Activity
From 06/15/2016 to 07/14/2016
07/14/2016
- 05:04 PM feature request #5778 (Resolved): Update symbols for PresenceAbsenceTerms in existing databases
- First version implemented (untested) r28683
- 03:45 PM feature request #5778: Update symbols for PresenceAbsenceTerms in existing databases
- Differences are:
~~~
c3ee7048-15b7-4be1-b687-9ce9c1a669d6; endemic; e; ?
cef81d25-501c-48d8-bbea-542ec50de2c2; pres... - 05:02 PM Revision 9a9a03a4 (cdmlib): #5778 implement first version for PAT symbols update
- 04:22 PM Revision 7c20414a (cdmlib): #5777 Replace dash type in PAT symbols
- 03:22 PM Revision e797826e (cdmlib): #5777 Fix symbol reading for PresenceAbsenceTerm csv
- 01:18 PM Revision a6adf906 (cdmlib): Add isInfraGenericButNotSpeciesGroup() method to Rank
- 12:02 PM Revision a3b2f701 (taxeditor): Empty concept view if an unsupported view is selected
- 08:59 AM Revision b4aea28a (cdmlib-apps): #5448 Set meaningful reference names
- 08:42 AM Revision 231d88bb (cdmlib-apps): Small additions to import
- - import nomenclatural status extra information to ruleConsidered
- refresh title cache of taxa to correctly display... - 08:40 AM Revision 17e07126 (taxeditor): Fix i18n properties
07/13/2016
- 01:38 PM feature request #5890 (Resolved): Implement auto-suggest for data portal
- 01:35 PM feature request #5890 (Feedback): Implement auto-suggest for data portal
- 12:28 PM Revision 7f861412 (taxeditor): Fix repository location for target platform
- 12:26 PM Revision 88d0b58a (cdmlib): Pass pageSize and pageNumber to list method
07/12/2016
- 01:45 PM feature request #5890 (Closed): Implement auto-suggest for data portal
- Added a new ticket for weighted search results -> #5978
07/11/2016
- 05:30 PM feature request #5833 (Closed): Implement single cache strategy for references
- Seems to be fixed. However, we definetly still need to improve the cache strategy. But this is handled in separate ti...
- 05:07 PM bug #5976 (In Progress): Update sortIndex for potential nullValue sortIndexes
- 05:07 PM bug #5976: Update sortIndex for potential nullValue sortIndexes
- First partial and untested implementation with r28672. PKNode still missing.
- 04:43 PM bug #5976 (Closed): Update sortIndex for potential nullValue sortIndexes
- see #5955
Old data still needs to be updated. We already ran an updater but to be on the save side that really a... - 05:06 PM Revision 58a29064 (cdmlib): #3925 First untested implementation for move excluded to TaxonNode
- 05:04 PM Revision 1e918bbc (cdmlib): #5976 First partial implementation for updateSortIndex
- 02:44 PM bug #5861 (Closed): Taxon appended phrase must not be in italics
- 02:44 PM bug #5861: Taxon appended phrase must not be in italics
- Looks good. I think we can close the ticket.
- 02:33 PM bug #4965 (Resolved): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
- more general solution (for all supported database types) implemented by r28671
- 02:30 PM Revision 32e833cb (cdmlib): #4965 Implement general solution for getDatabase() in
- WrappedCdmDataSource
- 01:58 PM Revision cb53bcb3 (taxeditor): add selection of classification to csvPrintExport
- 12:31 PM Revision 7c452fe9 (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 12:31 PM Revision e6c333f3 (cdmlib): small changes in CsvNameExport
- 10:54 AM Revision af1b3519 (cdmlib): It seems as if oclc number are no longer supported by the MobotOpenUrl api, test ignored
- 10:17 AM Revision 5e2ae553 (cdmlib): small change in CdvNameExport
07/08/2016
- 09:07 PM feature request #5974 (Closed): Remove synonym relationships
- Synonym relationships are not necessarily needed as a synonym always belongs to 1 explicit taxon. They are only neede...
- 08:58 PM feature request #3925 (In Progress): Unplaced and excluded to TaxonNode
- 08:56 PM bug #5284 (In Progress): [UML] Replace Scope by DefinedTerm in PolytomousKey UML
- 08:52 PM feature request #5258 (In Progress): Accessed field for WebPages
- 08:46 PM feature request #5523 (In Progress): [DISCUSS] Do we need to distinguish homotypic and heterotypic synonym relationships
- 08:45 PM feature request #5634 (In Progress): Excluded note for excluded taxa /taxon nodes
- 08:42 PM feature request #5778 (In Progress): Update symbols for PresenceAbsenceTerms in existing databases
- 08:37 PM feature request #5921 (Resolved): Change symbol for congruence relationship.
- Fixed by r28665
- 05:37 PM feature request #5921 (In Progress): Change symbol for congruence relationship.
- 08:36 PM Revision 2a562e3e (cdmlib): #5921 Change symbol for congruence relationship.
- 08:02 PM bug #5826: Clean up names with empty name descriptions
- Some SQL statements for testing
~~~
SELECT db.id, dba.DTYPE, dba.feature_id, db.created
FROM DescriptionBase db IN... - 08:00 PM bug #5826 (Resolved): Clean up names with empty name descriptions
- Fixed by r28664
- 05:37 PM bug #5826 (In Progress): Clean up names with empty name descriptions
- 07:59 PM Revision 71757814 (cdmlib): #5826 Clean up names with empty name descriptions
- 06:19 PM feature request #5875 (Resolved): Add isDefault flag to DescriptionBase
- 06:19 PM feature request #5875: Add isDefault flag to DescriptionBase
- Fixed by r28663
- 05:38 PM feature request #5875 (In Progress): Add isDefault flag to DescriptionBase
- 06:18 PM feature request #5973 (Closed): Implement DescriptionBase.isDefault in TaxEditor
- With cdm 4.1 we do have the DescriptionBase.isDefault flag.
In the Editor we should evaluate this flag by
* m... - 06:05 PM Revision 46c571ad (cdmlib): #5875 Add isDefault flag to DescriptionBase
- 05:34 PM feature request #5970 (Resolved): Implement allowOverride in CdmPreference
- 05:22 PM feature request #5970: Implement allowOverride in CdmPreference
- fixed by [28661] and [28659]
- 02:48 PM feature request #5970 (In Progress): Implement allowOverride in CdmPreference
- 02:48 PM feature request #5970 (Closed): Implement allowOverride in CdmPreference
- if false, the preference should not be overridden by local preferences
if true local preferences override databa... - 05:30 PM Revision f974bf29 (cdmlib): #5970 Add allowOverride
- 05:30 PM Revision 7cfc6254 (cdmlib): Add schema updater for v4.0-v4.1
- 05:25 PM Revision b4e979be (cdmlib): #5970 Add allowOverride and refactor CdmPreference
- 04:30 PM feature request #5972 (Closed): Prevent user from unwanted author and reference updates
- From time to time it happens that users press the "edit" button for editing authors or references.
This is usual... - 03:36 PM Revision d28e03d4 (cdm-dataportal): fix merge conflict
- 02:53 PM feature request #5971 (Closed): Implement database wide CdmPreference writing
- Similar to TaxEditor preferences CDM Preferences need to be inserted/updated.
In the new "Admin" main menu we ne... - 02:37 PM feature request #5969 (Closed): Implement CdmPreference reading for database preferences
- Start with NomenclaturalCode. The values are available through IPreferenceService.
See also #3958, #5971
- 02:35 PM Revision 1396c2bc (cdmlib): #3958 Latest update to IPreferenceService classes
- 01:36 PM Revision b13fab25 (cdmlib): Add TaxonBase.secMicroReference to test dtd
- 01:10 PM bug #5967 (Closed): Adapt default update site to production update site.
- Adapt default update site to http://cybertaxonomy.eu/download/taxeditor/update/stable/. Currently it is http://cybert...
- 12:57 PM Revision 6bb0a296 (cdmlib): Unignore MobotOpenUrlServices
- 12:49 PM Revision 581ecfc6 (cdmlib): Cleanup
- 10:21 AM bug #5965 (Worksforme): Check if authentication works correctly after datasource change
- Hallo,
bei Caryophyllales_spp gibt’s folgende Meldung (Rubiaceae_Mex) funktioniert.
Herzlichen Gruß
Walter
... - 09:51 AM Revision 0ac706e3 (taxeditor): fixing p2 repo urls for indigo releases and nebula
- 09:42 AM Revision b0629834 (taxeditor): remove accidentally comitted source information
07/07/2016
- 04:55 PM Revision e7031ddb (taxeditor): Fix some typos in German translation
- 04:22 PM Revision e12efde6 (cdmlib): NameParser: allow letter for issue
- 04:07 PM Revision fd8908c4 (taxeditor): Add missing transient service method
- 02:57 PM Revision 548e618e (cdmlib): Add javadoc
- 02:46 PM Revision 73784421 (cdmlib): Merge branch 'develop' into csvExport
- 02:14 PM Revision f95ea870 (cdm-dataportal): Merge branch 'csvExport' into develop
- 02:09 PM Revision 176e260a (cdm-dataportal): Merge branch 'develop' into csvExport
- # Conflicts:
# modules/cdm_dataportal/cdm_csv_export/cdm_csv_export.module
# modules/cdm_dataportal/cdm_dataportal.mo... - 01:45 PM bug #5964 (New): It is not possible to search for hybrid formulas in taxon search
- I tested this with Festuca × Lolium
see also #5832 (same ticket for TaxEditor)
- 01:39 PM Revision 24f57e45 (cdm-dataportal): #5890 Fix auto-suggest for taxon search
- - use classification uuids instead of root node uuids for taxontree
retrieval - 01:36 PM Revision 3b2b4319 (cdmlib): #5890 pass classification uuid instead of root node uuid
- 01:03 PM Revision 1788e0c6 (cdmlib-apps): Adapt cdmlib-app poms to new version
07/06/2016
- 06:36 PM Revision c4e0c8dd (cdmlib): name
- 06:34 PM Revision f35d3f4a (cdm-dataportal): #5890 Handle taxon name parsing in service method -> only pass taxon
- name
- 05:22 PM Revision ef7506b3 (cdmlib): #5890 Evaluate taxon node based on selected cassification or taxon
- 05:06 PM Revision 15ee8449 (taxeditor): Merge branch 'release/4.2.0' into develop
- 05:06 PM Revision b550797b (taxeditor): Merge branch 'release/4.2.0'
- 04:59 PM Revision 02c19c2f (cdm-server): Merge branch 'release/4.2.0' into develop
- 04:59 PM Revision 7a334694 (cdm-server): updating poms for branch'release/4.2.0' with non-snapshot versions
- 04:58 PM Revision f5421ac8 (cdm-server): setting sourceEncoding to UTF-8
- 04:58 PM Revision 972cd222 (cdm-server): setting sourceEncoding to UTF-8
- 04:54 PM Revision f37484b2 (taxeditor): Revert "fixing cdm version directly in master for release 4.1.1"
- This reverts commit 8a6eac640318fe5a4e4b20a44023d41686263123.
- 04:54 PM Revision 81e75c99 (taxeditor): Revert "fixing cdm version directly in master for release 4.1.1"
- This reverts commit 04baa12cfedc6eaadd8a1b3061ad261f11239c28.
- 04:15 PM Revision 2fa67737 (cdm-webapp): Merge branch 'release/4.2.0' into develop
- 04:14 PM Revision 6f5924a5 (cdm-webapp): updating poms for branch'release/4.2.0' with non-snapshot versions
- 04:14 PM Revision d38edbb7 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.2.0
- 04:13 PM Revision 41fba962 (cdm-vaadin): Merge branch 'release/4.2.0' into develop
- 04:13 PM Revision d6ed3b0b (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 04:11 PM Revision 78dfc550 (cdm-dataportal): Merge branch 'release/4.2.0' into develop
- 04:11 PM Revision 6fe028f7 (cdm-dataportal): updating poms for branch'release/4.2.0' with non-snapshot versions
- 04:11 PM Revision b635e0fe (cdm-dataportal): release-preparation: production level css
- 04:11 PM Revision c61e7f63 (cdm-vaadin): updating poms for branch'release/4.2.0' with non-snapshot versions
- 04:11 PM Revision a674c773 (cdm-vaadin): jenkins bumping cdmlib.version to 4.2.0
- 04:10 PM Revision 4a765dc3 (cdmlib): Updating develop poms back to pre merge state
- 04:10 PM Revision f1375c32 (cdmlib): Merge branch 'master' into develop
- 04:10 PM Revision 31f1c217 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 04:10 PM Revision a626f321 (cdmlib): Merge branch 'release/4.2.0'
- 03:53 PM Revision a1287e86 (cdmlib): updating poms for branch'release/4.2.0' with non-snapshot versions
- 03:43 PM Revision 4c95b274 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.2.0-SNAPSHOT
- 03:43 PM Revision 6769fd63 (cdm-webapp): updating poms for 4.3.0-SNAPSHOT development
- 03:43 PM Revision abf881f3 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 4.3.0-SNAPSHOT
- 03:42 PM Revision 3c928d6e (taxeditor): Updated version in pom / project files to taxeditor version : 4.3.0-SNAPSHOT and cdmlib version : 4.3.0-SNAPSHOT
- 03:42 PM Revision 5b574d18 (taxeditor): Updated version in pom / project files to taxeditor version : 4.2.0 and cdmlib version : 4.2.0
- 03:41 PM Revision 57c85295 (cdm-vaadin): jenkins bumping cdmlib.version to 4.2.0-SNAPSHOT
- 03:41 PM Revision 27d656cb (cdm-vaadin): updating poms for 4.3.0-SNAPSHOT development
- 03:41 PM Revision 05ccc852 (cdm-vaadin): jenkins bumping cdmlib.version to 4.3.0-SNAPSHOT
- 03:41 PM Revision a171c75f (cdm-dataportal): updating poms for 4.3.0-SNAPSHOT development
- 03:41 PM Revision 3a533d9d (cdm-server): updating poms for 4.3.0-SNAPSHOT development
- 03:38 PM Revision 08551b9a (cdmlib): updating poms for 4.3.0-SNAPSHOT development
- 03:26 PM feature request #5833 (Resolved): Implement single cache strategy for references
- 02:57 PM Revision b9e54ec8 (cdmlib): #5960 Use abbrevTitle for reference parsing
- 02:57 PM Revision b4f7840c (cdmlib): #5958 Fix NPE in findTaxaByName with missing clazz param (II)
- 02:41 PM Revision a1b73fc5 (cdmlib): minor
- 02:41 PM Revision 83b68cf9 (cdmlib): fix failing editor test because of updateSortindex in mergeEntityListener
- 02:30 PM Revision e8074ec5 (cdm-dataportal): #5890 Pass classification uuid and taxon uuid to csv export
- 02:11 PM Revision c9992d6a (taxeditor): minor
- 02:11 PM Revision a1127475 (cdmlib): #5958 Fix NPE in findTaxaByName with missing clazz param
- 02:08 PM Revision dfd55109 (taxeditor): smaller changes for specimen import
- 02:08 PM Revision 23cf0e8a (taxeditor): minor
- 02:02 PM Revision bd9c39e8 (cdmlib): Fix compile error in Print Publisher
- 01:50 PM Revision e27bf64b (taxeditor): Fix transient services
- 01:34 PM Revision a9f6d017 (cdmlib-apps): #5958 fix findByName in pesi
- 01:25 PM Revision 87971ac8 (taxeditor): set failing test to ignore see ticket #5959
- 01:23 PM Revision 9aa22b7e (cdmlib-apps): #5958 fix findByName in pesi
- 01:15 PM Revision f2babe22 (cdmlib): cleaning up and hamonizing contoller code
- 12:43 PM Revision 891d65aa (cdmlib): #5958 fix failing tests
- 12:14 PM Revision 3cf47767 (cdmlib): #5958 Implement name part search as web service
- 11:24 AM bug #5191 (Worksforme): TransmissionEngineDistribution stops before it is 100% done
- seems to be fixed by one the latest changes (most probably aadb17f) :
* 9b7db8d TransmissionEngineDistribution: sol... - 09:37 AM Revision 3de12c0d (cdm-dataportal): #5793 using new settings field status_glue to allow flexible configuration of the ditribution hierachy
- 08:32 AM Revision a180fd4f (cdmlib): #5957 Fix empty treeindexes
- 01:35 AM Revision 29a5f57c (cdmlib): #5957 Fix for facultative rank range
- 01:18 AM Revision 0429965c (cdmlib-apps): #5822 / #5892 Mexico rubiaceae import
- 01:16 AM Revision e49e778f (cdmlib-apps): Update eflora and pesi to v4.2.0
- 12:55 AM Revision 63f513d9 (cdmlib): #5957 mplement groupByHigherTaxon webservice
- 12:39 AM Revision 5ccb7fa7 (cdmlib): Cleanup
07/05/2016
- 06:01 PM Revision 4bfe18f9 (cdm-dataportal): #5768 removing whitespace
- 05:57 PM Revision f15267b0 (cdm-dataportal): function doc
- 04:38 PM Revision 834fb28c (cdm-dataportal): #5793 reverting last solution and using new defaults
- 04:12 PM Revision 88e8a1fe (cdm-dataportal): #5845 removing whitespace
- 04:06 PM feature request #5956 (Closed): Improve functionality and UX for (children display in) breadcrumb navigation - 2
- successor of #5852
1) remove transparency (needs to be discussed if needed): moved to #6312
2) mobile devic... - 04:00 PM bug #5861: Taxon appended phrase must not be in italics
- Replying to [[comment3|a.mueller]]:
> Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/d... - 03:59 PM Revision 379798fa (cdm-dataportal): #5861 missing css for appended-phrase
- 03:54 PM Revision d75e1586 (cdm-dataportal): #5904 fixing css for zen theme
- 03:06 PM Revision 13aed6c3 (cdmlib): set failing tests to ignore
- 03:03 PM Revision 08059fd5 (cdmlib): modernizing HttpClient usage in isServiceAvailable() method
- 03:02 PM Revision d2acf582 (taxeditor): minor
- 01:59 PM Revision 04b9479a (cdmlib): fix failing Polytomouskey test
- 01:45 PM feature request #5947: Type information for same field unit should be handled in one line
- "Or even better with abbreviate type status (e.g. HT instead of Holotype). "
Type status should not be abbreviated. ... - 10:02 AM feature request #5947 (New): Type information for same field unit should be handled in one line
- Currently each type designation has one line, but shouldn't if both types have the same field unit.
Example: htt... - 12:52 PM Revision 357386e4 (cdmlib): minor
- 12:52 PM Revision a0ee91b9 (cdmlib): Cleanup
- 12:00 PM Revision b467476c (cdmlib): #5681: move removeNullValueFromCollections to PostMergeEntityListener
- 11:47 AM feature request #5952 (Closed): Second cache field for specimen (identityCache)
- for more information see #5951
- 11:46 AM feature request #5951 (New): Add collector, field number and collection to specimen search label
- Currently the specimen search uses the specimen titleCache as search string. In the titleCache the collector, field n...
- 11:44 AM Revision 7042800d (cdmlib): isServiceAvailable test for MobotOpenUrlServiceWrapperTest
- 11:29 AM feature request #5950 (Duplicate): Add duplicate method for type designations
- Often users want to enter type designation data for a taxon name for multiple types (e.g. holotype and some isotypes)...
- 11:14 AM Revision 5f7cb15c (cdmlib): new method removeNullValues in CdmPreDataChangeListener
- 11:14 AM Revision 541f08b0 (cdmlib): remove updateSortindex and move removeNullValues to the mergeListener
- 10:34 AM Revision d3752fac (cdmlib): TransmissionEngineDistribution: setting lower min heap requirements for tests
- 10:28 AM bug #5948 (Closed): supress protologue icon if according media uri is missing
- http://api.cybertaxonomy.org/rubiaceae_mexico/portal/name/ea5142cd-8c09-4b0b-b57a-8a1e2c869be0/taxonNameDescriptions....
- 10:06 AM Revision 4bcc10d3 (cdmlib): TransmissionEngineDistribution avoiding weired exceptions in tests
- 09:37 AM Revision 9b7db8db (cdmlib): TransmissionEngineDistribution: solving problems with excessive heap consumption
- 09:37 AM Revision 0d0d2537 (cdmlib): DynamicBatch: a JVM resources aware batch manager
- 09:37 AM Revision aadb17f4 (cdmlib): #5191 fixing process monitor updating in TransmissionEngine
- this is most probably not fixing the ticket but helps providing more reliable monitoring
07/04/2016
- 11:34 PM Revision eee5ea0d (taxeditor): #5946 improve determination event label provider for unlabeled units or taxa
- 03:45 PM Revision e519dde1 (taxeditor): #5946 improve determination event label provider for unlabeled units or taxa
- 03:33 PM Revision 8eea1bc4 (taxeditor): #5930: disable text fields if no language is selected.
- 03:21 PM Revision 1d6463ca (taxeditor): #4018: don't allow to finish, if no language is selected, quick fix
- 03:06 PM bug #5945 (Closed): Deduplicate results from termloading by class
- 03:06 PM bug #5945: Deduplicate results from termloading by class
- Work around seems to work in TaxEditor
- 01:52 PM Revision d63fc1f3 (taxeditor): #5946 Implement/fix referencing objets label provider for TaxonNode and DerivationEvent
07/01/2016
- 02:46 PM Revision 82e3ca05 (taxeditor): fix save symbol of defined term
- 02:33 PM Revision 4344fddf (cdmlib): Adapt test dataset loading to standard path
- 02:13 PM Revision ec3ff238 (cdmlib): Fix dataset issue in persistence test and clean up
- 01:30 PM Revision 6c56ee87 (taxeditor): #5908: add a default representation to a term with no representation
- 01:15 PM Revision 969dbe3e (cdmlib): #5678: fix deletion of FeatureNodes and minor changes
- 01:15 PM Revision 794708a7 (cdmlib): advanced MediaDeletionConfigurator
- 01:10 PM Revision a1bd384c (taxeditor): minor
- 01:09 PM Revision 59e6f340 (taxeditor): #5678. fix deletion of feature nodes
- 12:53 PM bug #5945 (Resolved): Deduplicate results from termloading by class
- 12:53 PM bug #5945: Deduplicate results from termloading by class
- Fixed by r28535 / commit:f7a01923
- 12:46 PM bug #5945 (Closed): Deduplicate results from termloading by class
- The general problem is described in #5871
This ticket is a workaround until the general problem has been solved
... - 12:51 PM Revision 4cbd2815 (cdmlib): Clean up
- 12:50 PM Revision f7a01923 (cdmlib): #5945 Deduplicate results from termloading by class
- 11:41 AM task #5943 (Closed): back to search button/link should go into a drupal block
- The `admin/config/cdm_dataportal/settings/layout/taxon` offers the option:
~~~
[x] Show Back to search results ... - 11:21 AM Revision 1bc810db (taxeditor): #4630: fix search of bulkeditor if underlying data have changed
- 11:14 AM feature request #5942 (New): Advanced Search filter to exlude Distributions with status absent
- A filter option should be added to the Advanced Search exclude Distributions with status absent. This should be part ...
- 10:59 AM Revision a237ff3d (cdm-dataportal): missing whitespace in translation
06/30/2016
- 04:59 PM Revision a69df67a (cdm-dataportal): translation po files normalized for poedit
- 04:51 PM Revision 41cc9dd1 (cdmlib): #5941 Fix representation with missing language in Classbridge
- 04:46 PM Revision ab089d7d (cdm-dataportal): fixing Plural-Forms header in po file
- 04:34 PM Revision e8f96965 (taxeditor): Fix compile errors in transient services for loadByIds
- 04:19 PM Revision 579c485d (cdm-dataportal): rename search tab factual data >> content category
- 01:43 PM Revision 888ca58b (taxeditor): if multilanguage text isEmpty translation wizard does not open
- 01:35 PM Revision e3961ec3 (taxeditor): fix NPE in translation wizard
- 01:09 PM feature request #5936: Multilanguage Support for TextData
- Hallo,
mir fällt gerade auf, dass das Problem bei Espanol sein könnte, dass diese Sprache eigentlich nur über den C... - 12:38 PM feature request #5936 (New): Multilanguage Support for TextData
- It seems that TextData has no multi-language support yet in Dataportal.
Hallo,
die Eingabe von 2 Sprachve... - 01:08 PM bug #5938 (Closed): distribution and specimen maps can not be used on the same page
In tab-less taxon pages with distribution and georeferenced specimens the specimen map is broken.
test cases:...- 12:00 PM Revision 1ec74f53 (cdmlib): refactoring listByIds to loadByIds
- 09:44 AM Revision bee783cb (taxeditor): fix transient services
- 09:13 AM Revision e20defe1 (cdmlib): fix getUuidAndTitleCache for pattern with ?
06/29/2016
- 07:05 PM Revision 04f74f8d (cdm-dataportal): more translations
- 06:45 PM Revision 51384c70 (cdm-dataportal): more translations
- 06:29 PM feature request #5935 (New): use double line to separate concept relations from homotypic groups
- _Synonymie ... darunter mit Doppelstrich abgesetzt Konzeptsynonyme, nicht eingerückt. _
Examples:
* ...?
A... - 04:52 PM Revision 87926c7b (cdmlib): #4366 ignoring test for short time
- 04:48 PM Revision a67b8f0c (cdmlib): #5931 Fix taxon cache strategy does not reflect protected flag in sec
- reference
- 04:05 PM feature request #5177 (Closed): improve perfomance of TransmissionEngineDistribution
- local branch TransmissionEngine-speedup rebased on develop
- 04:01 PM feature request #4366 (Resolved): Transmissionengine Distribution: implement rules for source references
- implemented:
* f5295f3 [r28519 Transmissionengine aggregation of source references|* 92a6aa3 r28518] aggregation of... - 03:57 PM Revision f5295f3f (cdmlib): #4366 Transmissionengine aggregation of source references
- 03:57 PM Revision 92a6aa38 (cdmlib): #4366 aggregation of distribution sources implemented for by area aggregation
- 03:57 PM Revision f6299e47 (cdmlib): #4366 test for aggregation of distribution sources (byArea)
- 03:57 PM Revision 1b70bad3 (cdmlib): TransmissionEngine: modification to status compare function for case a==b
- 03:57 PM Revision 848f7204 (cdmlib): #5177 fixing tests which where broken after rebasing the TransmissionEngine-speedup on develop
- - lower rank limit of for the aggregation was too high
- 03:57 PM Revision 09023b8d (cdmlib): fixing bugs related to the rank intervall in the TransmissionEngineDistribution
- 03:57 PM Revision 869c3f85 (cdmlib): solving multiple problems in TransmissionEngine
- - avoiding LIE by fetching the parentAreas for each batch
- skipping taxa not in specified rank interval - 03:57 PM Revision 51f7c673 (cdmlib): performance improvement
- - avoiding cast
- avoiding sorting the list of taxa - 03:57 PM Revision 7659b935 (cdmlib): performance logging
- 03:57 PM Revision 2b92f449 (cdmlib): adding classificationLookup method to serice
- 03:57 PM Revision f4d35a72 (cdmlib): attempt to reduce the overhead imposed by database access
- 03:57 PM Revision 948c50f4 (cdmlib): typo
- 03:09 PM Revision 3056cfa7 (cdmlib): #5838 Fix taxon cache strategy for taxa with missing name
- 02:22 PM Revision 692dd91f (cdmlib): fix getUuidAndTitleCache for pattern with * or ?
- 01:55 PM Revision 1760dc20 (cdmlib-apps): #5791 Adapt type of E+M vocabulary.
- 01:14 PM Revision 3fa460e5 (taxeditor): #4018 let the right side of the translation wizard empty, fix the save problem for adding a neww representation for terms
- 01:14 PM Revision 43e73e89 (cdmlib): Add Feature.Notes to Markup-Transformer
- 11:39 AM Revision 0ab85ea9 (taxeditor): #4018: fix title of defined term details if global language is not the cdm default language
- 11:00 AM Revision 0238c919 (taxeditor): fix doubled title in DefinedTerm Details and fix filling of menu items for multilanguage support
- 09:43 AM Revision f1c17375 (taxeditor): #4018 fix NPE in DefaultTermComparator
- 09:40 AM bug #5926: Update labels in TermEditor for Vocabularies
- This is even the case after closing and opening the term editor.
- 09:37 AM bug #5926 (Closed): Update labels in TermEditor for Vocabularies
- If the label of a vocabulary is changed in term editor details view it is not updated in the term editor window.
... - 09:26 AM Revision 6a41d4dc (taxeditor): #4018 fix NPE
06/28/2016
- 05:55 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
- Replying to [[comment1|a.kohlbecker]]:
> Hallo Andreas,
>
> dem letzten Satz kann ich zustimmen: " es wäre in di... - 04:42 PM Revision 591e6642 (taxeditor): #5906 Fix potential NPE
- 04:19 PM bug #5861: Taxon appended phrase must not be in italics
- Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/dataportal/preview/flora-cuba/cdm_datapo...
- 03:29 PM Revision e0d5117b (cdmlib): fix UuidAndtitleCache methods for pattern with asterisk
- 03:10 PM Revision 92e38dee (cdm-dataportal): #5890 Rename function parameter
- 03:10 PM Revision bfda0eba (cdmlib): #5890 Adjust service method to work on taxon node instead of
- classification
- 02:54 PM Revision 51cc509a (cdm-dataportal): #5890 pass classification root node uuid as argument to autosuggest
- function
- 10:52 AM feature request #5736: Show sec reference for TaxonInteractions
- Works fine. Only remaining issue if possible: also add links like DOIs and URIs if available.
Example: http://test... - 10:08 AM Revision 61eb12d2 (taxeditor): #5898 change order of fields
- 09:11 AM Revision ef33e3aa (taxeditor): #3102 Move menu down
06/27/2016
- 05:26 PM bug #4821: Changing order of terms not possible
- The term still disappears if I try to move it. Reappears at old possition after reconnect.
What I did:
* created ... - 05:04 PM bug #5924 (Closed): Change password leads to bad credentials
- Changing the password currently does not login with new password and leads to a bad credentials exception.
There... - 05:02 PM Revision baabdf39 (cdmlib): git issues
- 05:00 PM Revision 21c87d73 (cdmlib): #5890 Use ModelAndView for portal controller
- 04:59 PM Revision 580b83e6 (cdmlib): #5890 Add service method to get the root node for a given classification
- 03:39 PM Revision c7fd5f24 (cdmlib): #5890 Use taxon nodes instead of classification for CSV export
- 03:38 PM Revision 6c5e37d9 (cdm-dataportal): #5890 Add option to list classification with rootNode uuid as key
- 03:21 PM Revision d0d4388c (cdmlib): #5890 Add new controller method to get the root node for a given
- classification
- 02:24 PM feature request #5922 (Closed): Change order in supplemental data view
- Rights and Credits are almost never used. Therefore we should move them to the end of the list. Otherwise one often n...
- 01:49 PM feature request #5921: Change symbol for congruence relationship.
- Hallo,
> Und das Zeichen beim Konzeptsynonym irritiert mich – sichere Kongruenz sollte doch das Gleichheitszeichen ... - 01:15 PM feature request #5921 (Closed): Change symbol for congruence relationship.
- Und das Zeichen beim Konzeptsynonym irritiert mich – sichere Kongruenz sollte doch das Gleichheitszeichen mit einem D...
- 01:00 PM bug #5710: Changing the database connection must reset all caches
- In Mexico Rubiaceae I observered that I added NamedAreaLevel und Type to existing areas but they resulted in wrong ID...
- 12:37 PM Revision baa11275 (taxeditor): Fix potential NPE
- 12:37 PM Revision 04a1d647 (cdm-dataportal): #5890 Rename auto-suggest function and add missing parameter
- 12:35 PM Revision 0a7c1eec (cdmlib): classifications
- 09:07 AM Revision bfde40f9 (cdmlib): #5890 Rename classification parameters to taxon node
- 09:06 AM Revision 00449f23 (cdm-dataportal): #5890 Rename classification parameters to taxon node
- 08:46 AM Revision a0563512 (cdmlib): #5890 trim code
- 08:44 AM Revision 65a94441 (cdm-dataportal): #5890 Add taxon filter to csv export
- 08:42 AM Revision 2eedcd33 (cdmlib): #5890 Rename classification parameters to taxon node
06/24/2016
- 12:17 PM feature request #5911 (Closed): deploy spanisch translation with the cdm_dataportal module
- done by e5bbcdb r28474 adding spanish translation for the cdm_dataportal and sub-modules
- 12:17 PM bug #5912 (Closed): translatable dynamic strings conform to drupal policy
- done by commit:cdm-dataportal|7cc085d (svn:r28476) fixing wrong usages of dynamic strings, using placeholders and avo...
- 12:16 PM Revision 7cc085da (cdm-dataportal): #5912 fixing wrong usages of dynamic strings, using placeholders and avoiding concatination
- 12:12 PM Revision e5bbcdba (cdm-dataportal): #5911 adding spanish translation for the cdm_dataportal and sub-modules
- 10:32 AM Revision 3fc0cf6c (cdmlib): #5916 Add (taxonomic) 'Notes' as new Feature to Feature vocabulary
06/23/2016
- 05:33 PM Revision bc036167 (taxeditor): Bug fix: CDMSequenceMatrixAdapter now defines valid columns for its character set.
- Draft for ExportSingleReadAlignmentWizard added.
- 04:42 PM Revision c363956a (cdmlib): #5909 revert unwanted commit
- 04:27 PM Revision 9f495932 (cdmlib): #5909 fix failing test
- 03:58 PM Revision dfabd5b6 (cdmlib): #5909 further improve referenced name parser
- 03:30 PM Revision cda3a81a (taxeditor): Molecular plugin adjusted to recent changes in JPhyloIO.
- 02:14 PM feature request #5914 (New): provide drupal installation profile for multilingual sites
- requires steps:
**1. install the required modules**
**IMPORTANT*: The translations supplied with the cdm_d... - 01:53 PM feature request #3385: install enable and configure WYSIWYG editors be default
- Using the ctools exportable feature seems to be rather complicated.
Directly operatinng on the database in contrast ... - 01:42 PM Revision 2b3cf93c (cdmlib): minor
- 01:40 PM Revision 1b426e5c (cdmlib): minor
- 01:18 PM Revision 43636c6c (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
- 01:17 PM Revision aad95ea0 (cdmlib): make the csv export more configurable
- 11:55 AM feature request #5913 (New): enable required i18n modules by default
- modules to download:
~~~
languageicons
i18n
l10n_update
imce
imce_wysiwyg
wysiwyg
admin_menu
~~~
... - 11:48 AM bug #5912 (Closed): translatable dynamic strings conform to drupal policy
- in many places of the code translatable dynamic strings are formed the wrong way. This becomes obvious when extractin...
- 11:23 AM feature request #5911: deploy spanisch translation with the cdm_dataportal module
- The inclusion of translations into the POT file seems to fail due to a couple of errors like these:
(only some exam... - 11:18 AM feature request #5911 (In Progress): deploy spanisch translation with the cdm_dataportal module
- 10:22 AM feature request #5911 (Closed): deploy spanisch translation with the cdm_dataportal module
- For the flora of cuba a spanisch translation of the site has been created #5665
This translation should be expor... - 10:44 AM Revision c5a8e428 (taxeditor): #5910 if the default language of the editor is not available then the Language.Default representation is used
- 10:03 AM Revision b5bbb82f (taxeditor): #5908 minor
- 09:57 AM Revision 01b09f61 (taxeditor): #5908: fix that the combo box on the left hand side contains only available languages
- 08:47 AM Revision cd123c06 (taxeditor): #4018 add missing RepresentationElement class
06/22/2016
- 10:49 PM Revision c1bd99b5 (cdm-dataportal): #5890 Rename auto-suggest function and add missing parameter
- 10:44 PM Revision c3977a0e (cdmlib): #5909 Improve referenced name parser, fix encoding and place published for article
- 09:30 PM Revision 5767d3eb (cdmlib): Add Factory method to Institution
- 09:23 PM Revision 8d292ee0 (cdmlib): #5909 Improve referenced name parser
- 05:38 PM Revision 4f5219a9 (cdmlib): #5909 Improve referenced name parser
- 03:23 PM Revision 2fab6704 (taxeditor): add multilanguage support for terms
- 03:16 PM bug #5907 (New): Advanced Search for taxa: search results seem to be unordered
- example:
http://test.e-taxonomy.eu/dataportal/preview/cyprus/?ws=portal%2Ftaxon%2Fsearch&query=&form_build_id=fo... - 03:12 PM Revision 1b8afcd8 (cdm-dataportal): #5768 taxonBase secundum microreference implemented
- 03:05 PM Revision cfe4872f (taxeditor): change sec reference micro reference to detail
- 02:13 PM feature request #5736 (Resolved): Show sec reference for TaxonInteractions
- fixed by : bddc8c75 r28452 setting the renderPath for all feature blocks
- 02:12 PM Revision ddc8c754 (cdm-dataportal): #5736 setting the renderPath for all feature blocks
- 12:54 PM feature request #5903: serve fontawesome icons directly from the portal (prevents users from being tracked by google)
- bug fix for this 793dae0
- 09:41 AM feature request #5903 (Closed): serve fontawesome icons directly from the portal (prevents users from being tracked by google)
- done 74f9f87 r28446
- 09:40 AM feature request #5903 (Closed): serve fontawesome icons directly from the portal (prevents users from being tracked by google)
- the fontawesome icons are currently served from the google CDN, this allows google to track users.
The fontawes... - 12:54 PM Revision 793dae0a (cdm-dataportal): #5903 fixing resource uri
- 12:18 PM Revision 7c0c59d8 (cdm-dataportal): #5851 handling special case of originalSource.citation == null
- 11:29 AM Revision bc400a17 (cdm-dataportal): #5904 Drupal block to show direct taxonomic children of a taxon
- 10:22 AM bug #5905 (New): remove empty homotypic-synonymy-group and clean up the synonymy page spacing and separator borders
- Taxon synonymy contains a homotypic-synonymy-group div even if this is empty.
This causes an extra separator line ... - 10:02 AM Revision 8b081489 (cdmlib): Adapt ined. for NonVrialNameParser #5896
- 09:58 AM Revision edc59764 (cdmlib): Add ined. to NonVrialNameParser #5896
- 09:58 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- first of all the question of how to model the citation into the db must be solved
- 09:41 AM Revision 74f9f871 (cdm-dataportal): #5903 serving fontawesome icons directly from the portal module
06/21/2016
- 07:43 PM Revision fd539f3b (taxeditor): i18n for factual data view
- 05:50 PM Revision f02a23b5 (cdmlib-apps): Add missing nomenclatural status and taxon relations to transformer
- #5448
- 05:50 PM Revision 026fe0de (cdmlib-apps): Add missing taxa to related objects #5448
- 05:46 PM feature request #5890 (In Progress): Implement auto-suggest for data portal
- Added taxon auto_suggest to portal setting with r28442
- 04:38 PM feature request #5890: Implement auto-suggest for data portal
- Ah ok, now it works.
The suggestions are however too unspecific.
For example after typing "Lac" in the cichorieae ... - 01:19 PM feature request #5890: Implement auto-suggest for data portal
- For some portals (especially Cuba Checklist) it might be required to switch of this features as there are very strict...
- 09:20 AM feature request #5890: Implement auto-suggest for data portal
- This is not working for. Even after clearing the drupal cache the autosuggest is not working.
Using the `taxon/sear... - 05:43 PM Revision 35bea66c (cdm-dataportal): Add taxon auto_suggest to portal setting #5890
- 05:26 PM feature request #5807: implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
- This is actually not a bug, the search is implemented that way.
However, from the users perspective it seems more in... - 04:03 PM Revision 30399ffa (cdm-dataportal): #4973 fixing advanced search area filter in webservice request preprocessing
- 04:03 PM Revision 01fff74a (cdm-dataportal): avoiding php Strict warning
- 04:03 PM Revision 0b8683d9 (cdm-dataportal): avoiding php Strict warning
- 04:03 PM Revision 9bbe3bcd (cdm-dataportal): minor syntax issues
- 04:03 PM Revision 146fef89 (cdm-dataportal): code cleaning
- 02:56 PM Revision 5988d8ff (cdmlib): #4149 workaround implemented for #2707 completely removed
- 02:56 PM Revision 9d39f227 (cdmlib-apps): Cleanup poms in cdmlib-app
- 02:39 PM Revision 27434a93 (cdmlib-apps): Add id_1 mapping to mexico
- 02:19 PM Revision 76815f89 (cdmlib): Cleanup OrderedTermBase
- 02:17 PM Revision 1887ea68 (cdmlib): Unignore GBIF Test
- 02:15 PM Revision b3c0ff0a (cdmlib): Fix failing test for syn. sec. (#5902) and clean up a bit
- 01:59 PM Revision 100e8ed6 (cdmlib-apps): Update cdmlib version
- 01:51 PM Revision 41d514e3 (taxeditor): i18n for changing password #3102
- 01:51 PM Revision 144153b3 (taxeditor): Trim code #3102
- 01:51 PM Revision ab81561c (taxeditor): Add menu entry for password dialog to main menu #3102
- 01:51 PM Revision 8f7bda11 (taxeditor): Trim code #3102
- 01:47 PM Revision cf90f197 (taxeditor): new NomenclaturalPersonAuthorSelectionDialog
- 01:45 PM Revision e109fb7a (cdmlib): Use syn. sec. instead of sec. for synonym sec references #5902
- 01:30 PM Revision ceee3276 (taxeditor): minor
- 01:00 PM Revision 8f5ccc1e (taxeditor): add nomenclatural author search for team members
- 11:47 AM Revision 2016e6e8 (taxeditor): Fix i18n #5146
- 11:39 AM feature request #4294: order of map legend entries conforms to term order
- Priority increase to have a look to the ticket if time is left until version 1.0 of the portal
Create new ticket fo... - 11:19 AM Revision 3ccceecb (taxeditor): German I18n for RemoteLoginDialog #5146
- 10:51 AM bug #3788: sort order of search results broken in free-text taxon search
- Please test if still an open issue
- 10:50 AM task #4978: Further performance improvement of portal/taxon/{uuid}/media
- For E+M we could choose a solution where we completely disable all media related functions in the portal and thus sup...
- 10:35 AM Revision ad6b62ca (cdmlib-apps): Fix ClassCastException, improve taxon name check, fix rank evaluation
- #5448
- 10:34 AM Revision 271ec193 (taxeditor): I18n for RemoteLoginDialog #5146
- 10:31 AM Revision 6e842c77 (cdm-dataportal): Fix typo in function name #5890
- 10:20 AM Revision 6a70366c (taxeditor): Fix typo
- 08:37 AM Revision 5d53f076 (taxeditor): Refactor identifier section classes #5898
- - add abstract identifier section to support IdentifiableEntities and
DerivedUnitFacades
06/20/2016
- 06:25 PM Revision 7e65b368 (taxeditor): Add identifer section to supplemental data view #5898
- 05:08 PM Revision b2ce7834 (cdmlib-apps): Update to mexico import #5822 / #5892
- 03:29 PM feature request #5890 (Resolved): Implement auto-suggest for data portal
- Implemented auto suggest based on TaxonListController.doSearch() with r28412
- 03:28 PM Revision 93ae67cc (cdm-dataportal): Implemented auto suggest for taxon search in data portal #5890
- 01:45 PM Revision 15e79265 (cdm-vaadin): Fix test (There are 29 relation types now)
- 01:16 PM Revision 6bd0f9a3 (cdmlib): Add "ined." as nomenclatural status #5896
- 11:56 AM Revision 46b49536 (cdmlib): Add taxon relationship types "unclear" and "not yet worked on" #5895
- 10:48 AM Revision 766713c7 (cdmlib-apps): Import synonyms of other classifications #5448
- 10:48 AM Revision e2cf0d65 (cdmlib-apps): Set sec reference for all taxa #5448
06/17/2016
- 11:47 PM Revision 4066cdd4 (cdmlib-apps): minor
- 11:47 PM Revision 11b06c28 (cdmlib-apps): First version of Mexico import #5822
- 05:11 PM task #5083: Alternative image viewer for dataportal
- Replying to [[comment2|a.kohlbecker]]:
> To all
>
> please test both viewers with mobile devices. Are both suitab... - 03:07 PM Revision 842835ee (cdmlib-apps): improve fauna europaea author import
- 02:57 PM Revision 757377b5 (taxeditor): fix concurrentModificationException
- 01:02 PM Revision f9540b36 (cdmlib): fix getUUIDAndTitleCache for references
- 09:28 AM Revision feff51af (taxeditor): fix compile errros in classification service
06/16/2016
- 05:49 PM Revision fab2c158 (cdm-dataportal): fixing problem with appenden phrases in case of secreference being NULL
- 04:58 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
- this is an important contribution to the version:"PESI ready for EU-BON"
- 04:38 PM feature request #5882: option (as new default) to show full citation of accepted name below taxon page title
- Replying to [[comment2|a.mueller]]:
> What about those portals not using tabs. Do they also need to have the fully r... - 04:10 PM Revision 133c6e1e (cdmlib): #5536 avoiding LIE
- 03:50 PM Revision b1b56d64 (cdm-dataportal): adapting test run script to changes in debian packages : iceweasel is now firefox-esr
- 02:19 PM Revision 54f644bf (taxeditor): fix missing method in transient class
- 01:04 PM Revision 6ecf3322 (taxeditor): fix #5363
- 11:39 AM Revision de5abb9d (taxeditor): documentation
- 12:28 AM Revision 183973c8 (cdmlib): #5852 dao, service and controler for taxonNode sibling retrieval
- 12:27 AM Revision 0af3ce28 (cdm-dataportal): #5887 #5852 classification breadcrumbs navigation implemented
06/15/2016
- 06:48 PM Revision 5c6cfa03 (cdmlib): Fix Gbif test
- 06:28 PM Revision e2d1e669 (cdmlib): tmp ignore gbif test
- 05:30 PM Revision af7b78c4 (cdmlib): Move E+M condensed string test
- 05:30 PM Revision 151d5976 (cdmlib): Fix failing test for Euro+Med condensed string
- 05:30 PM Revision ebb64431 (cdmlib): Fix NPE for distributions without area in composer
- 01:13 PM feature request #5891 (Closed): Taxon appended phrase should not allow empty string
- Currently, when deleting the appended phrase field in taxon an empty string is stored in the database. Null should be...
- 10:31 AM feature request #5890 (New): Implement auto-suggest for data portal
- This could be useful for
* taxon search
* taxon/classification filter for CSV export
* ...
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