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From 06/06/2016 to 07/05/2016

07/05/2016

06:01 PM Revision 4bfe18f9 (cdm-dataportal): #5768 removing whitespace
Andreas Kohlbecker
05:57 PM Revision f15267b0 (cdm-dataportal): function doc
Andreas Kohlbecker
04:38 PM Revision 834fb28c (cdm-dataportal): #5793 reverting last solution and using new defaults
Andreas Kohlbecker
04:12 PM Revision 88e8a1fe (cdm-dataportal): #5845 removing whitespace
Andreas Kohlbecker
04:06 PM feature request #5956 (Closed): Improve functionality and UX for (children display in) breadcrumb navigation - 2
successor of #5852
1) remove transparency (needs to be discussed if needed): moved to #6312
2) mobile devic...
Andreas Kohlbecker
04:00 PM bug #5861: Taxon appended phrase must not be in italics
Replying to [[comment3|a.mueller]]:
> Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/d...
Andreas Kohlbecker
03:59 PM Revision 379798fa (cdm-dataportal): #5861 missing css for appended-phrase
Andreas Kohlbecker
03:54 PM Revision d75e1586 (cdm-dataportal): #5904 fixing css for zen theme
Andreas Kohlbecker
03:06 PM Revision 13aed6c3 (cdmlib): set failing tests to ignore
Katja Luther
03:03 PM Revision 08059fd5 (cdmlib): modernizing HttpClient usage in isServiceAvailable() method
Andreas Kohlbecker
03:02 PM Revision d2acf582 (taxeditor): minor
Katja Luther
01:59 PM Revision 04b9479a (cdmlib): fix failing Polytomouskey test
Katja Luther
01:45 PM feature request #5947: Type information for same field unit should be handled in one line
"Or even better with abbreviate type status (e.g. HT instead of Holotype). "
Type status should not be abbreviated. ...
Wolf-Henning Kusber
10:02 AM feature request #5947 (New): Type information for same field unit should be handled in one line
Currently each type designation has one line, but shouldn't if both types have the same field unit.
Example: htt...
Andreas Müller
12:52 PM Revision 357386e4 (cdmlib): minor
Andreas Müller
12:52 PM Revision a0ee91b9 (cdmlib): Cleanup
Andreas Müller
12:00 PM Revision b467476c (cdmlib): #5681: move removeNullValueFromCollections to PostMergeEntityListener
Katja Luther
11:47 AM feature request #5952 (Closed): Second cache field for specimen (identityCache)
for more information see #5951
Andreas Müller
11:46 AM feature request #5951 (New): Add collector, field number and collection to specimen search label
Currently the specimen search uses the specimen titleCache as search string. In the titleCache the collector, field n... Andreas Müller
11:44 AM Revision 7042800d (cdmlib): isServiceAvailable test for MobotOpenUrlServiceWrapperTest
Andreas Kohlbecker
11:29 AM feature request #5950 (Duplicate): Add duplicate method for type designations
Often users want to enter type designation data for a taxon name for multiple types (e.g. holotype and some isotypes)... Andreas Müller
11:14 AM Revision 5f7cb15c (cdmlib): new method removeNullValues in CdmPreDataChangeListener
Katja Luther
11:14 AM Revision 541f08b0 (cdmlib): remove updateSortindex and move removeNullValues to the mergeListener
Katja Luther
10:34 AM Revision d3752fac (cdmlib): TransmissionEngineDistribution: setting lower min heap requirements for tests
Andreas Kohlbecker
10:28 AM bug #5948 (Closed): supress protologue icon if according media uri is missing
http://api.cybertaxonomy.org/rubiaceae_mexico/portal/name/ea5142cd-8c09-4b0b-b57a-8a1e2c869be0/taxonNameDescriptions.... Andreas Kohlbecker
10:06 AM Revision 4bcc10d3 (cdmlib): TransmissionEngineDistribution avoiding weired exceptions in tests
Andreas Kohlbecker
09:37 AM Revision 9b7db8db (cdmlib): TransmissionEngineDistribution: solving problems with excessive heap consumption
Andreas Kohlbecker
09:37 AM Revision 0d0d2537 (cdmlib): DynamicBatch: a JVM resources aware batch manager
Andreas Kohlbecker
09:37 AM Revision aadb17f4 (cdmlib): #5191 fixing process monitor updating in TransmissionEngine
this is most probably not fixing the ticket but helps providing more reliable monitoring Andreas Kohlbecker

07/04/2016

11:34 PM Revision eee5ea0d (taxeditor): #5946 improve determination event label provider for unlabeled units or taxa
Andreas Müller
03:45 PM Revision e519dde1 (taxeditor): #5946 improve determination event label provider for unlabeled units or taxa
Andreas Müller
03:33 PM Revision 8eea1bc4 (taxeditor): #5930: disable text fields if no language is selected.
Katja Luther
03:21 PM Revision 1d6463ca (taxeditor): #4018: don't allow to finish, if no language is selected, quick fix
Katja Luther
03:06 PM bug #5945 (Closed): Deduplicate results from termloading by class
Andreas Müller
03:06 PM bug #5945: Deduplicate results from termloading by class
Work around seems to work in TaxEditor
Andreas Müller
01:52 PM Revision d63fc1f3 (taxeditor): #5946 Implement/fix referencing objets label provider for TaxonNode and DerivationEvent
Andreas Müller

07/01/2016

02:46 PM Revision 82e3ca05 (taxeditor): fix save symbol of defined term
Katja Luther
02:33 PM Revision 4344fddf (cdmlib): Adapt test dataset loading to standard path
Andreas Müller
02:13 PM Revision ec3ff238 (cdmlib): Fix dataset issue in persistence test and clean up
Andreas Müller
01:30 PM Revision 6c56ee87 (taxeditor): #5908: add a default representation to a term with no representation
Katja Luther
01:15 PM Revision 969dbe3e (cdmlib): #5678: fix deletion of FeatureNodes and minor changes
Katja Luther
01:15 PM Revision 794708a7 (cdmlib): advanced MediaDeletionConfigurator
Katja Luther
01:10 PM Revision a1bd384c (taxeditor): minor
Katja Luther
01:09 PM Revision 59e6f340 (taxeditor): #5678. fix deletion of feature nodes
Katja Luther
12:53 PM bug #5945 (Resolved): Deduplicate results from termloading by class
Andreas Müller
12:53 PM bug #5945: Deduplicate results from termloading by class
Fixed by r28535 / commit:f7a01923
Andreas Müller
12:46 PM bug #5945 (Closed): Deduplicate results from termloading by class
The general problem is described in #5871
This ticket is a workaround until the general problem has been solved
...
Andreas Müller
12:51 PM Revision 4cbd2815 (cdmlib): Clean up
Andreas Müller
12:50 PM Revision f7a01923 (cdmlib): #5945 Deduplicate results from termloading by class
Andreas Müller
11:41 AM task #5943 (Closed): back to search button/link should go into a drupal block
The `admin/config/cdm_dataportal/settings/layout/taxon` offers the option:
~~~
[x] Show Back to search results ...
Andreas Kohlbecker
11:21 AM Revision 1bc810db (taxeditor): #4630: fix search of bulkeditor if underlying data have changed
Katja Luther
11:14 AM feature request #5942 (New): Advanced Search filter to exlude Distributions with status absent
A filter option should be added to the Advanced Search exclude Distributions with status absent. This should be part ... Andreas Kohlbecker
10:59 AM Revision a237ff3d (cdm-dataportal): missing whitespace in translation
Andreas Kohlbecker

06/30/2016

04:59 PM Revision a69df67a (cdm-dataportal): translation po files normalized for poedit
Andreas Kohlbecker
04:51 PM Revision 41cc9dd1 (cdmlib): #5941 Fix representation with missing language in Classbridge
Andreas Müller
04:46 PM Revision ab089d7d (cdm-dataportal): fixing Plural-Forms header in po file
Andreas Kohlbecker
04:34 PM Revision e8f96965 (taxeditor): Fix compile errors in transient services for loadByIds
Andreas Müller
04:19 PM Revision 579c485d (cdm-dataportal): rename search tab factual data >> content category
Andreas Kohlbecker
01:43 PM Revision 888ca58b (taxeditor): if multilanguage text isEmpty translation wizard does not open
Katja Luther
01:35 PM Revision e3961ec3 (taxeditor): fix NPE in translation wizard
Katja Luther
01:09 PM feature request #5936: Multilanguage Support for TextData
Hallo,
mir fällt gerade auf, dass das Problem bei Espanol sein könnte, dass diese Sprache eigentlich nur über den C...
Andreas Müller
12:38 PM feature request #5936 (New): Multilanguage Support for TextData
It seems that TextData has no multi-language support yet in Dataportal.
Hallo,
die Eingabe von 2 Sprachve...
Andreas Müller
01:08 PM bug #5938 (Closed): distribution and specimen maps can not be used on the same page

In tab-less taxon pages with distribution and georeferenced specimens the specimen map is broken.
test cases:...
Andreas Kohlbecker
12:00 PM Revision 1ec74f53 (cdmlib): refactoring listByIds to loadByIds
Andreas Kohlbecker
09:44 AM Revision bee783cb (taxeditor): fix transient services
Katja Luther
09:13 AM Revision e20defe1 (cdmlib): fix getUuidAndTitleCache for pattern with ?
Katja Luther

06/29/2016

07:05 PM Revision 04f74f8d (cdm-dataportal): more translations
Andreas Kohlbecker
06:45 PM Revision 51384c70 (cdm-dataportal): more translations
Andreas Kohlbecker
06:29 PM feature request #5935 (New): use double line to separate concept relations from homotypic groups
_Synonymie ... darunter mit Doppelstrich abgesetzt Konzeptsynonyme, nicht eingerückt. _
Examples:
* ...?
A...
Andreas Kohlbecker
04:52 PM Revision 87926c7b (cdmlib): #4366 ignoring test for short time
Andreas Kohlbecker
04:48 PM Revision a67b8f0c (cdmlib): #5931 Fix taxon cache strategy does not reflect protected flag in sec
reference Andreas Müller
04:05 PM feature request #5177 (Closed): improve perfomance of TransmissionEngineDistribution
local branch TransmissionEngine-speedup rebased on develop
Andreas Kohlbecker
04:01 PM feature request #4366 (Resolved): Transmissionengine Distribution: implement rules for source references
implemented:
* f5295f3 [r28519 Transmissionengine aggregation of source references|* 92a6aa3 r28518] aggregation of...
Andreas Kohlbecker
03:57 PM Revision f5295f3f (cdmlib): #4366 Transmissionengine aggregation of source references
Andreas Kohlbecker
03:57 PM Revision 92a6aa38 (cdmlib): #4366 aggregation of distribution sources implemented for by area aggregation
Andreas Kohlbecker
03:57 PM Revision f6299e47 (cdmlib): #4366 test for aggregation of distribution sources (byArea)
Andreas Kohlbecker
03:57 PM Revision 1b70bad3 (cdmlib): TransmissionEngine: modification to status compare function for case a==b
Andreas Kohlbecker
03:57 PM Revision 848f7204 (cdmlib): #5177 fixing tests which where broken after rebasing the TransmissionEngine-speedup on develop
- lower rank limit of for the aggregation was too high Andreas Kohlbecker
03:57 PM Revision 09023b8d (cdmlib): fixing bugs related to the rank intervall in the TransmissionEngineDistribution
Andreas Kohlbecker
03:57 PM Revision 869c3f85 (cdmlib): solving multiple problems in TransmissionEngine
- avoiding LIE by fetching the parentAreas for each batch
- skipping taxa not in specified rank interval
Andreas Kohlbecker
03:57 PM Revision 51f7c673 (cdmlib): performance improvement
- avoiding cast
- avoiding sorting the list of taxa
Andreas Kohlbecker
03:57 PM Revision 7659b935 (cdmlib): performance logging
Andreas Kohlbecker
03:57 PM Revision 2b92f449 (cdmlib): adding classificationLookup method to serice
Andreas Kohlbecker
03:57 PM Revision f4d35a72 (cdmlib): attempt to reduce the overhead imposed by database access
Andreas Kohlbecker
03:57 PM Revision 948c50f4 (cdmlib): typo
Andreas Kohlbecker
03:09 PM Revision 3056cfa7 (cdmlib): #5838 Fix taxon cache strategy for taxa with missing name
Andreas Müller
02:22 PM Revision 692dd91f (cdmlib): fix getUuidAndTitleCache for pattern with * or ?
Katja Luther
01:55 PM Revision 1760dc20 (cdmlib-apps): #5791 Adapt type of E+M vocabulary.
Andreas Müller
01:14 PM Revision 3fa460e5 (taxeditor): #4018 let the right side of the translation wizard empty, fix the save problem for adding a neww representation for terms
Katja Luther
01:14 PM Revision 43e73e89 (cdmlib): Add Feature.Notes to Markup-Transformer
Andreas Müller
11:39 AM Revision 0ab85ea9 (taxeditor): #4018: fix title of defined term details if global language is not the cdm default language
Katja Luther
11:00 AM Revision 0238c919 (taxeditor): fix doubled title in DefinedTerm Details and fix filling of menu items for multilanguage support
Katja Luther
09:43 AM Revision f1c17375 (taxeditor): #4018 fix NPE in DefaultTermComparator
Katja Luther
09:40 AM bug #5926: Update labels in TermEditor for Vocabularies
This is even the case after closing and opening the term editor.
Andreas Müller
09:37 AM bug #5926 (Closed): Update labels in TermEditor for Vocabularies
If the label of a vocabulary is changed in term editor details view it is not updated in the term editor window.
...
Andreas Müller
09:26 AM Revision 6a41d4dc (taxeditor): #4018 fix NPE
Katja Luther

06/28/2016

05:55 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
Replying to [[comment1|a.kohlbecker]]:
> Hallo Andreas,
>
> dem letzten Satz kann ich zustimmen: " es wäre in di...
Andreas Kohlbecker
04:42 PM Revision 591e6642 (taxeditor): #5906 Fix potential NPE
Patrick Plitzner
04:19 PM bug #5861: Taxon appended phrase must not be in italics
Unfortunately this is not yet fixed. I tested with http://test.e-taxonomy.eu/dataportal/preview/flora-cuba/cdm_datapo... Andreas Müller
03:29 PM Revision e0d5117b (cdmlib): fix UuidAndtitleCache methods for pattern with asterisk
Katja Luther
03:10 PM Revision 92e38dee (cdm-dataportal): #5890 Rename function parameter
Patrick Plitzner
03:10 PM Revision bfda0eba (cdmlib): #5890 Adjust service method to work on taxon node instead of
classification Patrick Plitzner
02:54 PM Revision 51cc509a (cdm-dataportal): #5890 pass classification root node uuid as argument to autosuggest
function Patrick Plitzner
10:52 AM feature request #5736: Show sec reference for TaxonInteractions
Works fine. Only remaining issue if possible: also add links like DOIs and URIs if available.
Example: http://test...
Andreas Müller
10:08 AM Revision 61eb12d2 (taxeditor): #5898 change order of fields
Patrick Plitzner
09:11 AM Revision ef33e3aa (taxeditor): #3102 Move menu down
Patrick Plitzner

06/27/2016

05:26 PM bug #4821: Changing order of terms not possible
The term still disappears if I try to move it. Reappears at old possition after reconnect.
What I did:
* created ...
Andreas Müller
05:04 PM bug #5924 (Closed): Change password leads to bad credentials
Changing the password currently does not login with new password and leads to a bad credentials exception.
There...
Andreas Müller
05:02 PM Revision baabdf39 (cdmlib): git issues
Patrick Plitzner
05:00 PM Revision 21c87d73 (cdmlib): #5890 Use ModelAndView for portal controller
Patrick Plitzner
04:59 PM Revision 580b83e6 (cdmlib): #5890 Add service method to get the root node for a given classification
Patrick Plitzner
03:39 PM Revision c7fd5f24 (cdmlib): #5890 Use taxon nodes instead of classification for CSV export
Patrick Plitzner
03:38 PM Revision 6c5e37d9 (cdm-dataportal): #5890 Add option to list classification with rootNode uuid as key
Patrick Plitzner
03:21 PM Revision d0d4388c (cdmlib): #5890 Add new controller method to get the root node for a given
classification Patrick Plitzner
02:24 PM feature request #5922 (Closed): Change order in supplemental data view
Rights and Credits are almost never used. Therefore we should move them to the end of the list. Otherwise one often n... Andreas Müller
01:49 PM feature request #5921: Change symbol for congruence relationship.
Hallo,
> Und das Zeichen beim Konzeptsynonym irritiert mich – sichere Kongruenz sollte doch das Gleichheitszeichen ...
Andreas Müller
01:15 PM feature request #5921 (Closed): Change symbol for congruence relationship.
Und das Zeichen beim Konzeptsynonym irritiert mich – sichere Kongruenz sollte doch das Gleichheitszeichen mit einem D... Andreas Müller
01:00 PM bug #5710: Changing the database connection must reset all caches
In Mexico Rubiaceae I observered that I added NamedAreaLevel und Type to existing areas but they resulted in wrong ID... Andreas Müller
12:37 PM Revision baa11275 (taxeditor): Fix potential NPE
Patrick Plitzner
12:37 PM Revision 04a1d647 (cdm-dataportal): #5890 Rename auto-suggest function and add missing parameter
Patrick Plitzner
12:35 PM Revision 0a7c1eec (cdmlib): classifications
Patrick Plitzner
09:07 AM Revision bfde40f9 (cdmlib): #5890 Rename classification parameters to taxon node
Patrick Plitzner
09:06 AM Revision 00449f23 (cdm-dataportal): #5890 Rename classification parameters to taxon node
Patrick Plitzner
08:46 AM Revision a0563512 (cdmlib): #5890 trim code
Patrick Plitzner
08:44 AM Revision 65a94441 (cdm-dataportal): #5890 Add taxon filter to csv export
Patrick Plitzner
08:42 AM Revision 2eedcd33 (cdmlib): #5890 Rename classification parameters to taxon node
Patrick Plitzner

06/24/2016

12:17 PM feature request #5911 (Closed): deploy spanisch translation with the cdm_dataportal module
done by e5bbcdb r28474 adding spanish translation for the cdm_dataportal and sub-modules
Andreas Kohlbecker
12:17 PM bug #5912 (Closed): translatable dynamic strings conform to drupal policy
done by commit:cdm-dataportal|7cc085d (svn:r28476) fixing wrong usages of dynamic strings, using placeholders and avo... Andreas Kohlbecker
12:16 PM Revision 7cc085da (cdm-dataportal): #5912 fixing wrong usages of dynamic strings, using placeholders and avoiding concatination
Andreas Kohlbecker
12:12 PM Revision e5bbcdba (cdm-dataportal): #5911 adding spanish translation for the cdm_dataportal and sub-modules
Andreas Kohlbecker
10:32 AM Revision 3fc0cf6c (cdmlib): #5916 Add (taxonomic) 'Notes' as new Feature to Feature vocabulary
Andreas Müller

06/23/2016

05:33 PM Revision bc036167 (taxeditor): Bug fix: CDMSequenceMatrixAdapter now defines valid columns for its character set.
Draft for ExportSingleReadAlignmentWizard added. Ben Stöver
04:42 PM Revision c363956a (cdmlib): #5909 revert unwanted commit
Andreas Müller
04:27 PM Revision 9f495932 (cdmlib): #5909 fix failing test
Andreas Müller
03:58 PM Revision dfabd5b6 (cdmlib): #5909 further improve referenced name parser
Andreas Müller
03:30 PM Revision cda3a81a (taxeditor): Molecular plugin adjusted to recent changes in JPhyloIO.
Ben Stöver
02:14 PM feature request #5914 (New): provide drupal installation profile for multilingual sites
requires steps:
**1. install the required modules**
**IMPORTANT*: The translations supplied with the cdm_d...
Andreas Kohlbecker
01:53 PM feature request #3385: install enable and configure WYSIWYG editors be default
Using the ctools exportable feature seems to be rather complicated.
Directly operatinng on the database in contrast ...
Andreas Kohlbecker
01:42 PM Revision 2b3cf93c (cdmlib): minor
Katja Luther
01:40 PM Revision 1b426e5c (cdmlib): minor
Katja Luther
01:18 PM Revision 43636c6c (cdmlib): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/cdmlib into develop
Katja Luther
01:17 PM Revision aad95ea0 (cdmlib): make the csv export more configurable
Katja Luther
11:55 AM feature request #5913 (New): enable required i18n modules by default
modules to download:
~~~
languageicons
i18n
l10n_update
imce
imce_wysiwyg
wysiwyg
admin_menu
~~~
...
Andreas Kohlbecker
11:48 AM bug #5912 (Closed): translatable dynamic strings conform to drupal policy
in many places of the code translatable dynamic strings are formed the wrong way. This becomes obvious when extractin... Andreas Kohlbecker
11:23 AM feature request #5911: deploy spanisch translation with the cdm_dataportal module
The inclusion of translations into the POT file seems to fail due to a couple of errors like these:
(only some exam...
Andreas Kohlbecker
11:18 AM feature request #5911 (In Progress): deploy spanisch translation with the cdm_dataportal module
Andreas Kohlbecker
10:22 AM feature request #5911 (Closed): deploy spanisch translation with the cdm_dataportal module
For the flora of cuba a spanisch translation of the site has been created #5665
This translation should be expor...
Andreas Kohlbecker
10:44 AM Revision c5a8e428 (taxeditor): #5910 if the default language of the editor is not available then the Language.Default representation is used
Katja Luther
10:03 AM Revision b5bbb82f (taxeditor): #5908 minor
Katja Luther
09:57 AM Revision 01b09f61 (taxeditor): #5908: fix that the combo box on the left hand side contains only available languages
Katja Luther
08:47 AM Revision cd123c06 (taxeditor): #4018 add missing RepresentationElement class
Katja Luther

06/22/2016

10:49 PM Revision c1bd99b5 (cdm-dataportal): #5890 Rename auto-suggest function and add missing parameter
Patrick Plitzner
10:44 PM Revision c3977a0e (cdmlib): #5909 Improve referenced name parser, fix encoding and place published for article
Andreas Müller
09:30 PM Revision 5767d3eb (cdmlib): Add Factory method to Institution
Andreas Müller
09:23 PM Revision 8d292ee0 (cdmlib): #5909 Improve referenced name parser
Andreas Müller
05:38 PM Revision 4f5219a9 (cdmlib): #5909 Improve referenced name parser
Andreas Müller
03:23 PM Revision 2fab6704 (taxeditor): add multilanguage support for terms
Katja Luther
03:16 PM bug #5907 (New): Advanced Search for taxa: search results seem to be unordered
example:
http://test.e-taxonomy.eu/dataportal/preview/cyprus/?ws=portal%2Ftaxon%2Fsearch&query=&form_build_id=fo...
Andreas Kohlbecker
03:12 PM Revision 1b8afcd8 (cdm-dataportal): #5768 taxonBase secundum microreference implemented
Andreas Kohlbecker
03:05 PM Revision cfe4872f (taxeditor): change sec reference micro reference to detail
Katja Luther
02:13 PM feature request #5736 (Resolved): Show sec reference for TaxonInteractions
fixed by : bddc8c75 r28452 setting the renderPath for all feature blocks
Andreas Kohlbecker
02:12 PM Revision ddc8c754 (cdm-dataportal): #5736 setting the renderPath for all feature blocks
Andreas Kohlbecker
12:54 PM feature request #5903: serve fontawesome icons directly from the portal (prevents users from being tracked by google)
bug fix for this 793dae0
Andreas Kohlbecker
09:41 AM feature request #5903 (Closed): serve fontawesome icons directly from the portal (prevents users from being tracked by google)
done 74f9f87 r28446
Andreas Kohlbecker
09:40 AM feature request #5903 (Closed): serve fontawesome icons directly from the portal (prevents users from being tracked by google)
the fontawesome icons are currently served from the google CDN, this allows google to track users.
The fontawes...
Andreas Kohlbecker
12:54 PM Revision 793dae0a (cdm-dataportal): #5903 fixing resource uri
Andreas Kohlbecker
12:18 PM Revision 7c0c59d8 (cdm-dataportal): #5851 handling special case of originalSource.citation == null
Andreas Kohlbecker
11:29 AM Revision bc400a17 (cdm-dataportal): #5904 Drupal block to show direct taxonomic children of a taxon
Andreas Kohlbecker
10:22 AM bug #5905 (New): remove empty homotypic-synonymy-group and clean up the synonymy page spacing and separator borders
Taxon synonymy contains a homotypic-synonymy-group div even if this is empty.
This causes an extra separator line ...
Andreas Kohlbecker
10:02 AM Revision 8b081489 (cdmlib): Adapt ined. for NonVrialNameParser #5896
Andreas Müller
09:58 AM Revision edc59764 (cdmlib): Add ined. to NonVrialNameParser #5896
Andreas Müller
09:58 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
first of all the question of how to model the citation into the db must be solved
Andreas Kohlbecker
09:41 AM Revision 74f9f871 (cdm-dataportal): #5903 serving fontawesome icons directly from the portal module
Andreas Kohlbecker

06/21/2016

07:43 PM Revision fd539f3b (taxeditor): i18n for factual data view
Patrick Plitzner
05:50 PM Revision f02a23b5 (cdmlib-apps): Add missing nomenclatural status and taxon relations to transformer
#5448 Patrick Plitzner
05:50 PM Revision 026fe0de (cdmlib-apps): Add missing taxa to related objects #5448
Patrick Plitzner
05:46 PM feature request #5890 (In Progress): Implement auto-suggest for data portal
Added taxon auto_suggest to portal setting with r28442
Patrick Plitzner
04:38 PM feature request #5890: Implement auto-suggest for data portal
Ah ok, now it works.
The suggestions are however too unspecific.
For example after typing "Lac" in the cichorieae ...
Andreas Kohlbecker
01:19 PM feature request #5890: Implement auto-suggest for data portal
For some portals (especially Cuba Checklist) it might be required to switch of this features as there are very strict... Andreas Müller
09:20 AM feature request #5890: Implement auto-suggest for data portal
This is not working for. Even after clearing the drupal cache the autosuggest is not working.
Using the `taxon/sear...
Andreas Kohlbecker
05:43 PM Revision 35bea66c (cdm-dataportal): Add taxon auto_suggest to portal setting #5890
Patrick Plitzner
05:26 PM feature request #5807: Implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
This is actually not a bug, the search is implemented that way.
However, from the users perspective it seems more in...
Andreas Kohlbecker
04:03 PM Revision 30399ffa (cdm-dataportal): #4973 fixing advanced search area filter in webservice request preprocessing
Andreas Kohlbecker
04:03 PM Revision 01fff74a (cdm-dataportal): avoiding php Strict warning
Andreas Kohlbecker
04:03 PM Revision 0b8683d9 (cdm-dataportal): avoiding php Strict warning
Andreas Kohlbecker
04:03 PM Revision 9bbe3bcd (cdm-dataportal): minor syntax issues
Andreas Kohlbecker
04:03 PM Revision 146fef89 (cdm-dataportal): code cleaning
Andreas Kohlbecker
02:56 PM Revision 5988d8ff (cdmlib): #4149 workaround implemented for #2707 completely removed
Andreas Kohlbecker
02:56 PM Revision 9d39f227 (cdmlib-apps): Cleanup poms in cdmlib-app
Andreas Müller
02:39 PM Revision 27434a93 (cdmlib-apps): Add id_1 mapping to mexico
Andreas Müller
02:19 PM Revision 76815f89 (cdmlib): Cleanup OrderedTermBase
Andreas Müller
02:17 PM Revision 1887ea68 (cdmlib): Unignore GBIF Test
Andreas Müller
02:15 PM Revision b3c0ff0a (cdmlib): Fix failing test for syn. sec. (#5902) and clean up a bit
Andreas Müller
01:59 PM Revision 100e8ed6 (cdmlib-apps): Update cdmlib version
Patrick Plitzner
01:51 PM Revision 41d514e3 (taxeditor): i18n for changing password #3102
Patrick Plitzner
01:51 PM Revision 144153b3 (taxeditor): Trim code #3102
Patrick Plitzner
01:51 PM Revision ab81561c (taxeditor): Add menu entry for password dialog to main menu #3102
Patrick Plitzner
01:51 PM Revision 8f7bda11 (taxeditor): Trim code #3102
Patrick Plitzner
01:47 PM Revision cf90f197 (taxeditor): new NomenclaturalPersonAuthorSelectionDialog
Katja Luther
01:45 PM Revision e109fb7a (cdmlib): Use syn. sec. instead of sec. for synonym sec references #5902
Andreas Müller
01:30 PM Revision ceee3276 (taxeditor): minor
Katja Luther
01:00 PM Revision 8f5ccc1e (taxeditor): add nomenclatural author search for team members
Katja Luther
11:47 AM Revision 2016e6e8 (taxeditor): Fix i18n #5146
Patrick Plitzner
11:39 AM feature request #4294: order of map legend entries conforms to term order
Priority increase to have a look to the ticket if time is left until version 1.0 of the portal
Create new ticket fo...
Andreas Müller
11:19 AM Revision 3ccceecb (taxeditor): German I18n for RemoteLoginDialog #5146
Patrick Plitzner
10:51 AM bug #3788: sort order of search results broken in free-text taxon search
Please test if still an open issue
Andreas Müller
10:50 AM task #4978: Further performance improvement of portal/taxon/{uuid}/media
For E+M we could choose a solution where we completely disable all media related functions in the portal and thus sup... Andreas Kohlbecker
10:35 AM Revision ad6b62ca (cdmlib-apps): Fix ClassCastException, improve taxon name check, fix rank evaluation
#5448 Patrick Plitzner
10:34 AM Revision 271ec193 (taxeditor): I18n for RemoteLoginDialog #5146
Patrick Plitzner
10:31 AM Revision 6e842c77 (cdm-dataportal): Fix typo in function name #5890
Patrick Plitzner
10:20 AM Revision 6a70366c (taxeditor): Fix typo
Patrick Plitzner
08:37 AM Revision 5d53f076 (taxeditor): Refactor identifier section classes #5898
- add abstract identifier section to support IdentifiableEntities and
DerivedUnitFacades
Patrick Plitzner

06/20/2016

06:25 PM Revision 7e65b368 (taxeditor): Add identifer section to supplemental data view #5898
Patrick Plitzner
05:08 PM Revision b2ce7834 (cdmlib-apps): Update to mexico import #5822 / #5892
Andreas Müller
03:29 PM feature request #5890 (Resolved): Implement auto-suggest for data portal
Implemented auto suggest based on TaxonListController.doSearch() with r28412
Patrick Plitzner
03:28 PM Revision 93ae67cc (cdm-dataportal): Implemented auto suggest for taxon search in data portal #5890
Patrick Plitzner
01:45 PM Revision 15e79265 (cdm-vaadin): Fix test (There are 29 relation types now)
Patrick Plitzner
01:16 PM Revision 6bd0f9a3 (cdmlib): Add "ined." as nomenclatural status #5896
Andreas Müller
11:56 AM Revision 46b49536 (cdmlib): Add taxon relationship types "unclear" and "not yet worked on" #5895
Andreas Müller
10:48 AM Revision 766713c7 (cdmlib-apps): Import synonyms of other classifications #5448
Patrick Plitzner
10:48 AM Revision e2cf0d65 (cdmlib-apps): Set sec reference for all taxa #5448
Patrick Plitzner

06/17/2016

11:47 PM Revision 4066cdd4 (cdmlib-apps): minor
Andreas Müller
11:47 PM Revision 11b06c28 (cdmlib-apps): First version of Mexico import #5822
Andreas Müller
05:11 PM task #5083: Alternative image viewer for dataportal
Replying to [[comment2|a.kohlbecker]]:
> To all
>
> please test both viewers with mobile devices. Are both suitab...
Andreas Kohlbecker
03:07 PM Revision 842835ee (cdmlib-apps): improve fauna europaea author import
Katja Luther
02:57 PM Revision 757377b5 (taxeditor): fix concurrentModificationException
Katja Luther
01:02 PM Revision f9540b36 (cdmlib): fix getUUIDAndTitleCache for references
Katja Luther
09:28 AM Revision feff51af (taxeditor): fix compile errros in classification service
Andreas Müller

06/16/2016

05:49 PM Revision fab2c158 (cdm-dataportal): fixing problem with appenden phrases in case of secreference being NULL
Andreas Kohlbecker
04:58 PM feature request #4366: Transmissionengine Distribution: implement rules for source references
this is an important contribution to the version:"PESI ready for EU-BON"
Andreas Kohlbecker
04:38 PM feature request #5882: option (as new default) to show full citation of accepted name below taxon page title
Replying to [[comment2|a.mueller]]:
> What about those portals not using tabs. Do they also need to have the fully r...
Andreas Kohlbecker
04:10 PM Revision 133c6e1e (cdmlib): #5536 avoiding LIE
Andreas Kohlbecker
03:50 PM Revision b1b56d64 (cdm-dataportal): adapting test run script to changes in debian packages : iceweasel is now firefox-esr
Andreas Kohlbecker
02:19 PM Revision 54f644bf (taxeditor): fix missing method in transient class
Katja Luther
01:04 PM Revision 6ecf3322 (taxeditor): fix #5363
Katja Luther
11:39 AM Revision de5abb9d (taxeditor): documentation
Katja Luther
12:28 AM Revision 183973c8 (cdmlib): #5852 dao, service and controler for taxonNode sibling retrieval
Andreas Kohlbecker
12:27 AM Revision 0af3ce28 (cdm-dataportal): #5887 #5852 classification breadcrumbs navigation implemented
Andreas Kohlbecker

06/15/2016

06:48 PM Revision 5c6cfa03 (cdmlib): Fix Gbif test
Andreas Müller
06:28 PM Revision e2d1e669 (cdmlib): tmp ignore gbif test
Andreas Müller
05:30 PM Revision af7b78c4 (cdmlib): Move E+M condensed string test
Andreas Müller
05:30 PM Revision 151d5976 (cdmlib): Fix failing test for Euro+Med condensed string
Andreas Müller
05:30 PM Revision ebb64431 (cdmlib): Fix NPE for distributions without area in composer
Andreas Müller
01:13 PM feature request #5891 (Closed): Taxon appended phrase should not allow empty string
Currently, when deleting the appended phrase field in taxon an empty string is stored in the database. Null should be... Andreas Müller
10:31 AM feature request #5890 (New): Implement auto-suggest for data portal
This could be useful for
* taxon search
* taxon/classification filter for CSV export
* ...
Drupal has a...
Patrick Plitzner

06/14/2016

02:51 PM Revision e4939695 (cdm-dataportal): #5852 classification breadcrumbs working on mobile devices (android ffirefox)
Andreas Kohlbecker
02:47 PM Revision ae79876f (cdmlib): Revert "fix getTaxonUUIDAndTitleCacheForClassification"
This reverts commit 65149714aee38dad433405eb78195ac1ef5c4da3. Katja Luther
02:44 PM Revision a6035e28 (cdmlib): #5536
Katja Luther
02:44 PM Revision 65149714 (cdmlib): fix getTaxonUUIDAndTitleCacheForClassification
Katja Luther
02:37 PM Revision eda85815 (cdmlib): Fix sorting problem for subareas in CubaCondensedDistribution and refactor the whole class #5682
Andreas Müller
02:33 PM Revision 1438fa1b (taxeditor): #5536
Katja Luther
01:25 PM bug #5888 (Closed): Deleting factual data does not work (dirty flag not set)
1. Open any taxon
1. Add any description element
1. Save
1. Delete the element
1. The dirty flag is not s...
Patrick Plitzner
11:44 AM Revision 7e55a0c5 (taxeditor): Performance tweak for specimen editor
- Avoid loading too many specimens in the specimen editor
- delay the selection too avoid double loading
Patrick Plitzner
11:44 AM Revision 64aa3373 (taxeditor): Sort root entities in specimen editor #5797
Patrick Plitzner
11:38 AM Revision 23b1c77b (taxeditor): Saving files before refreshing line endings
Patrick Plitzner
10:21 AM Revision 28a495a8 (cdm-dataportal): #5852 hide the children also on clicks out site of the list (for mobile devices)
Andreas Kohlbecker
10:12 AM Revision 614de592 (cdm-dataportal): #5887 bugfix for 'no rank limit' case
Andreas Kohlbecker
09:41 AM Revision e3235962 (cdm-dataportal): #5852 classification breadcrumbs childlist adapts to windows viewport
Andreas Kohlbecker

06/13/2016

10:20 PM Revision a112e90b (cdmlib): fixing version of xml-apis dependency
Andreas Kohlbecker
07:29 PM Revision 4d00f3a5 (cdm-vaadin): Optimize taxon node container #5458
Patrick Plitzner
05:02 PM Revision c58ebc46 (cdmlib): refactoring taxonNode controllers - return dtos from the service layer, support for #5887
Andreas Kohlbecker
05:02 PM Revision 32ba7109 (cdmlib): refactoring taxonNode controllers - return dtos from the service layer, support for #5887
Andreas Kohlbecker
03:40 PM Revision 38da4e54 (cdm-dataportal): #5887 root nodes available in classification breadcrumbs
Andreas Kohlbecker
01:36 PM Revision 97f1ee0f (cdmlib): #5536 centralized handling of NULL removal related to HHH-9751 - test
Andreas Kohlbecker
01:30 PM Revision 23e98ce3 (cdmlib): #5536 centralized handling of NULL removal related to HHH-9751
Andreas Kohlbecker
01:12 PM bug #5885: classification.rootNode has a lot of NULL children
this is potentially related to #5681
Andreas Kohlbecker
12:54 PM Revision 5940cf36 (taxeditor): Fix "Show Details" menu in name editor #5880
Patrick Plitzner
12:26 PM Revision d1dfc43d (taxeditor): i18n
Patrick Plitzner
10:58 AM Revision 74cce0ff (cdm-vaadin): Remove unused init strategy properties #54
Patrick Plitzner
10:58 AM Revision 0fe2112f (cdm-vaadin): Implement taxon node container to be used in selection view and settings
window #5458 Patrick Plitzner
10:58 AM Revision 5b5a7e10 (cdm-vaadin): Refactored setting window to work on taxon nodes #5458
Patrick Plitzner

06/12/2016

07:38 AM Revision 827bea53 (taxeditor): fix selection dialog
Katja Luther

06/10/2016

09:55 PM Revision 1d48c1fb (taxeditor): Fix wildcard issue for taxon search in TaxonNodeSelectionDialog
Andreas Müller
07:42 PM Revision 9383e254 (cdmlib): Try to fix pattern issue in taxon uuidAndTitleCache search
Andreas Müller
06:58 PM Revision 57f064a1 (cdmlib): Simplify taxonDao
Andreas Müller
06:28 PM feature request #5882: option (as new default) to show full citation of accepted name below taxon page title
What about those portals not using tabs. Do they also need to have the fully referenced accepted name repeated?
Andreas Müller
05:49 PM Revision 41687e8a (cdm-webapp): fixing project version to 4.2.0-SNAPSHOT, was broken after HFX merge back
Andreas Kohlbecker
05:33 PM bug #5885 (Worksforme): classification.rootNode has a lot of NULL children
observed with taxonNode/139e7314-dd19-4286-a01d-8cc94ef77a09/childNodes.json for Fauna Europeae
The TaxonNode.ge...
Andreas Kohlbecker
05:23 PM Revision 8497c5f5 (cdmlib): refactoring NodeSortMode
Andreas Kohlbecker
04:20 PM Revision 0ceed233 (taxeditor): Revert some changes to allow compilation. Needs to be fixed ASAP
Andreas Müller
04:16 PM Revision 6aa1e65d (taxeditor): Adapt all transient services to latest API changes
Andreas Müller
03:15 PM Revision 1a3159d5 (cdmlib): Fix bug in TaxonDaoHibernateImpl
Andreas Müller
02:19 PM Revision 7602050a (taxeditor): add new class CdmFilteredSelectionDialog
Katja Luther
02:19 PM Revision 7efbd7cf (taxeditor): use the CdmFilteredSelectionDialog
Katja Luther
02:17 PM Revision 46be327b (cdmlib): minor
Katja Luther
02:12 PM Revision 8207214b (cdmlib): minor
Katja Luther
02:12 PM Revision c51ef083 (cdmlib): add limit and pattern to the uuid and titlecache methods
Katja Luther
02:12 PM Revision 001595b1 (cdmlib): add limit and pattern to getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification
Katja Luther
11:19 AM Revision d5f29731 (cdm-dataportal): #5883 fixing map baselayer config for the dafault case
Andreas Kohlbecker
10:52 AM Revision a5ab2641 (cdm-dataportal): #5883 fixing map baselayer config for the dafault case
Andreas Kohlbecker
10:33 AM Revision 8e8eee88 (cdmlib): Fix botanical name parsing species with infrageneric epithet #5881
Andreas Müller
10:26 AM Revision 600e1f54 (cdm-dataportal): removing outdated variable setting from install profile
Andreas Kohlbecker
09:20 AM Revision a6a6cca6 (taxeditor): Fix empty first classification reference issue
Andreas Müller

06/09/2016

09:10 PM Revision 751c610c (taxeditor): fix save of checklist editor, fix show rank preference
Katja Luther
04:43 PM Revision ecdae9f5 (cdm-dataportal): using vmap0 from proxy as default also for updates
Andreas Kohlbecker
04:17 PM Revision 5cef0b6d (cdm-dataportal): using mapproxy_vmap0 as default map layer
Andreas Kohlbecker
03:57 PM feature request #5882: option (as new default) to show full citation of accepted name below taxon page title
it is possible to automatically switch between the two displaymodes for botany and zoology?
Andreas Kohlbecker
03:50 PM feature request #5882 (New): option (as new default) to show full citation of accepted name below taxon page title
Walter wrote:
Bei wissenschaftlichen Portalen... (in der Botanik) ... ist es der Normalfall, dass man auf der Ta...
Andreas Kohlbecker
03:39 PM Revision 8163495e (cdm-dataportal): Renaming variable taxontree_ranklimit to cdm_taxontree_ranklimit
Andreas Kohlbecker
03:28 PM Revision 17d56bdf (cdmlib): Adding test for formatting species with infrageneric epi #5881
Andreas Müller
03:00 PM Revision 74bd19b1 (cdmlib): Implement parser for parsing species with infrageneric epithet #5881
Andreas Müller
02:19 PM Revision b617cc44 (cdmlib): Clean up
Andreas Müller
02:14 PM Revision 7c6896ae (taxeditor): in details view: add infrageneric epithet to all names lower than genus
Katja Luther
12:55 PM Revision 9e489b29 (cdm-dataportal): enabling the admin toolbar per default
Andreas Kohlbecker
12:54 PM Revision aaa81689 (cdm-dataportal): no rank limit as default to avoid performance problems
Andreas Kohlbecker
12:53 PM Revision f5ccb5a3 (cdm-dataportal): deleting unused js file
Andreas Kohlbecker
10:58 AM Revision a5b15eef (taxeditor): further development of the checklist editor
Katja Luther

06/08/2016

05:14 PM Revision 28d45dc7 (cdmlib): Fix NPE in TermIdInVocabularyComparator
Andreas Müller
04:29 PM Revision 5e0fb4cb (cdm-vaadin): Fix compile bug in vaadin
Andreas Müller
04:22 PM Revision ca4ad1c9 (taxeditor): add the preference show only ID in Vocabulary in checklist e
Katja Luther
04:01 PM Revision e598b1c7 (taxeditor): changes to fix the checklist editor
Katja Luther
03:55 PM Revision 0e6281ce (cdmlib): add TermIdInVocabularyComparator
Katja Luther
03:20 PM feature request #5875 (Closed): Add isDefault flag to DescriptionBase
In simple views that do not show the full description hierarchie (item - descriptionBase - DescriptionElementBase/Fea... Andreas Müller
02:56 PM bug #5428: Error handling for local managed server needs to be improved
We need to check if this is all covered by #5812 and #5846. If yes, this ticket can be closed as a duplicate.
Andreas Müller
02:55 PM Revision d5a5ee56 (cdm-vaadin): Show classifications first in selection box #5458
Patrick Plitzner
02:54 PM Revision 49d7537a (cdm-vaadin): Renaming #5458
Patrick Plitzner
02:54 PM Revision 90d7f315 (cdm-vaadin): Fix label of selection box #5458
Patrick Plitzner
02:37 PM Revision 18754eca (cdm-vaadin): Only allow taxa >= species in selection view #5458
Patrick Plitzner
02:23 PM Revision 1e201891 (cdm-vaadin): Renaming #5458
Patrick Plitzner
02:20 PM Revision e3f9b0ed (cdm-vaadin): Show list of taxon nodes in selection view #5458
Patrick Plitzner
02:05 PM Revision e0787689 (cdm-vaadin): Refactor presenter to work on a list of taxon nodes #5458
Patrick Plitzner
02:05 PM Revision eda79691 (cdm-vaadin): Refactor SQL query to work on a list of taxon nodes #5458
Patrick Plitzner
01:06 PM feature request #5873 (In Progress): Implement rights&roles for TaxEditor distribution editor
The Checklist Editor in the TaxEditor opens all taxa of a subtree and allows editing of distributions.
This requ...
Andreas Müller
11:17 AM bug #5870 (Closed): NPE when trying to open a synonym (or taxon) that has been deleted
How to create:
* Search for a synonym that exists
* Go to the NameEditor or BulkEditor and delete the synonym...
Andreas Müller

06/07/2016

10:12 AM Revision 32e6766e (taxeditor): add original publication year to simple details view
Katja Luther
10:10 AM Revision 50ddf661 (taxeditor): minor
Katja Luther
10:10 AM Revision 071604f0 (taxeditor): fix NPE in checklist editor
Katja Luther

06/06/2016

02:12 PM Revision 21a93769 (taxeditor): minor
Katja Luther
01:05 PM Revision c7a160ba (taxeditor): add publication year to zoological simple details view
Katja Luther
12:55 PM Revision 505368e5 (taxeditor): add simple view preference to the general preferences page
Katja Luther
10:48 AM Revision fcbc9d3a (taxeditor): catch NPE if toggleable cache is null
Katja Luther
10:09 AM Revision 41983a95 (cdmlib): #5858 adding missing join fetch in AutoPropertyInitializer
Andreas Kohlbecker
10:05 AM bug #5868 (Feedback): re-establish support for wildcard at start of query string (includes the query string '*' )
Norbert wrote:
Eine Frage noch zur * wildcard: warum kann ich jetzt nicht mehr bei der erweiterten Taxon-Search...
Andreas Kohlbecker
09:44 AM bug #5775 (Resolved): Advanced Search AreaFilter: areas tree incomplete
done by dc66315 r28264 : important fix in cdm_ws_fetch_all method (was only returning the last page)
Andreas Kohlbecker
 

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