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From 11/10/2015 to 12/09/2015

12/09/2015

06:31 PM Revision 250453cf (taxeditor): Generalize extension point for opening object in taxeditor
Patrick Plitzner
05:22 PM Revision c70a7f0f (cdmlib): #4716 reduicing clutter in the lucene index and solving performance problems which probably fixes #4277 and #3663
Andreas Kohlbecker
04:40 PM Revision b24e806d (cdm-dataportal): removing intendation of bibliography content
Andreas Kohlbecker
04:34 PM Revision 4c3bc9b3 (taxeditor): Fix parent pom version number
Patrick Plitzner
04:32 PM Revision 4c50bd29 (taxeditor): Add pom.xml to new jre feature
Patrick Plitzner
04:28 PM Revision 846d38f0 (taxeditor): Add new project to parent pom
- Removed "qualifier" from jre project Patrick Plitzner
04:24 PM Revision 2866216e (taxeditor): Set qualifier to jre feature
Patrick Plitzner
04:16 PM Revision ab8154dd (taxeditor): Set version number of jre feature
Patrick Plitzner
04:03 PM Revision a703c6e9 (taxeditor): Bundle JRE in new feature
Patrick Plitzner
03:57 PM Revision 5da4ac56 (taxeditor): Initial import of jre feature
Patrick Plitzner
02:30 PM bug #5430 (In Progress): P2 update of Taxonomic Editor bundled with JRE does not work
Patrick Plitzner
12:42 PM Revision 72682d6e (taxeditor): fix #4940
Katja Luther
12:31 PM Revision 28cefe56 (cdmlib-apps): minor
Katja Luther
12:27 PM Revision 50818ab7 (cdmlib-apps): adapt the import classes to the new return type ImportResult
Katja Luther
11:19 AM Revision 05048d47 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
11:17 AM Revision 4bdefadf (taxeditor): fix #5221
Katja Luther
10:50 AM Revision 599261fd (taxeditor): Add scope restrictions to PolytomousKey details view #5280
Patrick Plitzner
08:59 AM Revision 1d716a84 (taxeditor): Generalize term service method listByTermType()
Patrick Plitzner
08:59 AM Revision 740b2830 (cdmlib): Generalize term service method listByTermType()
Patrick Plitzner

12/08/2015

06:37 PM Revision ec8e146e (taxeditor): Remove colon from EntitySelectionElement label #5265
Patrick Plitzner
05:08 PM task #5244 (Closed): [DISCUSS] How should specimens be created and edited?
This is fixed with the implementation of the unified derivative editor
Patrick Plitzner
10:36 AM Revision e214b66c (taxeditor): Set all meta data to null/zero when uri is not resolvable #5312
Patrick Plitzner
08:05 AM Revision 530a7656 (taxeditor): Add status bar info for hierarchies found
Patrick Plitzner

12/07/2015

06:19 PM Revision 95f14149 (taxeditor): Set image meta data in simple media view
Patrick Plitzner
06:03 PM Revision a0af0095 (taxeditor): Move getService to CdmStore
Patrick Plitzner
04:56 PM Revision 70baf07a (taxeditor): Add type specimen icon
Patrick Plitzner
04:19 PM Revision b9c5a9df (taxeditor): Refactored image loading
- fix some NPEs Patrick Plitzner
03:25 PM Revision 98886159 (taxeditor): Add type specimen icon to derivate editor
Patrick Plitzner
03:25 PM Revision 0fc5c09c (taxeditor): Fix possible NPE
Patrick Plitzner
02:31 PM Revision 9e56f862 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
Patrick Plitzner
02:30 PM Revision 78839371 (taxeditor): Avoid persisting data when hitting cancel in EditFromSelectionWizard
#2645
- create new entitySession for every wizard
- merge for OK, dispose for Cancel
Patrick Plitzner
02:23 PM Revision 7bc3c044 (taxeditor): Remove AuthorHelper which used to automatically convert Persons to Teams
Patrick Plitzner
01:31 PM Revision 4f31577f (cdmlib): #4761 performance improvent of massindexer by using new hibernate 5 massindexer, speedup by 3x
Andreas Kohlbecker
01:31 PM Revision 3adfa9a9 (cdmlib): #4761 performance improvent of massindexer by using new hibernate 5 massindexer, speedup by 3x
Andreas Kohlbecker
09:40 AM Revision 8d35d957 (cdmlib): #4761 removing @Indexed from abstract base classes since hibernate now fully supports polymorph class hierarchies
Andreas Kohlbecker

12/04/2015

06:01 PM Revision 46829a91 (cdmlib): #4761 avoiding deprecations in highlighter api
Andreas Kohlbecker
06:01 PM Revision 96d3c40f (cdmlib): #4761 updating means to obtain the IndexManager to new hibernate search api and extending according test
Andreas Kohlbecker
06:01 PM Revision 1d2c42b2 (cdmlib): #4761 TopDocs adapting to removed IndexSearcher.setDefaultFieldSortScoring(boolean, boolean) method
Andreas Kohlbecker
06:01 PM Revision 57ea8a3a (cdmlib): #4761 TopDocs now supports maxScore, so TopGroupsWithMaxScore has become obsolete
Andreas Kohlbecker
06:01 PM Revision 1432e66e (cdmlib): #4761 removing @Field annotation from CdmBase.id which has become obsolete
Andreas Kohlbecker
06:00 PM Revision c9aa51a1 (cdmlib): #4761 correcting usage of new paramaters joinQuery parameters ScoreMode and multipleValuesPerDocument
Andreas Kohlbecker
05:59 PM Revision a636f1e2 (cdmlib): adding note with link to the cdmlib-remote-webapp configuration and bootstrapping wiki page
Andreas Kohlbecker
05:59 PM Revision 00bea758 (cdmlib): #4761 fixing broken area filter join query, by circumventing a bug in lucene LUCENE-4824 (numeric fields not supported in join queries)
Andreas Kohlbecker
04:38 PM Revision 997a1522 (cdmlib-apps): Update cdmlib-app poms to latest version
Andreas Müller
04:33 PM Revision f22020bf (cdmlib-apps): Revert "Minor"
This reverts commit 0698ba772c2436c50ee7a27d147d3842fb6aa7e7. Andreas Müller
04:30 PM Revision 0698ba77 (cdmlib-apps): Minor
Andreas Müller
12:14 PM Revision 406e50c6 (cdmlib): adding note with link to the cdmlib-remote-webapp configuration and bootstrapping wiki page
Andreas Kohlbecker
12:08 PM Revision a74e40b8 (cdmlib): #5423 fixing broken area filter join query, by circumventing a bug in lucene LUCENE-4824 (numeric fields not supported in join queries)
Andreas Kohlbecker

12/03/2015

11:36 AM Revision 74cf0246 (taxeditor): Fix product version for jre product definition
Cherian Mathew
10:48 AM Revision 928db13c (cdmlib): #4716 fixing proplems with testdata by making use of the CleanSweepInsertLoadStrategy.class
Andreas Kohlbecker
10:31 AM Revision e04d3588 (taxeditor): fix not ordered terms #4821
Katja Luther
10:25 AM bug #4821: Changing order of terms not possible
the removing of the term in ordered vocabularies are now fixed. r26743
and for the not ordered terms r26744
Katja Luther
10:24 AM Revision 9f402ddf (taxeditor): fix #4821
Katja Luther
09:47 AM Revision 9550f4b4 (cdmlib): #4716 using BooelanQuery added with Occur.FILTER instead of deprecated search method
Andreas Kohlbecker

12/02/2015

07:27 PM bug #5430: P2 update of Taxonomic Editor bundled with JRE does not work
A possible solution could be a new feature plugin in the editor (let's say eu.etaxonomy.taxeditor.feature.jre) and i... Cherian Mathew
07:21 PM bug #5430: P2 update of Taxonomic Editor bundled with JRE does not work
The initial problem was due to the fact that the jre product was not uploaded to the update site. But after adding th... Cherian Mathew
07:15 PM bug #5430 (New): P2 update of Taxonomic Editor bundled with JRE does not work
Trying to update the JRE bundled fails with no updates found.
Related tickets: #4452, #5061
When finished upd...
Cherian Mathew
06:04 PM Revision f6b282fc (cdmlib): #4716 removing deprecated usage of new BooleanQuery, using BooleanQuery.Builder instead
Andreas Kohlbecker
05:40 PM Revision 37f997b9 (taxeditor): Remove unused entity cloning
Patrick Plitzner
04:43 PM Revision 2a5361d0 (cdmlib): index creation without errors, most lucene search test working again
- using TextField instead of StringField to enable tokenization for some fields
- @IndexedEmbedded(includeEmbeddedO...
Andreas Kohlbecker
04:14 PM Revision 1124c268 (cdm-vaadin): Correct launch config
Cherian Mathew
01:01 PM Revision bf2387cc (cdm-dataportal): #5423 fixing wrongly formatted taxon url
Andreas Kohlbecker
11:57 AM Revision 7f0e1f4e (cdm-dataportal): #5426 updating GBIF service Uri
Andreas Kohlbecker
11:53 AM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
Patrick, could you have a look on this.
Andreas Müller
11:50 AM bug #4821: Changing order of terms not possible
As Cherian won't have time to work on this I switch owner
Andreas Müller
11:42 AM bug #5428 (New): Error handling for local managed server needs to be improved
Currently the error messages are not giving any useful information.
Jetty API offers a Callback which allows acc...
Andreas Müller
11:40 AM bug #5250: Derivate search is slow
To improve the performance the following has been done:
- I implemented the new formatter framework that provides ...
Patrick Plitzner
11:20 AM Revision 7b9bf97d (cdmlib-apps): delete no data term creation and referencing code
U-BGBM\k.luther
11:19 AM task #5427 (New): implement automatic tests for all external links in the ext_links module
This could be implemented as phpUnit test
Andreas Kohlbecker
11:09 AM Revision a41bd5e3 (taxeditor): Fix session problem when creating field unit for a taxon
Patrick Plitzner
11:09 AM Revision 8bdc4275 (taxeditor): Refactoring type designation gathering according to model change
Patrick Plitzner
11:09 AM Revision 0847fd74 (taxeditor): Tweak performance for typeDesignation cache in label provider
Patrick Plitzner
11:09 AM Revision ddd2da06 (taxeditor): Fix refresh problem when creating a FieldUnit with no previous viewer
content Patrick Plitzner
11:09 AM Revision b310b0b0 (taxeditor): Fix possible NPE
Patrick Plitzner
11:09 AM Revision 7d3bda1d (taxeditor): Remove/Refactor System.out statements
Patrick Plitzner
11:09 AM Revision 86346121 (taxeditor): Set format for DerivateLabelProvider
Patrick Plitzner
11:09 AM Revision c06ca2f5 (taxeditor): Refresh only label of the element that has changed
Patrick Plitzner
11:09 AM Revision a7e3d431 (taxeditor): Use formatter framework in DerivateLabelProvider
Patrick Plitzner
11:08 AM Revision d496803d (cdmlib): Add uuid based method for getAllChildDerivatives()
Patrick Plitzner
11:08 AM Revision 95964a96 (cdmlib): Specified method signature as type designations are only available for
DerivedUnits Patrick Plitzner
11:08 AM Revision 6fd1aa50 (cdmlib): Add missing formatter to factory method
- Fix possible NPEs Patrick Plitzner
11:08 AM Revision 0b0a8928 (cdmlib): Implement FormatKeys for all currently used occurrences parameters
Patrick Plitzner
11:08 AM Revision 64f24974 (cdmlib): Implement first take on formatter framework
A formatter provides a string representation of an object based on the
selected FormatKeys
Patrick Plitzner
10:46 AM Revision 0c8759ce (cdmlib-apps): minor Fauna Eu changes
U-BGBM\k.luther

12/01/2015

05:20 PM Revision e3970b49 (taxeditor): #5420 Add check to dispose input if duplicate editor is already open
Cherian Mathew
04:03 PM Revision b6d5d6a6 (taxeditor): #5277 Correct session intialisation and default feature tree caching
Cherian Mathew
03:30 PM task #5418 (New): optimize lucene index if possible
we potentially can optimize the size of the lucene index which also would effect indexing time and resource consumpti... Andreas Kohlbecker
02:40 PM Revision fed20661 (cdmlib): split test for moveDescriptionElements into two tests, on or the correct deletion and the other one for resaving the taxonDescription
Katja Luther
01:54 PM Revision 6757ea6d (cdmlib): changes for #4960 and #4959
Katja Luther
12:54 PM Revision 112b48ef (cdmlib): #5415 additional hibernate config file for specific integration test phases
Andreas Kohlbecker
11:47 AM bug #5417 (Worksforme): Search not working correctly in Bulk Editor
From A.Mueller #5267
When I edit a specimen it often does not show up in the bulk editor search anymore afterwor...
Cherian Mathew

11/30/2015

02:48 PM Revision 3e01d1be (cdmlib): Show complete stacktrace in import report
Patrick Plitzner
02:25 PM Revision b00a67e8 (cdmlib): Fix counting of specimens created in ABCD import report
Patrick Plitzner
02:18 PM bug #5250: Derivate search is slow
Replying to [[comment9|p.plitzner]]:
> Replying to [[comment7|c.mathew]]:
> Concerning the search performance: Sear...
Cherian Mathew
02:12 PM bug #5250: Derivate search is slow
Replying to [[comment9|p.plitzner]]:
> Replying to [[comment7|c.mathew]]:
> The type designations are only retrieve...
Cherian Mathew
11:55 AM bug #5250: Derivate search is slow
Replying to [[comment7|c.mathew]]:
> Another main cause of performance issues is the
>
> ...
Patrick Plitzner
01:11 PM Revision 889c74b7 (cdm-dataportal): #5412 updating block content
Andreas Kohlbecker
01:06 PM Revision 11c36658 (cdm-dataportal): #5412 adding powered_by_edit icon
Andreas Kohlbecker
12:39 PM Revision 79997ad8 (cdmlib-apps): Fauna Europaea import changes
U-BGBM\k.luther
10:32 AM Revision 9447b618 (taxeditor): Fix incorrect merge
Patrick Plitzner
10:29 AM Revision 78d55600 (taxeditor): Removed unused list
Patrick Plitzner
10:27 AM Revision fc82bdef (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into
develop Patrick Plitzner
10:25 AM Revision 40b943c7 (cdmlib): Add convenience service methods to occurrence service
Patrick Plitzner
10:23 AM Revision 44ffca34 (cdmlib): Parse spatial data for gathering event in ABCD import #5169
Patrick Plitzner
07:01 AM Revision fa9bf282 (taxeditor): list specimen-taxon associations separately in specimen details view
- remove determination info from derivative label Patrick Plitzner
07:00 AM Revision 56a58ffb (taxeditor): Add missing transient services
Patrick Plitzner

11/29/2015

11:04 PM Revision b191cd0f (cdmlib-apps): Vernacular names import fauna europaea
Katja Luther
10:32 PM Revision 920872f8 (cdmlib-apps): merge of conflicted FaunaEu transformer
U-BGBM\k.luther
10:10 PM Revision 520b89c5 (cdmlib-apps): merged FaunaEu transformer
U-BGBM\k.luther

11/27/2015

05:49 PM Revision ab0430b9 (cdmlib): #4716 IndexDocValue related issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful - commit of missing file
Andreas Kohlbecker
05:41 PM Revision c05e5f35 (cdmlib-apps): merged FaunaEu transformer
U-BGBM\k.luther
05:21 PM Revision 6acc30f5 (cdmlib-apps): Add doc for user defined FauEu area import
Andreas Müller
05:00 PM Revision a399b702 (cdmlib-apps): changes for fauna europaea import
U-BGBM\k.luther
04:47 PM Revision 7c19e84a (cdmlib-apps): Make FauEU area YU a user defined area #5409
Andreas Müller
04:30 PM Revision 8096b11a (cdmlib): #4716 IndexDocValue relates issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful
Andreas Kohlbecker
04:27 PM Revision 4a11928f (cdmlib-apps): Fix FauEu mapping for Baleares #5407
Andreas Müller
03:53 PM feature request #5356: Handle exceptions which require reconnect
This can be added to the exception handling in eu.etaxonomy.taxeditor.ApplicationWorkbenchAdvisor.
Cherian Mathew
11:48 AM Revision 4ed38c9b (taxeditor): #5207 Add validation of credentials on target server before starting application context
Cherian Mathew
09:51 AM Revision f5f19dc6 (cdmlib): TaxonServiceSearchTest: assertions no longer unnessecarily doing object comparision, relying on auto boxing is better!
Andreas Kohlbecker

11/26/2015

05:44 PM feature request #5209 (Resolved): Improve server availability check
Cherian Mathew
05:42 PM feature request #5209 (In Progress): Improve server availability check
The two main exceptions to handle are
* RemoteConnectFailureException : for when the connection to the remote serve...
Cherian Mathew
03:19 PM Revision d6cf924b (taxeditor): Cleanup code
Cherian Mathew
03:18 PM Revision 0f8ea4a2 (taxeditor): Adds async refresh of server
Cherian Mathew
03:15 PM Revision 65e61086 (taxeditor): #5209 Beautify error messages related to connection / access to remote server
Cherian Mathew
03:04 PM bug #5211 (New): Error when creating new taxon /problem with sortindex in taxon tree
Andreas Müller
03:03 PM bug #5211 (In Progress): Error when creating new taxon /problem with sortindex in taxon tree
Andreas Müller
10:05 AM Revision e6df36cc (cdmlib): first steps to make lucene working again
Andreas Kohlbecker
10:03 AM Revision f860a925 (cdmlib): disabling unnecesary component scan
Andreas Kohlbecker
10:02 AM Revision 43e6b43d (cdmlib): #4716 fixing setup of cdmlib-remote-webapp
- swagger disabled due to https://github.com/springfox/springfox/issues/1055
- eu.etaxonomy.cdm.remote.config.Cdm...
Andreas Kohlbecker

11/25/2015

06:48 PM bug #5250 (Resolved): Derivate search is slow
Assigning for review of the performance and also to check if the other use-cases (taxon selection, etc) still work fi... Cherian Mathew
06:46 PM bug #5250: Derivate search is slow
Another main cause of performance issues is the
~~~
listTypeDesignations
~~~
call in the DerivateLabelProvider cla...
Cherian Mathew
06:42 PM bug #5250: Derivate search is slow
The main reason for the performance is the remote loading of each derivate (using its uuid) even after the entire lis... Cherian Mathew
06:33 PM Revision 6bfd2385 (taxeditor): #5250 Refactor code for improving derivate search performance
Cherian Mathew
06:31 PM Revision 335bbd17 (taxeditor): Implement new load method for uuid lists
Cherian Mathew
06:31 PM Revision fbedbcd2 (cdmlib): Add load method for uuid lists
Cherian Mathew
02:42 PM feature request #4021 (New): H2 running in Server mode
Andreas Müller
02:41 PM feature request #4021 (Feedback): H2 running in Server mode
Can't see that this is an exact duplicate for #4073. However, move it to unassigned for further discussion
Andreas Müller
02:37 PM feature request #5396 (New): User interface to create a Remote Source
split from #4193
Andreas Müller
01:57 PM feature request #4716: Other dependencies to be updated
Stacktrace for above error is:
~~~
org.hibernate.HibernateException: could not reassociate uninitialized transient ...
Andreas Müller
01:50 PM feature request #4716: Other dependencies to be updated
Hallo Katja,
nach dem dependency upgrade bekomme ich ein Problem mit der Methode DescriptionServiceImplTest.testMov...
Andreas Müller
11:18 AM Revision bd70ceb2 (cdmlib): Set Unit/Notes and Gathering/Notes in ABCD import #5168
Patrick Plitzner
07:44 AM Revision f16eafb5 (cdmlib): Import missing parameters for ggbn ABCD import
- some refactoring Patrick Plitzner

11/24/2015

05:29 PM Revision 21ce1d0d (taxeditor): Revert update handler to earlier version
Cherian Mathew
04:03 PM Revision e8081706 (cdmlib): Fix import for max elevation
Patrick Plitzner
03:55 PM Revision 088ea145 (cdmlib): #4716 temporarily making 3 fieldnames lowercase to prevent from trouble with new hibernate naming strategy, needs to be reverted later, see #5369
Andreas Kohlbecker
03:12 PM Revision 90634148 (cdmlib): Minor
Andreas Müller
03:03 PM Revision e8ce1472 (cdmlib): Upgrade from aspectj 1.7.4 to 1.8.7 #4716
Andreas Müller
03:03 PM Revision 4e79c4bf (cdmlib): Minor generics changes for TcsXmlExport
Andreas Müller
02:20 PM Revision 5bb64b9f (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
02:19 PM Revision f512d3f1 (taxeditor): add delete configurator dialog for taxa and names bulkeditor
Katja Luther
02:14 PM Revision 5830445c (cdmlib): #4716 upgrading maven jetty plugin to latest, requires java 1.8
Andreas Kohlbecker
02:02 PM Revision 6b462070 (taxeditor): Move to simpler update process
Cherian Mathew
01:42 PM Revision f4f067bc (cdmlib): add the missing files
Katja Luther
01:18 PM Revision 946bbfb5 (cdmlib): Remove spring version from remote-webapp pom #4716
Andreas Müller
12:45 PM bug #5104 (Resolved): prevent MarkerTypes from being deleted when there are Marker entities using that type
test fixed r26650
Katja Luther
12:44 PM Revision ea969fcb (cdmlib): fix the term delete test
Katja Luther
12:05 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import
split from #3509, for details see comments there
Patrick Plitzner
12:01 PM Revision c7a2c22e (taxeditor): Add repo URIs to update operation
Cherian Mathew
11:35 AM Revision 5e4f7643 (cdmlib): Update some more hibernate mapping nameings #4716 and #5369
Andreas Müller
11:15 AM Revision 1b592dc6 (taxeditor): change message if convert person 2 team is not possible #5272
Katja Luther
10:56 AM bug #5250 (In Progress): Derivate search is slow
Cherian Mathew
10:15 AM Revision d2274a1b (taxeditor): fix #4878
Katja Luther
09:44 AM Revision f4352549 (cdmlib): add LIKE to MatchMode #5391
Katja Luther
09:19 AM Revision 4043da12 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther

11/23/2015

06:14 PM Revision 7d743a99 (taxeditor): Remove eclipse env check
Cherian Mathew
05:34 PM Revision b645428a (taxeditor): Simplify update process
Cherian Mathew
05:24 PM Revision c55a96d8 (cdmlib): Move from hibernate-search to hibernate-search-orm #4716
Andreas Müller
05:23 PM Revision b2a91269 (cdmlib): #4716 upgrading spring xsd schema version to 4.0
Andreas Kohlbecker
05:07 PM Revision 763e9e67 (cdmlib): Cleanup
Cherian Mathew
05:06 PM Revision d153399a (taxeditor): Cleanup
Cherian Mathew
04:59 PM Revision a7d59765 (taxeditor): Correct update operation initialisation
Cherian Mathew
04:31 PM Revision 67fc6d9b (taxeditor): #5282 Use null session in referencing objects view
Cherian Mathew
04:29 PM Revision eedeeaee (taxeditor): #5160 Use new merge methods with uuids as parameters
Cherian Mathew
04:13 PM Revision 3e15b995 (cdmlib): Set failing DescriptionService test preliminary to ignore #4716
Andreas Müller
04:13 PM Revision a3a90b7c (cdmlib): Upgrade to hibernate 5.0.4 #4716
from 5.0.3 Andreas Müller
04:13 PM Revision 58136b31 (cdmlib): Fix upgrade issues after rebase #4716
Andreas Müller
04:13 PM Revision f5e0f43a (cdmlib): Add jta to pom to fix exception coming with hibernate 5.0.4 #4716
Andreas Müller
04:13 PM Revision eec2d79d (cdmlib): Fix issues after rebase #4716
Andreas Müller
04:13 PM Revision 975a7d74 (cdmlib): Fix compile issues after rebase #4716
Andreas Müller
04:13 PM Revision 515da9f2 (cdmlib): Add some more gitignore and comment ignore TaxonSearchTest #4716
Andreas Müller
04:13 PM Revision c5041b33 (cdmlib): Upgrading to srping 4.2.3, jodatime 2.9.1 and commons-collections 3.2.2
#4716 Andreas Müller
04:13 PM Revision b0865b1a (cdmlib): Remove dbunit dependency #4803
Andreas Müller
04:13 PM Revision 261f7549 (cdmlib): Update to hibernate 5 for cdmlib-remote and pring (no changes) #4716
Andreas Müller
04:13 PM Revision 8c34728e (cdmlib): Update to hibernate 5 for cdmlib-io #4716
Andreas Müller
04:13 PM Revision 69f17e7e (cdmlib): update gitignore
Andreas Müller
04:13 PM Revision 2638be38 (cdmlib): migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
* (except for hibernate search tests)
* including new spring-config structure
Andreas Müller
04:13 PM Revision 398bcf3e (cdmlib): Adapt cdmlib-persistence to new testing architecture #5370
Andreas Müller
04:13 PM Revision 53c8f824 (cdmlib): Add first version of cdmlib-test #5370
Andreas Müller
04:13 PM Revision 3dd6c00e (cdmlib): Upgrade to hibernate 5 with persistence tests running #4716
Andreas Müller
04:10 PM Revision b2639c6c (cdmlib): Fix all compile errors from services to remote (some only preliminary)
#4716 Andreas Müller
04:10 PM Revision c6a3dcb1 (cdmlib): Remove MultCollector class #4716
The original is now available through lucene 4.10 Andreas Müller
04:10 PM Revision 2622a38b (cdmlib): Further adapt to new jackson and new lucene version #4716
Andreas Müller
04:10 PM Revision 442f6aca (cdmlib): Hibernate, lucene and search upgradet to 4.3.11, 4.10.4 and 5.2.1 #4716
Only compiling, test not running due to leak in connection pooling for
tests
Andreas Müller
04:10 PM Revision 1f9b3225 (cdmlib): Some cleanups in hibernate user types
Andreas Müller
04:10 PM Revision 68573bd1 (cdmlib): Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702 Andreas Müller
04:10 PM Revision 21d1be03 (cdmlib): Fix bug for embeddable classes in AdvancedBeanInitializer #5383
Andreas Müller
04:10 PM Revision d49d676a (cdmlib): Fix associated specimen retrieval for name determination
- added test Patrick Plitzner
04:10 PM Revision 0fd0248b (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
Andreas Kohlbecker
04:10 PM Revision 95364eb4 (cdmlib): Added test for taxon (name) <-> specimen association
Patrick Plitzner
04:10 PM Revision a89899fb (cdmlib): fix #5341 and fixing deletion of specimen
Katja Luther
04:10 PM Revision 30a8e44b (cdmlib): removing commented testcases which are broken in spring 4 and unused in the cdm remote controllers
Andreas Kohlbecker
04:10 PM Revision ff8cf355 (cdmlib): Upgrade batik and c3p0 #4716
Andreas Müller
04:10 PM Revision 71e146f7 (cdmlib): Upgrade jaxb version and to new glassfish implementation and more spring
cleanup #4716 Andreas Müller
04:10 PM Revision 8a386b2c (cdmlib): Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702 Andreas Müller
04:02 PM Revision 8577462c (cdmlib): Reduce jena-tdl from 3.0.0. to 1.1.2 for now #4716
Andreas Müller
04:02 PM Revision 73e76701 (cdmlib): Update dependency versions for further dependencies #4716
commons-logging, commons-codec, jboss-logging, jena-tdb,
commons-beanutils, joda-time, ehcache-core, Saxon-HE,
hibern...
Andreas Müller
04:02 PM Revision e3562a7b (cdmlib): Update simple dependency versions #4716
httpcomponents, doxia, poi, jackson, slf4j, aspectjrt + weaver, wsdl4j,
guava, jaxen, xstream, xom, jtds, mysql (rema...
Andreas Müller
04:02 PM Revision a8ad5297 (cdmlib): Remove jdom from cdmlib-print pom
Andreas Müller
04:02 PM Revision 423460e5 (cdmlib): Update jdbc-driver versions #4716
Andreas Müller
04:02 PM Revision 27bb7378 (cdmlib): Upgrade hibernate3 maven plugin and ant plugin versions and dependencies
#4716 Andreas Müller
04:02 PM Revision 718b436c (cdmlib): Add spring-context to cdmlib-model
Andreas Müller
04:02 PM Revision 411b2214 (cdmlib): Change springframework to spring in persistence #4702
Andreas Müller
04:02 PM Revision cb57fc9c (cdmlib): Fix spring-jdbc dependency
Andreas Müller
04:02 PM Revision 44a80e96 (cdmlib): Add jdom2
Andreas Müller
04:02 PM Revision 629e7bc8 (cdmlib): Change from springframework to spring in parent-pom #4702
Andreas Müller
04:02 PM Revision 93c283c9 (cdmlib): Change from springframework to spring in cdmlib-io and -remote #4702
Andreas Müller
04:02 PM Revision 9542db61 (cdmlib): Remove spring-framework test dependency from cdmlib-services #4702
Andreas Müller
04:02 PM Revision 23e27cfd (cdmlib): Change springframework to spring in cdmlib-model #4702
Andreas Müller
04:01 PM Revision 2fb183d7 (cdmlib): Change springframework to spring in cdmlib-commons
Andreas Müller
03:38 PM Revision 1bb7e5ef (taxeditor): Add info dialog when no updates available
Cherian Mathew
03:21 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
Replying to [[comment6|a.kohlbecker]]:
> Just an Idea: Could this be related to the jsvc process which is starting t...
Andreas Kohlbecker
02:38 PM Revision d74e55d1 (cdmlib): #5338 Check monitor map for null key when getting value
Cherian Mathew
01:32 PM Revision cea412e7 (cdm-dataportal): fixing bug introduced by d9763fd
Andreas Kohlbecker
01:03 PM Revision b00a4a66 (taxeditor): Move update checks from P2Util to UpdateHandler
Cherian Mathew
12:08 PM Revision c77da3e3 (cdm-dataportal): updating layer data for the 'ETOPO1 Global Relief Model'
Andreas Kohlbecker
11:41 AM Revision 5006b30c (taxeditor): Generate metadata service without the authentication executor
Cherian Mathew
10:39 AM Revision d02ff6c0 (taxeditor): Revert cached services map to be local to configuration class
Cherian Mathew

11/20/2015

06:47 PM Revision 2061b426 (taxeditor): #5000 Fix typo error
Cherian Mathew
06:47 PM Revision fc09bcdb (taxeditor): #5000 Use new metadata service
Cherian Mathew
06:45 PM Revision c2cac51d (cdmlib): #5000 Add new metadata service
Cherian Mathew
02:23 PM bug #4962: improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
I think we can close this ticket since no further improvement is possible without solving #5387
Andreas Kohlbecker
02:06 PM bug #4962 (Resolved): improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
Improvements implemented:
* f36a078 [r26575 commenting performance measure print-out via Systemerr|* 256c8f8 r26574...
Andreas Kohlbecker
02:22 PM feature request #5387 (New): Completely avoid all cache strategies during read operations
The cdm make use of `CacheStrategies` in order to update titelCaches and taggedTitles of Taxa, Names, Authors, Refere... Andreas Kohlbecker
02:04 PM Revision f36a0784 (cdmlib): #4962 commenting performance measure print-out via System.err
Andreas Kohlbecker
01:52 PM Revision 256c8f84 (cdmlib): #4962 avoiding bean initialization in getChildNodesAtRank() as much as possible - performance improvement
Andreas Kohlbecker
10:49 AM feature request #4021 (Duplicate): H2 running in Server mode
duplicate of #4073
Cherian Mathew

11/19/2015

11:14 PM bug #4962: improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
results of more detailed performance measures. In the following log the time (ms) of specific parts of the whole proc... Andreas Kohlbecker
03:40 PM Revision b4503332 (cdm-dataportal): #5385 openlayers maps adapt to parent DOM element width and the map aspect ratio can be set instead of fixed width and height
Andreas Kohlbecker
11:16 AM Revision 34e5c415 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
11:15 AM Revision 07d015cb (taxeditor): fix #4878
Katja Luther
10:51 AM Revision ad401f08 (cdmlib): revert chamges in MatchMode
Katja Luther
10:44 AM Revision 6f126f71 (cdmlib): revert chamges in MatchMode
Katja Luther
10:36 AM feature request #4837: responsive layout & theme
c.ring wrote:
> modification of theme CSS for full responsiveness handed over to Tobias Gehroldt (MfN)
Caroline un...
Andreas Kohlbecker
10:14 AM Revision e97140ed (cdmlib-apps): minor
U-BGBM\k.luther
08:48 AM Revision 828f332d (cdmlib-apps): changes for vernacular names import
U-BGBM\k.luther

11/18/2015

04:10 PM Revision c1fef20a (cdm-dataportal): flexible size for list of taxa managed by experts
Andreas Kohlbecker
03:51 PM task #5384 (New): consider update to openlayers 3.x
Openlayers 3 has a lot of improvements over version 2:
* high-dpi support
* better vector rendering engine
...
Andreas Kohlbecker
03:34 PM Revision 5b5051a9 (cdm-dataportal): fixing name render template for related_taxon
Andreas Kohlbecker
03:10 PM Revision 541d252e (cdmlib): Fix typo
Patrick Plitzner
03:08 PM Revision bf90783c (cdm-dataportal): #4313 changing label
Andreas Kohlbecker
03:05 PM Revision 403ac024 (cdmlib): Extended test for specimens associations
Patrick Plitzner
03:04 PM Revision 4f10c48b (cdmlib): Remove unused parameters
Patrick Plitzner
12:25 PM Revision 572aa6d2 (cdmlib): Add test for all possible specimen associations
Patrick Plitzner
11:44 AM Revision d9763fd3 (cdm-dataportal): #4313 display of expert details complete and layout fine tuning done
Andreas Kohlbecker
11:44 AM Revision 7663cd0b (cdm-dataportal): #4313 first implementation of the taxon experts tab
Andreas Kohlbecker
10:57 AM feature request #5174: web services for experts implemented
additional changes:
* 887fec0 r26450 relationship type as additinal filter option for TaxonNodeAgentRelation servic...
Andreas Kohlbecker
10:27 AM feature request #5174: web services for experts implemented
for reviewing please take the following REST services into account:
* http://test.e-taxonomy.eu/cdmserver/fauna_euro...
Andreas Kohlbecker
10:56 AM Revision 887fec08 (cdmlib): #4313 relationship type as additinal filter option for TaxonNodeAgentRelation services
Andreas Kohlbecker

11/17/2015

06:51 PM Revision 5e251525 (taxeditor): Add determination info to DerivateLabelProvider
Patrick Plitzner
04:43 PM Revision db6dfacc (taxeditor): Add missing transient service method
Patrick Plitzner
04:34 PM Revision 76be242c (taxeditor): Simplify selectionChanged method
Patrick Plitzner
04:33 PM Revision 9de4bfe6 (taxeditor): Add icon to DerivateView context menu
Patrick Plitzner
04:32 PM Revision 550eeb6f (cdmlib): Add new service method listDerminationEvents to occurrence service which
lists all determination events that contain the given specimen Patrick Plitzner
04:32 PM Revision cc1e6737 (cdmlib): Check for names and synonymy when checking specimen determinations
Patrick Plitzner
04:32 PM Revision e6d7d39f (cdmlib): Add java doc
Patrick Plitzner
04:09 PM Revision 45a894e6 (cdmlib): Clean up BeanInitNode embeddable issues #5383
Andreas Müller
03:54 PM Revision cd02d8bd (cdmlib): Fix bug for embeddable classes in AdvancedBeanInitializer #5383
Andreas Müller
03:30 PM Revision 3aa5ea5e (taxeditor): Streamline search method due to cdmlib service changes
Patrick Plitzner
03:18 PM feature request #5174 (Resolved): web services for experts implemented
all implemented:
* b014351 [r26440 implementing full stack of methods to expose TaxonNodeAgentRelations …|* fe33102 ...
Andreas Kohlbecker
03:09 PM Revision b014351b (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations throught the AgentController with filter options
Andreas Kohlbecker
02:46 PM Revision 3dea8ed1 (cdmlib): fixing #4878
Katja Luther
01:46 PM Revision cbd1f119 (taxeditor): Add missing pluging dependency to feature.xml
Patrick Plitzner
01:32 PM Revision 22a3e273 (taxeditor): Adapt transient service to cdmlib changes
Patrick Plitzner
01:29 PM Revision 42f8ab76 (cdmlib): Fix associated specimen retrieval for name determination
- added test Patrick Plitzner
12:55 PM Revision 604df0ab (cdmlib): Fix copy&paste error
Patrick Plitzner
12:35 PM Revision 848d3f7d (cdmlib): Fix failing tests
- adapted to new return type Patrick Plitzner
11:47 AM Revision e6e5ebdc (cdmlib): Extend service methods to retrieve specimens that are determiined as a
taxon name Patrick Plitzner
10:50 AM Revision df85b8bf (cdmlib): When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations Patrick Plitzner
10:48 AM Revision fa2bd652 (cdmlib): Add javadoc
Patrick Plitzner

11/16/2015

05:13 PM Revision 279996e5 (taxeditor): Remove unused classpath entry
Patrick Plitzner
04:51 PM Revision a187717b (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
Patrick Plitzner
04:42 PM Revision 3387bfe5 (cdmlib): Remove failing legacy test
Patrick Plitzner
04:18 PM Revision 76c823c7 (taxeditor): Add toggle for "link with taxon selection" to context menu of
DerivativeEditor Patrick Plitzner
03:12 PM Revision 15202dd0 (taxeditor): Fix test environment for webapp test
Cherian Mathew
03:12 PM Revision 1c945ab8 (taxeditor): Ignore cdmlib war file
Cherian Mathew
03:11 PM Revision 7a96337f (taxeditor): #4073 Add new project for lanuching embedded jetty server using cdmlib webapp
#4073 Add jetty server dependencies
#4073 Add stop start possibility for server
#4073 Add functionality to control ...
Cherian Mathew
03:05 PM Revision eee9b39a (cdmlib): Refactored import return type from boolean to ImportResult
Patrick Plitzner
03:05 PM Revision 1ae59e40 (cdmlib): Move import report to import state super class
Patrick Plitzner
03:01 PM Revision fe33102c (cdmlib): #4313 introducing AgentPortalController
Andreas Kohlbecker
03:01 PM Revision 798120f1 (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
Andreas Kohlbecker
03:01 PM Revision 33b73396 (cdmlib): using long value for count in pager & easier access to utilty method
Andreas Kohlbecker
02:40 PM Revision a13b35df (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
02:39 PM Revision 07655893 (taxeditor): minor
Katja Luther
02:35 PM Revision f04ebb2b (taxeditor): Update eclipse compile / runtime to JavaSE-1.7
Conflicts:
eu.etaxonomy.taxeditor.application/.classpath
Cherian Mathew
02:31 PM Revision d0a4b949 (taxeditor): fixing #4808
Katja Luther
02:28 PM Revision ae1c072d (taxeditor): #4073 Add error callback for CDM Server start
Cherian Mathew
01:25 PM Revision c290a960 (cdmlib): minor
Katja Luther
01:24 PM Revision 27b69718 (cdmlib): fix merge description into another description
Katja Luther
12:49 PM Revision 42bbaccb (cdm-dataportal): Reorganize dataportal css
Patrick Plitzner
12:37 PM Revision 24b8816f (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
12:36 PM Revision c1c463d7 (taxeditor): fix move whole description to another description and adding delete configurator to bulk editor
Katja Luther
10:38 AM Revision 8f065066 (taxeditor): Move "link with taxon selection" action to main toolbar
Patrick Plitzner
09:30 AM Revision 2d885c52 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
U-BGBM\k.luther
09:30 AM Revision 7548e4de (cdmlib-apps): minor
U-BGBM\k.luther
08:11 AM Revision d8af4f9e (taxeditor): Remove report configuration from ABCD import wizard
Patrick Plitzner
08:08 AM Revision bda3782e (taxeditor): Show report text dialog after finishing import
Patrick Plitzner

11/13/2015

06:48 PM Revision 8c244d13 (taxeditor): #4073 Add webapp to editor project and fix file location issue
Cherian Mathew
05:27 PM Revision dcfe621d (taxeditor): #4073 Fix incorrect stop behaviour, Add mysql jdbc connector jar
Cherian Mathew
04:37 PM Revision 5111c428 (taxeditor): #4073 Simplify manged server ui
Cherian Mathew
03:16 PM Revision b0ca9585 (cdmlib-apps): Update app-import application contexts to work with spring-security 4
#4716 Andreas Müller
03:15 PM Revision 1542dee5 (cdmlib-apps): Import references as taxon descriptions in FauEu
* Until now they were imported as name descriptions Andreas Müller
02:34 PM Revision 32bfa802 (taxeditor): #4073 Add start / stop methods for managed server
Cherian Mathew

11/12/2015

06:51 PM Revision 7c932bae (taxeditor): #4073 Add functionality to control managed server in login dialog
Cherian Mathew
05:45 PM feature request #3742: Display altitude, distance to Ground and watersurface correctly in dataportal
display fixed by r26394 74ee6b5
Andreas Kohlbecker
05:43 PM Revision c08f7882 (cdm-dataportal): avoiding display of 'Exact location' for empty Point data
Andreas Kohlbecker
05:25 PM Revision 74ee6b54 (cdm-dataportal): #3742 displaying altitude, distance to Ground and watersurface correctly with ranges
Andreas Kohlbecker
04:36 PM Revision 5e2ad9e7 (taxeditor): #4073 Add stop start possibility for server
Cherian Mathew
03:35 PM Revision 07c6e912 (cdmlib): #2273 removing HACK: hardcoded distribution status colors for cyprus a no longer needed
Andreas Kohlbecker
03:35 PM Revision a3840b75 (cdmlib): removing obsoltete version definition in submodule pom.xml
Andreas Kohlbecker
03:19 PM Revision ea6faa96 (taxeditor): #4073 Add jetty server dependencies
Cherian Mathew
03:15 PM Revision 02b54e8c (taxeditor): Update eclipse compile / runtime to JavaSE-1.7
Cherian Mathew
11:02 AM task #5375 (In Progress): cdm-server without jsvc
jsvc is used to start the cdm-server as daemon. Jetty 8 is however no longer using jsvc it is using the [apache commo... Andreas Kohlbecker

11/11/2015

05:03 PM Revision d2ea9779 (taxeditor): Convert DerivateView to an EditorPart
Patrick Plitzner
04:45 PM feature request #4383: multiple issues with de-duplication of references in bibliography
detaching from parent ticket #4314
Andreas Kohlbecker
04:13 PM Revision 700c724c (taxeditor): #4073 Add new project for lanuching embedded jetty server using cdmlib webapp
Cherian Mathew
01:38 PM Revision 06a6dcf1 (taxeditor): Fix association creation
Patrick Plitzner
01:38 PM Revision 5403b045 (taxeditor): Remove unused class
Patrick Plitzner
11:07 AM Revision b92b3235 (taxeditor): Merge branch 'develop' into unify_derivative_views
Patrick Plitzner
10:38 AM Revision 2ae69503 (cdmlib): Add orphanRemoval to SingleReadAlignment set of Sequence #5200
Patrick Plitzner

11/10/2015

06:39 PM Revision d0e973da (taxeditor): Add flag for displaying choose action in name details view #5260
Patrick Plitzner
06:02 PM bug #5371 (Worksforme): all name parts of taxa with flag doubtful = true are displayed in italic
tested at the taxon "Crepis heterophylla" in the cichoriae production database.
The taxon which has been set dou...
Andreas Kohlbecker
05:11 PM Revision c7f2a478 (utis-core): fixing bug regarding writing the last updated timestamp and writing also a log of timestamps
Andreas Kohlbecker
04:15 PM Revision df5f4832 (taxeditor): Fix possible NPE #4850
Patrick Plitzner
03:23 PM feature request #4716 (In Progress): Other dependencies to be updated
Andreas Müller
03:20 PM Revision 8a6a41cd (taxeditor): Fix link to default handler #5155
Patrick Plitzner
02:32 PM Revision 168cc689 (taxeditor): minor
Katja Luther
12:40 PM Revision f2fdced6 (cdmlib): Add UUID delete method to occurrence service #5200
Patrick Plitzner
12:40 PM Revision e21e3b88 (taxeditor): Adapt to service changes #5200
Patrick Plitzner
12:34 PM Revision 6aa0af63 (cdmlib): fixing #5303
Katja Luther
12:30 PM Revision 1b12bb24 (cdmlib): fixing #5303
Katja Luther
11:56 AM Revision 3d8401d8 (cdmlib): Fix sequence and single read deletion #5200
- adapted tests Patrick Plitzner
11:56 AM Revision b122f530 (cdmlib): Add test for deleting SingleRead that is attached to multpile seuqences
#5200 Patrick Plitzner
11:56 AM Revision 455c5da0 (cdmlib): Set singleRead to null when removing SingleReadAlignment from sequence
to avoid "object would be re-saved" #5200 Patrick Plitzner
11:56 AM Revision b9e5fce5 (cdmlib): added DAO for SingleReads #5200
Patrick Plitzner
11:56 AM Revision c1a0b171 (cdmlib): Added test for taxon (name) <-> specimen association
Patrick Plitzner
10:34 AM Revision cf307878 (taxeditor): fixing #5319
Katja Luther
10:26 AM Revision 50569a3a (taxeditor): fixing #5319
Katja Luther
09:41 AM Revision 47ff0a08 (cdmlib): Revert "accept the change from a number to null in TimePeriod fields #5319"
This reverts commit a3960fa7c279f2aa9fafbefde098c529e269d382. Katja Luther
09:31 AM Revision c12b01cf (taxeditor): fixing #5115
Katja Luther
 

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