Activity
From 06/29/2016 to 07/28/2016
07/28/2016
- 10:32 PM Revision ccc14670 (taxeditor): #5751 Remove c3p0 dependency
- 04:02 PM Revision 0515d9fc (cdmlib): #5751 Adaptions to cdmlib poms to replace explicit drivers by cdmlib-db
- ... Replace explicit DB drivers versioning from cdmlib-parent pom
Forgot to add in previous merge - 03:50 PM Revision 1c56dd72 (taxeditor): #5751 Remove explicit dependencies to DB drivers by cdmlib-db in poms
- 03:33 PM Revision 9824b51b (cdm-server): #5751 Remove explicit dependencies to DB drivers by cdmlib-db in CDM
- Server
- 03:23 PM Revision 6b693bbc (cdmlib): #5751 Adaptions to cdmlib poms to replace explicit drivers by cdmlib-db
- * Add c3po and mchange-commons-java to cdmlib-db
* Replace explicit DB drivers from cdmlib-persistence.pom by cdmlib... - 12:55 PM Revision 7247a62e (cdmlib-apps): #6000 Use new CASUAL Method instead of deprecated INTRODUCED_ADVENTITIOUS
- 12:40 PM Revision 68c7d536 (cdmlib): #6000 fix missing default color
- 10:34 AM feature request #5999 (Rejected): Go directly to taxon page if only 1 result is returned for search
- This suggestion has already been discusses in the past, see #5088 and was rejected
07/27/2016
- 05:46 PM Revision 145fc7c6 (cdmlib): #6000 Add static methods and uuids for new PAT terms
- 05:27 PM Revision 92ef0c45 (cdmlib-apps): Fixing strange dependency problem related to spring-orm version
- 05:13 PM Revision 5044803f (cdmlib): #6000 Add some new PresenceAbsenceTerms from Cyprus and Cuba
- * Invasive changed to naturalized invasive (Cyprus, according to Pysek)
* naturalized invasive: presence questionab... - 05:13 PM Revision 8bec79dd (cdmlib-apps): Initial set of classes for the IAPT import
- 05:09 PM Revision fd5fd2c8 (cdmlib): #6000 Use new CASUAL Method instead of derpeacted INTRODUCED_ADVENTITIOUS
- 01:38 PM Revision cb67ca59 (cdmlib): #6000 Unify some PresenceAbsenceTerms (merge naturalized, rename adventitious -> casual, etc)
- 12:03 PM task #6021: Add 'mention' functionality
- Personally I am not so sure if we really need this.
- 10:50 AM Revision 90ec6419 (cdmlib-apps): removing build.xml
- 10:50 AM Revision 2b46bf5b (cdmlib-apps): gitignore
- 09:19 AM Revision 1e60fc7c (cdmlib-apps): #5448 Add "distinct" to SQL query as family table contains duplicate
- rows
07/26/2016
- 05:13 PM Revision 35b4c4a3 (cdmlib-apps): removing build.xml
- 05:12 PM Revision 8c25844f (cdmlib-apps): gitignore
- 05:09 PM Revision 19369d9b (cdmlib-apps): Fixing repository settings and project group id
- 05:09 PM Revision 6ab8444c (cdmlib-apps): Fixing repository settings and project group id
- 03:53 PM Revision e38554be (taxeditor): line endings
- 03:30 PM Revision 310262a2 (cdmlib-apps): #5488 Improve import of family taxa
- - Load families in related object methods
- 12:01 PM task #6022 (New): Target Version select list hardly usable
- We have a lot of Versions (formerly Milstoneds on trac), The select list in the issue editor is too long to easily fi...
- 11:57 AM task #6021 (Rejected): Add 'mention' functionality
- see
* **https://www.redmine.org/plugins/rm_user_mentions**
* http://www.redmine.org/issues/13919
* http://www.r... - 11:45 AM task #6020 (Closed): Consider replacing custom field 'keywords' by redmine_tags
- custom issue fields cannot be edited via the bulk edit function.
Maybe the [redmine_tags plugin](https://github.com/... - 11:10 AM Revision e1d0ff38 (cdmlib-apps): #5448 Fix hybrid import where specific epithets are not from same genus
- 11:09 AM Revision 04d95229 (cdmlib-apps): #5448 Add family rank
- 11:08 AM task #6004 (Resolved): Fix wiki page Roadmap
- I found a solution by making use of the [redmine_wiki_lists plugin](https://www.redmine.org/plugins/redmine_wiki_lis...
- 09:09 AM Revision a02150f9 (cdmlib-apps): #5448 Fix hybrid import where specific epithets are not from same genus
- 09:01 AM Revision cc9d28ec (cdmlib-apps): #5448 Pass rank and nomenclatural code to name parser creation
- 08:22 AM task #6006: setup automatic refresh of repositories in Redmine
- Andreas Müller wrote:
> Andreas Kohlbecker wrote:
> >
> > done for:
> >
> > * edit svn with `/var/svn/edit/hoo... - 08:11 AM Revision d4f17a57 (cdmlib-apps): #5448 Import hybrid with more than 2 parents with protected titlecache
- 08:07 AM Revision 70f3e481 (cdmlib-apps): #5448 Add missing ranks to transformer
07/25/2016
- 06:02 PM bug #6019 (Closed): Link to changeset does not work yet
- See http://dev.e-taxonomy.eu/redmine/issues/5420 which links to changeset r26712 in the comment from Cherian
- 05:03 PM task #6003: Cleanup redmine users
- Andreas Kohlbecker wrote:
> > * Maybe we should set Email notification for all locked users to "No events". I have d... - 04:56 PM task #6003: Cleanup redmine users
- Andreas Müller wrote:
> Open issues:
>
> * Are the following users required?
> * trac (id = 10; author of 114 w... - 04:28 PM task #6003 (Resolved): Cleanup redmine users
- Open issues:
* Are the following users required?
* trac (id = 10; author of 114 wiki_contents and wiki_content_v... - 04:15 PM task #6003: Cleanup redmine users
- I tested and updated all existing users with the following queries. Delete duplicates and set inactive users to locke...
- 09:51 AM task #6003 (Closed): Cleanup redmine users
- 1. find users which are associated with tickets as *onwer*, *assignee*, etc
`select distinct u.* from issues i jo... - 04:57 PM task #6006: setup automatic refresh of repositories in Redmine
- Andreas Kohlbecker wrote:
>
> done for:
>
> * edit svn with `/var/svn/edit/hooks/user-post-commit`
Seems lik... - 10:34 AM task #6006 (Closed): setup automatic refresh of repositories in Redmine
- This needs to be done for all repos in redmine:
http://www.redmine.org/projects/redmine/wiki/HowTo_setup_automat... - 04:43 PM Revision 9e2583cf (cdmlib-apps): #5448 Enhance taxon name check
- 04:42 PM Revision e3cf774c (cdmlib-apps): #5448 Fix import of families
- 03:17 PM feature request #6016 (Rejected): ICN rules in cdm validation framework implemented
- ICN rules specially relevant the for algae names are to be collected in ticket #6015
The resulting list of rule ar... - 03:16 PM Revision 212e328c (taxeditor): missed to commit changes in search manager
- 01:36 PM bug #6007: Redmine: Wiki tables are not correctly mapped to new syntax
- Andreas Kohlbecker wrote:
> tables seem not (yet) to be supported [https://redmine.org/projects/redmine/wiki/Redmin... - 01:33 PM bug #6007: Redmine: Wiki tables are not correctly mapped to new syntax
- tables seem not (yet) to be supported [https://redmine.org/projects/redmine/wiki/RedmineTextFormattingMarkdown#Table...
- 01:21 PM bug #6007 (Worksforme): Redmine: Wiki tables are not correctly mapped to new syntax
- As an example see http://dev.e-taxonomy.eu/redmine/projects/edit/wiki/TCS
- 01:26 PM task #6008 (New): Fix broken UTF-8 characters
- Write a rake script to fix broken characters:
â€
pages with broken broken characters:
* http://dev.e-ta... - 10:14 AM task #6005 (Rejected): Create subprojects of EDIT platform components
- The issues related to platform components which have their own git repository should be managed in a separate subproj...
- 10:05 AM Revision 2f9b50b4 (cdmlib): Improve import report
- 09:54 AM task #6004 (Closed): Fix wiki page Roadmap
- The trac query macros which have been used in trac need to be replaced by equivalent functionality in redemine:
Qu... - 09:02 AM Revision 51188df7 (taxeditor): add session to bulk editor
- 07:31 AM Revision a8474132 (taxeditor): fix check active session
07/21/2016
- 09:14 PM Revision 3fac85e9 (cdmlib): #5251 Fix Incorrect taxon source attachments
- 02:31 PM feature request #5999 (Duplicate): Go directly to taxon page if only 1 result is returned for search
- WG: Kann man die (in diem Kontext) unnütze Zwischenseite überspringen, wenn nur ein Treffer da ist?
For lucene s...
07/20/2016
- 10:17 PM bug #5676: Sensu does not show up if no author exists for secundum reference
- Another example is "Elephantopus scaber" sensu FC-S & A&S which shows only "A&S" : http://portal.cybertaxonomy.org/f...
07/19/2016
- 09:13 PM Revision 94fbdc99 (taxeditor): fix specimenSearchWizard
- 05:16 PM Revision cef0a41d (cdmlib): Improved import report
- 05:05 PM Revision 28177ef7 (taxeditor): Revert version number
- 04:08 PM Revision 87846336 (taxeditor): small changes to adapt to library changes
- 03:54 PM Revision c7415eab (cdmlib): Saving files before refreshing line endings
- 03:50 PM Revision 7f271868 (cdmlib): set the tests to ignore until the dna import is fixed again
- 03:46 PM Revision 2c774ade (cdmlib): fix merge problems
- 03:26 PM Revision 2c12c2ca (cdmlib): fix merge problems
- 03:24 PM Revision 6a9f4423 (cdmlib): fix merge problem
- 03:18 PM Revision 12885b9d (cdmlib): minor
- 03:18 PM Revision b55933d9 (cdmlib): minor
- 03:18 PM Revision 4dbe02a5 (cdmlib): missing changes in test
- 02:53 PM Revision b506f564 (cdmlib): Avoid double dot at end of field unit titlecache
- 02:53 PM Revision 2ab5e217 (cdmlib): Improve ABCD import report
- 02:52 PM Revision bbdee7be (cdmlib): missing changes in taxonDao
- 02:38 PM Revision c40b793d (cdmlib): minor
- 02:37 PM Revision a2e0f20a (cdmlib): minor
- 02:16 PM Revision e8682dfa (cdmlib): delete the excluded taxa parameter for UuidAndTitleCache of classificationService
- 02:16 PM Revision 9eb8d3fa (cdmlib): Revert "getUuidAndTitleCache of classificationservice does not need the excluded taxa"
- This reverts commit 1b553592f0055e0fec1ab3878236fa0ecad1bd17.
- 02:16 PM Revision b0d023b8 (cdmlib): hamonization of specimen import
- 02:16 PM Revision be647596 (cdmlib): first implementation for harmonization of import of specimen data
- 02:15 PM Revision 3ca48534 (cdmlib): sortindex updater utilities
- 02:15 PM Revision 5c01c676 (cdmlib): getUuidAndTitleCache of classificationservice does not need the excluded taxa
- 01:51 PM Revision 780bbb51 (taxeditor): comment the changes out, to fix jenkins
- 01:43 PM Revision aea91dac (taxeditor): Fix transient services
- 12:52 PM Revision 7f5e75e1 (taxeditor): Update taxeditor test modul version
- 12:52 PM Revision a47c12b2 (taxeditor): #5849 Show class name + uuid for newly created empty entities in bulk
- editors
- 12:52 PM Revision f4a3fecd (taxeditor): #5975 fixed title cache of empty specimens
- 12:49 PM Revision aef2fdc5 (taxeditor): revert the changes in ImportManager
- 12:22 PM Revision df601566 (taxeditor): translate some commands
07/18/2016
- 05:05 PM Revision c8c58de5 (cdmlib-apps): #5448 change DB table name
- 05:05 PM Revision ae538f84 (cdmlib-apps): #5448 Fix import of hybrids due to merge conflicts
- 05:04 PM Revision d5e984f6 (cdmlib-apps): #5448 Fix potential NPEs
- 04:36 PM feature request #5983: Better parsing of hybrid names
- Whitespace after species epithet hybrid sign implemented by r28704
- 04:34 PM feature request #5983 (Closed): Better parsing of hybrid names
- With the "new" rules from #3868 it is now easier to distinguish hybrids names and hybrid formulas.
E.g. Abies al... - 03:41 PM Revision 592b01d0 (cdmlib): Allow whitespace after species epithet hybrid sign
- 02:54 PM Revision 652fec24 (cdmlib): #3868 Handle notho ranks correctly while formatting
- 02:02 PM bug #5982 (Resolved): editing the protected titleCache set sometimes the focus to the name editor
- The problem was that the propertyChange listener causes a refresh of the name editor and for an empty string a method...
- 01:57 PM bug #5982 (Closed): editing the protected titleCache set sometimes the focus to the name editor
- sometimes editing the protected titleCache field yields to a focus change to the name editor text field. Therefore th...
- 01:52 PM Revision 1103732d (taxeditor): minor
- 01:31 PM Revision 946091dd (taxeditor): missed to commit the LineBreakListener
- 01:28 PM Revision dbbd527d (taxeditor): fix problem with wrong focus in name editor when editing name titlecache
- 12:34 PM Revision a6b3a090 (cdmlib-apps): #5448 Import annotation infos
- - hybrid formula
- ehrd, atlas, kart, flor, rl2015, wissk - 10:44 AM Revision 6375d175 (cdmlib-apps): #5448 Fix title cache and LIE issues
- 10:44 AM Revision c0c4c356 (cdmlib-apps): #5448 Import cultivar as CultivarPlantName
- 10:40 AM Revision c98ea2df (cdmlib-apps): #5448 Add taxa to their respective families
- 10:40 AM Revision 308d3755 (cdmlib-apps): #5448 Import families
- 10:40 AM Revision 9e7339f0 (cdmlib-apps): #5448 javadoc
- 10:40 AM Revision 5e20e0f2 (cdmlib-apps): #5448 Fix possible NPE
- 10:40 AM Revision e138a102 (cdmlib-apps): #5448 Avoid clonig of all taxa for all classifications
- 10:40 AM Revision e85d547d (cdmlib-apps): #5448 Save concept relations
- 10:40 AM Revision a4854e75 (cdmlib-apps): #5448 typo
- 10:40 AM Revision 75733adf (cdmlib-apps): #5448 Set species epithet for species groups and aggregates
- 10:40 AM Revision 783428fc (cdmlib-apps): #5448 Move import of concept relationships to classification import
- class
- there we already have the accepted taxa for the synonyms - 10:12 AM Revision 8cb2c9bf (cdm-dataportal): upgrading selenium to 2.53.1
- 06:37 AM Revision 3c8d638c (cdmlib): Use title cache as fallback for specimen DTO for portal table
07/15/2016
- 01:36 PM feature request #5981 (In Progress): Add abbreviation to Rank "Cultivar"
- Added abbreviation to csv file: r28685
- 01:32 PM feature request #5981 (Closed): Add abbreviation to Rank "Cultivar"
- For formatting it is helpful to have the abbreviation. Maybe not always necessary if name is handled as CultivarName,...
- 01:33 PM Revision 310f2e0f (cdmlib): #5981 Add abbreviation to Rank "Cultivar"
- 01:18 PM Revision f0572620 (cdmlib): Use EN_DASH in E+M Condensed Distribution
07/14/2016
- 05:04 PM feature request #5778 (Resolved): Update symbols for PresenceAbsenceTerms in existing databases
- First version implemented (untested) r28683
- 03:45 PM feature request #5778: Update symbols for PresenceAbsenceTerms in existing databases
- Differences are:
~~~
c3ee7048-15b7-4be1-b687-9ce9c1a669d6; endemic; e; ?
cef81d25-501c-48d8-bbea-542ec50de2c2; pres... - 05:02 PM Revision 9a9a03a4 (cdmlib): #5778 implement first version for PAT symbols update
- 04:22 PM Revision 7c20414a (cdmlib): #5777 Replace dash type in PAT symbols
- 03:22 PM Revision e797826e (cdmlib): #5777 Fix symbol reading for PresenceAbsenceTerm csv
- 01:18 PM Revision a6adf906 (cdmlib): Add isInfraGenericButNotSpeciesGroup() method to Rank
- 12:02 PM Revision a3b2f701 (taxeditor): Empty concept view if an unsupported view is selected
- 08:59 AM Revision b4aea28a (cdmlib-apps): #5448 Set meaningful reference names
- 08:42 AM Revision 231d88bb (cdmlib-apps): Small additions to import
- - import nomenclatural status extra information to ruleConsidered
- refresh title cache of taxa to correctly display... - 08:40 AM Revision 17e07126 (taxeditor): Fix i18n properties
07/13/2016
- 01:38 PM feature request #5890 (Resolved): Implement auto-suggest for data portal
- 01:35 PM feature request #5890 (Feedback): Implement auto-suggest for data portal
- 12:28 PM Revision 7f861412 (taxeditor): Fix repository location for target platform
- 12:26 PM Revision 88d0b58a (cdmlib): Pass pageSize and pageNumber to list method
07/12/2016
- 01:45 PM feature request #5890 (Closed): Implement auto-suggest for data portal
- Added a new ticket for weighted search results -> #5978
07/11/2016
- 05:30 PM feature request #5833 (Closed): Implement single cache strategy for references
- Seems to be fixed. However, we definetly still need to improve the cache strategy. But this is handled in separate ti...
- 05:07 PM bug #5976 (In Progress): Update sortIndex for potential nullValue sortIndexes
- 05:07 PM bug #5976: Update sortIndex for potential nullValue sortIndexes
- First partial and untested implementation with r28672. PKNode still missing.
- 04:43 PM bug #5976 (Closed): Update sortIndex for potential nullValue sortIndexes
- see #5955
Old data still needs to be updated. We already ran an updater but to be on the save side that really a... - 05:06 PM Revision 58a29064 (cdmlib): #3925 First untested implementation for move excluded to TaxonNode
- 05:04 PM Revision 1e918bbc (cdmlib): #5976 First partial implementation for updateSortIndex
- 02:44 PM bug #5861 (Closed): Taxon appended phrase must not be in italics
- 02:44 PM bug #5861: Taxon appended phrase must not be in italics
- Looks good. I think we can close the ticket.
- 02:33 PM bug #4965 (Resolved): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
- more general solution (for all supported database types) implemented by r28671
- 02:30 PM Revision 32e833cb (cdmlib): #4965 Implement general solution for getDatabase() in
- WrappedCdmDataSource
- 01:58 PM Revision cb53bcb3 (taxeditor): add selection of classification to csvPrintExport
- 12:31 PM Revision 7c452fe9 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 12:31 PM Revision e6c333f3 (cdmlib): small changes in CsvNameExport
- 10:54 AM Revision af1b3519 (cdmlib): It seems as if oclc number are no longer supported by the MobotOpenUrl api, test ignored
- 10:17 AM Revision 5e2ae553 (cdmlib): small change in CdvNameExport
07/08/2016
- 09:07 PM feature request #5974 (Closed): Remove synonym relationships
- Synonym relationships are not necessarily needed as a synonym always belongs to 1 explicit taxon. They are only neede...
- 08:58 PM feature request #3925 (In Progress): Unplaced and excluded to TaxonNode
- 08:56 PM bug #5284 (In Progress): [UML] Replace Scope by DefinedTerm in PolytomousKey UML
- 08:52 PM feature request #5258 (In Progress): Accessed field for WebPages
- 08:46 PM feature request #5523 (In Progress): [DISCUSS] Do we need to distinguish homotypic and heterotypic synonym relationships
- 08:45 PM feature request #5634 (In Progress): Excluded note for excluded taxa /taxon nodes
- 08:42 PM feature request #5778 (In Progress): Update symbols for PresenceAbsenceTerms in existing databases
- 08:37 PM feature request #5921 (Resolved): Change symbol for congruence relationship.
- Fixed by r28665
- 05:37 PM feature request #5921 (In Progress): Change symbol for congruence relationship.
- 08:36 PM Revision 2a562e3e (cdmlib): #5921 Change symbol for congruence relationship.
- 08:02 PM bug #5826: Clean up names with empty name descriptions
- Some SQL statements for testing
~~~
SELECT db.id, dba.DTYPE, dba.feature_id, db.created
FROM DescriptionBase db IN... - 08:00 PM bug #5826 (Resolved): Clean up names with empty name descriptions
- Fixed by r28664
- 05:37 PM bug #5826 (In Progress): Clean up names with empty name descriptions
- 07:59 PM Revision 71757814 (cdmlib): #5826 Clean up names with empty name descriptions
- 06:19 PM feature request #5875 (Resolved): Add isDefault flag to DescriptionBase
- 06:19 PM feature request #5875: Add isDefault flag to DescriptionBase
- Fixed by r28663
- 05:38 PM feature request #5875 (In Progress): Add isDefault flag to DescriptionBase
- 06:18 PM feature request #5973 (Closed): Implement DescriptionBase.isDefault in TaxEditor
- With cdm 4.1 we do have the DescriptionBase.isDefault flag.
In the Editor we should evaluate this flag by
* m... - 06:05 PM Revision 46c571ad (cdmlib): #5875 Add isDefault flag to DescriptionBase
- 05:34 PM feature request #5970 (Resolved): Implement allowOverride in CdmPreference
- 05:22 PM feature request #5970: Implement allowOverride in CdmPreference
- fixed by [28661] and [28659]
- 02:48 PM feature request #5970 (In Progress): Implement allowOverride in CdmPreference
- 02:48 PM feature request #5970 (Closed): Implement allowOverride in CdmPreference
- if false, the preference should not be overridden by local preferences
if true local preferences override databa... - 05:30 PM Revision f974bf29 (cdmlib): #5970 Add allowOverride
- 05:30 PM Revision 7cfc6254 (cdmlib): Add schema updater for v4.0-v4.1
- 05:25 PM Revision b4e979be (cdmlib): #5970 Add allowOverride and refactor CdmPreference
- 04:30 PM feature request #5972 (Closed): Prevent user from unwanted author and reference updates
- From time to time it happens that users press the "edit" button for editing authors or references.
This is usual... - 03:36 PM Revision d28e03d4 (cdm-dataportal): fix merge conflict
- 02:53 PM feature request #5971 (Closed): Implement database wide CdmPreference writing
- Similar to TaxEditor preferences CDM Preferences need to be inserted/updated.
In the new "Admin" main menu we ne... - 02:37 PM feature request #5969 (Closed): Implement CdmPreference reading for database preferences
- Start with NomenclaturalCode. The values are available through IPreferenceService.
See also #3958, #5971
- 02:35 PM Revision 1396c2bc (cdmlib): #3958 Latest update to IPreferenceService classes
- 01:36 PM Revision b13fab25 (cdmlib): Add TaxonBase.secMicroReference to test dtd
- 01:10 PM bug #5967 (Closed): Adapt default update site to production update site.
- Adapt default update site to http://cybertaxonomy.eu/download/taxeditor/update/stable/. Currently it is http://cybert...
- 12:57 PM Revision 6bb0a296 (cdmlib): Unignore MobotOpenUrlServices
- 12:49 PM Revision 581ecfc6 (cdmlib): Cleanup
- 10:21 AM bug #5965 (Worksforme): Check if authentication works correctly after datasource change
- Hallo,
bei Caryophyllales_spp gibt’s folgende Meldung (Rubiaceae_Mex) funktioniert.
Herzlichen Gruß
Walter
... - 09:51 AM Revision 0ac706e3 (taxeditor): fixing p2 repo urls for indigo releases and nebula
- 09:42 AM Revision b0629834 (taxeditor): remove accidentally comitted source information
07/07/2016
- 04:55 PM Revision e7031ddb (taxeditor): Fix some typos in German translation
- 04:22 PM Revision e12efde6 (cdmlib): NameParser: allow letter for issue
- 04:07 PM Revision fd8908c4 (taxeditor): Add missing transient service method
- 02:57 PM Revision 548e618e (cdmlib): Add javadoc
- 02:46 PM Revision 73784421 (cdmlib): Merge branch 'develop' into csvExport
- 02:14 PM Revision f95ea870 (cdm-dataportal): Merge branch 'csvExport' into develop
- 02:09 PM Revision 176e260a (cdm-dataportal): Merge branch 'develop' into csvExport
- # Conflicts:
# modules/cdm_dataportal/cdm_csv_export/cdm_csv_export.module
# modules/cdm_dataportal/cdm_dataportal.mo... - 01:45 PM bug #5964 (New): It is not possible to search for hybrid formulas in taxon search
- I tested this with Festuca × Lolium
see also #5832 (same ticket for TaxEditor)
- 01:39 PM Revision 24f57e45 (cdm-dataportal): #5890 Fix auto-suggest for taxon search
- - use classification uuids instead of root node uuids for taxontree
retrieval - 01:36 PM Revision 3b2b4319 (cdmlib): #5890 pass classification uuid instead of root node uuid
- 01:03 PM Revision 1788e0c6 (cdmlib-apps): Adapt cdmlib-app poms to new version
07/06/2016
- 06:36 PM Revision c4e0c8dd (cdmlib): name
- 06:34 PM Revision f35d3f4a (cdm-dataportal): #5890 Handle taxon name parsing in service method -> only pass taxon
- name
- 05:22 PM Revision ef7506b3 (cdmlib): #5890 Evaluate taxon node based on selected cassification or taxon
- 05:06 PM Revision 15ee8449 (taxeditor): Merge branch 'release/4.2.0' into develop
- 05:06 PM Revision b550797b (taxeditor): Merge branch 'release/4.2.0'
- 04:59 PM Revision 02c19c2f (cdm-server): Merge branch 'release/4.2.0' into develop
- 04:59 PM Revision 7a334694 (cdm-server): updating poms for branch'release/4.2.0' with non-snapshot versions
- 04:58 PM Revision f5421ac8 (cdm-server): setting sourceEncoding to UTF-8
- 04:58 PM Revision 972cd222 (cdm-server): setting sourceEncoding to UTF-8
- 04:54 PM Revision f37484b2 (taxeditor): Revert "fixing cdm version directly in master for release 4.1.1"
- This reverts commit 8a6eac640318fe5a4e4b20a44023d41686263123.
- 04:54 PM Revision 81e75c99 (taxeditor): Revert "fixing cdm version directly in master for release 4.1.1"
- This reverts commit 04baa12cfedc6eaadd8a1b3061ad261f11239c28.
- 04:15 PM Revision 2fa67737 (cdm-webapp): Merge branch 'release/4.2.0' into develop
- 04:14 PM Revision 6f5924a5 (cdm-webapp): updating poms for branch'release/4.2.0' with non-snapshot versions
- 04:14 PM Revision d38edbb7 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.2.0
- 04:13 PM Revision 41fba962 (cdm-vaadin): Merge branch 'release/4.2.0' into develop
- 04:13 PM Revision d6ed3b0b (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 04:11 PM Revision 78dfc550 (cdm-dataportal): Merge branch 'release/4.2.0' into develop
- 04:11 PM Revision 6fe028f7 (cdm-dataportal): updating poms for branch'release/4.2.0' with non-snapshot versions
- 04:11 PM Revision b635e0fe (cdm-dataportal): release-preparation: production level css
- 04:11 PM Revision c61e7f63 (cdm-vaadin): updating poms for branch'release/4.2.0' with non-snapshot versions
- 04:11 PM Revision a674c773 (cdm-vaadin): jenkins bumping cdmlib.version to 4.2.0
- 04:10 PM Revision 4a765dc3 (cdmlib): Updating develop poms back to pre merge state
- 04:10 PM Revision f1375c32 (cdmlib): Merge branch 'master' into develop
- 04:10 PM Revision 31f1c217 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 04:10 PM Revision a626f321 (cdmlib): Merge branch 'release/4.2.0'
- 03:53 PM Revision a1287e86 (cdmlib): updating poms for branch'release/4.2.0' with non-snapshot versions
- 03:43 PM Revision 4c95b274 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.2.0-SNAPSHOT
- 03:43 PM Revision 6769fd63 (cdm-webapp): updating poms for 4.3.0-SNAPSHOT development
- 03:43 PM Revision abf881f3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.3.0-SNAPSHOT
- 03:42 PM Revision 3c928d6e (taxeditor): Updated version in pom / project files to taxeditor version : 4.3.0-SNAPSHOT and cdmlib version : 4.3.0-SNAPSHOT
- 03:42 PM Revision 5b574d18 (taxeditor): Updated version in pom / project files to taxeditor version : 4.2.0 and cdmlib version : 4.2.0
- 03:41 PM Revision 57c85295 (cdm-vaadin): jenkins bumping cdmlib.version to 4.2.0-SNAPSHOT
- 03:41 PM Revision 27d656cb (cdm-vaadin): updating poms for 4.3.0-SNAPSHOT development
- 03:41 PM Revision 05ccc852 (cdm-vaadin): jenkins bumping cdmlib.version to 4.3.0-SNAPSHOT
- 03:41 PM Revision a171c75f (cdm-dataportal): updating poms for 4.3.0-SNAPSHOT development
- 03:41 PM Revision 3a533d9d (cdm-server): updating poms for 4.3.0-SNAPSHOT development
- 03:38 PM Revision 08551b9a (cdmlib): updating poms for 4.3.0-SNAPSHOT development
- 03:26 PM feature request #5833 (Resolved): Implement single cache strategy for references
- 02:57 PM Revision b9e54ec8 (cdmlib): #5960 Use abbrevTitle for reference parsing
- 02:57 PM Revision b4f7840c (cdmlib): #5958 Fix NPE in findTaxaByName with missing clazz param (II)
- 02:41 PM Revision a1b73fc5 (cdmlib): minor
- 02:41 PM Revision 83b68cf9 (cdmlib): fix failing editor test because of updateSortindex in mergeEntityListener
- 02:30 PM Revision e8074ec5 (cdm-dataportal): #5890 Pass classification uuid and taxon uuid to csv export
- 02:11 PM Revision c9992d6a (taxeditor): minor
- 02:11 PM Revision a1127475 (cdmlib): #5958 Fix NPE in findTaxaByName with missing clazz param
- 02:08 PM Revision dfd55109 (taxeditor): smaller changes for specimen import
- 02:08 PM Revision 23cf0e8a (taxeditor): minor
- 02:02 PM Revision bd9c39e8 (cdmlib): Fix compile error in Print Publisher
- 01:50 PM Revision e27bf64b (taxeditor): Fix transient services
- 01:34 PM Revision a9f6d017 (cdmlib-apps): #5958 fix findByName in pesi
- 01:25 PM Revision 87971ac8 (taxeditor): set failing test to ignore see ticket #5959
- 01:23 PM Revision 9aa22b7e (cdmlib-apps): #5958 fix findByName in pesi
- 01:15 PM Revision f2babe22 (cdmlib): cleaning up and hamonizing contoller code
- 12:43 PM Revision 891d65aa (cdmlib): #5958 fix failing tests
- 12:14 PM Revision 3cf47767 (cdmlib): #5958 Implement name part search as web service
- 11:24 AM bug #5191 (Worksforme): TransmissionEngineDistribution stops before it is 100% done
- seems to be fixed by one the latest changes (most probably aadb17f) :
* 9b7db8d TransmissionEngineDistribution: sol... - 09:37 AM Revision 3de12c0d (cdm-dataportal): #5793 using new settings field status_glue to allow flexible configuration of the ditribution hierachy
- 08:32 AM Revision a180fd4f (cdmlib): #5957 Fix empty treeindexes
- 01:35 AM Revision 29a5f57c (cdmlib): #5957 Fix for facultative rank range
- 01:18 AM Revision 0429965c (cdmlib-apps): #5822 / #5892 Mexico rubiaceae import
- 01:16 AM Revision e49e778f (cdmlib-apps): Update eflora and pesi to v4.2.0
- 12:55 AM Revision 63f513d9 (cdmlib): #5957 mplement groupByHigherTaxon webservice
- 12:39 AM Revision 5ccb7fa7 (cdmlib): Cleanup
07/05/2016
- 06:01 PM Revision 4bfe18f9 (cdm-dataportal): #5768 removing whitespace
- 05:57 PM Revision f15267b0 (cdm-dataportal): function doc
- 04:38 PM Revision 834fb28c (cdm-dataportal): #5793 reverting last solution and using new defaults
- 04:12 PM Revision 88e8a1fe (cdm-dataportal): #5845 removing whitespace
- 04:06 PM feature request #5956 (Closed): Improve functionality and UX for (children display in) breadcrumb navigation - 2
- successor of #5852
1) remove transparency (needs to be discussed if needed): moved to #6312
2) mobile devic... - 04:00 PM bug #5861: Taxon appended phrase must not be in italics
- Replying to [[comment3|a.mueller]]:
> Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/d... - 03:59 PM Revision 379798fa (cdm-dataportal): #5861 missing css for appended-phrase
- 03:54 PM Revision d75e1586 (cdm-dataportal): #5904 fixing css for zen theme
- 03:06 PM Revision 13aed6c3 (cdmlib): set failing tests to ignore
- 03:03 PM Revision 08059fd5 (cdmlib): modernizing HttpClient usage in isServiceAvailable() method
- 03:02 PM Revision d2acf582 (taxeditor): minor
- 01:59 PM Revision 04b9479a (cdmlib): fix failing Polytomouskey test
- 01:45 PM feature request #5947: Type information for same field unit should be handled in one line
- "Or even better with abbreviate type status (e.g. HT instead of Holotype). "
Type status should not be abbreviated. ... - 10:02 AM feature request #5947 (New): Type information for same field unit should be handled in one line
- Currently each type designation has one line, but shouldn't if both types have the same field unit.
Example: htt... - 12:52 PM Revision 357386e4 (cdmlib): minor
- 12:52 PM Revision a0ee91b9 (cdmlib): Cleanup
- 12:00 PM Revision b467476c (cdmlib): #5681: move removeNullValueFromCollections to PostMergeEntityListener
- 11:47 AM feature request #5952 (Closed): Second cache field for specimen (identityCache)
- for more information see #5951
- 11:46 AM feature request #5951 (New): Add collector, field number and collection to specimen search label
- Currently the specimen search uses the specimen titleCache as search string. In the titleCache the collector, field n...
- 11:44 AM Revision 7042800d (cdmlib): isServiceAvailable test for MobotOpenUrlServiceWrapperTest
- 11:29 AM feature request #5950 (Duplicate): Add duplicate method for type designations
- Often users want to enter type designation data for a taxon name for multiple types (e.g. holotype and some isotypes)...
- 11:14 AM Revision 5f7cb15c (cdmlib): new method removeNullValues in CdmPreDataChangeListener
- 11:14 AM Revision 541f08b0 (cdmlib): remove updateSortindex and move removeNullValues to the mergeListener
- 10:34 AM Revision d3752fac (cdmlib): TransmissionEngineDistribution: setting lower min heap requirements for tests
- 10:28 AM bug #5948 (Closed): supress protologue icon if according media uri is missing
- http://api.cybertaxonomy.org/rubiaceae_mexico/portal/name/ea5142cd-8c09-4b0b-b57a-8a1e2c869be0/taxonNameDescriptions....
- 10:06 AM Revision 4bcc10d3 (cdmlib): TransmissionEngineDistribution avoiding weired exceptions in tests
- 09:37 AM Revision 9b7db8db (cdmlib): TransmissionEngineDistribution: solving problems with excessive heap consumption
- 09:37 AM Revision 0d0d2537 (cdmlib): DynamicBatch: a JVM resources aware batch manager
- 09:37 AM Revision aadb17f4 (cdmlib): #5191 fixing process monitor updating in TransmissionEngine
- this is most probably not fixing the ticket but helps providing more reliable monitoring
07/04/2016
- 11:34 PM Revision eee5ea0d (taxeditor): #5946 improve determination event label provider for unlabeled units or taxa
- 03:45 PM Revision e519dde1 (taxeditor): #5946 improve determination event label provider for unlabeled units or taxa
- 03:33 PM Revision 8eea1bc4 (taxeditor): #5930: disable text fields if no language is selected.
- 03:21 PM Revision 1d6463ca (taxeditor): #4018: don't allow to finish, if no language is selected, quick fix
- 03:06 PM bug #5945 (Closed): Deduplicate results from termloading by class
- 03:06 PM bug #5945: Deduplicate results from termloading by class
- Work around seems to work in TaxEditor
- 01:52 PM Revision d63fc1f3 (taxeditor): #5946 Implement/fix referencing objets label provider for TaxonNode and DerivationEvent
07/01/2016
- 02:46 PM Revision 82e3ca05 (taxeditor): fix save symbol of defined term
- 02:33 PM Revision 4344fddf (cdmlib): Adapt test dataset loading to standard path
- 02:13 PM Revision ec3ff238 (cdmlib): Fix dataset issue in persistence test and clean up
- 01:30 PM Revision 6c56ee87 (taxeditor): #5908: add a default representation to a term with no representation
- 01:15 PM Revision 969dbe3e (cdmlib): #5678: fix deletion of FeatureNodes and minor changes
- 01:15 PM Revision 794708a7 (cdmlib): advanced MediaDeletionConfigurator
- 01:10 PM Revision a1bd384c (taxeditor): minor
- 01:09 PM Revision 59e6f340 (taxeditor): #5678. fix deletion of feature nodes
- 12:53 PM bug #5945 (Resolved): Deduplicate results from termloading by class
- 12:53 PM bug #5945: Deduplicate results from termloading by class
- Fixed by r28535 / commit:f7a01923
- 12:46 PM bug #5945 (Closed): Deduplicate results from termloading by class
- The general problem is described in #5871
This ticket is a workaround until the general problem has been solved
... - 12:51 PM Revision 4cbd2815 (cdmlib): Clean up
- 12:50 PM Revision f7a01923 (cdmlib): #5945 Deduplicate results from termloading by class
- 11:41 AM task #5943 (Closed): back to search button/link should go into a drupal block
- The `admin/config/cdm_dataportal/settings/layout/taxon` offers the option:
~~~
[x] Show Back to search results ... - 11:21 AM Revision 1bc810db (taxeditor): #4630: fix search of bulkeditor if underlying data have changed
- 11:14 AM feature request #5942 (New): Advanced Search filter to exlude Distributions with status absent
- A filter option should be added to the Advanced Search exclude Distributions with status absent. This should be part ...
- 10:59 AM Revision a237ff3d (cdm-dataportal): missing whitespace in translation
06/30/2016
- 04:59 PM Revision a69df67a (cdm-dataportal): translation po files normalized for poedit
- 04:51 PM Revision 41cc9dd1 (cdmlib): #5941 Fix representation with missing language in Classbridge
- 04:46 PM Revision ab089d7d (cdm-dataportal): fixing Plural-Forms header in po file
- 04:34 PM Revision e8f96965 (taxeditor): Fix compile errors in transient services for loadByIds
- 04:19 PM Revision 579c485d (cdm-dataportal): rename search tab factual data >> content category
- 01:43 PM Revision 888ca58b (taxeditor): if multilanguage text isEmpty translation wizard does not open
- 01:35 PM Revision e3961ec3 (taxeditor): fix NPE in translation wizard
- 01:09 PM feature request #5936: Multilanguage Support for TextData
- Hallo,
mir fällt gerade auf, dass das Problem bei Espanol sein könnte, dass diese Sprache eigentlich nur über den C... - 12:38 PM feature request #5936 (New): Multilanguage Support for TextData
- It seems that TextData has no multi-language support yet in Dataportal.
Hallo,
die Eingabe von 2 Sprachve... - 01:08 PM bug #5938 (Closed): distribution and specimen maps can not be used on the same page
In tab-less taxon pages with distribution and georeferenced specimens the specimen map is broken.
test cases:...- 12:00 PM Revision 1ec74f53 (cdmlib): refactoring listByIds to loadByIds
- 09:44 AM Revision bee783cb (taxeditor): fix transient services
- 09:13 AM Revision e20defe1 (cdmlib): fix getUuidAndTitleCache for pattern with ?
06/29/2016
- 07:05 PM Revision 04f74f8d (cdm-dataportal): more translations
- 06:45 PM Revision 51384c70 (cdm-dataportal): more translations
- 06:29 PM feature request #5935 (New): use double line to separate concept relations from homotypic groups
- _Synonymie ... darunter mit Doppelstrich abgesetzt Konzeptsynonyme, nicht eingerückt. _
Examples:
* ...?
A... - 04:52 PM Revision 87926c7b (cdmlib): #4366 ignoring test for short time
- 04:48 PM Revision a67b8f0c (cdmlib): #5931 Fix taxon cache strategy does not reflect protected flag in sec
- reference
- 04:05 PM feature request #5177 (Closed): improve perfomance of TransmissionEngineDistribution
- local branch TransmissionEngine-speedup rebased on develop
- 04:01 PM feature request #4366 (Resolved): Transmissionengine Distribution: implement rules for source references
- implemented:
* f5295f3 [r28519 Transmissionengine aggregation of source references|* 92a6aa3 r28518] aggregation of... - 03:57 PM Revision f5295f3f (cdmlib): #4366 Transmissionengine aggregation of source references
- 03:57 PM Revision 92a6aa38 (cdmlib): #4366 aggregation of distribution sources implemented for by area aggregation
- 03:57 PM Revision f6299e47 (cdmlib): #4366 test for aggregation of distribution sources (byArea)
- 03:57 PM Revision 1b70bad3 (cdmlib): TransmissionEngine: modification to status compare function for case a==b
- 03:57 PM Revision 848f7204 (cdmlib): #5177 fixing tests which where broken after rebasing the TransmissionEngine-speedup on develop
- - lower rank limit of for the aggregation was too high
- 03:57 PM Revision 09023b8d (cdmlib): fixing bugs related to the rank intervall in the TransmissionEngineDistribution
- 03:57 PM Revision 869c3f85 (cdmlib): solving multiple problems in TransmissionEngine
- - avoiding LIE by fetching the parentAreas for each batch
- skipping taxa not in specified rank interval - 03:57 PM Revision 51f7c673 (cdmlib): performance improvement
- - avoiding cast
- avoiding sorting the list of taxa - 03:57 PM Revision 7659b935 (cdmlib): performance logging
- 03:57 PM Revision 2b92f449 (cdmlib): adding classificationLookup method to serice
- 03:57 PM Revision f4d35a72 (cdmlib): attempt to reduce the overhead imposed by database access
- 03:57 PM Revision 948c50f4 (cdmlib): typo
- 03:09 PM Revision 3056cfa7 (cdmlib): #5838 Fix taxon cache strategy for taxa with missing name
- 02:22 PM Revision 692dd91f (cdmlib): fix getUuidAndTitleCache for pattern with * or ?
- 01:55 PM Revision 1760dc20 (cdmlib-apps): #5791 Adapt type of E+M vocabulary.
- 01:14 PM Revision 3fa460e5 (taxeditor): #4018 let the right side of the translation wizard empty, fix the save problem for adding a neww representation for terms
- 01:14 PM Revision 43e73e89 (cdmlib): Add Feature.Notes to Markup-Transformer
- 11:39 AM Revision 0ab85ea9 (taxeditor): #4018: fix title of defined term details if global language is not the cdm default language
- 11:00 AM Revision 0238c919 (taxeditor): fix doubled title in DefinedTerm Details and fix filling of menu items for multilanguage support
- 09:43 AM Revision f1c17375 (taxeditor): #4018 fix NPE in DefaultTermComparator
- 09:40 AM bug #5926: Update labels in TermEditor for Vocabularies
- This is even the case after closing and opening the term editor.
- 09:37 AM bug #5926 (Closed): Update labels in TermEditor for Vocabularies
- If the label of a vocabulary is changed in term editor details view it is not updated in the term editor window.
... - 09:26 AM Revision 6a41d4dc (taxeditor): #4018 fix NPE
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