker similar to findByIdentifier.
Example:
http://test.e-taxonomy...
Andreas Müller
02:28 PM bug #6064: Edaphobase problems with webservices
Beispiel für grouping: http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5d9865e6-84fe-4fff-b36b-... Andreas Müller
12:16 PM feature request #6065 (Resolved): Edaphobase DTO for getTaxonById
Still to test: fehlerhafte UUIDs sollten zu 404 (Reseource not found) Fehler führen. Andreas Müller
12:14 PM feature request #6065: Edaphobase DTO for getTaxonById
Examples:
Taxon with child and synonym:
http://test.e-taxonomy.eu:80/cdmserver/edaphobase_test/classification/5...
Andreas Müller
11:40 AM Revision 45e49818 (cdmlib): ref #6065 improved Pager handling
Andreas Müller
11:06 AM Revision cb994835 (cdmlib): ref #6065 improved Pager handling and pager exception handling
Andreas Müller
11:03 AM Revision cf76baeb (cdmlib): ref #6065 Handle synonyms in taxonInContext
Andreas Müller
11:00 AM Revision 322ee472 (cdmlib): Cleanup
Andreas Müller

09/22/2016

03:33 PM Revision 38798657 (cdm-vaadin): ref #5458 Enhance user messages
Patrick Plitzner
02:10 PM Revision 316e2aa5 (cdmlib): ref #6065 fix NPEs in classification service
Andreas Müller
01:25 PM Revision d9ea157d (cdmlib): ref #6065 fix NPE in pageSize/limit
Andreas Müller
12:27 PM Revision 3b841bb7 (cdmlib): ref #6065 fix NPE in pageSize
Andreas Müller
12:00 PM Revision 6ae724c9 (cdm-vaadin): ref #5458 Fix duplicate column exception
Patrick Plitzner
11:54 AM Revision 3ed14411 (cdm-vaadin): ref #5458 Extract duplicate code
Patrick Plitzner
11:31 AM Revision 6f0224b6 (cdm-vaadin): ref #5458 Do view data binding in enter() method of table view
Patrick Plitzner
11:27 AM bug #6108 (New): Too many columns exception when selecting TDWG areas in distribution area
~~~
Sep 22, 2016 11:26:11 AM com.vaadin.data.util.sqlcontainer.SQLContainer getPropertyIds
Warnung: Failed to fetch...
Patrick Plitzner
11:20 AM Revision b1a08bb1 (cdmlib): ref #6065 fix page size and add marked ancestors
Andreas Müller
10:37 AM Revision 765139ec (cdmlib): ref #6065 fix missing taxonUuid in URL
Andreas Müller
09:34 AM Revision 9f8c87ee (cdm-vaadin): ref #5458 Implement update of distribution editor via settings wi...
Patrick Plitzner

09/21/2016

09:26 PM Revision 16acec00 (taxeditor): fix transient services
Andreas Müller
05:49 PM Revision e1f5fda9 (cdmlib): ref #6065 first implementation of taxonInContext service
Andreas Müller
05:47 PM Revision 59dbcede (cdmlib): cleanup
Andreas Müller
04:30 PM Revision 3e9b93db (cdm-vaadin): ref #5458 Correctly log out of session when clicking logout button
Patrick Plitzner
03:19 PM task #6107 (New): Establish performance monitoring
The suggestions given in https://www.infoq.com/articles/Diagnose-Microservice-Performance-Anti-Patterns could help us... Andreas Kohlbecker
03:11 PM Revision c1499ddd (cdmlib): further refactor FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller
02:48 PM Revision ff5981db (cdmlib): rename FindByIdentifierDTO and FindByMarkerDTO
Andreas Müller
01:07 PM feature request #5890: Implement auto-suggest for data portal
Added "Experimental" to settings description
Should we move this feature to 4.4?
Patrick Plitzner
01:06 PM Revision 6a5d84e2 (cdm-dataportal): ref #5890 Added "Experimental" to settings description
Patrick Plitzner
01:03 PM feature request #5969: Implement CdmPreference reading for database preferences
If no datasource is selected an NPE occurs:
~~~
login :
editor version : 4.3.0.201609201350
server : /
sche...
Andreas Müller
12:05 PM feature request #5969: Implement CdmPreference reading for database preferences
The implementation in the local preferences UI works well now and I think we can close the ticket.
But maybe we ca...
Andreas Müller
12:04 PM bug #6106 (New): [Discuss] Handle rights and roles for CdmPreferences
Currently every user can change CdmPreferences.
Do we need a new role "CdmPreferenceAdmin" or should the right be ...
Andreas Müller
12:00 PM Revision 5eb888b1 (cdmlib-apps): ref #5448 Remove unnecessary saving
Patrick Plitzner
12:00 PM Revision a3140a55 (cdmlib-apps): ref #5448 Enhance name checking
Patrick Plitzner
11:45 AM bug #6086 (Closed): Percentage value in ProgressMonitor accuratly rounded
This seems to be fully solved. Andreas Kohlbecker
11:30 AM bug #6105 (Resolved): Make CdmPreferences editable in separate view
We started editing CdmPreferences in #5969. This is experimental as the UI mixes local preferences with CdmPreference... Andreas Müller
11:30 AM feature request #6037 (Rejected): Allow intermediate commits in Excel import
This would be nice to have but did not work after the initial implementation, solving the errors seems not worth it. ... Andreas Kohlbecker
11:26 AM Revision 19c7c9f3 (cdmlib): Revert "fix #6037 per batch transction commit implemented for excel i...
This reverts commit 53067226137bd8528e6bc26f21edbf98aebe26a9. Andreas Kohlbecker
11:14 AM Revision 7dcb230b (taxeditor): fix transient service
Andreas Müller
10:51 AM Revision b661d598 (cdmlib): ref #6066 rename childNodes to childNodesByTaxon in ClassificationCon...
Andreas Müller
10:07 AM Revision e5fa5ee8 (cdmlib): ref #6066 add getChildNodes to classification service
Andreas Müller
09:45 AM Revision 03e96dec (taxeditor): also add null check in comparator of nomenclaturalReferenceSelecti...
Katja Luther
09:39 AM bug #6061 (Closed): Add titlecache to nom author search
Katja Luther
09:37 AM bug #6061 (Resolved): Add titlecache to nom author search
Applied in changeset taxeditor:commit:taxeditor|28027bed8148feb8c9a3cfdbd7e203e62ad51733. Katja Luther
09:32 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> With the above example Aaaa/Bbbb I get the following exception when exactly searching for "*...
Katja Luther
09:37 AM Revision 28027bed (taxeditor): fix #6061: add a null check for abbrevTitleCache and titleCache in...
Katja Luther

09/20/2016

11:46 PM bug #6019 (Closed): Link to changeset does not work yet
this works now in the production version Andreas Kohlbecker
11:44 PM task #6006 (Closed): setup automatic refresh of repositories in Redmine
No problems so far, the refresh works for all configured repos. Andreas Kohlbecker
11:41 PM bug #6104 (New): install gitolite
The git repos need an access control and a general management layer.
Gitolite seems to be the best choice: http://...
Andreas Kohlbecker
06:41 PM bug #6100: Name parser problems
Hallo Andreas,
korrekter Sonderfall des Brummitt & Powell Standard:
Da R.Br. 3x vorhanden ist, ist der erste R....
Andreas Kohlbecker
12:55 PM bug #6100 (In Progress): Name parser problems
When running the IAPT import (#6026) a lot of names can not be parsed.
For a better overview I split the affected...
Andreas Kohlbecker
06:36 PM task #6020 (Feedback): Consider replacing custom field 'keywords' by redmine_tags
could you do the xcheck once again? Andreas Kohlbecker
06:35 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
This is fixed now. Andreas Kohlbecker
05:53 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
Da scheint es leider noch Probleme zu geben.
2 Beispiele: http://130.133.70.38/redmine/issues/1420 sollte Tags Fa...
Andreas Kohlbecker
05:50 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
problem solved in awk script
please test again.
Andreas Kohlbecker
05:28 PM Revision f58a08fa (cdm-dataportal): fixing minor bug related to taxonomic children block
Andreas Kohlbecker
05:18 PM bug #6087: Top level items not sorted in tree of advanced search areaFilter widget
Please test again. All remaining issues are solved. Andreas Kohlbecker
05:17 PM bug #6087 (Resolved): Top level items not sorted in tree of advanced search areaFilter widget
Applied in changeset commit:cdm-dataportal|c079337e19b7aa2b7e23a64a78da5085b92029ee. Andreas Kohlbecker
05:17 PM Revision 8f2cbbc0 (cdm-dataportal): ref #6087 resizable area filter widget finetuning
Andreas Kohlbecker
05:17 PM Revision c079337e (cdm-dataportal): fix #6087 sorting areas by orderIndex
Andreas Kohlbecker
05:16 PM Revision 6dbfb2ec (cdmlib): ref #6087 adding orderINdex to TermDTO
Andreas Kohlbecker
04:59 PM feature request #5616: Add the"Open in..." menu to taxon search
Andreas Müller wrote:
> Better now but still some issues:
>
> * For pure names (not related to taxa) the right cl...
Patrick Plitzner
04:29 PM feature request #5616: Add the"Open in..." menu to taxon search
Better now but still some issues:
* For pure names (not related to taxa) the right click menu does not show up at ...
Andreas Müller
01:45 PM feature request #5616: Add the"Open in..." menu to taxon search
Fixed in taxeditor:commit:taxeditor|92634d22a080f6de8af639dae12fe771cda64ceb Patrick Plitzner
04:59 PM Revision 0e9a6a75 (taxeditor): ref #5616 Generalize evaluation of available CdmViewers
Patrick Plitzner
04:22 PM Revision 6b605d3b (cdm-dataportal): ref #6087 area filter widget more initial size and resizeable
Andreas Kohlbecker
04:00 PM feature request #6103 (New): Refactor name editor to be based on taxon nodes
Currently the TaxonEditorInput and the name editor are based on taxa. The editor input already stores the taxon node ... Patrick Plitzner
03:15 PM Revision 016cfa57 (taxeditor): Compare taxon editor input based on taxon instead of taxon node (R...
93c6e0a894d2e4b0c9df6c7c3feff2f20e0b9e38) Patrick Plitzner
02:49 PM bug #6101 (Resolved): NPE when having multiple lanugage support disabled
Applied in changeset taxeditor:commit:taxeditor|db09bbf4cace84076e5fadb241440655b734827f. Katja Luther
02:11 PM bug #6101 (Closed): NPE when having multiple lanugage support disabled
This happens when doing a right-click in the feature term editor
Some GUI elements are not initialised when multi ...
Patrick Plitzner
02:49 PM Revision db09bbf4 (taxeditor): fix #6101: add a check for multilanguage preference
Katja Luther
02:30 PM feature request #6102 (New): advanced taxon search offers filter on distribution status
successor of #4497
The area filter in the advanced search needs to be complemented with a filter for the distribut...
Andreas Kohlbecker
02:26 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Katja Luther wrote:
> Andreas Müller wrote:
> > But first revert the already existing changes!!!
>
> It is alrea...
Andreas Müller
02:23 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
Andreas Müller wrote:
> But first revert the already existing changes!!!
It is already reverted see Revision 6e57...
Katja Luther
02:00 PM feature request #6041: Change the label of "Set as basionym of homotypical group"
But first revert the already existing changes!!! Andreas Müller
10:24 AM feature request #6041: Change the label of "Set as basionym of homotypical group"
This needs to be discussed in User Meeting, move it to Release 4.4 and decide then if we change it or not. Katja Luther
02:24 PM bug #6061 (Feedback): Add titlecache to nom author search
With the above example Aaaa/Bbbb I get the following exception when exactly searching for "*B".
Entering "*Bb" works...
Andreas Müller
01:51 PM Revision cdbf325e (cdmlib): ref #6066 fix Index out of bound exception
Andreas Müller
01:48 PM bug #6084 (Closed): NPE when opening the checklist editor with no areas selected in preferences
works fine Patrick Plitzner
01:44 PM Revision 92634d22 (taxeditor): ref #5616 Fix class check for bulk editor porperty tester
- handle UuidAndTitleClache Patrick Plitzner
12:23 PM Revision dd2c540b (cdmlib-apps): fix #6035 one more broken character
Andreas Kohlbecker
11:45 AM Revision dc4d1922 (cdmlib-apps): fix #6093 including more taxa into algea registry import
Andreas Kohlbecker
10:50 AM feature request #6066 (Feedback): Edaphobase DTO for getChildrenTaxaOfId
Andreas Müller
10:49 AM feature request #6066: Edaphobase DTO for getChildrenTaxaOfId
Getestet unter http://test.e-taxonomy.eu/cdmserver/edaphobase_test/doc/?group=Generic%20REST%20API#!/taxon-node-contr... Andreas Müller
10:13 AM bug #6082: Local managed server in Taxeditor fails during start
To be honest I am not sure which of the 3 changes was the crucial one and if they are all required.
I only remembe...
Andreas Müller
10:05 AM bug #6082 (Closed): Local managed server in Taxeditor fails during start
Yes this change actually fixes the problem. Howver, it is strange that it is necessary to explicitly name all jars in... Andreas Kohlbecker
10:11 AM bug #6099: Duration of save is increasing
the time consuming call is CdmStore.getService(ITaxonNodeService.class).merge(taxonNode, true);
Katja Luther
10:09 AM bug #6099 (Closed): Duration of save is increasing
Hallo Andreas,
also das Speicherns dauert nach Neuanlegen einer Common names bei Hieracium immer noch unerträglich...
Katja Luther

09/19/2016

10:14 PM bug #6082 (Resolved): Local managed server in Taxeditor fails during start
commit:taxeditor|ccf3875f seems to fix the problem.
Please check.
Andreas Müller
05:16 PM bug #6082 (Feedback): Local managed server in Taxeditor fails during start
The changes committed before did apparently not solve the problem.
The latest build made by jenkins still was having...
Andreas Kohlbecker
03:45 PM bug #6082 (Resolved): Local managed server in Taxeditor fails during start
Applied in changeset taxeditor:commit:taxeditor|09ab8026ce80a7f76ad3bc250f303aee986c3dab. Andreas Kohlbecker
03:44 PM bug #6082: Local managed server in Taxeditor fails during start
this seems to be caused by incomplete entries in the `eu.etaxonomy.taxeditor.webapp/build.properties` Andreas Kohlbecker
03:31 PM bug #6082: Local managed server in Taxeditor fails during start
This does not happen from within the IDE and the eu.etaxonomy.taxeditor.webapp_4.3.0.201609190837.jar of the lastets ... Andreas Kohlbecker
09:50 PM Revision ccf3875f (taxeditor): ref #6082 try to fix dependency issues in managed TaxEditor
Andreas Müller
03:45 PM Revision 09ab8026 (taxeditor): fix #6082 fixing incomplete entries in the eu.etaxonomy.taxeditor....
Andreas Kohlbecker
02:39 PM Revision 93c6e0a8 (taxeditor): Compare taxon editor input based on taxon node instead of taxon
Patrick Plitzner
02:39 PM Revision 18fd7dae (taxeditor): Generalize title creation for cdm view parts
Patrick Plitzner
02:39 PM Revision cc330739 (taxeditor): i18n for view titles
Patrick Plitzner
02:14 PM Revision 3c85c23f (cdmlib-apps): ref #6097 filter to include algae only - better match pattern
Andreas Kohlbecker
02:03 PM bug #6098 (New): Improve session handling for TaxonNavigator and newTaxonNodeWizard
related to #5607.
It looks like the reason is that the assistant is using the navigator session and the navigator...
Katja Luther
01:45 PM Revision 4ca412d5 (taxeditor): fix #5607: add sec reference to property path solves the problem o...
Katja Luther
01:33 PM bug #6087 (Feedback): Top level items not sorted in tree of advanced search areaFilter widget
Andreas Müller
01:33 PM bug #6087: Top level items not sorted in tree of advanced search areaFilter widget
The ordering is now alphabetic but not according to the ordering in the vocabular as written in the description (espe... Andreas Müller
01:33 PM Revision 6a1ec853 (cdmlib-apps): #6097 filter to include algae only
Andreas Kohlbecker
01:33 PM Revision 91b69818 (cdmlib-apps): moving TestDatabase back to main - a couple of classes had compl...
Andreas Kohlbecker
01:22 PM Revision 2dab7ea0 (taxeditor): remove System.out.println...
Katja Luther
01:12 PM bug #6061 (Resolved): Add titlecache to nom author search
Applied in changeset cdmlib:commit:cdmlib|40dfdbc5479f32292017fadeca45b8424dda4896. Katja Luther
01:10 PM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Deduplication of equals caches looks good now.
>
> Search on titleCache does not yet work...
Katja Luther
01:06 PM bug #6061: Add titlecache to nom author search
Deduplication of equals caches looks good now.
Search on titleCache does not yet work. E.g. create a Person with n...
Andreas Müller
01:12 PM Revision 40dfdbc5 (cdmlib): fix #6061: search in titlecache and nomenclatural titleCache in getUu...
Katja Luther
01:08 PM bug #6056 (Resolved): Checklist Editor does not close session
Applied in changeset taxeditor:commit:taxeditor|bfc8d3b4b4853357b40551eca7a283ce68bbe865. Katja Luther
01:07 PM Revision bfc8d3b4 (taxeditor): fix #6056: when creating checklisteditorInput don't init session a...
Katja Luther
10:08 AM Revision c38ba443 (cdmlib): fix failing IPNI Service Test
Katja Luther
09:29 AM Revision 4764fee3 (cdmlib-apps): removing duplicate repository
Andreas Kohlbecker
08:19 AM Revision ceece5d1 (cdmlib-apps): Merge branch 'IAPT'
Conflicts:
app-import/.gitignore
app-import/pom.xml
Andreas Kohlbecker
08:16 AM Revision 67432178 (cdmlib-apps): move test classes in app-import
Andreas Müller

09/17/2016

07:52 AM Revision f26bf544 (cdmlib): revert tests
Andreas Müller
07:21 AM Revision 96377298 (cdmlib): Ignore service test
Andreas Müller
07:04 AM Revision 70052603 (cdmlib): ref #6072 test missing entity in webservice
Andreas Müller

09/16/2016

12:27 AM Revision 30165a24 (cdmlib-apps): fix #6095 log duplicate registrations during import
Andreas Kohlbecker
11:18 PM Revision 9f53e2a3 (cdmlib): ref #6072 test missing entity in webservice
Andreas Müller
10:35 PM Revision 34bb1837 (cdmlib): ref #6072 set defaults to false and hardcode includeEntity to true fo...
Andreas Müller
09:11 PM Revision 39e5a6f0 (taxeditor): fix transientServices (2)
Andreas Müller
08:41 PM Revision b6d768b1 (taxeditor): fix transientService
Andreas Müller
07:56 PM Revision 67c1061b (cdmlib): ref #6072 fix signature issue in remote (2nd try)
Andreas Müller
07:31 PM Revision 395b33fe (cdmlib): ref #6072 fix signature issue in remote
Andreas Müller
07:03 PM Revision 35cc0406 (cdmlib): ref #6072 fix compilation issue in IIdentifiableEntityService
Andreas Müller
05:30 PM bug #6072 (Resolved): Implement getTaxonomicGroups for Edaphobase
Applied in changeset cdmlib:commit:cdmlib|65b68496361721de9312edbb53f02ecb2c77b12b. Andreas Müller
05:30 PM Revision 8e9785f0 (cdmlib): Cleanup
Andreas Müller
05:30 PM Revision 65b68496 (cdmlib): fix #6072 Implement findIdentifiableEntityByMarkers
Andreas Müller
05:20 PM Revision ac956ff7 (cdmlib-apps): fix #6094 importing 'registration' data into an Extension object
Andreas Kohlbecker
04:34 PM bug #5680: Out-of-Memory when editing TaxonInteraction
Katja Luther wrote:
> another problem with Families in other Floras:
>
>
> creation of a new Families in other ...
Katja Luther
11:35 AM bug #6056: Checklist Editor does not close session
I found the problem: When disposing the session, the session should be removed from the sessionManager, but the get(o... Katja Luther
11:13 AM Revision 73871c73 (cdmlib-apps): ref #6026 SpecimenType = FOSSIL for fossil taxa/names
Andreas Kohlbecker
08:19 AM Revision 046ccd06 (cdmlib-apps): ref #6026 more parser improvements and tests
Andreas Kohlbecker

09/15/2016

12:43 AM Revision 60dffe1d (taxeditor): ref #6089 Fix not compiling operation
Andreas Müller
12:35 AM Revision 98941a6c (taxeditor): ref #6089 Fix failing test and transient service after taxonomicCh...
Andreas Müller
12:29 AM Revision 8571c3d3 (taxeditor): Rename Checklist-Editor -> Distribution-Editor
Andreas Müller
11:20 PM Revision 77ed5af2 (cdmlib): ref #6089 Remove failing irrelevant test
Andreas Müller
11:13 PM Revision b4db8cea (cdmlib-apps): move test classes in app-import
Andreas Müller
11:09 PM Revision 22abd4ac (cdmlib): ref #6089 Remove all calls and methods for taxonomicChildrenCount and...
Andreas Müller
11:08 PM task #6089 (In Progress): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Andreas Müller
11:08 PM task #6089 (Closed): Remove taxonomicParentCache and taxonomicChildrenCount from Taxon
Andreas Müller
11:00 PM Revision aa66fec3 (cdmlib): Cleanup; Delete unnecessary test classes.
Andreas Müller
10:22 PM Revision 13ed824e (cdmlib-apps): ref #6026 more parser improvements and tests
Andreas Kohlbecker
06:13 PM feature request #6066 (Resolved): Edaphobase DTO for getChildrenTaxaOfId
Applied in changeset cdmlib:commit:cdmlib|a295b517875ed51a93997bf044543e04b8c2351a. Andreas Müller
06:13 PM Revision a295b517 (cdmlib): fix #6066 Implement doPageChildNodes with doSynonyms
Andreas Müller
06:08 PM Revision cecffedf (cdmlib): Clean up
Andreas Müller
06:04 PM Revision 971424cc (cdmlib): Adapt failing test in NonViralNameParserImplTest
Andreas Müller
05:51 PM Revision f4ce5055 (cdmlib-apps): ref #6026 improving specimenType parsers: better recognition of ...
Andreas Kohlbecker
05:33 PM Revision 5e52d4ec (cdmlib-apps): ref #6026 solving problems in date and specimenType parsers, als...
Andreas Kohlbecker
04:52 PM bug #6088 (Closed): New reproducable multiple representations exception for name relationships
What I did:
* Goto name bulk editor and create 2 new names: *Related name One* and *Related name Two*.
* Make R...
Andreas Müller
03:33 PM Revision d74b5cdc (cdmlib): ref #6086 solving the problems in the java-script of the web applicat...
- chunk information: number rounded and label renamed
- Percentage number rounding fixed
Andreas Kohlbecker
03:10 PM Revision 3273ef7c (cdmlib): ref #6086 fix failing test
Andreas Müller
02:40 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Can you please check if this fixes the problem? Andreas Müller
02:38 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Experience shows (see class DefaultProgressMonitorTest) that rounding errors mostly appear when SubProgressMonitors a... Andreas Müller
02:28 PM bug #6086: Percentage value in ProgressMonitor accuratly rounded
Ceil is not the correct method, use round instead, otherwise the result is only rounded into one direction. Andreas Müller
11:55 AM bug #6086 (Closed): Percentage value in ProgressMonitor accuratly rounded
The percentage value on the progress of the indexing process is often reported as 99,99% when the job is completet.
...
Andreas Kohlbecker
02:27 PM Revision 6f59693f (cdmlib): rel #6086 Improve rounding for progress monitor
* fix error in rounding by using round not ceil
* add method for user defined scaled rounding
Andreas Müller
02:23 PM Revision 87348c2d (taxeditor): fix #5702: filter for current name in name details view if select ...
Katja Luther
02:21 PM Revision 504fc7ef (cdmlib): some cleanup
Andreas Müller
02:04 PM Revision ab85455e (cdmlib-apps): ref #6035 adding more character fixed and adding source referene...
Andreas Kohlbecker
01:54 PM Revision 398b9c0f (taxeditor): ref #5837: if nomenclatural titleCache and titleCache are equal on...
Katja Luther
01:26 PM bug #6061: Add titlecache to nom author search
now searching with * at the beginning of the search pattern searches on abbrevTitleCache and titleCache
Katja Luther
09:59 AM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Katja Luther wrote:
> > > > ... but the...
Katja Luther
09:25 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Search on titleCache with * at the beginning (additionally to the nom.title) still does not ...
Katja Luther
09:12 AM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > ... but the object already selected does...
Katja Luther
08:55 AM bug #6061: Add titlecache to nom author search
Andreas Müller wrote:
> Katja Luther wrote:
> > ... but the object already selected does not show up in the selecti...
Katja Luther
01:22 PM Revision d00e4ab1 (taxeditor): ref 6061: using * at the beginning of search pattern triggers a se...
Katja Luther
01:20 PM feature request #5969: Implement CdmPreference reading for database preferences
there was no check whether the preference is already in DB, now if the preference could not find in DB the local one ... Katja Luther
11:50 AM feature request #5969 (Feedback): Implement CdmPreference reading for database preferences
When trying to open Preferences-Taxonomic-NomenclaturalCode I got an NPE:
~~~
login : admin
editor version : 4.3...
Andreas Müller
01:18 PM Revision 4625a011 (taxeditor): ref #5969: check if there is a NC preference in db if not use the ...
Katja Luther
12:26 PM bug #6087 (Resolved): Top level items not sorted in tree of advanced search areaFilter widget
Applied in changeset commit:cdm-dataportal|fdf52d6a1031775b9ec229df88bb0a84ad54649a. Andreas Kohlbecker
12:24 PM bug #6087 (Closed): Top level items not sorted in tree of advanced search areaFilter widget

ich sehe gerade, dass zumindest bei Cuba http://portal.cybertaxonomy.org/flora-cuba/cdm_dataportal/search die Areal...
Andreas Kohlbecker
12:26 PM Revision fdf52d6a (cdm-dataportal): fix #6087 areaFilter item sorting fixed
Andreas Kohlbecker
12:01 PM task #6029: trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
http://130.133.70.38/redmine/issues/226 still has status closed instead of rejected, though it was a won't fix (http... Andreas Müller
10:44 AM task #6029 (Feedback): trac resolution to redmine status mapping invalid for `wontfix` and `inval...
I implemented a repair script (attached).
Please can you (a.mueller) xcheck to confirm that the fix is working
...
Andreas Kohlbecker
11:53 AM Revision 288cde13 (taxeditor): fix #5874: display of infrageneric epithet are different for zoolo...
Katja Luther
10:41 AM Revision 542640fa (cdmlib): fix #5837: search on abbrevTitleCache instead of abbrev title
Katja Luther
10:40 AM Revision d33f8978 (taxeditor): ref #6061: remove the current selection as filter in nomenclatural...
Katja Luther
08:49 AM Revision 6e572e21 (taxeditor): ref #6041: revert the changes and wait for the decision of the use...
Katja Luther

09/14/2016

10:05 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
1. NOTE: This plugin seems not to support 'Bulk edit' :(
2. Updating the migration scripts
Andreas Kohlbecker
04:06 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
migration scripts are ready, see attachments Andreas Kohlbecker
05:52 PM bug #6054 (Closed): classification breadcrumb navigation broken in IE and MS Edge
I tested with IE11 on test with cuba and it works correctly. So I guess it is fixed. Andreas Müller
05:46 PM bug #6061: Add titlecache to nom author search
Search on titleCache with * at the beginning (additionally to the nom.title) still does not work. Is this difficult t... Andreas Müller
05:41 PM bug #6061: Add titlecache to nom author search
Ordering and dot search seem to work well now. Andreas Müller
05:40 PM bug #6061: Add titlecache to nom author search
Katja Luther wrote:
> ... but the object already selected does not show up in the selection dialog. This is the same...
Andreas Müller
05:35 PM bug #6061 (Feedback): Add titlecache to nom author search
If titleCache is same as nomTitle both versions are still shown. See note-#2 Andreas Müller
12:31 PM bug #6061: Add titlecache to nom author search
The ordering works now on the abbrev title and the search works for strings with a point at the end, but the object a... Katja Luther
05:11 PM bug #6085 (New): Use lucene auto suggest functionality for improved auto suggest
Check if lucene auto-suggest functionality can be used. Currently we only use standard freetext search which leads e.... Andreas Müller
05:11 PM Revision 1de87368 (cdmlib): correcting erroneous commit
Andreas Kohlbecker
04:59 PM feature request #5890: Implement auto-suggest for data portal
Andreas Müller wrote:
> Also I do not understand why the flag to switch on auto-completion is put to Settings - Gene...
Andreas Müller
04:21 PM feature request #5890: Implement auto-suggest for data portal
Also I do not understand why the flag to switch on auto-completion is put to Settings - General - CdmServer - FreeTex... Andreas Müller
04:18 PM feature request #5890 (Feedback): Implement auto-suggest for data portal
When trying to run on http://test.e-taxonomy.eu/dataportal/preview/flora-cuba/ and searching for "Barler" I got an po... Andreas Müller
03:42 PM Revision ff9da83e (taxeditor): Minor language correction
Andreas Müller
03:24 PM bug #6062: NPE in RefencingObjects for TaxonNameDescription
The NameDescription NPE is not thrown anymore but I would like to first wait until the regression in #5616 is fixed u... Andreas Müller
09:25 AM bug #6062 (Resolved): NPE in RefencingObjects for TaxonNameDescription
Applied in changeset taxeditor:commit:taxeditor|f3fb72fdaf40e993eeec1f606bfd88caeba06898. Patrick Plitzner
09:18 AM bug #6062: NPE in RefencingObjects for TaxonNameDescription
I could only reproduce the last mentioned NPE once because I had not selected any areas. After selecting areas I coul... Patrick Plitzner
08:04 AM bug #6062: NPE in RefencingObjects for TaxonNameDescription
I added a property tester to check if the item can be shown depending on whether or not there is a bulk editor for th... Patrick Plitzner
03:13 PM feature request #6059 (Closed): Save expand state more individually
Both seem to work fine, subsections as well as supplemental data view.
We may open new tickets for other views if ...
Andreas Müller
02:48 PM feature request #5616 (Feedback): Add the"Open in..." menu to taxon search
Now it does not offer bulkeditor at all anymore, not for pure names, not for orphaned taxa and not for ordinary taxa/... Andreas Müller
12:04 PM bug #6084 (Resolved): NPE when opening the checklist editor with no areas selected in preferences
Applied in changeset taxeditor:commit:taxeditor|6ac3c9c18cc95fd462d8e2ce82dcb0904cce7c6e.
the problem was the not ...
Katja Luther
09:14 AM bug #6084 (Closed): NPE when opening the checklist editor with no areas selected in preferences
You can reproduce this by deleting the preferences for the checklist editor in `.cdmLibrary/.metadata/.plugins/org.ec... Patrick Plitzner
12:04 PM Revision 6ac3c9c1 (taxeditor): fix #6084: check if areas are selected in preferences before open ...
Katja Luther
10:33 AM bug #6063: redmine Inheritable issue categories
The latest patch inherit_cats_2.5.1.stable.13138.patch.gz can not be applied to the version 3.3.0 Andreas Kohlbecker
10:05 AM feature request #6076: Specimen search should work on observations
... should work on all types of "RecordBasis" (wenn es um Importe oder Specimeneingaben geht, AlgaTerra hat z.B. Liv... Wolf-Henning Kusber
07:11 AM Revision f3fb72fd (taxeditor): fix #6062 Add property tester for "Open in..." bulk editor menu items
- moved isGroupEditor property test to bulk editor plugin Patrick Plitzner
07:07 AM Revision 75271240 (taxeditor): Trim code
Patrick Plitzner
06:28 AM Revision be092848 (taxeditor): Organize imports
Patrick Plitzner

09/13/2016

06:43 PM task #6020: Consider replacing custom field 'keywords' by redmine_tags
During installation, more specifically at `bundle install` the following information is printed out.
This might be i...
Andreas Kohlbecker
06:25 PM Revision 28d2e75f (cdmlib): gitignore
Andreas Kohlbecker
06:12 PM Revision 90fe4c79 (cdm-dataportal): fix #5918
Andreas Kohlbecker
05:54 PM Revision 751327d2 (cdm-dataportal): fixing bug in taxon search area filter widget + improvement
Andreas Kohlbecker
05:04 PM Revision efc9727a (taxeditor): Trim code
Patrick Plitzner
04:48 PM Revision 53183543 (cdmlib): fix #4497 solving problem with status parameter in taxon search
Andreas Kohlbecker
04:43 PM Revision efa372e9 (cdm-dataportal): fix #4497 simple exclusion of all areas with absent status fr...
Andreas Kohlbecker
04:25 PM bug #6082 (Closed): Local managed server in Taxeditor fails during start

~~~~
login :
editor version : 4.3.0.201609131149
server : /
schema version :
os : Linux 3.19.0-59-generi...
Andreas Kohlbecker
04:17 PM bug #6075: harmonize ' Enable auto-suggest' option with existing code
Sorry I confused this setting, it is on the taxon search fields.
I am correcting the issue description ...
Andreas Kohlbecker
01:54 PM bug #6075 (Closed): harmonize ' Enable auto-suggest' option with existing code
# 1)
The `[] Enable auto-suggest for taxon search` is currently in the freetext index settings.
This option sh...
Andreas Kohlbecker
03:37 PM bug #6062 (In Progress): NPE in RefencingObjects for TaxonNameDescription
Patrick Plitzner
03:23 PM feature request #6081 (New): [Specimen Search] Import report should be saved
The import report should be saved on an accessible place. So the user can reproduce what was imported correctly and w... Katja Luther
03:20 PM feature request #6080 (New): [Specimen Search] TitleCache should be configurable
It should be possible to configure the order and the content of the titlecache Katja Luther
03:17 PM bug #6079 (New): [Specimen Search] Restructure the table of search result
The table should be restructured:
- the protocol is not needed
- important are scientific name, catalogue number, l...
Katja Luther
03:09 PM bug #6078 (Resolved): import of references in specimen search
The import of references are missing in GBIF and biocase import Katja Luther
03:07 PM bug #6077 (Closed): Import of gathering images
The gathering images are imported if the import comes from a bioase provider, for a Darwin Core Archive provider it d... Katja Luther
03:05 PM feature request #6076 (Resolved): Specimen search should work on observations
Actually the specimen seach only works on Specimen, it should also search for observations. Katja Luther
01:48 PM feature request #5969 (Resolved): Implement CdmPreference reading for database preferences
first implementation added.
Katja Luther
01:42 PM Revision 98bd6727 (taxeditor): fix #5874: infrageneric epithet is visible only for species not fo...
Katja Luther
01:35 PM Revision 4e365f81 (taxeditor): ref #5616 Fix NPE for opening synonyms from SearchResult view
Patrick Plitzner
01:35 PM feature request #5616 (Resolved): Add the"Open in..." menu to taxon search
Applied in changeset taxeditor:commit:taxeditor|30afcea01068a7e0dcd2bde6b9a5f28e4bbcdd6f. Patrick Plitzner
01:11 PM Revision 30afcea0 (taxeditor): fix #5616 Add check for orphaned taxa to CdmViewer context menu
- removed default handler for this Patrick Plitzner
01:09 PM Revision c1fd631d (taxeditor): fix #5927: deletion of default language is possible if more than o...
Katja Luther
12:55 PM bug #6054: classification breadcrumb navigation broken in IE and MS Edge
Please can you confirm that this is fixed? Andreas Kohlbecker
12:47 PM bug #6054 (Resolved): classification breadcrumb navigation broken in IE and MS Edge
Applied in changeset commit:cdm-dataportal|09edee9ae258bebe52d37c98f000257c365a8768. Andreas Kohlbecker
12:45 PM Revision c084fb48 (cdm-dataportal): fixing jQuery incompatibility IE >= 9 and Edge
Andreas Kohlbecker
12:42 PM Revision b362c60f (cdm-dataportal): fixing jQuery incompatibility IE >= 9 and Edge
Andreas Kohlbecker
12:31 PM Revision 09edee9a (cdm-dataportal): fix #6054 removing rotation which is unused anyway - fixes di...
Andreas Kohlbecker
11:57 AM Revision b9801dc0 (taxeditor): ref #5969: get the preference NC from db when initialize preferenc...
Katja Luther
11:48 AM Revision 92e52208 (cdmlib): ref #5969: add PreferenceService to applicationController
Katja Luther
11:37 AM feature request #3573 (In Progress): Improve EDITOR import UI configuration panel
Patrick Plitzner
11:28 AM Revision 4ee2ca3b (cdmlib): Remove duplicate method
Patrick Plitzner
11:28 AM feature request #6059 (Resolved): Save expand state more individually
Applied in changeset taxeditor:commit:taxeditor|38eaa3c8c34ceeb65e29b7647a4bba1696e7ed4e. Patrick Plitzner
10:13 AM feature request #6059 (In Progress): Save expand state more individually
Patrick Plitzner
11:28 AM Revision 871e0d37 (taxeditor): Do not show taxon-specific deletion options when deleting
classifications Patrick Plitzner
11:28 AM Revision 5a073138 (taxeditor): ref #6059 Save expand state for supplemental data view
Patrick Plitzner
11:28 AM Revision cecbda95 (taxeditor): Clean up and refactoring
- Delete unused class
- Rename class to avoid duplicate name
Patrick Plitzner
11:28 AM Revision 38eaa3c8 (taxeditor): fix #6059 Save expand state for details view, supplemental view
including sub sections Patrick Plitzner
10:38 AM bug #6074 (New): test for the name catalogue service
the name catalogue has failed in the past an no one noticed it: #5860
We already have tests for the catalogue (htt...
Andreas Kohlbecker
10:28 AM bug #6057 (Closed): Name parser fails parsing author names with ` U+0060 GRAVE ACCENT
this works now. Thank you! Andreas Kohlbecker
10:26 AM bug #6060 (Closed): Name parser fails parsing author names with - U+002D HYPHEN-MINUS
this works now. Thank you. Andreas Kohlbecker

09/12/2016

12:12 AM Revision 776a6d47 (cdmlib-apps): ref #6026 'Coll. Lange-Bertalot..' as titleCache of Collection
Andreas Kohlbecker
12:07 AM Revision 74d84f79 (cdmlib-apps): ref #6026 using genera as higher taxon for species
Andreas Kohlbecker
05:17 PM bug #6073 (Resolved): Fix groupByHigherTaxon webservice
Andreas Müller
05:11 PM bug #6073 (Closed): Fix groupByHigherTaxon webservice
see #5957 Andreas Müller
05:07 PM bug #6072 (Closed): Implement getTaxonomicGroups for Edaphobase
Gibt eine Liste (id + Name) mit allen taxonomischen Großgruppen zurück. Beispielsweise Collembola Andreas Müller
05:00 PM bug #6071 (Closed): Handle Taxonomische Großgruppen correctly in Edaphobase

* Thema Taxonomische Großgruppen/Funktion getTaxonomicGroups
* Das ist bei uns keine extra Ebene sondern eine Eig...
Andreas Müller
04:42 PM Revision 6f52f3a9 (cdmlib): rel #5957 improve tests for groupTaxaByHigherTaxon
Andreas Müller
04:25 PM Revision 96c10a88 (cdmlib): fix #5957 fix IndexOutOfBound exception and some other improvements f...
Andreas Müller
04:23 PM Revision d39647ca (cdmlib): minor
Andreas Müller
03:34 PM Revision 658c4382 (cdmlib-apps): fix #6068
Andreas Kohlbecker
03:28 PM Revision 1ec5d31b (cdmlib): better percentage values from Progressmonitor
Andreas Kohlbecker
03:03 PM Revision bdf849a5 (cdmlib-apps): ref #6026 3 more character replacement rule
Andreas Kohlbecker
03:01 PM Revision 8b4697e6 (taxeditor): fix #5837: fix the filter of the selection dialog of nomenclatural...
Katja Luther
03:00 PM bug #6061 (Resolved): Add titlecache to nom author search
Applied in changeset cdmlib:commit:cdmlib|bdac48c7613040ed609183f74552333ef1fb626c. Katja Luther
03:00 PM Revision 98838827 (cdmlib): fix #6061: search for titlecache if abbrev title is empty
Katja Luther
03:00 PM Revision bdac48c7 (cdmlib): fix #6061: smaller changes
Katja Luther
02:52 PM feature request #6043: Name export for JACQ
Select for the export of accepted taxa:
~~~ sql
SELECT
tnb.genusOrUninomial as genus, tnb.specificEpithet a...
Katja Luther
02:36 PM Revision b67e063e (cdmlib-apps): ref #6026 fixing rank
Andreas Kohlbecker
02:22 PM Revision 9e8673a2 (taxeditor): ref #5801 Fix several NPE when editing/creating concept relations ...
active bulk editor Patrick Plitzner
02:21 PM Revision c2784f55 (taxeditor): ref #5801 Leave concept view active when editing in details/supple...
view Patrick Plitzner
02:20 PM Revision 9c419e9e (taxeditor): ref #5801 Add IUndoContext to bulk editor
Patrick Plitzner
01:45 PM feature request #6070 (New): Implement IPNI style name export
This format is required e.g. by JACQ. For an example see #6043
.
This export should be more generic:
* write in...
Andreas Müller
01:37 PM Revision 8c06c81b (cdmlib): ref #6032 Remove test for rank as mentioned in ticket
Patrick Plitzner
01:37 PM bug #6032 (Rejected): Name parser support for hybrid ranks
Andreas Müller
01:34 PM bug #6032 (Closed): Name parser support for hybrid ranks
Patrick Plitzner
12:36 PM Revision 945f3ef3 (cdmlib-apps): ref #6026 fixing bug in publication regex pattern
Andreas Kohlbecker
12:08 PM Revision 438dd662 (cdmlib-apps): ref #6026 speedup of import and fixing a minor bug
- speedup by special handling for hardly to parse reference
- minor bug during camparison of basionym names
Andreas Kohlbecker
11:33 AM Revision d918758a (cdmlib-apps): ref #6026 keepgin deteced ref type in case of 'Vorabdruck'
Andreas Kohlbecker
10:29 AM bug #6067: CdmEagerLoadingException after having multiple editors open for ~4 hours
Andreas Müller wrote:
> So it is you who deleted data in the meanwhile?
>
Exaclty, the old data was deleted when ...
Andreas Kohlbecker
10:18 AM bug #6067: CdmEagerLoadingException after having multiple editors open for ~4 hours
So it is you who deleted data in the meanwhile?
However, the general transaction problem exist. No matter if an ob...
Andreas Müller
10:04 AM bug #6067: CdmEagerLoadingException after having multiple editors open for ~4 hours
Henning was about to close some views/editors when this happened.
I think that this exception related to the fresh...
Andreas Kohlbecker
09:50 AM bug #6067: CdmEagerLoadingException after having multiple editors open for ~4 hours
The relevant code is at CdmGenericDaoImpl.initializeCollection(UUID ownerUuid, ...) line 784
~~~ java
CdmBase ...
Andreas Müller
09:23 AM bug #6067 (New): CdmEagerLoadingException after having multiple editors open for ~4 hours
Hallo,
nachdem ich über 40 Fenster über lange Zeit (mehrere Stunden) offen hatte, bekam ich die Fehlermeldungen
VG
...
Andreas Kohlbecker

09/09/2016

05:06 PM feature request #6065 (In Progress): Edaphobase DTO for getTaxonById
Andreas Müller
05:02 PM feature request #6065 (Closed): Edaphobase DTO for getTaxonById
Gibt das Taxon-Objekt zu einer ID zurück. Das Taxon muss mindestens enthalten: Name, Namensbestandteile, Rang, Typ, K... Andreas Müller
05:06 PM feature request #6066 (Closed): Edaphobase DTO for getChildrenTaxaOfId
Gibt alles zurück, was direkt unter dem angegebenen Taxon im Baum hängt (Kindtaxa und Synonyme). Der Eintrag besteht ... Andreas Müller
04:57 PM Revision 1496a7e6 (cdmlib-apps): ref #6026 NameTypes (with minor problems)
Andreas Kohlbecker
04:38 PM Revision 72831c0c (cdmlib): Add Vorabdr. to parsable volume
Andreas Müller
04:21 PM bug #6064 (In Progress): Edaphobase problems with webservices
* /portal/taxon/{uuid}
* Synonymbeziehungen nicht erkennbar (valide Taxa der Synonyme und Synonyme der validen Taxa...
Andreas Müller
03:57 PM bug #6063 (New): redmine Inheritable issue categories
see
* http://www.redmine.org/issues/11898 (Patch)
* http://www.redmine.org/issues/5358 (Issue)
On How to appl...
Andreas Kohlbecker
02:14 PM bug #6062: NPE in RefencingObjects for TaxonNameDescription
Found in nightly build 4.3.
Please check also for other types. I checked HomotypicalGroups and it was ok. For Taxo...
Andreas Müller
02:05 PM bug #6062 (Closed): NPE in RefencingObjects for TaxonNameDescription
Currently the referencing objects view offers "Open in bulk editor" for objects of type TaxonNameDescription (created... Andreas Müller
01:50 PM bug #6061: Add titlecache to nom author search
Some more critical issues:
1. Ordering works on titleCache now but one would expect it to work on nomCache. E.g. i...
Andreas Müller
01:13 PM bug #6061 (Feedback): Add titlecache to nom author search
The fix generally works, but we should further improve it.
1. If nomTitleCache and titleCache is equal we should s...
Andreas Müller
01:01 PM bug #6061 (Closed): Add titlecache to nom author search
split from #5828
1 additional improvement would be to additionally add the titleCache in brackets after the abbrev...
Andreas Müller
01:34 PM Revision c9d59f89 (cdmlib): minor
Katja Luther
01:20 PM Revision b6ef7dd5 (cdmlib): minor
Katja Luther
12:58 PM Revision 3fea1fb7 (cdmlib): smaller changes for importing nom. reference in normal explicit excel...
Katja Luther
12:30 PM Revision 24617f27 (cdmlib): normal explicit excel import: add reference to name import
Katja Luther
12:21 PM Revision 962dc999 (cdmlib-apps): ref #6026 FieldUnit locality working
Andreas Kohlbecker
11:51 AM Revision 928817b7 (cdmlib-apps): removing unused repo from the pom.xml (was used for yourkit)
Andreas Kohlbecker
11:37 AM Revision 42792f6a (cdmlib): Add javadoc for languages
Andreas Müller
09:46 AM task #6006: setup automatic refresh of repositories in Redmine
I tested the hook, it works! Andreas Kohlbecker
08:27 AM task #6006: setup automatic refresh of repositories in Redmine
the SVN is no longer synced with the git repositories. The svn repos which have been migrated to git are only archive... Andreas Kohlbecker
09:20 AM Revision 7a2e883f (cdmlib-apps): minor
Andreas Kohlbecker
09:05 AM Revision 817f2688 (cdmlib-apps): #5448 Use SEQNUM as id column
- enhance hybrid name check Patrick Plitzner
09:05 AM Revision 933eee97 (cdmlib-apps): #5448 Import HYB 'nf'
Patrick Plitzner
09:05 AM Revision 62c9db2c (cdmlib-apps): #5448 Import genus hybrid formulas
Patrick Plitzner
09:05 AM Revision 5c81a80c (cdmlib-apps): #5448 Fix import of hybrid formula
Patrick Plitzner
09:05 AM Revision f39b51ab (cdmlib-apps): #5448 Handle rank "SPI"
Patrick Plitzner
09:05 AM Revision 1677827c (cdmlib-apps): #5448 Import non-CDM ranks
Patrick Plitzner
09:05 AM Revision 20fc4e0b (cdmlib-apps): #5448 Remove non-exisiting hybrid category
Patrick Plitzner
09:05 AM Revision 4cb8b437 (cdmlib-apps): #5448 Refactor hybrid name import/check
Patrick Plitzner
09:05 AM Revision 19ed9439 (cdmlib-apps): ref #5448 code cleanup
Patrick Plitzner
09:05 AM Revision f9ef0c0c (cdmlib-apps): fix #5893: fauna europaea reference import with more atomized data
Katja Luther
09:05 AM Revision 71b0a23c (cdmlib-apps): #5448 Fix hybrid import where specific epithets are not from sam...
Patrick Plitzner
09:05 AM Revision 6dee9f63 (cdmlib-apps): #5448 Add family rank
Patrick Plitzner
09:05 AM Revision 4af5ff7a (cdmlib-apps): #5448 Fix hybrid import where specific epithets are not from sam...
Patrick Plitzner
09:05 AM Revision a2c424c2 (cdmlib-apps): #5488 Improve import of family taxa
- Load families in related object methods Patrick Plitzner
09:05 AM Revision 42c9c152 (cdmlib-apps): #5448 Add "distinct" to SQL query as family table contains dupli...
rows Patrick Plitzner
09:05 AM Revision 48003e9f (cdmlib-apps): #6000 Use new CASUAL Method instead of deprecated INTRODUCED_ADV...
Andreas Müller
09:05 AM Revision bcc15deb (cdmlib-apps): #5448 Imporve name check for multiple ex authors
Patrick Plitzner
09:05 AM Revision 38b8e920 (cdmlib-apps): #5448 Improve import of families
- clone families for checklist
- load in related objects method
Patrick Plitzner
09:05 AM Revision 307bc7da (cdmlib-apps): #5448 Change abbrev label of unranked infraspecfic rank before i...
Patrick Plitzner
09:05 AM Revision d27fae52 (cdmlib-apps): ref #5448 Reduce multiple ex authors to only two
Patrick Plitzner
09:05 AM Revision abf1c13b (cdmlib-apps): ref #5448 Reduce multiple ex authors to only two
Patrick Plitzner
09:05 AM Revision cf536939 (cdmlib-apps): adaption to specimen import changes
Katja Luther
09:05 AM Revision 1d5daa79 (cdmlib-apps): #5448 Import rank "SAM"
Patrick Plitzner
09:05 AM Revision 09549132 (cdmlib-apps): #5448 Support corner cases
- SPI and KMB as ranks
- nomenclatural status type
- HYB name checking
Patrick Plitzner
08:59 AM Revision 72bde1d7 (cdmlib-apps): ref #6026 handling 'Vorabdrucke' as Book Volume/Issue
Andreas Kohlbecker
07:36 AM Revision 9ee079fa (cdmlib-apps): ref #6026 support for making statistics on parsed type data - typo
Andreas Kohlbecker

09/08/2016

09:58 PM task #1606: Restrict filtered selection of in references to the respective reference types
This might still be an interesting open issue. Discuss with users. Andreas Müller
09:56 PM feature request #1362: Version number should be located at one place
Is this still an open issue? Andreas Müller
04:51 PM bug #6060 (Resolved): Name parser fails parsing author names with - U+002D HYPHEN-MINUS
Applied in changeset commit:cdmlib|9d20b400f4dfa58e78a27a00e5215ea2d563273d. Andreas Müller
04:22 PM bug #6060 (Closed): Name parser fails parsing author names with - U+002D HYPHEN-MINUS
For example:
* Thamniopsis stenodictyon (Sehnem) Oliveira-e-Silva & O.Yano (FAILS)
* Thamniopsis stenodictyon (Se...
Andreas Müller
04:51 PM Revision 9d20b400 (cdmlib): fix #6060 parse author with -e-
Andreas Müller
04:39 PM Revision 8a56246d (cdmlib): rel #6057 further improvements for authors with accent grave
Andreas Müller
04:24 PM bug #6057: Name parser fails parsing author names with ` U+0060 GRAVE ACCENT
Moved "hyphen" case to new ticekt #6060 Andreas Müller
03:43 PM bug #6057 (Resolved): Name parser fails parsing author names with ` U+0060 GRAVE ACCENT
Applied in changeset cdmlib:commit:cdmlib|d24cf23ca4d303a0b8a29a101097f6bd30cd022d. Andreas Müller
03:40 PM Revision c167aac2 (cdmlib-apps): ref #6026 importing Basionyms
Andreas Kohlbecker
02:47 PM Revision 9cc443ab (cdmlib-apps): ref #6026 support for making statistics on parsed type data:
Type parsing statistics:
- Type: field 'Type' can not be parsed (parse problem of whole typeString)
- Type: fielUni...
Andreas Kohlbecker
02:38 PM Revision 1968849d (cdmlib-apps): ref #6026 better type parsing
- FieldUnit: collector, fieldnumber, date
- Specimen: Collection, Subcollection, accession number
Does not work in ...
Andreas Kohlbecker
02:21 PM Revision d24cf23c (cdmlib): fix #6057 Accent Graph in author parser
Andreas Müller
01:50 PM Revision c023c9af (taxeditor): Fix NPE in TermLabelProvider
Andreas Müller
11:09 AM feature request #6059 (Closed): Save expand state more individually
copied from #5953:
Seems to work well for all top level sections of the details view.
We may also want to have ...
Patrick Plitzner
11:08 AM bug #6049 (Closed): Improve (area) filter handling for selection dialogs
created new issue for remainig issues -> #6058 Patrick Plitzner
11:07 AM feature request #6058 (Closed): Store NamedArea dialog filters more individually
copied from #6049 :
Remembering the old filters works well even when changing the datasource or reopening the edit...
Patrick Plitzner
10:40 AM Revision 344a62cd (cdmlib): ref #4260 Added test for 0 parameter query
Patrick Plitzner
09:43 AM feature request #4488: Specimen data points in map should show FieldUnit information
@Andreas K.: Could the first solution be implemented by the map service itself? Patrick Plitzner
09:31 AM feature request #4488: Specimen data points in map should show FieldUnit information
moving valid Campanula ticket to Unassigned milestone Patrick Plitzner
09:36 AM task #3249: [DISCUSS] Free text search for specimen details
moving valid Campanula ticket to Unassigned milestone Patrick Plitzner
 

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