Project

General

Profile

Activity

From 06/30/2016 to 07/29/2016

07/29/2016

08:01 PM feature request #5088 (Feedback): Redirect automatically to according page when search result has exactly one matching item
As this is now required also by others (e.g. Cuba) we should start implementing as configurable feature Andreas Müller
03:41 PM bug #6023: configuration problems with maven-antrun-plugin
see branch **jdk18-compatibility** Andreas Kohlbecker
02:49 PM bug #6023: configuration problems with maven-antrun-plugin
This problem is related to
[using iajc with java 1.8 JDK — Comparator cannot be resolved to a type](http://stacko...
Andreas Kohlbecker
10:46 AM bug #6023 (Closed): configuration problems with maven-antrun-plugin
## Problems
### 1.
Running `mvn clean install` with java 1.8 (oracle) on cdmlib fails in cdmlib-model with
...
Andreas Kohlbecker
03:41 PM Revision c637ed1c (cdmlib): #5751 changing scope of cdmlib-db to compile for testing - this is maybe not really needed
Andreas Kohlbecker
03:38 PM Revision 796730a2 (cdmlib): #6023 trying to replace the maven-antrun plugin my the maven-aspectj plugin - does not work:
- compilation fails due to problems with generics Andreas Kohlbecker
03:36 PM Revision 2c4ee628 (cdmlib): #6023 adding missing dependency spring-context-support for antrun aspectj
Andreas Kohlbecker
03:32 PM Revision 71890f03 (cdmlib): #6023 fixing broken file location of spring-aspects for aspectj
Andreas Kohlbecker
03:26 PM Revision b6196547 (cdmlib): # #5751 mchange-commons-java needs to match the version as defined in the c3p0/pom.xml
- unsure if this is really needed but readded to better conform to pervious setup Andreas Kohlbecker
03:09 PM Revision 83d01838 (cdmlib): Upgrading maven-jetty-plugin to a version compatible to jdk 1.8
Andreas Kohlbecker
03:09 PM Revision 4a551354 (cdmlib): #5751 Further cleanup for cdmlib-db and poms
Andreas Müller
03:06 PM Revision d2968d5d (cdmlib): #3868 Add nothovar. test
Andreas Müller
02:51 PM feature request #5999 (Duplicate): Go directly to taxon page if only 1 result is returned for search
Andreas Müller
01:49 PM bug #6024 (Closed): Fix blocking name relationships for replacement names
Andreas Müller
01:04 PM bug #6024: Fix blocking name relationships for replacement names
Use tmp table
~~~ sql
INSERT INTO _tmpBlockName (relId, rsID, bnID, rnID)
SELECT bnrel.id bnrelid, rs.id rsid,...
Andreas Müller
12:17 PM bug #6024: Fix blocking name relationships for replacement names
~~~ sql
SELECT tnb.id rnid, tnb.uuid, tnb.titleCache as replacementName, bn.titleCache as blockingName, rs.titleCach...
Andreas Müller
11:22 AM bug #6024 (Closed): Fix blocking name relationships for replacement names
Find replacement names that do not have a blocking name relationship
~~~ sql
SELECT tnb.id, tnb.uuid, tnb.titleCa...
Andreas Müller

07/28/2016

10:32 PM Revision ccc14670 (taxeditor): #5751 Remove c3p0 dependency
Andreas Müller
04:02 PM Revision 0515d9fc (cdmlib): #5751 Adaptions to cdmlib poms to replace explicit drivers by cdmlib-db
... Replace explicit DB drivers versioning from cdmlib-parent pom
Forgot to add in previous merge
Andreas Müller
03:50 PM Revision 1c56dd72 (taxeditor): #5751 Remove explicit dependencies to DB drivers by cdmlib-db in poms
Andreas Müller
03:33 PM Revision 9824b51b (cdm-server): #5751 Remove explicit dependencies to DB drivers by cdmlib-db in CDM
Server Andreas Müller
03:23 PM Revision 6b693bbc (cdmlib): #5751 Adaptions to cdmlib poms to replace explicit drivers by cdmlib-db
* Add c3po and mchange-commons-java to cdmlib-db
* Replace explicit DB drivers from cdmlib-persistence.pom by cdmlib...
Andreas Müller
12:55 PM Revision 7247a62e (cdmlib-apps): #6000 Use new CASUAL Method instead of deprecated INTRODUCED_ADVENTITIOUS
Andreas Müller
12:40 PM Revision 68c7d536 (cdmlib): #6000 fix missing default color
Andreas Müller
10:34 AM feature request #5999 (Rejected): Go directly to taxon page if only 1 result is returned for search
This suggestion has already been discusses in the past, see #5088 and was rejected Andreas Kohlbecker

07/27/2016

05:46 PM Revision 145fc7c6 (cdmlib): #6000 Add static methods and uuids for new PAT terms
Andreas Müller
05:27 PM Revision 92ef0c45 (cdmlib-apps): Fixing strange dependency problem related to spring-orm version
Andreas Kohlbecker
05:13 PM Revision 5044803f (cdmlib): #6000 Add some new PresenceAbsenceTerms from Cyprus and Cuba
* Invasive changed to naturalized invasive (Cyprus, according to Pysek)
* naturalized invasive: presence questionab...
Andreas Müller
05:13 PM Revision 8bec79dd (cdmlib-apps): Initial set of classes for the IAPT import
Andreas Kohlbecker
05:09 PM Revision fd5fd2c8 (cdmlib): #6000 Use new CASUAL Method instead of derpeacted INTRODUCED_ADVENTITIOUS
Andreas Müller
01:38 PM Revision cb67ca59 (cdmlib): #6000 Unify some PresenceAbsenceTerms (merge naturalized, rename adventitious -> casual, etc)
Andreas Müller
12:03 PM task #6021: Add 'mention' functionality
Personally I am not so sure if we really need this. Andreas Müller
10:50 AM Revision 90ec6419 (cdmlib-apps): removing build.xml
Andreas Kohlbecker
10:50 AM Revision 2b46bf5b (cdmlib-apps): gitignore
Andreas Kohlbecker
09:19 AM Revision 1e60fc7c (cdmlib-apps): #5448 Add "distinct" to SQL query as family table contains duplicate
rows Patrick Plitzner

07/26/2016

05:13 PM Revision 35b4c4a3 (cdmlib-apps): removing build.xml
Andreas Kohlbecker
05:12 PM Revision 8c25844f (cdmlib-apps): gitignore
Andreas Kohlbecker
05:09 PM Revision 19369d9b (cdmlib-apps): Fixing repository settings and project group id
Andreas Kohlbecker
05:09 PM Revision 6ab8444c (cdmlib-apps): Fixing repository settings and project group id
Andreas Kohlbecker
03:53 PM Revision e38554be (taxeditor): line endings
Patrick Plitzner
03:30 PM Revision 310262a2 (cdmlib-apps): #5488 Improve import of family taxa
- Load families in related object methods Patrick Plitzner
12:01 PM task #6022 (New): Target Version select list hardly usable
We have a lot of Versions (formerly Milstoneds on trac), The select list in the issue editor is too long to easily fi... Andreas Kohlbecker
11:57 AM task #6021 (Rejected): Add 'mention' functionality
see
* **https://www.redmine.org/plugins/rm_user_mentions**
* http://www.redmine.org/issues/13919
* http://www.r...
Andreas Kohlbecker
11:45 AM task #6020 (Closed): Consider replacing custom field 'keywords' by redmine_tags
custom issue fields cannot be edited via the bulk edit function.
Maybe the [redmine_tags plugin](https://github.com/...
Andreas Kohlbecker
11:10 AM Revision e1d0ff38 (cdmlib-apps): #5448 Fix hybrid import where specific epithets are not from same genus
Patrick Plitzner
11:09 AM Revision 04d95229 (cdmlib-apps): #5448 Add family rank
Patrick Plitzner
11:08 AM task #6004 (Resolved): Fix wiki page Roadmap
I found a solution by making use of the [redmine_wiki_lists plugin](https://www.redmine.org/plugins/redmine_wiki_lis... Andreas Kohlbecker
09:09 AM Revision a02150f9 (cdmlib-apps): #5448 Fix hybrid import where specific epithets are not from same genus
Patrick Plitzner
09:01 AM Revision cc9d28ec (cdmlib-apps): #5448 Pass rank and nomenclatural code to name parser creation
Patrick Plitzner
08:22 AM task #6006: setup automatic refresh of repositories in Redmine
Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> >
> > done for:
> >
> > * edit svn with `/var/svn/edit/hoo...
Andreas Kohlbecker
08:11 AM Revision d4f17a57 (cdmlib-apps): #5448 Import hybrid with more than 2 parents with protected titlecache
Patrick Plitzner
08:07 AM Revision 70f3e481 (cdmlib-apps): #5448 Add missing ranks to transformer
Patrick Plitzner

07/25/2016

06:02 PM bug #6019 (Closed): Link to changeset does not work yet
See http://dev.e-taxonomy.eu/redmine/issues/5420 which links to changeset r26712 in the comment from Cherian Andreas Müller
05:03 PM task #6003: Cleanup redmine users
Andreas Kohlbecker wrote:
> > * Maybe we should set Email notification for all locked users to "No events". I have d...
Andreas Kohlbecker
04:56 PM task #6003: Cleanup redmine users
Andreas Müller wrote:
> Open issues:
>
> * Are the following users required?
> * trac (id = 10; author of 114 w...
Andreas Kohlbecker
04:28 PM task #6003 (Resolved): Cleanup redmine users
Open issues:
* Are the following users required?
* trac (id = 10; author of 114 wiki_contents and wiki_content_v...
Andreas Müller
04:15 PM task #6003: Cleanup redmine users
I tested and updated all existing users with the following queries. Delete duplicates and set inactive users to locke... Andreas Müller
09:51 AM task #6003 (Closed): Cleanup redmine users
1. find users which are associated with tickets as *onwer*, *assignee*, etc
`select distinct u.* from issues i jo...
Andreas Kohlbecker
04:57 PM task #6006: setup automatic refresh of repositories in Redmine
Andreas Kohlbecker wrote:
>
> done for:
>
> * edit svn with `/var/svn/edit/hooks/user-post-commit`
Seems lik...
Andreas Müller
10:34 AM task #6006 (Closed): setup automatic refresh of repositories in Redmine
This needs to be done for all repos in redmine:
http://www.redmine.org/projects/redmine/wiki/HowTo_setup_automat...
Andreas Kohlbecker
04:43 PM Revision 9e2583cf (cdmlib-apps): #5448 Enhance taxon name check
Patrick Plitzner
04:42 PM Revision e3cf774c (cdmlib-apps): #5448 Fix import of families
Patrick Plitzner
03:17 PM feature request #6016 (Rejected): ICN rules in cdm validation framework implemented
ICN rules specially relevant the for algae names are to be collected in ticket #6015
The resulting list of rule ar...
Andreas Kohlbecker
03:16 PM Revision 212e328c (taxeditor): missed to commit changes in search manager
Katja Luther
01:36 PM bug #6007: Redmine: Wiki tables are not correctly mapped to new syntax
Andreas Kohlbecker wrote:
> tables seem not (yet) to be supported [https://redmine.org/projects/redmine/wiki/Redmin...
Andreas Kohlbecker
01:33 PM bug #6007: Redmine: Wiki tables are not correctly mapped to new syntax
tables seem not (yet) to be supported [https://redmine.org/projects/redmine/wiki/RedmineTextFormattingMarkdown#Table... Andreas Kohlbecker
01:21 PM bug #6007 (Worksforme): Redmine: Wiki tables are not correctly mapped to new syntax
As an example see http://dev.e-taxonomy.eu/redmine/projects/edit/wiki/TCS Andreas Müller
01:26 PM task #6008 (New): Fix broken UTF-8 characters
Write a rake script to fix broken characters:
â€
pages with broken broken characters:
* http://dev.e-ta...
Andreas Kohlbecker
10:14 AM task #6005 (Rejected): Create subprojects of EDIT platform components
The issues related to platform components which have their own git repository should be managed in a separate subproj... Andreas Kohlbecker
10:05 AM Revision 2f9b50b4 (cdmlib): Improve import report
Patrick Plitzner
09:54 AM task #6004 (Closed): Fix wiki page Roadmap
The trac query macros which have been used in trac need to be replaced by equivalent functionality in redemine:
Qu...
Andreas Kohlbecker
09:02 AM Revision 51188df7 (taxeditor): add session to bulk editor
Katja Luther
07:31 AM Revision a8474132 (taxeditor): fix check active session
Katja Luther

07/21/2016

09:14 PM Revision 3fac85e9 (cdmlib): #5251 Fix Incorrect taxon source attachments
Patrick Plitzner
02:31 PM feature request #5999 (Duplicate): Go directly to taxon page if only 1 result is returned for search
WG: Kann man die (in diem Kontext) unnütze Zwischenseite überspringen, wenn nur ein Treffer da ist?
For lucene s...
Andreas Müller

07/20/2016

10:17 PM bug #5676: Sensu does not show up if no author exists for secundum reference
Another example is "Elephantopus scaber" sensu FC-S & A&S which shows only "A&S" : http://portal.cybertaxonomy.org/f... Andreas Müller

07/19/2016

09:13 PM Revision 94fbdc99 (taxeditor): fix specimenSearchWizard
Katja Luther
05:16 PM Revision cef0a41d (cdmlib): Improved import report
Patrick Plitzner
05:05 PM Revision 28177ef7 (taxeditor): Revert version number
Patrick Plitzner
04:08 PM Revision 87846336 (taxeditor): small changes to adapt to library changes
Katja Luther
03:54 PM Revision c7415eab (cdmlib): Saving files before refreshing line endings
Patrick Plitzner
03:50 PM Revision 7f271868 (cdmlib): set the tests to ignore until the dna import is fixed again
Katja Luther
03:46 PM Revision 2c774ade (cdmlib): fix merge problems
Katja Luther
03:26 PM Revision 2c12c2ca (cdmlib): fix merge problems
Katja Luther
03:24 PM Revision 6a9f4423 (cdmlib): fix merge problem
Katja Luther
03:18 PM Revision 12885b9d (cdmlib): minor
Katja Luther
03:18 PM Revision b55933d9 (cdmlib): minor
Katja Luther
03:18 PM Revision 4dbe02a5 (cdmlib): missing changes in test
Katja Luther
02:53 PM Revision b506f564 (cdmlib): Avoid double dot at end of field unit titlecache
Patrick Plitzner
02:53 PM Revision 2ab5e217 (cdmlib): Improve ABCD import report
Patrick Plitzner
02:52 PM Revision bbdee7be (cdmlib): missing changes in taxonDao
Katja Luther
02:38 PM Revision c40b793d (cdmlib): minor
Katja Luther
02:37 PM Revision a2e0f20a (cdmlib): minor
Katja Luther
02:16 PM Revision e8682dfa (cdmlib): delete the excluded taxa parameter for UuidAndTitleCache of classificationService
Katja Luther
02:16 PM Revision 9eb8d3fa (cdmlib): Revert "getUuidAndTitleCache of classificationservice does not need the excluded taxa"
This reverts commit 1b553592f0055e0fec1ab3878236fa0ecad1bd17. Katja Luther
02:16 PM Revision b0d023b8 (cdmlib): hamonization of specimen import
Katja Luther
02:16 PM Revision be647596 (cdmlib): first implementation for harmonization of import of specimen data
Katja Luther
02:15 PM Revision 3ca48534 (cdmlib): sortindex updater utilities
Katja Luther
02:15 PM Revision 5c01c676 (cdmlib): getUuidAndTitleCache of classificationservice does not need the excluded taxa
Katja Luther
01:51 PM Revision 780bbb51 (taxeditor): comment the changes out, to fix jenkins
Katja Luther
01:43 PM Revision aea91dac (taxeditor): Fix transient services
Patrick Plitzner
12:52 PM Revision 7f5e75e1 (taxeditor): Update taxeditor test modul version
Andreas Müller
12:52 PM Revision a47c12b2 (taxeditor): #5849 Show class name + uuid for newly created empty entities in bulk
editors Patrick Plitzner
12:52 PM Revision f4a3fecd (taxeditor): #5975 fixed title cache of empty specimens
Patrick Plitzner
12:49 PM Revision aef2fdc5 (taxeditor): revert the changes in ImportManager
Katja Luther
12:22 PM Revision df601566 (taxeditor): translate some commands
Katja Luther

07/18/2016

05:05 PM Revision c8c58de5 (cdmlib-apps): #5448 change DB table name
Patrick Plitzner
05:05 PM Revision ae538f84 (cdmlib-apps): #5448 Fix import of hybrids due to merge conflicts
Patrick Plitzner
05:04 PM Revision d5e984f6 (cdmlib-apps): #5448 Fix potential NPEs
Patrick Plitzner
04:36 PM feature request #5983: Better parsing of hybrid names
Whitespace after species epithet hybrid sign implemented by r28704
Andreas Müller
04:34 PM feature request #5983 (Closed): Better parsing of hybrid names
With the "new" rules from #3868 it is now easier to distinguish hybrids names and hybrid formulas.
E.g. Abies al...
Andreas Müller
03:41 PM Revision 592b01d0 (cdmlib): Allow whitespace after species epithet hybrid sign
Andreas Müller
02:54 PM Revision 652fec24 (cdmlib): #3868 Handle notho ranks correctly while formatting
Andreas Müller
02:02 PM bug #5982 (Resolved): editing the protected titleCache set sometimes the focus to the name editor
The problem was that the propertyChange listener causes a refresh of the name editor and for an empty string a method... Katja Luther
01:57 PM bug #5982 (Closed): editing the protected titleCache set sometimes the focus to the name editor
sometimes editing the protected titleCache field yields to a focus change to the name editor text field. Therefore th... Katja Luther
01:52 PM Revision 1103732d (taxeditor): minor
Katja Luther
01:31 PM Revision 946091dd (taxeditor): missed to commit the LineBreakListener
Katja Luther
01:28 PM Revision dbbd527d (taxeditor): fix problem with wrong focus in name editor when editing name titlecache
Katja Luther
12:34 PM Revision a6b3a090 (cdmlib-apps): #5448 Import annotation infos
- hybrid formula
- ehrd, atlas, kart, flor, rl2015, wissk
Patrick Plitzner
10:44 AM Revision 6375d175 (cdmlib-apps): #5448 Fix title cache and LIE issues
Patrick Plitzner
10:44 AM Revision c0c4c356 (cdmlib-apps): #5448 Import cultivar as CultivarPlantName
Patrick Plitzner
10:40 AM Revision c98ea2df (cdmlib-apps): #5448 Add taxa to their respective families
Patrick Plitzner
10:40 AM Revision 308d3755 (cdmlib-apps): #5448 Import families
Patrick Plitzner
10:40 AM Revision 9e7339f0 (cdmlib-apps): #5448 javadoc
Patrick Plitzner
10:40 AM Revision 5e20e0f2 (cdmlib-apps): #5448 Fix possible NPE
Patrick Plitzner
10:40 AM Revision e138a102 (cdmlib-apps): #5448 Avoid clonig of all taxa for all classifications
Patrick Plitzner
10:40 AM Revision e85d547d (cdmlib-apps): #5448 Save concept relations
Patrick Plitzner
10:40 AM Revision a4854e75 (cdmlib-apps): #5448 typo
Patrick Plitzner
10:40 AM Revision 75733adf (cdmlib-apps): #5448 Set species epithet for species groups and aggregates
Patrick Plitzner
10:40 AM Revision 783428fc (cdmlib-apps): #5448 Move import of concept relationships to classification import
class
- there we already have the accepted taxa for the synonyms
Patrick Plitzner
10:12 AM Revision 8cb2c9bf (cdm-dataportal): upgrading selenium to 2.53.1
Andreas Kohlbecker
06:37 AM Revision 3c8d638c (cdmlib): Use title cache as fallback for specimen DTO for portal table
Patrick Plitzner

07/15/2016

01:36 PM feature request #5981 (In Progress): Add abbreviation to Rank "Cultivar"
Added abbreviation to csv file: r28685
Andreas Müller
01:32 PM feature request #5981 (Closed): Add abbreviation to Rank "Cultivar"
For formatting it is helpful to have the abbreviation. Maybe not always necessary if name is handled as CultivarName,... Andreas Müller
01:33 PM Revision 310f2e0f (cdmlib): #5981 Add abbreviation to Rank "Cultivar"
Andreas Müller
01:18 PM Revision f0572620 (cdmlib): Use EN_DASH in E+M Condensed Distribution
Andreas Müller

07/14/2016

05:04 PM feature request #5778 (Resolved): Update symbols for PresenceAbsenceTerms in existing databases
First version implemented (untested) r28683
Andreas Müller
03:45 PM feature request #5778: Update symbols for PresenceAbsenceTerms in existing databases
Differences are:
~~~
c3ee7048-15b7-4be1-b687-9ce9c1a669d6; endemic; e; ?
cef81d25-501c-48d8-bbea-542ec50de2c2; pres...
Andreas Müller
05:02 PM Revision 9a9a03a4 (cdmlib): #5778 implement first version for PAT symbols update
Andreas Müller
04:22 PM Revision 7c20414a (cdmlib): #5777 Replace dash type in PAT symbols
Andreas Müller
03:22 PM Revision e797826e (cdmlib): #5777 Fix symbol reading for PresenceAbsenceTerm csv
Andreas Müller
01:18 PM Revision a6adf906 (cdmlib): Add isInfraGenericButNotSpeciesGroup() method to Rank
Andreas Müller
12:02 PM Revision a3b2f701 (taxeditor): Empty concept view if an unsupported view is selected
Patrick Plitzner
08:59 AM Revision b4aea28a (cdmlib-apps): #5448 Set meaningful reference names
Patrick Plitzner
08:42 AM Revision 231d88bb (cdmlib-apps): Small additions to import
- import nomenclatural status extra information to ruleConsidered
- refresh title cache of taxa to correctly display...
Patrick Plitzner
08:40 AM Revision 17e07126 (taxeditor): Fix i18n properties
Patrick Plitzner

07/13/2016

01:38 PM feature request #5890 (Resolved): Implement auto-suggest for data portal
Andreas Müller
01:35 PM feature request #5890 (Feedback): Implement auto-suggest for data portal
Andreas Müller
12:28 PM Revision 7f861412 (taxeditor): Fix repository location for target platform
Patrick Plitzner
12:26 PM Revision 88d0b58a (cdmlib): Pass pageSize and pageNumber to list method
Patrick Plitzner

07/12/2016

01:45 PM feature request #5890 (Closed): Implement auto-suggest for data portal
Added a new ticket for weighted search results -> #5978
Patrick Plitzner

07/11/2016

05:30 PM feature request #5833 (Closed): Implement single cache strategy for references
Seems to be fixed. However, we definetly still need to improve the cache strategy. But this is handled in separate ti... Andreas Müller
05:07 PM bug #5976 (In Progress): Update sortIndex for potential nullValue sortIndexes
Andreas Müller
05:07 PM bug #5976: Update sortIndex for potential nullValue sortIndexes
First partial and untested implementation with r28672. PKNode still missing.
Andreas Müller
04:43 PM bug #5976 (Closed): Update sortIndex for potential nullValue sortIndexes
see #5955
Old data still needs to be updated. We already ran an updater but to be on the save side that really a...
Andreas Müller
05:06 PM Revision 58a29064 (cdmlib): #3925 First untested implementation for move excluded to TaxonNode
Andreas Müller
05:04 PM Revision 1e918bbc (cdmlib): #5976 First partial implementation for updateSortIndex
Andreas Müller
02:44 PM bug #5861 (Closed): Taxon appended phrase must not be in italics
Andreas Müller
02:44 PM bug #5861: Taxon appended phrase must not be in italics
Looks good. I think we can close the ticket.
Andreas Müller
02:33 PM bug #4965 (Resolved): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
more general solution (for all supported database types) implemented by r28671
Andreas Müller
02:30 PM Revision 32e833cb (cdmlib): #4965 Implement general solution for getDatabase() in
WrappedCdmDataSource Andreas Müller
01:58 PM Revision cb53bcb3 (taxeditor): add selection of classification to csvPrintExport
Katja Luther
12:31 PM Revision 7c452fe9 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther
12:31 PM Revision e6c333f3 (cdmlib): small changes in CsvNameExport
Katja Luther
10:54 AM Revision af1b3519 (cdmlib): It seems as if oclc number are no longer supported by the MobotOpenUrl api, test ignored
Andreas Kohlbecker
10:17 AM Revision 5e2ae553 (cdmlib): small change in CdvNameExport
Katja Luther

07/08/2016

09:07 PM feature request #5974 (Closed): Remove synonym relationships
Synonym relationships are not necessarily needed as a synonym always belongs to 1 explicit taxon. They are only neede... Andreas Müller
08:58 PM feature request #3925 (In Progress): Unplaced and excluded to TaxonNode
Andreas Müller
08:56 PM bug #5284 (In Progress): [UML] Replace Scope by DefinedTerm in PolytomousKey UML
Andreas Müller
08:52 PM feature request #5258 (In Progress): Accessed field for WebPages
Andreas Müller
08:46 PM feature request #5523 (In Progress): [DISCUSS] Do we need to distinguish homotypic and heterotypic synonym relationships
Andreas Müller
08:45 PM feature request #5634 (In Progress): Excluded note for excluded taxa /taxon nodes
Andreas Müller
08:42 PM feature request #5778 (In Progress): Update symbols for PresenceAbsenceTerms in existing databases
Andreas Müller
08:37 PM feature request #5921 (Resolved): Change symbol for congruence relationship.
Fixed by r28665
Andreas Müller
05:37 PM feature request #5921 (In Progress): Change symbol for congruence relationship.
Andreas Müller
08:36 PM Revision 2a562e3e (cdmlib): #5921 Change symbol for congruence relationship.
Andreas Müller
08:02 PM bug #5826: Clean up names with empty name descriptions
Some SQL statements for testing
~~~
SELECT db.id, dba.DTYPE, dba.feature_id, db.created
FROM DescriptionBase db IN...
Andreas Müller
08:00 PM bug #5826 (Resolved): Clean up names with empty name descriptions
Fixed by r28664
Andreas Müller
05:37 PM bug #5826 (In Progress): Clean up names with empty name descriptions
Andreas Müller
07:59 PM Revision 71757814 (cdmlib): #5826 Clean up names with empty name descriptions
Andreas Müller
06:19 PM feature request #5875 (Resolved): Add isDefault flag to DescriptionBase
Andreas Müller
06:19 PM feature request #5875: Add isDefault flag to DescriptionBase
Fixed by r28663
Andreas Müller
05:38 PM feature request #5875 (In Progress): Add isDefault flag to DescriptionBase
Andreas Müller
06:05 PM Revision 46c571ad (cdmlib): #5875 Add isDefault flag to DescriptionBase
Andreas Müller
05:34 PM feature request #5970 (Resolved): Implement allowOverride in CdmPreference
Andreas Müller
05:22 PM feature request #5970: Implement allowOverride in CdmPreference
fixed by [28661] and [28659]
Andreas Müller
02:48 PM feature request #5970 (In Progress): Implement allowOverride in CdmPreference
Andreas Müller
02:48 PM feature request #5970 (Closed): Implement allowOverride in CdmPreference
if false, the preference should not be overridden by local preferences
if true local preferences override databa...
Andreas Müller
05:30 PM Revision f974bf29 (cdmlib): #5970 Add allowOverride
Andreas Müller
05:30 PM Revision 7cfc6254 (cdmlib): Add schema updater for v4.0-v4.1
Andreas Müller
05:25 PM Revision b4e979be (cdmlib): #5970 Add allowOverride and refactor CdmPreference
Andreas Müller
04:30 PM feature request #5972 (Closed): Prevent user from unwanted author and reference updates
From time to time it happens that users press the "edit" button for editing authors or references.
This is usual...
Andreas Müller
03:36 PM Revision d28e03d4 (cdm-dataportal): fix merge conflict
Patrick Plitzner
02:53 PM feature request #5971 (Closed): Implement database wide CdmPreference writing
Similar to TaxEditor preferences CDM Preferences need to be inserted/updated.
In the new "Admin" main menu we ne...
Andreas Müller
02:37 PM feature request #5969 (Closed): Implement CdmPreference reading for database preferences
Start with NomenclaturalCode. The values are available through IPreferenceService.
See also #3958, #5971
Andreas Müller
02:35 PM Revision 1396c2bc (cdmlib): #3958 Latest update to IPreferenceService classes
Andreas Müller
01:36 PM Revision b13fab25 (cdmlib): Add TaxonBase.secMicroReference to test dtd
Andreas Müller
01:10 PM bug #5967 (Closed): Adapt default update site to production update site.
Adapt default update site to http://cybertaxonomy.eu/download/taxeditor/update/stable/. Currently it is http://cybert... Andreas Müller
12:57 PM Revision 6bb0a296 (cdmlib): Unignore MobotOpenUrlServices
Andreas Müller
12:49 PM Revision 581ecfc6 (cdmlib): Cleanup
Andreas Müller
10:21 AM bug #5965 (Worksforme): Check if authentication works correctly after datasource change
Hallo,
bei Caryophyllales_spp gibt’s folgende Meldung (Rubiaceae_Mex) funktioniert.
Herzlichen Gruß
Walter
...
Andreas Müller
09:51 AM Revision 0ac706e3 (taxeditor): fixing p2 repo urls for indigo releases and nebula
Andreas Kohlbecker
09:42 AM Revision b0629834 (taxeditor): remove accidentally comitted source information
Katja Luther

07/07/2016

04:55 PM Revision e7031ddb (taxeditor): Fix some typos in German translation
Andreas Müller
04:22 PM Revision e12efde6 (cdmlib): NameParser: allow letter for issue
Andreas Müller
04:07 PM Revision fd8908c4 (taxeditor): Add missing transient service method
Patrick Plitzner
02:57 PM Revision 548e618e (cdmlib): Add javadoc
Patrick Plitzner
02:46 PM Revision 73784421 (cdmlib): Merge branch 'develop' into csvExport
Patrick Plitzner
02:14 PM Revision f95ea870 (cdm-dataportal): Merge branch 'csvExport' into develop
Patrick Plitzner
02:09 PM Revision 176e260a (cdm-dataportal): Merge branch 'develop' into csvExport
# Conflicts:
# modules/cdm_dataportal/cdm_csv_export/cdm_csv_export.module
# modules/cdm_dataportal/cdm_dataportal.mo...
Patrick Plitzner
01:45 PM bug #5964 (New): It is not possible to search for hybrid formulas in taxon search
I tested this with Festuca × Lolium
see also #5832 (same ticket for TaxEditor)
Patrick Plitzner
01:39 PM Revision 24f57e45 (cdm-dataportal): #5890 Fix auto-suggest for taxon search
- use classification uuids instead of root node uuids for taxontree
retrieval
Patrick Plitzner
01:36 PM Revision 3b2b4319 (cdmlib): #5890 pass classification uuid instead of root node uuid
Patrick Plitzner
01:03 PM Revision 1788e0c6 (cdmlib-apps): Adapt cdmlib-app poms to new version
Andreas Müller

07/06/2016

06:36 PM Revision c4e0c8dd (cdmlib): name
Patrick Plitzner
06:34 PM Revision f35d3f4a (cdm-dataportal): #5890 Handle taxon name parsing in service method -> only pass taxon
name Patrick Plitzner
05:22 PM Revision ef7506b3 (cdmlib): #5890 Evaluate taxon node based on selected cassification or taxon
Patrick Plitzner
05:06 PM Revision 15ee8449 (taxeditor): Merge branch 'release/4.2.0' into develop
jenkins
05:06 PM Revision b550797b (taxeditor): Merge branch 'release/4.2.0'
jenkins
04:59 PM Revision 02c19c2f (cdm-server): Merge branch 'release/4.2.0' into develop
jenkins
04:59 PM Revision 7a334694 (cdm-server): updating poms for branch'release/4.2.0' with non-snapshot versions
jenkins
04:58 PM Revision f5421ac8 (cdm-server): setting sourceEncoding to UTF-8
Andreas Kohlbecker
04:58 PM Revision 972cd222 (cdm-server): setting sourceEncoding to UTF-8
Andreas Kohlbecker
04:54 PM Revision f37484b2 (taxeditor): Revert "fixing cdm version directly in master for release 4.1.1"
This reverts commit 8a6eac640318fe5a4e4b20a44023d41686263123. Andreas Kohlbecker
04:54 PM Revision 81e75c99 (taxeditor): Revert "fixing cdm version directly in master for release 4.1.1"
This reverts commit 04baa12cfedc6eaadd8a1b3061ad261f11239c28. Andreas Kohlbecker
04:15 PM Revision 2fa67737 (cdm-webapp): Merge branch 'release/4.2.0' into develop
jenkins
04:14 PM Revision 6f5924a5 (cdm-webapp): updating poms for branch'release/4.2.0' with non-snapshot versions
jenkins
04:14 PM Revision d38edbb7 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.2.0
jenkins
04:13 PM Revision 41fba962 (cdm-vaadin): Merge branch 'release/4.2.0' into develop
jenkins
04:13 PM Revision d6ed3b0b (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
04:11 PM Revision 78dfc550 (cdm-dataportal): Merge branch 'release/4.2.0' into develop
jenkins
04:11 PM Revision 6fe028f7 (cdm-dataportal): updating poms for branch'release/4.2.0' with non-snapshot versions
jenkins
04:11 PM Revision b635e0fe (cdm-dataportal): release-preparation: production level css
jenkins
04:11 PM Revision c61e7f63 (cdm-vaadin): updating poms for branch'release/4.2.0' with non-snapshot versions
jenkins
04:11 PM Revision a674c773 (cdm-vaadin): jenkins bumping cdmlib.version to 4.2.0
jenkins
04:10 PM Revision 4a765dc3 (cdmlib): Updating develop poms back to pre merge state
jenkins
04:10 PM Revision f1375c32 (cdmlib): Merge branch 'master' into develop
jenkins
04:10 PM Revision 31f1c217 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
04:10 PM Revision a626f321 (cdmlib): Merge branch 'release/4.2.0'
jenkins
03:53 PM Revision a1287e86 (cdmlib): updating poms for branch'release/4.2.0' with non-snapshot versions
jenkins
03:43 PM Revision 4c95b274 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.2.0-SNAPSHOT
jenkins
03:43 PM Revision 6769fd63 (cdm-webapp): updating poms for 4.3.0-SNAPSHOT development
jenkins
03:43 PM Revision abf881f3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.3.0-SNAPSHOT
jenkins
03:42 PM Revision 3c928d6e (taxeditor): Updated version in pom / project files to taxeditor version : 4.3.0-SNAPSHOT and cdmlib version : 4.3.0-SNAPSHOT
jenkins
03:42 PM Revision 5b574d18 (taxeditor): Updated version in pom / project files to taxeditor version : 4.2.0 and cdmlib version : 4.2.0
jenkins
03:41 PM Revision 57c85295 (cdm-vaadin): jenkins bumping cdmlib.version to 4.2.0-SNAPSHOT
jenkins
03:41 PM Revision 27d656cb (cdm-vaadin): updating poms for 4.3.0-SNAPSHOT development
jenkins
03:41 PM Revision 05ccc852 (cdm-vaadin): jenkins bumping cdmlib.version to 4.3.0-SNAPSHOT
jenkins
03:41 PM Revision a171c75f (cdm-dataportal): updating poms for 4.3.0-SNAPSHOT development
jenkins
03:41 PM Revision 3a533d9d (cdm-server): updating poms for 4.3.0-SNAPSHOT development
jenkins
03:38 PM Revision 08551b9a (cdmlib): updating poms for 4.3.0-SNAPSHOT development
jenkins
03:26 PM feature request #5833 (Resolved): Implement single cache strategy for references
Andreas Müller
02:57 PM Revision b9e54ec8 (cdmlib): #5960 Use abbrevTitle for reference parsing
Andreas Müller
02:57 PM Revision b4f7840c (cdmlib): #5958 Fix NPE in findTaxaByName with missing clazz param (II)
Andreas Müller
02:41 PM Revision a1b73fc5 (cdmlib): minor
Katja Luther
02:41 PM Revision 83b68cf9 (cdmlib): fix failing editor test because of updateSortindex in mergeEntityListener
Katja Luther
02:30 PM Revision e8074ec5 (cdm-dataportal): #5890 Pass classification uuid and taxon uuid to csv export
Patrick Plitzner
02:11 PM Revision c9992d6a (taxeditor): minor
Katja Luther
02:11 PM Revision a1127475 (cdmlib): #5958 Fix NPE in findTaxaByName with missing clazz param
Andreas Müller
02:08 PM Revision dfd55109 (taxeditor): smaller changes for specimen import
Katja Luther
02:08 PM Revision 23cf0e8a (taxeditor): minor
Katja Luther
02:02 PM Revision bd9c39e8 (cdmlib): Fix compile error in Print Publisher
Andreas Müller
01:50 PM Revision e27bf64b (taxeditor): Fix transient services
Andreas Müller
01:34 PM Revision a9f6d017 (cdmlib-apps): #5958 fix findByName in pesi
Andreas Müller
01:25 PM Revision 87971ac8 (taxeditor): set failing test to ignore see ticket #5959
Katja Luther
01:23 PM Revision 9aa22b7e (cdmlib-apps): #5958 fix findByName in pesi
Andreas Müller
01:15 PM Revision f2babe22 (cdmlib): cleaning up and hamonizing contoller code
Andreas Kohlbecker
12:43 PM Revision 891d65aa (cdmlib): #5958 fix failing tests
Andreas Müller
12:14 PM Revision 3cf47767 (cdmlib): #5958 Implement name part search as web service
Andreas Müller
11:24 AM bug #5191 (Worksforme): TransmissionEngineDistribution stops before it is 100% done
seems to be fixed by one the latest changes (most probably aadb17f) :
* 9b7db8d TransmissionEngineDistribution: sol...
Andreas Kohlbecker
09:37 AM Revision 3de12c0d (cdm-dataportal): #5793 using new settings field status_glue to allow flexible configuration of the ditribution hierachy
Andreas Kohlbecker
08:32 AM Revision a180fd4f (cdmlib): #5957 Fix empty treeindexes
Andreas Müller
01:35 AM Revision 29a5f57c (cdmlib): #5957 Fix for facultative rank range
Andreas Müller
01:18 AM Revision 0429965c (cdmlib-apps): #5822 / #5892 Mexico rubiaceae import
Andreas Müller
01:16 AM Revision e49e778f (cdmlib-apps): Update eflora and pesi to v4.2.0
Andreas Müller
12:55 AM Revision 63f513d9 (cdmlib): #5957 mplement groupByHigherTaxon webservice
Andreas Müller
12:39 AM Revision 5ccb7fa7 (cdmlib): Cleanup
Andreas Müller

07/05/2016

06:01 PM Revision 4bfe18f9 (cdm-dataportal): #5768 removing whitespace
Andreas Kohlbecker
05:57 PM Revision f15267b0 (cdm-dataportal): function doc
Andreas Kohlbecker
04:38 PM Revision 834fb28c (cdm-dataportal): #5793 reverting last solution and using new defaults
Andreas Kohlbecker
04:12 PM Revision 88e8a1fe (cdm-dataportal): #5845 removing whitespace
Andreas Kohlbecker
04:06 PM feature request #5956 (Closed): Improve functionality and UX for (children display in) breadcrumb navigation - 2
successor of #5852
1) remove transparency (needs to be discussed if needed): moved to #6312
2) mobile devic...
Andreas Kohlbecker
04:00 PM bug #5861: Taxon appended phrase must not be in italics
Replying to [[comment3|a.mueller]]:
> Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/d...
Andreas Kohlbecker
03:59 PM Revision 379798fa (cdm-dataportal): #5861 missing css for appended-phrase
Andreas Kohlbecker
03:54 PM Revision d75e1586 (cdm-dataportal): #5904 fixing css for zen theme
Andreas Kohlbecker
03:06 PM Revision 13aed6c3 (cdmlib): set failing tests to ignore
Katja Luther
03:03 PM Revision 08059fd5 (cdmlib): modernizing HttpClient usage in isServiceAvailable() method
Andreas Kohlbecker
03:02 PM Revision d2acf582 (taxeditor): minor
Katja Luther
01:59 PM Revision 04b9479a (cdmlib): fix failing Polytomouskey test
Katja Luther
01:45 PM feature request #5947: Type information for same field unit should be handled in one line
"Or even better with abbreviate type status (e.g. HT instead of Holotype). "
Type status should not be abbreviated. ...
Wolf-Henning Kusber
10:02 AM feature request #5947 (New): Type information for same field unit should be handled in one line
Currently each type designation has one line, but shouldn't if both types have the same field unit.
Example: htt...
Andreas Müller
12:52 PM Revision 357386e4 (cdmlib): minor
Andreas Müller
12:52 PM Revision a0ee91b9 (cdmlib): Cleanup
Andreas Müller
12:00 PM Revision b467476c (cdmlib): #5681: move removeNullValueFromCollections to PostMergeEntityListener
Katja Luther
11:47 AM feature request #5952 (Closed): Second cache field for specimen (identityCache)
for more information see #5951
Andreas Müller
11:46 AM feature request #5951 (New): Add collector, field number and collection to specimen search label
Currently the specimen search uses the specimen titleCache as search string. In the titleCache the collector, field n... Andreas Müller
11:44 AM Revision 7042800d (cdmlib): isServiceAvailable test for MobotOpenUrlServiceWrapperTest
Andreas Kohlbecker
11:29 AM feature request #5950 (Duplicate): Add duplicate method for type designations
Often users want to enter type designation data for a taxon name for multiple types (e.g. holotype and some isotypes)... Andreas Müller
11:14 AM Revision 5f7cb15c (cdmlib): new method removeNullValues in CdmPreDataChangeListener
Katja Luther
11:14 AM Revision 541f08b0 (cdmlib): remove updateSortindex and move removeNullValues to the mergeListener
Katja Luther
10:34 AM Revision d3752fac (cdmlib): TransmissionEngineDistribution: setting lower min heap requirements for tests
Andreas Kohlbecker
10:28 AM bug #5948 (Closed): supress protologue icon if according media uri is missing
http://api.cybertaxonomy.org/rubiaceae_mexico/portal/name/ea5142cd-8c09-4b0b-b57a-8a1e2c869be0/taxonNameDescriptions.... Andreas Kohlbecker
10:06 AM Revision 4bcc10d3 (cdmlib): TransmissionEngineDistribution avoiding weired exceptions in tests
Andreas Kohlbecker
09:37 AM Revision 9b7db8db (cdmlib): TransmissionEngineDistribution: solving problems with excessive heap consumption
Andreas Kohlbecker
09:37 AM Revision 0d0d2537 (cdmlib): DynamicBatch: a JVM resources aware batch manager
Andreas Kohlbecker
09:37 AM Revision aadb17f4 (cdmlib): #5191 fixing process monitor updating in TransmissionEngine
this is most probably not fixing the ticket but helps providing more reliable monitoring Andreas Kohlbecker

07/04/2016

11:34 PM Revision eee5ea0d (taxeditor): #5946 improve determination event label provider for unlabeled units or taxa
Andreas Müller
03:45 PM Revision e519dde1 (taxeditor): #5946 improve determination event label provider for unlabeled units or taxa
Andreas Müller
03:33 PM Revision 8eea1bc4 (taxeditor): #5930: disable text fields if no language is selected.
Katja Luther
03:21 PM Revision 1d6463ca (taxeditor): #4018: don't allow to finish, if no language is selected, quick fix
Katja Luther
03:06 PM bug #5945 (Closed): Deduplicate results from termloading by class
Andreas Müller
03:06 PM bug #5945: Deduplicate results from termloading by class
Work around seems to work in TaxEditor
Andreas Müller
01:52 PM Revision d63fc1f3 (taxeditor): #5946 Implement/fix referencing objets label provider for TaxonNode and DerivationEvent
Andreas Müller

07/01/2016

02:46 PM Revision 82e3ca05 (taxeditor): fix save symbol of defined term
Katja Luther
02:33 PM Revision 4344fddf (cdmlib): Adapt test dataset loading to standard path
Andreas Müller
02:13 PM Revision ec3ff238 (cdmlib): Fix dataset issue in persistence test and clean up
Andreas Müller
01:30 PM Revision 6c56ee87 (taxeditor): #5908: add a default representation to a term with no representation
Katja Luther
01:15 PM Revision 969dbe3e (cdmlib): #5678: fix deletion of FeatureNodes and minor changes
Katja Luther
01:15 PM Revision 794708a7 (cdmlib): advanced MediaDeletionConfigurator
Katja Luther
01:10 PM Revision a1bd384c (taxeditor): minor
Katja Luther
01:09 PM Revision 59e6f340 (taxeditor): #5678. fix deletion of feature nodes
Katja Luther
12:53 PM bug #5945 (Resolved): Deduplicate results from termloading by class
Andreas Müller
12:53 PM bug #5945: Deduplicate results from termloading by class
Fixed by r28535 / commit:f7a01923
Andreas Müller
12:46 PM bug #5945 (Closed): Deduplicate results from termloading by class
The general problem is described in #5871
This ticket is a workaround until the general problem has been solved
...
Andreas Müller
12:51 PM Revision 4cbd2815 (cdmlib): Clean up
Andreas Müller
12:50 PM Revision f7a01923 (cdmlib): #5945 Deduplicate results from termloading by class
Andreas Müller
11:41 AM task #5943 (Closed): back to search button/link should go into a drupal block
The `admin/config/cdm_dataportal/settings/layout/taxon` offers the option:
~~~
[x] Show Back to search results ...
Andreas Kohlbecker
11:21 AM Revision 1bc810db (taxeditor): #4630: fix search of bulkeditor if underlying data have changed
Katja Luther
11:14 AM feature request #5942 (New): Advanced Search filter to exlude Distributions with status absent
A filter option should be added to the Advanced Search exclude Distributions with status absent. This should be part ... Andreas Kohlbecker
10:59 AM Revision a237ff3d (cdm-dataportal): missing whitespace in translation
Andreas Kohlbecker

06/30/2016

04:59 PM Revision a69df67a (cdm-dataportal): translation po files normalized for poedit
Andreas Kohlbecker
04:51 PM Revision 41cc9dd1 (cdmlib): #5941 Fix representation with missing language in Classbridge
Andreas Müller
04:46 PM Revision ab089d7d (cdm-dataportal): fixing Plural-Forms header in po file
Andreas Kohlbecker
04:34 PM Revision e8f96965 (taxeditor): Fix compile errors in transient services for loadByIds
Andreas Müller
04:19 PM Revision 579c485d (cdm-dataportal): rename search tab factual data >> content category
Andreas Kohlbecker
01:43 PM Revision 888ca58b (taxeditor): if multilanguage text isEmpty translation wizard does not open
Katja Luther
01:35 PM Revision e3961ec3 (taxeditor): fix NPE in translation wizard
Katja Luther
01:09 PM feature request #5936: Multilanguage Support for TextData
Hallo,
mir fällt gerade auf, dass das Problem bei Espanol sein könnte, dass diese Sprache eigentlich nur über den C...
Andreas Müller
12:38 PM feature request #5936 (New): Multilanguage Support for TextData
It seems that TextData has no multi-language support yet in Dataportal.
Hallo,
die Eingabe von 2 Sprachve...
Andreas Müller
01:08 PM bug #5938 (Closed): distribution and specimen maps can not be used on the same page

In tab-less taxon pages with distribution and georeferenced specimens the specimen map is broken.
test cases:...
Andreas Kohlbecker
12:00 PM Revision 1ec74f53 (cdmlib): refactoring listByIds to loadByIds
Andreas Kohlbecker
09:44 AM Revision bee783cb (taxeditor): fix transient services
Katja Luther
09:13 AM Revision e20defe1 (cdmlib): fix getUuidAndTitleCache for pattern with ?
Katja Luther
 

Also available in: Atom