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From 07/05/2016 to 08/03/2016

08/02/2016

04:14 PM bug #6032 (Rejected): Name parser support for hybrid ranks
The rank should be considered when parsing hybrid names like "Berberis aggregata aggregata × Berberis wilsoniae aggre... Patrick Plitzner
03:37 PM bug #6031 (New): Name parser support for multiple hybrids
Name parser should be able to parse names like "Betula humilis × pendula × pubescens" Patrick Plitzner
03:35 PM bug #6030 (Closed): Name parser support for genus hybrids
Currently the name parser is not able to parse names like "Orchis × Platanthera" Patrick Plitzner
08:26 AM task #6029 (Closed): trac resolution to redmine status mapping invalid for `wontfix` and `invalid`
The resolution is migrated correctly to the redmine custom field `Resolution` but the `Status` always is closed, see ... Andreas Kohlbecker
08:25 AM task #6028 (Closed): Post-migration (trac->redmine) fixes
After the final migration from trac to redmine problems have been discovered which should have been solved during the... Andreas Kohlbecker
08:05 AM task #6005: Create subprojects of EDIT platform components
supproject created for cdmlib-app, for now only with one issue.
We should check the 'components' given to the cdmlib...
Andreas Kohlbecker

08/01/2016

01:54 PM bug #6025 (New): Remaining open issues for cdmlib-db
In #5751 a new cdmlib module cdmlib-db has been created.
In this ticket you find the remaining issues that still n...
Andreas Müller

07/29/2016

08:01 PM feature request #5088 (Feedback): Redirect automatically to according page when search result has...
As this is now required also by others (e.g. Cuba) we should start implementing as configurable feature Andreas Müller
03:41 PM bug #6023: configuration problems with maven-antrun-plugin
see branch **jdk18-compatibility** Andreas Kohlbecker
02:49 PM bug #6023: configuration problems with maven-antrun-plugin
This problem is related to
[using iajc with java 1.8 JDK — Comparator cannot be resolved to a type](http://stacko...
Andreas Kohlbecker
10:46 AM bug #6023 (Closed): configuration problems with maven-antrun-plugin
## Problems
### 1.
Running `mvn clean install` with java 1.8 (oracle) on cdmlib fails in cdmlib-model with
...
Andreas Kohlbecker
02:51 PM feature request #5999 (Duplicate): Go directly to taxon page if only 1 result is returned for search
Andreas Müller
01:49 PM bug #6024 (Closed): Fix blocking name relationships for replacement names
Andreas Müller
01:04 PM bug #6024: Fix blocking name relationships for replacement names
Use tmp table
~~~ sql
INSERT INTO _tmpBlockName (relId, rsID, bnID, rnID)
SELECT bnrel.id bnrelid, rs.id rsid,...
Andreas Müller
12:17 PM bug #6024: Fix blocking name relationships for replacement names
~~~ sql
SELECT tnb.id rnid, tnb.uuid, tnb.titleCache as replacementName, bn.titleCache as blockingName, rs.titleCach...
Andreas Müller
11:22 AM bug #6024 (Closed): Fix blocking name relationships for replacement names
Find replacement names that do not have a blocking name relationship
~~~ sql
SELECT tnb.id, tnb.uuid, tnb.titleCa...
Andreas Müller

07/28/2016

10:34 AM feature request #5999 (Rejected): Go directly to taxon page if only 1 result is returned for search
This suggestion has already been discusses in the past, see #5088 and was rejected Andreas Kohlbecker

07/27/2016

12:03 PM task #6021: Add 'mention' functionality
Personally I am not so sure if we really need this. Andreas Müller

07/26/2016

12:01 PM task #6022 (New): Target Version select list hardly usable
We have a lot of Versions (formerly Milstoneds on trac), The select list in the issue editor is too long to easily fi... Andreas Kohlbecker
11:57 AM task #6021 (New): Add 'mention' functionality
see
* **https://www.redmine.org/plugins/rm_user_mentions**
* http://www.redmine.org/issues/13919
* http://www.r...
Andreas Kohlbecker
11:45 AM task #6020 (Closed): Consider replacing custom field 'keywords' by redmine_tags
custom issue fields cannot be edited via the bulk edit function.
Maybe the [redmine_tags plugin](https://github.com/...
Andreas Kohlbecker
11:08 AM task #6004 (Resolved): Fix wiki page Roadmap
I found a solution by making use of the [redmine_wiki_lists plugin](https://www.redmine.org/plugins/redmine_wiki_lis... Andreas Kohlbecker
08:22 AM task #6006: setup automatic refresh of repositories in Redmine
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> >
> > done for:
> >
> > * edit svn with `/var/svn/edit/hoo...
Andreas Kohlbecker

07/25/2016

06:02 PM bug #6019 (Closed): Link to changeset does not work yet
See http://dev.e-taxonomy.eu/redmine/issues/5420 which links to changeset r26712 in the comment from Cherian Andreas Müller
05:03 PM task #6003: Cleanup redmine users
Andreas Kohlbecker wrote:
> > * Maybe we should set Email notification for all locked users to "No events". I have d...
Andreas Kohlbecker
04:56 PM task #6003: Cleanup redmine users
Andreas Müller wrote:
> Open issues:
>
> * Are the following users required?
> * trac (id = 10; author of 114 w...
Andreas Kohlbecker
04:28 PM task #6003 (Resolved): Cleanup redmine users
Open issues:
* Are the following users required?
* trac (id = 10; author of 114 wiki_contents and wiki_content_v...
Andreas Müller
04:15 PM task #6003: Cleanup redmine users
I tested and updated all existing users with the following queries. Delete duplicates and set inactive users to locke... Andreas Müller
09:51 AM task #6003 (Closed): Cleanup redmine users
1. find users which are associated with tickets as *onwer*, *assignee*, etc
`select distinct u.* from issues i jo...
Andreas Kohlbecker
04:57 PM task #6006: setup automatic refresh of repositories in Redmine
Andreas Kohlbecker wrote:
>
> done for:
>
> * edit svn with `/var/svn/edit/hooks/user-post-commit`
Seems lik...
Andreas Müller
10:34 AM task #6006 (Closed): setup automatic refresh of repositories in Redmine
This needs to be done for all repos in redmine:
http://www.redmine.org/projects/redmine/wiki/HowTo_setup_automat...
Andreas Kohlbecker
03:17 PM feature request #6016 (New): ICN rules in cdm validation framework implemented
Andreas Kohlbecker
01:36 PM bug #6007: Redmine: Wiki tables are not correctly mapped to new syntax
Andreas Kohlbecker wrote:
> tables seem not (yet) to be supported [https://redmine.org/projects/redmine/wiki/Redmin...
Andreas Kohlbecker
01:33 PM bug #6007: Redmine: Wiki tables are not correctly mapped to new syntax
tables seem not (yet) to be supported [https://redmine.org/projects/redmine/wiki/RedmineTextFormattingMarkdown#Table... Andreas Kohlbecker
01:21 PM bug #6007 (New): Redmine: Wiki tables are not correctly mapped to new syntax
As an example see http://dev.e-taxonomy.eu/redmine/projects/edit/wiki/TCS Andreas Müller
01:26 PM task #6008 (New): Fix broken UTF-8 characters
Write a rake script to fix broken characters:
â€
pages with broken broken characters:
* http://dev.e-ta...
Andreas Kohlbecker
10:14 AM task #6005 (Rejected): Create subprojects of EDIT platform components
The issues related to platform components which have their own git repository should be managed in a separate subproj... Andreas Kohlbecker
09:54 AM task #6004 (Closed): Fix wiki page Roadmap
The trac query macros which have been used in trac need to be replaced by equivalent functionality in redemine:
Qu...
Andreas Kohlbecker

07/21/2016

02:31 PM feature request #5999 (Duplicate): Go directly to taxon page if only 1 result is returned for search
WG: Kann man die (in diem Kontext) unnütze Zwischenseite überspringen, wenn nur ein Treffer da ist?
For lucene s...
Andreas Müller

07/20/2016

10:17 PM bug #5676: Sensu does not show up if no author exists for secundum reference
Another example is "Elephantopus scaber" sensu FC-S & A&S which shows only "A&S" : http://portal.cybertaxonomy.org/f... Andreas Müller

07/18/2016

04:36 PM feature request #5983: Better parsing of hybrid names
Whitespace after species epithet hybrid sign implemented by r28704
Andreas Müller
04:34 PM feature request #5983 (Closed): Better parsing of hybrid names
With the "new" rules from #3868 it is now easier to distinguish hybrids names and hybrid formulas.
E.g. Abies al...
Andreas Müller
02:02 PM bug #5982 (Resolved): editing the protected titleCache set sometimes the focus to the name editor
The problem was that the propertyChange listener causes a refresh of the name editor and for an empty string a method... Katja Luther
01:57 PM bug #5982 (Closed): editing the protected titleCache set sometimes the focus to the name editor
sometimes editing the protected titleCache field yields to a focus change to the name editor text field. Therefore th... Katja Luther

07/15/2016

01:36 PM feature request #5981 (In Progress): Add abbreviation to Rank "Cultivar"
Added abbreviation to csv file: r28685
Andreas Müller
01:32 PM feature request #5981 (Closed): Add abbreviation to Rank "Cultivar"
For formatting it is helpful to have the abbreviation. Maybe not always necessary if name is handled as CultivarName,... Andreas Müller

07/14/2016

05:04 PM feature request #5778 (Resolved): Update symbols for PresenceAbsenceTerms in existing databases
First version implemented (untested) r28683
Andreas Müller
03:45 PM feature request #5778: Update symbols for PresenceAbsenceTerms in existing databases
Differences are:
~~~
c3ee7048-15b7-4be1-b687-9ce9c1a669d6; endemic; e; ?
cef81d25-501c-48d8-bbea-542ec50de2c2; pres...
Andreas Müller

07/13/2016

01:38 PM feature request #5890 (Resolved): Implement auto-suggest for data portal
Andreas Müller
01:35 PM feature request #5890 (Feedback): Implement auto-suggest for data portal
Andreas Müller

07/12/2016

01:45 PM feature request #5890 (Closed): Implement auto-suggest for data portal
Added a new ticket for weighted search results -> #5978
Patrick Plitzner

07/11/2016

05:30 PM feature request #5833 (Closed): Implement single cache strategy for references
Seems to be fixed. However, we definetly still need to improve the cache strategy. But this is handled in separate ti... Andreas Müller
05:07 PM bug #5976 (In Progress): Update sortIndex for potential nullValue sortIndexes
Andreas Müller
05:07 PM bug #5976: Update sortIndex for potential nullValue sortIndexes
First partial and untested implementation with r28672. PKNode still missing.
Andreas Müller
04:43 PM bug #5976 (Closed): Update sortIndex for potential nullValue sortIndexes
see #5955
Old data still needs to be updated. We already ran an updater but to be on the save side that really a...
Andreas Müller
02:44 PM bug #5861 (Closed): Taxon appended phrase must not be in italics
Andreas Müller
02:44 PM bug #5861: Taxon appended phrase must not be in italics
Looks good. I think we can close the ticket.
Andreas Müller
02:33 PM bug #4965 (Resolved): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchema...
more general solution (for all supported database types) implemented by r28671
Andreas Müller

07/08/2016

09:07 PM feature request #5974 (Closed): Remove synonym relationships
Synonym relationships are not necessarily needed as a synonym always belongs to 1 explicit taxon. They are only neede... Andreas Müller
08:58 PM feature request #3925 (In Progress): Unplaced and excluded to TaxonNode
Andreas Müller
08:56 PM bug #5284 (In Progress): [UML] Replace Scope by DefinedTerm in PolytomousKey UML
Andreas Müller
08:52 PM feature request #5258 (In Progress): Accessed field for WebPages
Andreas Müller
08:46 PM feature request #5523 (In Progress): [DISCUSS] Do we need to distinguish homotypic and heterotypi...
Andreas Müller
08:45 PM feature request #5634 (In Progress): Excluded note for excluded taxa /taxon nodes
Andreas Müller
08:42 PM feature request #5778 (In Progress): Update symbols for PresenceAbsenceTerms in existing databases
Andreas Müller
08:37 PM feature request #5921 (Resolved): Change symbol for congruence relationship.
Fixed by r28665
Andreas Müller
05:37 PM feature request #5921 (In Progress): Change symbol for congruence relationship.
Andreas Müller
08:02 PM bug #5826: Clean up names with empty name descriptions
Some SQL statements for testing
~~~
SELECT db.id, dba.DTYPE, dba.feature_id, db.created
FROM DescriptionBase db IN...
Andreas Müller
08:00 PM bug #5826 (Resolved): Clean up names with empty name descriptions
Fixed by r28664
Andreas Müller
05:37 PM bug #5826 (In Progress): Clean up names with empty name descriptions
Andreas Müller
06:19 PM feature request #5875 (Resolved): Add isDefault flag to DescriptionBase
Andreas Müller
06:19 PM feature request #5875: Add isDefault flag to DescriptionBase
Fixed by r28663
Andreas Müller
05:38 PM feature request #5875 (In Progress): Add isDefault flag to DescriptionBase
Andreas Müller
05:34 PM feature request #5970 (Resolved): Implement allowOverride in CdmPreference
Andreas Müller
05:22 PM feature request #5970: Implement allowOverride in CdmPreference
fixed by [28661] and [28659]
Andreas Müller
02:48 PM feature request #5970 (In Progress): Implement allowOverride in CdmPreference
Andreas Müller
02:48 PM feature request #5970 (Closed): Implement allowOverride in CdmPreference
if false, the preference should not be overridden by local preferences
if true local preferences override databa...
Andreas Müller
04:30 PM feature request #5972 (Feedback): Prevent user from unwanted author and reference updates
From time to time it happens that users press the "edit" button for editing authors or references.
This is usual...
Andreas Müller
02:53 PM feature request #5971 (Closed): Implement database wide CdmPreference writing
Similar to TaxEditor preferences CDM Preferences need to be inserted/updated.
In the new "Admin" main menu we ne...
Andreas Müller
02:37 PM feature request #5969 (Closed): Implement CdmPreference reading for database preferences
Start with NomenclaturalCode. The values are available through IPreferenceService.
See also #3958, #5971
Andreas Müller
10:21 AM bug #5965 (Worksforme): Check if authentication works correctly after datasource change
Hallo,
bei Caryophyllales_spp gibt’s folgende Meldung (Rubiaceae_Mex) funktioniert.
Herzlichen Gruß
Walter
...
Andreas Müller

07/07/2016

01:45 PM bug #5964 (New): It is not possible to search for hybrid formulas in taxon search
I tested this with Festuca × Lolium
see also #5832 (same ticket for TaxEditor)
Patrick Plitzner

07/06/2016

03:26 PM feature request #5833 (Resolved): Implement single cache strategy for references
Andreas Müller
11:24 AM bug #5191 (Worksforme): TransmissionEngineDistribution stops before it is 100% done
seems to be fixed by one the latest changes (most probably aadb17f) :
* 9b7db8d TransmissionEngineDistribution: sol...
Andreas Kohlbecker

07/05/2016

04:06 PM feature request #5956 (Feedback): Improve functionality and UX for (children display in) breadcru...
successor of #5852
1) remove transparency (needs to be discussed if needed): moved to #6312
2) mobile devic...
Andreas Kohlbecker
04:00 PM bug #5861: Taxon appended phrase must not be in italics
Replying to [[comment3|a.mueller]]:
> Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/d...
Andreas Kohlbecker
01:45 PM feature request #5947: Type information for same field unit should be handled in one line
"Or even better with abbreviate type status (e.g. HT instead of Holotype). "
Type status should not be abbreviated. ...
Wolf-Henning Kusber
10:02 AM feature request #5947 (New): Type information for same field unit should be handled in one line
Currently each type designation has one line, but shouldn't if both types have the same field unit.
Example: htt...
Andreas Müller
11:47 AM feature request #5952 (Closed): Second cache field for specimen (identityCache)
for more information see #5951
Andreas Müller
10:28 AM bug #5948 (Closed): supress protologue icon if according media uri is missing
http://api.cybertaxonomy.org/rubiaceae_mexico/portal/name/ea5142cd-8c09-4b0b-b57a-8a1e2c869be0/taxonNameDescriptions.... Andreas Kohlbecker
 

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