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From 06/16/2016 to 07/15/2016

07/15/2016

01:36 PM feature request #5981 (In Progress): Add abbreviation to Rank "Cultivar"
Added abbreviation to csv file: r28685
Andreas Müller
01:32 PM feature request #5981 (Closed): Add abbreviation to Rank "Cultivar"
For formatting it is helpful to have the abbreviation. Maybe not always necessary if name is handled as CultivarName,... Andreas Müller

07/14/2016

05:04 PM feature request #5778 (Resolved): Update symbols for PresenceAbsenceTerms in existing databases
First version implemented (untested) r28683
Andreas Müller
03:45 PM feature request #5778: Update symbols for PresenceAbsenceTerms in existing databases
Differences are:
~~~
c3ee7048-15b7-4be1-b687-9ce9c1a669d6; endemic; e; ?
cef81d25-501c-48d8-bbea-542ec50de2c2; pres...
Andreas Müller

07/13/2016

01:38 PM feature request #5890 (Resolved): Implement auto-suggest for data portal
Andreas Müller
01:35 PM feature request #5890 (Feedback): Implement auto-suggest for data portal
Andreas Müller

07/12/2016

01:45 PM feature request #5890 (Closed): Implement auto-suggest for data portal
Added a new ticket for weighted search results -> #5978
Patrick Plitzner

07/11/2016

05:30 PM feature request #5833 (Closed): Implement single cache strategy for references
Seems to be fixed. However, we definetly still need to improve the cache strategy. But this is handled in separate ti... Andreas Müller
05:07 PM bug #5976 (In Progress): Update sortIndex for potential nullValue sortIndexes
Andreas Müller
05:07 PM bug #5976: Update sortIndex for potential nullValue sortIndexes
First partial and untested implementation with r28672. PKNode still missing.
Andreas Müller
04:43 PM bug #5976 (Closed): Update sortIndex for potential nullValue sortIndexes
see #5955
Old data still needs to be updated. We already ran an updater but to be on the save side that really a...
Andreas Müller
02:44 PM bug #5861 (Closed): Taxon appended phrase must not be in italics
Andreas Müller
02:44 PM bug #5861: Taxon appended phrase must not be in italics
Looks good. I think we can close the ticket.
Andreas Müller
02:33 PM bug #4965 (Resolved): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
more general solution (for all supported database types) implemented by r28671
Andreas Müller

07/08/2016

09:07 PM feature request #5974 (Closed): Remove synonym relationships
Synonym relationships are not necessarily needed as a synonym always belongs to 1 explicit taxon. They are only neede... Andreas Müller
08:58 PM feature request #3925 (In Progress): Unplaced and excluded to TaxonNode
Andreas Müller
08:56 PM bug #5284 (In Progress): [UML] Replace Scope by DefinedTerm in PolytomousKey UML
Andreas Müller
08:52 PM feature request #5258 (In Progress): Accessed field for WebPages
Andreas Müller
08:46 PM feature request #5523 (In Progress): [DISCUSS] Do we need to distinguish homotypic and heterotypic synonym relationships
Andreas Müller
08:45 PM feature request #5634 (In Progress): Excluded note for excluded taxa /taxon nodes
Andreas Müller
08:42 PM feature request #5778 (In Progress): Update symbols for PresenceAbsenceTerms in existing databases
Andreas Müller
08:37 PM feature request #5921 (Resolved): Change symbol for congruence relationship.
Fixed by r28665
Andreas Müller
05:37 PM feature request #5921 (In Progress): Change symbol for congruence relationship.
Andreas Müller
08:02 PM bug #5826: Clean up names with empty name descriptions
Some SQL statements for testing
~~~
SELECT db.id, dba.DTYPE, dba.feature_id, db.created
FROM DescriptionBase db IN...
Andreas Müller
08:00 PM bug #5826 (Resolved): Clean up names with empty name descriptions
Fixed by r28664
Andreas Müller
05:37 PM bug #5826 (In Progress): Clean up names with empty name descriptions
Andreas Müller
06:19 PM feature request #5875 (Resolved): Add isDefault flag to DescriptionBase
Andreas Müller
06:19 PM feature request #5875: Add isDefault flag to DescriptionBase
Fixed by r28663
Andreas Müller
05:38 PM feature request #5875 (In Progress): Add isDefault flag to DescriptionBase
Andreas Müller
06:18 PM feature request #5973 (Closed): Implement DescriptionBase.isDefault in TaxEditor
With cdm 4.1 we do have the DescriptionBase.isDefault flag.
In the Editor we should evaluate this flag by
* m...
Andreas Müller
05:34 PM feature request #5970 (Resolved): Implement allowOverride in CdmPreference
Andreas Müller
05:22 PM feature request #5970: Implement allowOverride in CdmPreference
fixed by [28661] and [28659]
Andreas Müller
02:48 PM feature request #5970 (In Progress): Implement allowOverride in CdmPreference
Andreas Müller
02:48 PM feature request #5970 (Closed): Implement allowOverride in CdmPreference
if false, the preference should not be overridden by local preferences
if true local preferences override databa...
Andreas Müller
04:30 PM feature request #5972 (Closed): Prevent user from unwanted author and reference updates
From time to time it happens that users press the "edit" button for editing authors or references.
This is usual...
Andreas Müller
02:53 PM feature request #5971 (Closed): Implement database wide CdmPreference writing
Similar to TaxEditor preferences CDM Preferences need to be inserted/updated.
In the new "Admin" main menu we ne...
Andreas Müller
02:37 PM feature request #5969 (Closed): Implement CdmPreference reading for database preferences
Start with NomenclaturalCode. The values are available through IPreferenceService.
See also #3958, #5971
Andreas Müller
01:10 PM bug #5967 (Closed): Adapt default update site to production update site.
Adapt default update site to http://cybertaxonomy.eu/download/taxeditor/update/stable/. Currently it is http://cybert... Andreas Müller
10:21 AM bug #5965 (Worksforme): Check if authentication works correctly after datasource change
Hallo,
bei Caryophyllales_spp gibt’s folgende Meldung (Rubiaceae_Mex) funktioniert.
Herzlichen Gruß
Walter
...
Andreas Müller

07/07/2016

01:45 PM bug #5964 (New): It is not possible to search for hybrid formulas in taxon search
I tested this with Festuca × Lolium
see also #5832 (same ticket for TaxEditor)
Patrick Plitzner

07/06/2016

03:26 PM feature request #5833 (Resolved): Implement single cache strategy for references
Andreas Müller
11:24 AM bug #5191 (Worksforme): TransmissionEngineDistribution stops before it is 100% done
seems to be fixed by one the latest changes (most probably aadb17f) :
* 9b7db8d TransmissionEngineDistribution: sol...
Andreas Kohlbecker

07/05/2016

04:06 PM feature request #5956 (Closed): Improve functionality and UX for (children display in) breadcrumb navigation - 2
successor of #5852
1) remove transparency (needs to be discussed if needed): moved to #6312
2) mobile devic...
Andreas Kohlbecker
04:00 PM bug #5861: Taxon appended phrase must not be in italics
Replying to [[comment3|a.mueller]]:
> Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/d...
Andreas Kohlbecker
01:45 PM feature request #5947: Type information for same field unit should be handled in one line
"Or even better with abbreviate type status (e.g. HT instead of Holotype). "
Type status should not be abbreviated. ...
Wolf-Henning Kusber
10:02 AM feature request #5947 (New): Type information for same field unit should be handled in one line
Currently each type designation has one line, but shouldn't if both types have the same field unit.
Example: htt...
Andreas Müller
11:47 AM feature request #5952 (Closed): Second cache field for specimen (identityCache)
for more information see #5951
Andreas Müller
11:46 AM feature request #5951 (New): Add collector, field number and collection to specimen search label
Currently the specimen search uses the specimen titleCache as search string. In the titleCache the collector, field n... Andreas Müller
11:29 AM feature request #5950 (Duplicate): Add duplicate method for type designations
Often users want to enter type designation data for a taxon name for multiple types (e.g. holotype and some isotypes)... Andreas Müller
10:28 AM bug #5948 (Closed): supress protologue icon if according media uri is missing
http://api.cybertaxonomy.org/rubiaceae_mexico/portal/name/ea5142cd-8c09-4b0b-b57a-8a1e2c869be0/taxonNameDescriptions.... Andreas Kohlbecker

07/04/2016

03:06 PM bug #5945 (Closed): Deduplicate results from termloading by class
Andreas Müller
03:06 PM bug #5945: Deduplicate results from termloading by class
Work around seems to work in TaxEditor
Andreas Müller

07/01/2016

12:53 PM bug #5945 (Resolved): Deduplicate results from termloading by class
Andreas Müller
12:53 PM bug #5945: Deduplicate results from termloading by class
Fixed by r28535 / commit:f7a01923
Andreas Müller
12:46 PM bug #5945 (Closed): Deduplicate results from termloading by class
The general problem is described in #5871
This ticket is a workaround until the general problem has been solved
...
Andreas Müller
11:41 AM task #5943 (Closed): back to search button/link should go into a drupal block
The `admin/config/cdm_dataportal/settings/layout/taxon` offers the option:
~~~
[x] Show Back to search results ...
Andreas Kohlbecker
11:14 AM feature request #5942 (New): Advanced Search filter to exlude Distributions with status absent
A filter option should be added to the Advanced Search exclude Distributions with status absent. This should be part ... Andreas Kohlbecker

06/30/2016

01:09 PM feature request #5936: Multilanguage Support for TextData
Hallo,
mir fällt gerade auf, dass das Problem bei Espanol sein könnte, dass diese Sprache eigentlich nur über den C...
Andreas Müller
12:38 PM feature request #5936 (New): Multilanguage Support for TextData
It seems that TextData has no multi-language support yet in Dataportal.
Hallo,
die Eingabe von 2 Sprachve...
Andreas Müller
01:08 PM bug #5938 (Closed): distribution and specimen maps can not be used on the same page

In tab-less taxon pages with distribution and georeferenced specimens the specimen map is broken.
test cases:...
Andreas Kohlbecker

06/29/2016

06:29 PM feature request #5935 (New): use double line to separate concept relations from homotypic groups
_Synonymie ... darunter mit Doppelstrich abgesetzt Konzeptsynonyme, nicht eingerückt. _
Examples:
* ...?
A...
Andreas Kohlbecker
04:05 PM feature request #5177 (Closed): improve perfomance of TransmissionEngineDistribution
local branch TransmissionEngine-speedup rebased on develop
Andreas Kohlbecker
04:01 PM feature request #4366 (Resolved): Transmissionengine Distribution: implement rules for source references
implemented:
* f5295f3 [r28519 Transmissionengine aggregation of source references|* 92a6aa3 r28518] aggregation of...
Andreas Kohlbecker
09:40 AM bug #5926: Update labels in TermEditor for Vocabularies
This is even the case after closing and opening the term editor.
Andreas Müller
09:37 AM bug #5926 (Closed): Update labels in TermEditor for Vocabularies
If the label of a vocabulary is changed in term editor details view it is not updated in the term editor window.
...
Andreas Müller

06/28/2016

05:55 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
Replying to [[comment1|a.kohlbecker]]:
> Hallo Andreas,
>
> dem letzten Satz kann ich zustimmen: " es wäre in di...
Andreas Kohlbecker
04:19 PM bug #5861: Taxon appended phrase must not be in italics
Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/dataportal/preview/flora-cuba/cdm_datapo... Andreas Müller
10:52 AM feature request #5736: Show sec reference for TaxonInteractions
Works fine. Only remaining issue if possible: also add links like DOIs and URIs if available.
Example: http://test...
Andreas Müller

06/27/2016

05:26 PM bug #4821: Changing order of terms not possible
The term still disappears if I try to move it. Reappears at old possition after reconnect.
What I did:
* created ...
Andreas Müller
05:04 PM bug #5924 (Closed): Change password leads to bad credentials
Changing the password currently does not login with new password and leads to a bad credentials exception.
There...
Andreas Müller
02:24 PM feature request #5922 (Closed): Change order in supplemental data view
Rights and Credits are almost never used. Therefore we should move them to the end of the list. Otherwise one often n... Andreas Müller
01:49 PM feature request #5921: Change symbol for congruence relationship.
Hallo,
> Und das Zeichen beim Konzeptsynonym irritiert mich – sichere Kongruenz sollte doch das Gleichheitszeichen ...
Andreas Müller
01:15 PM feature request #5921 (Closed): Change symbol for congruence relationship.
Und das Zeichen beim Konzeptsynonym irritiert mich – sichere Kongruenz sollte doch das Gleichheitszeichen mit einem D... Andreas Müller
01:00 PM bug #5710: Changing the database connection must reset all caches
In Mexico Rubiaceae I observered that I added NamedAreaLevel und Type to existing areas but they resulted in wrong ID... Andreas Müller

06/24/2016

12:17 PM feature request #5911 (Closed): deploy spanisch translation with the cdm_dataportal module
done by e5bbcdb r28474 adding spanish translation for the cdm_dataportal and sub-modules
Andreas Kohlbecker
12:17 PM bug #5912 (Closed): translatable dynamic strings conform to drupal policy
done by commit:cdm-dataportal|7cc085d (svn:r28476) fixing wrong usages of dynamic strings, using placeholders and avo... Andreas Kohlbecker

06/23/2016

02:14 PM feature request #5914 (New): provide drupal installation profile for multilingual sites
requires steps:
**1. install the required modules**
**IMPORTANT*: The translations supplied with the cdm_d...
Andreas Kohlbecker
01:53 PM feature request #3385: install enable and configure WYSIWYG editors be default
Using the ctools exportable feature seems to be rather complicated.
Directly operatinng on the database in contrast ...
Andreas Kohlbecker
11:55 AM feature request #5913 (New): enable required i18n modules by default
modules to download:
~~~
languageicons
i18n
l10n_update
imce
imce_wysiwyg
wysiwyg
admin_menu
~~~
...
Andreas Kohlbecker
11:48 AM bug #5912 (Closed): translatable dynamic strings conform to drupal policy
in many places of the code translatable dynamic strings are formed the wrong way. This becomes obvious when extractin... Andreas Kohlbecker
11:23 AM feature request #5911: deploy spanisch translation with the cdm_dataportal module
The inclusion of translations into the POT file seems to fail due to a couple of errors like these:
(only some exam...
Andreas Kohlbecker
11:18 AM feature request #5911 (In Progress): deploy spanisch translation with the cdm_dataportal module
Andreas Kohlbecker
10:22 AM feature request #5911 (Closed): deploy spanisch translation with the cdm_dataportal module
For the flora of cuba a spanisch translation of the site has been created #5665
This translation should be expor...
Andreas Kohlbecker

06/22/2016

03:16 PM bug #5907 (New): Advanced Search for taxa: search results seem to be unordered
example:
http://test.e-taxonomy.eu/dataportal/preview/cyprus/?ws=portal%2Ftaxon%2Fsearch&query=&form_build_id=fo...
Andreas Kohlbecker
02:13 PM feature request #5736 (Resolved): Show sec reference for TaxonInteractions
fixed by : bddc8c75 r28452 setting the renderPath for all feature blocks
Andreas Kohlbecker
12:54 PM feature request #5903: serve fontawesome icons directly from the portal (prevents users from being tracked by google)
bug fix for this 793dae0
Andreas Kohlbecker
09:41 AM feature request #5903 (Closed): serve fontawesome icons directly from the portal (prevents users from being tracked by google)
done 74f9f87 r28446
Andreas Kohlbecker
09:40 AM feature request #5903 (Closed): serve fontawesome icons directly from the portal (prevents users from being tracked by google)
the fontawesome icons are currently served from the google CDN, this allows google to track users.
The fontawes...
Andreas Kohlbecker
10:22 AM bug #5905 (New): remove empty homotypic-synonymy-group and clean up the synonymy page spacing and separator borders
Taxon synonymy contains a homotypic-synonymy-group div even if this is empty.
This causes an extra separator line ...
Andreas Kohlbecker
09:58 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
first of all the question of how to model the citation into the db must be solved
Andreas Kohlbecker

06/21/2016

05:46 PM feature request #5890 (In Progress): Implement auto-suggest for data portal
Added taxon auto_suggest to portal setting with r28442
Patrick Plitzner
04:38 PM feature request #5890: Implement auto-suggest for data portal
Ah ok, now it works.
The suggestions are however too unspecific.
For example after typing "Lac" in the cichorieae ...
Andreas Kohlbecker
01:19 PM feature request #5890: Implement auto-suggest for data portal
For some portals (especially Cuba Checklist) it might be required to switch of this features as there are very strict... Andreas Müller
09:20 AM feature request #5890: Implement auto-suggest for data portal
This is not working for. Even after clearing the drupal cache the autosuggest is not working.
Using the `taxon/sear...
Andreas Kohlbecker
05:26 PM feature request #5807: Implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
This is actually not a bug, the search is implemented that way.
However, from the users perspective it seems more in...
Andreas Kohlbecker
11:39 AM feature request #4294: order of map legend entries conforms to term order
Priority increase to have a look to the ticket if time is left until version 1.0 of the portal
Create new ticket fo...
Andreas Müller
10:51 AM bug #3788: sort order of search results broken in free-text taxon search
Please test if still an open issue
Andreas Müller
10:50 AM task #4978: Further performance improvement of portal/taxon/{uuid}/media
For E+M we could choose a solution where we completely disable all media related functions in the portal and thus sup... Andreas Kohlbecker

06/20/2016

03:29 PM feature request #5890 (Resolved): Implement auto-suggest for data portal
Implemented auto suggest based on TaxonListController.doSearch() with r28412
Patrick Plitzner

06/17/2016

05:11 PM task #5083: Alternative image viewer for dataportal
Replying to [[comment2|a.kohlbecker]]:
> To all
>
> please test both viewers with mobile devices. Are both suitab...
Andreas Kohlbecker

06/16/2016

04:58 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
this is an important contribution to the version:"PESI ready for EU-BON"
Andreas Kohlbecker
04:38 PM feature request #5882: option (as new default) to show full citation of accepted name below taxon page title
Replying to [[comment2|a.mueller]]:
> What about those portals not using tabs. Do they also need to have the fully r...
Andreas Kohlbecker
 

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