Activity
From 11/09/2015 to 12/08/2015
12/08/2015
- 06:37 PM Revision ec8e146e (taxeditor): Remove colon from EntitySelectionElement label #5265
- 05:08 PM task #5244 (Closed): [DISCUSS] How should specimens be created and edited?
- This is fixed with the implementation of the unified derivative editor
- 10:36 AM Revision e214b66c (taxeditor): Set all meta data to null/zero when uri is not resolvable #5312
- 08:05 AM Revision 530a7656 (taxeditor): Add status bar info for hierarchies found
12/07/2015
- 06:19 PM Revision 95f14149 (taxeditor): Set image meta data in simple media view
- 06:03 PM Revision a0af0095 (taxeditor): Move getService to CdmStore
- 04:56 PM Revision 70baf07a (taxeditor): Add type specimen icon
- 04:19 PM Revision b9c5a9df (taxeditor): Refactored image loading
- - fix some NPEs
- 03:25 PM Revision 98886159 (taxeditor): Add type specimen icon to derivate editor
- 03:25 PM Revision 0fc5c09c (taxeditor): Fix possible NPE
- 02:31 PM Revision 9e56f862 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- 02:30 PM Revision 78839371 (taxeditor): Avoid persisting data when hitting cancel in EditFromSelectionWizard
- #2645
- create new entitySession for every wizard
- merge for OK, dispose for Cancel - 02:23 PM Revision 7bc3c044 (taxeditor): Remove AuthorHelper which used to automatically convert Persons to Teams
- 01:31 PM Revision 4f31577f (cdmlib): #4761 performance improvent of massindexer by using new hibernate 5 massindexer, speedup by 3x
- 01:31 PM Revision 3adfa9a9 (cdmlib): #4761 performance improvent of massindexer by using new hibernate 5 massindexer, speedup by 3x
- 09:40 AM Revision 8d35d957 (cdmlib): #4761 removing @Indexed from abstract base classes since hibernate now fully supports polymorph class hierarchies
12/04/2015
- 06:01 PM Revision 46829a91 (cdmlib): #4761 avoiding deprecations in highlighter api
- 06:01 PM Revision 96d3c40f (cdmlib): #4761 updating means to obtain the IndexManager to new hibernate search api and extending according test
- 06:01 PM Revision 1d2c42b2 (cdmlib): #4761 TopDocs adapting to removed IndexSearcher.setDefaultFieldSortScoring(boolean, boolean) method
- 06:01 PM Revision 57ea8a3a (cdmlib): #4761 TopDocs now supports maxScore, so TopGroupsWithMaxScore has become obsolete
- 06:01 PM Revision 1432e66e (cdmlib): #4761 removing @Field annotation from CdmBase.id which has become obsolete
- 06:00 PM Revision c9aa51a1 (cdmlib): #4761 correcting usage of new paramaters joinQuery parameters ScoreMode and multipleValuesPerDocument
- 05:59 PM Revision a636f1e2 (cdmlib): adding note with link to the cdmlib-remote-webapp configuration and bootstrapping wiki page
- 05:59 PM Revision 00bea758 (cdmlib): #4761 fixing broken area filter join query, by circumventing a bug in lucene LUCENE-4824 (numeric fields not supported in join queries)
- 04:38 PM Revision 997a1522 (cdmlib-apps): Update cdmlib-app poms to latest version
- 04:33 PM Revision f22020bf (cdmlib-apps): Revert "Minor"
- This reverts commit 0698ba772c2436c50ee7a27d147d3842fb6aa7e7.
- 04:30 PM Revision 0698ba77 (cdmlib-apps): Minor
- 12:14 PM Revision 406e50c6 (cdmlib): adding note with link to the cdmlib-remote-webapp configuration and bootstrapping wiki page
- 12:08 PM Revision a74e40b8 (cdmlib): #5423 fixing broken area filter join query, by circumventing a bug in lucene LUCENE-4824 (numeric fields not supported in join queries)
12/03/2015
- 11:36 AM Revision 74cf0246 (taxeditor): Fix product version for jre product definition
- 10:48 AM Revision 928db13c (cdmlib): #4716 fixing proplems with testdata by making use of the CleanSweepInsertLoadStrategy.class
- 10:31 AM Revision e04d3588 (taxeditor): fix not ordered terms #4821
- 10:25 AM bug #4821: Changing order of terms not possible
- the removing of the term in ordered vocabularies are now fixed. r26743
and for the not ordered terms r26744
- 10:24 AM Revision 9f402ddf (taxeditor): fix #4821
- 09:47 AM Revision 9550f4b4 (cdmlib): #4716 using BooelanQuery added with Occur.FILTER instead of deprecated search method
12/02/2015
- 07:27 PM bug #5430: P2 update of Taxonomic Editor bundled with JRE does not work
- A possible solution could be a new feature plugin in the editor (let's say eu.etaxonomy.taxeditor.feature.jre) and i...
- 07:21 PM bug #5430: P2 update of Taxonomic Editor bundled with JRE does not work
- The initial problem was due to the fact that the jre product was not uploaded to the update site. But after adding th...
- 07:15 PM bug #5430 (New): P2 update of Taxonomic Editor bundled with JRE does not work
- Trying to update the JRE bundled fails with no updates found.
Related tickets: #4452, #5061
When finished upd... - 06:04 PM Revision f6b282fc (cdmlib): #4716 removing deprecated usage of new BooleanQuery, using BooleanQuery.Builder instead
- 05:40 PM Revision 37f997b9 (taxeditor): Remove unused entity cloning
- 04:43 PM Revision 2a5361d0 (cdmlib): index creation without errors, most lucene search test working again
- - using TextField instead of StringField to enable tokenization for some fields
- @IndexedEmbedded(includeEmbeddedO... - 04:14 PM Revision 1124c268 (cdm-vaadin): Correct launch config
- 01:01 PM Revision bf2387cc (cdm-dataportal): #5423 fixing wrongly formatted taxon url
- 11:57 AM Revision 7f0e1f4e (cdm-dataportal): #5426 updating GBIF service Uri
- 11:53 AM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
- Patrick, could you have a look on this.
- 11:50 AM bug #4821: Changing order of terms not possible
- As Cherian won't have time to work on this I switch owner
- 11:42 AM bug #5428 (New): Error handling for local managed server needs to be improved
- Currently the error messages are not giving any useful information.
Jetty API offers a Callback which allows acc... - 11:40 AM bug #5250: Derivate search is slow
- To improve the performance the following has been done:
- I implemented the new formatter framework that provides ... - 11:20 AM Revision 7b9bf97d (cdmlib-apps): delete no data term creation and referencing code
- 11:19 AM task #5427 (New): implement automatic tests for all external links in the ext_links module
- This could be implemented as phpUnit test
- 11:09 AM Revision a41bd5e3 (taxeditor): Fix session problem when creating field unit for a taxon
- 11:09 AM Revision 8bdc4275 (taxeditor): Refactoring type designation gathering according to model change
- 11:09 AM Revision 0847fd74 (taxeditor): Tweak performance for typeDesignation cache in label provider
- 11:09 AM Revision ddd2da06 (taxeditor): Fix refresh problem when creating a FieldUnit with no previous viewer
- content
- 11:09 AM Revision b310b0b0 (taxeditor): Fix possible NPE
- 11:09 AM Revision 7d3bda1d (taxeditor): Remove/Refactor System.out statements
- 11:09 AM Revision 86346121 (taxeditor): Set format for DerivateLabelProvider
- 11:09 AM Revision c06ca2f5 (taxeditor): Refresh only label of the element that has changed
- 11:09 AM Revision a7e3d431 (taxeditor): Use formatter framework in DerivateLabelProvider
- 11:08 AM Revision d496803d (cdmlib): Add uuid based method for getAllChildDerivatives()
- 11:08 AM Revision 95964a96 (cdmlib): Specified method signature as type designations are only available for
- DerivedUnits
- 11:08 AM Revision 6fd1aa50 (cdmlib): Add missing formatter to factory method
- - Fix possible NPEs
- 11:08 AM Revision 0b0a8928 (cdmlib): Implement FormatKeys for all currently used occurrences parameters
- 11:08 AM Revision 64f24974 (cdmlib): Implement first take on formatter framework
- A formatter provides a string representation of an object based on the
selected FormatKeys - 10:46 AM Revision 0c8759ce (cdmlib-apps): minor Fauna Eu changes
12/01/2015
- 05:20 PM Revision e3970b49 (taxeditor): #5420 Add check to dispose input if duplicate editor is already open
- 04:03 PM Revision b6d5d6a6 (taxeditor): #5277 Correct session intialisation and default feature tree caching
- 03:30 PM task #5418 (New): optimize lucene index if possible
- we potentially can optimize the size of the lucene index which also would effect indexing time and resource consumpti...
- 02:40 PM Revision fed20661 (cdmlib): split test for moveDescriptionElements into two tests, on or the correct deletion and the other one for resaving the taxonDescription
- 01:54 PM Revision 6757ea6d (cdmlib): changes for #4960 and #4959
- 12:54 PM Revision 112b48ef (cdmlib): #5415 additional hibernate config file for specific integration test phases
- 11:47 AM bug #5417 (Worksforme): Search not working correctly in Bulk Editor
- From A.Mueller #5267
When I edit a specimen it often does not show up in the bulk editor search anymore afterwor...
11/30/2015
- 02:48 PM Revision 3e01d1be (cdmlib): Show complete stacktrace in import report
- 02:25 PM Revision b00a67e8 (cdmlib): Fix counting of specimens created in ABCD import report
- 02:18 PM bug #5250: Derivate search is slow
- Replying to [[comment9|p.plitzner]]:
> Replying to [[comment7|c.mathew]]:
> Concerning the search performance: Sear... - 02:12 PM bug #5250: Derivate search is slow
- Replying to [[comment9|p.plitzner]]:
> Replying to [[comment7|c.mathew]]:
> The type designations are only retrieve... - 11:55 AM bug #5250: Derivate search is slow
- Replying to [[comment7|c.mathew]]:
> Another main cause of performance issues is the
>
> ... - 01:11 PM Revision 889c74b7 (cdm-dataportal): #5412 updating block content
- 01:06 PM Revision 11c36658 (cdm-dataportal): #5412 adding powered_by_edit icon
- 12:39 PM Revision 79997ad8 (cdmlib-apps): Fauna Europaea import changes
- 10:32 AM Revision 9447b618 (taxeditor): Fix incorrect merge
- 10:29 AM Revision 78d55600 (taxeditor): Removed unused list
- 10:27 AM Revision fc82bdef (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into
- develop
- 10:25 AM Revision 40b943c7 (cdmlib): Add convenience service methods to occurrence service
- 10:23 AM Revision 44ffca34 (cdmlib): Parse spatial data for gathering event in ABCD import #5169
- 07:01 AM Revision fa9bf282 (taxeditor): list specimen-taxon associations separately in specimen details view
- - remove determination info from derivative label
- 07:00 AM Revision 56a58ffb (taxeditor): Add missing transient services
11/29/2015
- 11:04 PM Revision b191cd0f (cdmlib-apps): Vernacular names import fauna europaea
- 10:32 PM Revision 920872f8 (cdmlib-apps): merge of conflicted FaunaEu transformer
- 10:10 PM Revision 520b89c5 (cdmlib-apps): merged FaunaEu transformer
11/27/2015
- 05:49 PM Revision ab0430b9 (cdmlib): #4716 IndexDocValue related issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful - commit of missing file
- 05:41 PM Revision c05e5f35 (cdmlib-apps): merged FaunaEu transformer
- 05:21 PM Revision 6acc30f5 (cdmlib-apps): Add doc for user defined FauEu area import
- 05:00 PM Revision a399b702 (cdmlib-apps): changes for fauna europaea import
- 04:47 PM Revision 7c19e84a (cdmlib-apps): Make FauEU area YU a user defined area #5409
- 04:30 PM Revision 8096b11a (cdmlib): #4716 IndexDocValue relates issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful
- 04:27 PM Revision 4a11928f (cdmlib-apps): Fix FauEu mapping for Baleares #5407
- 03:53 PM feature request #5356: Handle exceptions which require reconnect
- This can be added to the exception handling in eu.etaxonomy.taxeditor.ApplicationWorkbenchAdvisor.
- 11:48 AM Revision 4ed38c9b (taxeditor): #5207 Add validation of credentials on target server before starting application context
- 09:51 AM Revision f5f19dc6 (cdmlib): TaxonServiceSearchTest: assertions no longer unnessecarily doing object comparision, relying on auto boxing is better!
11/26/2015
- 05:44 PM feature request #5209 (Resolved): Improve server availability check
- 05:42 PM feature request #5209 (In Progress): Improve server availability check
- The two main exceptions to handle are
* RemoteConnectFailureException : for when the connection to the remote serve... - 03:19 PM Revision d6cf924b (taxeditor): Cleanup code
- 03:18 PM Revision 0f8ea4a2 (taxeditor): Adds async refresh of server
- 03:15 PM Revision 65e61086 (taxeditor): #5209 Beautify error messages related to connection / access to remote server
- 03:04 PM bug #5211 (New): Error when creating new taxon /problem with sortindex in taxon tree
- 03:03 PM bug #5211 (In Progress): Error when creating new taxon /problem with sortindex in taxon tree
- 10:05 AM Revision e6df36cc (cdmlib): first steps to make lucene working again
- 10:03 AM Revision f860a925 (cdmlib): disabling unnecesary component scan
- 10:02 AM Revision 43e6b43d (cdmlib): #4716 fixing setup of cdmlib-remote-webapp
- - swagger disabled due to https://github.com/springfox/springfox/issues/1055
- eu.etaxonomy.cdm.remote.config.Cdm...
11/25/2015
- 06:48 PM bug #5250 (Resolved): Derivate search is slow
- Assigning for review of the performance and also to check if the other use-cases (taxon selection, etc) still work fi...
- 06:46 PM bug #5250: Derivate search is slow
- Another main cause of performance issues is the
~~~
listTypeDesignations
~~~
call in the DerivateLabelProvider cla... - 06:42 PM bug #5250: Derivate search is slow
- The main reason for the performance is the remote loading of each derivate (using its uuid) even after the entire lis...
- 06:33 PM Revision 6bfd2385 (taxeditor): #5250 Refactor code for improving derivate search performance
- 06:31 PM Revision 335bbd17 (taxeditor): Implement new load method for uuid lists
- 06:31 PM Revision fbedbcd2 (cdmlib): Add load method for uuid lists
- 02:42 PM feature request #4021 (New): H2 running in Server mode
- 02:41 PM feature request #4021 (Feedback): H2 running in Server mode
- Can't see that this is an exact duplicate for #4073. However, move it to unassigned for further discussion
- 02:37 PM feature request #5396 (New): User interface to create a Remote Source
- split from #4193
- 01:57 PM feature request #4716: Other dependencies to be updated
- Stacktrace for above error is:
~~~
org.hibernate.HibernateException: could not reassociate uninitialized transient ... - 01:50 PM feature request #4716: Other dependencies to be updated
- Hallo Katja,
nach dem dependency upgrade bekomme ich ein Problem mit der Methode DescriptionServiceImplTest.testMov... - 11:18 AM Revision bd70ceb2 (cdmlib): Set Unit/Notes and Gathering/Notes in ABCD import #5168
- 07:44 AM Revision f16eafb5 (cdmlib): Import missing parameters for ggbn ABCD import
- - some refactoring
11/24/2015
- 05:29 PM Revision 21ce1d0d (taxeditor): Revert update handler to earlier version
- 04:03 PM Revision e8081706 (cdmlib): Fix import for max elevation
- 03:55 PM Revision 088ea145 (cdmlib): #4716 temporarily making 3 fieldnames lowercase to prevent from trouble with new hibernate naming strategy, needs to be reverted later, see #5369
- 03:12 PM Revision 90634148 (cdmlib): Minor
- 03:03 PM Revision e8ce1472 (cdmlib): Upgrade from aspectj 1.7.4 to 1.8.7 #4716
- 03:03 PM Revision 4e79c4bf (cdmlib): Minor generics changes for TcsXmlExport
- 02:20 PM Revision 5bb64b9f (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
- 02:19 PM Revision f512d3f1 (taxeditor): add delete configurator dialog for taxa and names bulkeditor
- 02:14 PM Revision 5830445c (cdmlib): #4716 upgrading maven jetty plugin to latest, requires java 1.8
- 02:02 PM Revision 6b462070 (taxeditor): Move to simpler update process
- 01:42 PM Revision f4f067bc (cdmlib): add the missing files
- 01:18 PM Revision 946bbfb5 (cdmlib): Remove spring version from remote-webapp pom #4716
- 12:45 PM bug #5104 (Resolved): prevent MarkerTypes from being deleted when there are Marker entities using that type
- test fixed r26650
- 12:44 PM Revision ea969fcb (cdmlib): fix the term delete test
- 12:05 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import
- split from #3509, for details see comments there
- 12:01 PM Revision c7a2c22e (taxeditor): Add repo URIs to update operation
- 11:35 AM Revision 5e4f7643 (cdmlib): Update some more hibernate mapping nameings #4716 and #5369
- 11:15 AM Revision 1b592dc6 (taxeditor): change message if convert person 2 team is not possible #5272
- 10:56 AM bug #5250 (In Progress): Derivate search is slow
- 10:15 AM Revision d2274a1b (taxeditor): fix #4878
- 09:44 AM Revision f4352549 (cdmlib): add LIKE to MatchMode #5391
- 09:19 AM Revision 4043da12 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
11/23/2015
- 06:14 PM Revision 7d743a99 (taxeditor): Remove eclipse env check
- 05:34 PM Revision b645428a (taxeditor): Simplify update process
- 05:24 PM Revision c55a96d8 (cdmlib): Move from hibernate-search to hibernate-search-orm #4716
- 05:23 PM Revision b2a91269 (cdmlib): #4716 upgrading spring xsd schema version to 4.0
- 05:07 PM Revision 763e9e67 (cdmlib): Cleanup
- 05:06 PM Revision d153399a (taxeditor): Cleanup
- 04:59 PM Revision a7d59765 (taxeditor): Correct update operation initialisation
- 04:31 PM Revision 67fc6d9b (taxeditor): #5282 Use null session in referencing objects view
- 04:29 PM Revision eedeeaee (taxeditor): #5160 Use new merge methods with uuids as parameters
- 04:13 PM Revision 3e15b995 (cdmlib): Set failing DescriptionService test preliminary to ignore #4716
- 04:13 PM Revision a3a90b7c (cdmlib): Upgrade to hibernate 5.0.4 #4716
- from 5.0.3
- 04:13 PM Revision 58136b31 (cdmlib): Fix upgrade issues after rebase #4716
- 04:13 PM Revision f5e0f43a (cdmlib): Add jta to pom to fix exception coming with hibernate 5.0.4 #4716
- 04:13 PM Revision eec2d79d (cdmlib): Fix issues after rebase #4716
- 04:13 PM Revision 975a7d74 (cdmlib): Fix compile issues after rebase #4716
- 04:13 PM Revision 515da9f2 (cdmlib): Add some more gitignore and comment ignore TaxonSearchTest #4716
- 04:13 PM Revision c5041b33 (cdmlib): Upgrading to srping 4.2.3, jodatime 2.9.1 and commons-collections 3.2.2
- #4716
- 04:13 PM Revision b0865b1a (cdmlib): Remove dbunit dependency #4803
- 04:13 PM Revision 261f7549 (cdmlib): Update to hibernate 5 for cdmlib-remote and pring (no changes) #4716
- 04:13 PM Revision 8c34728e (cdmlib): Update to hibernate 5 for cdmlib-io #4716
- 04:13 PM Revision 69f17e7e (cdmlib): update gitignore
- 04:13 PM Revision 2638be38 (cdmlib): migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
- * (except for hibernate search tests)
* including new spring-config structure - 04:13 PM Revision 398bcf3e (cdmlib): Adapt cdmlib-persistence to new testing architecture #5370
- 04:13 PM Revision 53c8f824 (cdmlib): Add first version of cdmlib-test #5370
- 04:13 PM Revision 3dd6c00e (cdmlib): Upgrade to hibernate 5 with persistence tests running #4716
- 04:10 PM Revision b2639c6c (cdmlib): Fix all compile errors from services to remote (some only preliminary)
- #4716
- 04:10 PM Revision c6a3dcb1 (cdmlib): Remove MultCollector class #4716
- The original is now available through lucene 4.10
- 04:10 PM Revision 2622a38b (cdmlib): Further adapt to new jackson and new lucene version #4716
- 04:10 PM Revision 442f6aca (cdmlib): Hibernate, lucene and search upgradet to 4.3.11, 4.10.4 and 5.2.1 #4716
- Only compiling, test not running due to leak in connection pooling for
tests - 04:10 PM Revision 1f9b3225 (cdmlib): Some cleanups in hibernate user types
- 04:10 PM Revision 68573bd1 (cdmlib): Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
- validator #4716 and #4702
- 04:10 PM Revision 21d1be03 (cdmlib): Fix bug for embeddable classes in AdvancedBeanInitializer #5383
- 04:10 PM Revision d49d676a (cdmlib): Fix associated specimen retrieval for name determination
- - added test
- 04:10 PM Revision 0fd0248b (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
- 04:10 PM Revision 95364eb4 (cdmlib): Added test for taxon (name) <-> specimen association
- 04:10 PM Revision a89899fb (cdmlib): fix #5341 and fixing deletion of specimen
- 04:10 PM Revision 30a8e44b (cdmlib): removing commented testcases which are broken in spring 4 and unused in the cdm remote controllers
- 04:10 PM Revision ff8cf355 (cdmlib): Upgrade batik and c3p0 #4716
- 04:10 PM Revision 71e146f7 (cdmlib): Upgrade jaxb version and to new glassfish implementation and more spring
- cleanup #4716
- 04:10 PM Revision 8a386b2c (cdmlib): Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
- validator #4716 and #4702
- 04:02 PM Revision 8577462c (cdmlib): Reduce jena-tdl from 3.0.0. to 1.1.2 for now #4716
- 04:02 PM Revision 73e76701 (cdmlib): Update dependency versions for further dependencies #4716
- commons-logging, commons-codec, jboss-logging, jena-tdb,
commons-beanutils, joda-time, ehcache-core, Saxon-HE,
hibern... - 04:02 PM Revision e3562a7b (cdmlib): Update simple dependency versions #4716
- httpcomponents, doxia, poi, jackson, slf4j, aspectjrt + weaver, wsdl4j,
guava, jaxen, xstream, xom, jtds, mysql (rema... - 04:02 PM Revision a8ad5297 (cdmlib): Remove jdom from cdmlib-print pom
- 04:02 PM Revision 423460e5 (cdmlib): Update jdbc-driver versions #4716
- 04:02 PM Revision 27bb7378 (cdmlib): Upgrade hibernate3 maven plugin and ant plugin versions and dependencies
- #4716
- 04:02 PM Revision 718b436c (cdmlib): Add spring-context to cdmlib-model
- 04:02 PM Revision 411b2214 (cdmlib): Change springframework to spring in persistence #4702
- 04:02 PM Revision cb57fc9c (cdmlib): Fix spring-jdbc dependency
- 04:02 PM Revision 44a80e96 (cdmlib): Add jdom2
- 04:02 PM Revision 629e7bc8 (cdmlib): Change from springframework to spring in parent-pom #4702
- 04:02 PM Revision 93c283c9 (cdmlib): Change from springframework to spring in cdmlib-io and -remote #4702
- 04:02 PM Revision 9542db61 (cdmlib): Remove spring-framework test dependency from cdmlib-services #4702
- 04:02 PM Revision 23e27cfd (cdmlib): Change springframework to spring in cdmlib-model #4702
- 04:01 PM Revision 2fb183d7 (cdmlib): Change springframework to spring in cdmlib-commons
- 03:38 PM Revision 1bb7e5ef (taxeditor): Add info dialog when no updates available
- 03:21 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
- Replying to [[comment6|a.kohlbecker]]:
> Just an Idea: Could this be related to the jsvc process which is starting t... - 02:38 PM Revision d74e55d1 (cdmlib): #5338 Check monitor map for null key when getting value
- 01:32 PM Revision cea412e7 (cdm-dataportal): fixing bug introduced by d9763fd
- 01:03 PM Revision b00a4a66 (taxeditor): Move update checks from P2Util to UpdateHandler
- 12:08 PM Revision c77da3e3 (cdm-dataportal): updating layer data for the 'ETOPO1 Global Relief Model'
- 11:41 AM Revision 5006b30c (taxeditor): Generate metadata service without the authentication executor
- 10:39 AM Revision d02ff6c0 (taxeditor): Revert cached services map to be local to configuration class
11/20/2015
- 06:47 PM Revision 2061b426 (taxeditor): #5000 Fix typo error
- 06:47 PM Revision fc09bcdb (taxeditor): #5000 Use new metadata service
- 06:45 PM Revision c2cac51d (cdmlib): #5000 Add new metadata service
- 02:23 PM bug #4962: improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
- I think we can close this ticket since no further improvement is possible without solving #5387
- 02:06 PM bug #4962 (Resolved): improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
- Improvements implemented:
* f36a078 [r26575 commenting performance measure print-out via Systemerr|* 256c8f8 r26574... - 02:22 PM feature request #5387 (New): Completely avoid all cache strategies during read operations
- The cdm make use of `CacheStrategies` in order to update titelCaches and taggedTitles of Taxa, Names, Authors, Refere...
- 02:04 PM Revision f36a0784 (cdmlib): #4962 commenting performance measure print-out via System.err
- 01:52 PM Revision 256c8f84 (cdmlib): #4962 avoiding bean initialization in getChildNodesAtRank() as much as possible - performance improvement
- 10:49 AM feature request #4021 (Duplicate): H2 running in Server mode
- duplicate of #4073
11/19/2015
- 11:14 PM bug #4962: improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
- results of more detailed performance measures. In the following log the time (ms) of specific parts of the whole proc...
- 03:40 PM Revision b4503332 (cdm-dataportal): #5385 openlayers maps adapt to parent DOM element width and the map aspect ratio can be set instead of fixed width and height
- 11:16 AM Revision 34e5c415 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
- 11:15 AM Revision 07d015cb (taxeditor): fix #4878
- 10:51 AM Revision ad401f08 (cdmlib): revert chamges in MatchMode
- 10:44 AM Revision 6f126f71 (cdmlib): revert chamges in MatchMode
- 10:36 AM feature request #4837: responsive layout & theme
- c.ring wrote:
> modification of theme CSS for full responsiveness handed over to Tobias Gehroldt (MfN)
Caroline un... - 10:14 AM Revision e97140ed (cdmlib-apps): minor
- 08:48 AM Revision 828f332d (cdmlib-apps): changes for vernacular names import
11/18/2015
- 04:10 PM Revision c1fef20a (cdm-dataportal): flexible size for list of taxa managed by experts
- 03:51 PM task #5384 (New): consider update to openlayers 3.x
- Openlayers 3 has a lot of improvements over version 2:
* high-dpi support
* better vector rendering engine
... - 03:34 PM Revision 5b5051a9 (cdm-dataportal): fixing name render template for related_taxon
- 03:10 PM Revision 541d252e (cdmlib): Fix typo
- 03:08 PM Revision bf90783c (cdm-dataportal): #4313 changing label
- 03:05 PM Revision 403ac024 (cdmlib): Extended test for specimens associations
- 03:04 PM Revision 4f10c48b (cdmlib): Remove unused parameters
- 12:25 PM Revision 572aa6d2 (cdmlib): Add test for all possible specimen associations
- 11:44 AM Revision d9763fd3 (cdm-dataportal): #4313 display of expert details complete and layout fine tuning done
- 11:44 AM Revision 7663cd0b (cdm-dataportal): #4313 first implementation of the taxon experts tab
- 10:57 AM feature request #5174: web services for experts implemented
- additional changes:
* 887fec0 r26450 relationship type as additinal filter option for TaxonNodeAgentRelation servic... - 10:27 AM feature request #5174: web services for experts implemented
- for reviewing please take the following REST services into account:
* http://test.e-taxonomy.eu/cdmserver/fauna_euro... - 10:56 AM Revision 887fec08 (cdmlib): #4313 relationship type as additinal filter option for TaxonNodeAgentRelation services
11/17/2015
- 06:51 PM Revision 5e251525 (taxeditor): Add determination info to DerivateLabelProvider
- 04:43 PM Revision db6dfacc (taxeditor): Add missing transient service method
- 04:34 PM Revision 76be242c (taxeditor): Simplify selectionChanged method
- 04:33 PM Revision 9de4bfe6 (taxeditor): Add icon to DerivateView context menu
- 04:32 PM Revision 550eeb6f (cdmlib): Add new service method listDerminationEvents to occurrence service which
- lists all determination events that contain the given specimen
- 04:32 PM Revision cc1e6737 (cdmlib): Check for names and synonymy when checking specimen determinations
- 04:32 PM Revision e6d7d39f (cdmlib): Add java doc
- 04:09 PM Revision 45a894e6 (cdmlib): Clean up BeanInitNode embeddable issues #5383
- 03:54 PM Revision cd02d8bd (cdmlib): Fix bug for embeddable classes in AdvancedBeanInitializer #5383
- 03:30 PM Revision 3aa5ea5e (taxeditor): Streamline search method due to cdmlib service changes
- 03:18 PM feature request #5174 (Resolved): web services for experts implemented
- all implemented:
* b014351 [r26440 implementing full stack of methods to expose TaxonNodeAgentRelations …|* fe33102 ... - 03:09 PM Revision b014351b (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations throught the AgentController with filter options
- 02:46 PM Revision 3dea8ed1 (cdmlib): fixing #4878
- 01:46 PM Revision cbd1f119 (taxeditor): Add missing pluging dependency to feature.xml
- 01:32 PM Revision 22a3e273 (taxeditor): Adapt transient service to cdmlib changes
- 01:29 PM Revision 42f8ab76 (cdmlib): Fix associated specimen retrieval for name determination
- - added test
- 12:55 PM Revision 604df0ab (cdmlib): Fix copy&paste error
- 12:35 PM Revision 848d3f7d (cdmlib): Fix failing tests
- - adapted to new return type
- 11:47 AM Revision e6e5ebdc (cdmlib): Extend service methods to retrieve specimens that are determiined as a
- taxon name
- 10:50 AM Revision df85b8bf (cdmlib): When retrieving associated specimens retrieve all
- IndividualsAssocations, TypeDesignation, Determinations
- 10:48 AM Revision fa2bd652 (cdmlib): Add javadoc
11/16/2015
- 05:13 PM Revision 279996e5 (taxeditor): Remove unused classpath entry
- 04:51 PM Revision a187717b (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- 04:42 PM Revision 3387bfe5 (cdmlib): Remove failing legacy test
- 04:18 PM Revision 76c823c7 (taxeditor): Add toggle for "link with taxon selection" to context menu of
- DerivativeEditor
- 03:12 PM Revision 15202dd0 (taxeditor): Fix test environment for webapp test
- 03:12 PM Revision 1c945ab8 (taxeditor): Ignore cdmlib war file
- 03:11 PM Revision 7a96337f (taxeditor): #4073 Add new project for lanuching embedded jetty server using cdmlib webapp
- #4073 Add jetty server dependencies
#4073 Add stop start possibility for server
#4073 Add functionality to control ... - 03:05 PM Revision eee9b39a (cdmlib): Refactored import return type from boolean to ImportResult
- 03:05 PM Revision 1ae59e40 (cdmlib): Move import report to import state super class
- 03:01 PM Revision fe33102c (cdmlib): #4313 introducing AgentPortalController
- 03:01 PM Revision 798120f1 (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
- 03:01 PM Revision 33b73396 (cdmlib): using long value for count in pager & easier access to utilty method
- 02:40 PM Revision a13b35df (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
- 02:39 PM Revision 07655893 (taxeditor): minor
- 02:35 PM Revision f04ebb2b (taxeditor): Update eclipse compile / runtime to JavaSE-1.7
- Conflicts:
eu.etaxonomy.taxeditor.application/.classpath - 02:31 PM Revision d0a4b949 (taxeditor): fixing #4808
- 02:28 PM Revision ae1c072d (taxeditor): #4073 Add error callback for CDM Server start
- 01:25 PM Revision c290a960 (cdmlib): minor
- 01:24 PM Revision 27b69718 (cdmlib): fix merge description into another description
- 12:49 PM Revision 42bbaccb (cdm-dataportal): Reorganize dataportal css
- 12:37 PM Revision 24b8816f (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
- 12:36 PM Revision c1c463d7 (taxeditor): fix move whole description to another description and adding delete configurator to bulk editor
- 10:38 AM Revision 8f065066 (taxeditor): Move "link with taxon selection" action to main toolbar
- 09:30 AM Revision 2d885c52 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
- 09:30 AM Revision 7548e4de (cdmlib-apps): minor
- 08:11 AM Revision d8af4f9e (taxeditor): Remove report configuration from ABCD import wizard
- 08:08 AM Revision bda3782e (taxeditor): Show report text dialog after finishing import
11/13/2015
- 06:48 PM Revision 8c244d13 (taxeditor): #4073 Add webapp to editor project and fix file location issue
- 05:27 PM Revision dcfe621d (taxeditor): #4073 Fix incorrect stop behaviour, Add mysql jdbc connector jar
- 04:37 PM Revision 5111c428 (taxeditor): #4073 Simplify manged server ui
- 03:16 PM Revision b0ca9585 (cdmlib-apps): Update app-import application contexts to work with spring-security 4
- #4716
- 03:15 PM Revision 1542dee5 (cdmlib-apps): Import references as taxon descriptions in FauEu
- * Until now they were imported as name descriptions
- 02:34 PM Revision 32bfa802 (taxeditor): #4073 Add start / stop methods for managed server
11/12/2015
- 06:51 PM Revision 7c932bae (taxeditor): #4073 Add functionality to control managed server in login dialog
- 05:45 PM feature request #3742: Display altitude, distance to Ground and watersurface correctly in dataportal
- display fixed by r26394 74ee6b5
- 05:43 PM Revision c08f7882 (cdm-dataportal): avoiding display of 'Exact location' for empty Point data
- 05:25 PM Revision 74ee6b54 (cdm-dataportal): #3742 displaying altitude, distance to Ground and watersurface correctly with ranges
- 04:36 PM Revision 5e2ad9e7 (taxeditor): #4073 Add stop start possibility for server
- 03:35 PM Revision 07c6e912 (cdmlib): #2273 removing HACK: hardcoded distribution status colors for cyprus a no longer needed
- 03:35 PM Revision a3840b75 (cdmlib): removing obsoltete version definition in submodule pom.xml
- 03:19 PM Revision ea6faa96 (taxeditor): #4073 Add jetty server dependencies
- 03:15 PM Revision 02b54e8c (taxeditor): Update eclipse compile / runtime to JavaSE-1.7
- 11:02 AM task #5375 (In Progress): cdm-server without jsvc
- jsvc is used to start the cdm-server as daemon. Jetty 8 is however no longer using jsvc it is using the [apache commo...
11/11/2015
- 05:03 PM Revision d2ea9779 (taxeditor): Convert DerivateView to an EditorPart
- 04:45 PM feature request #4383: multiple issues with de-duplication of references in bibliography
- detaching from parent ticket #4314
- 04:13 PM Revision 700c724c (taxeditor): #4073 Add new project for lanuching embedded jetty server using cdmlib webapp
- 01:38 PM Revision 06a6dcf1 (taxeditor): Fix association creation
- 01:38 PM Revision 5403b045 (taxeditor): Remove unused class
- 11:07 AM Revision b92b3235 (taxeditor): Merge branch 'develop' into unify_derivative_views
- 10:38 AM Revision 2ae69503 (cdmlib): Add orphanRemoval to SingleReadAlignment set of Sequence #5200
11/10/2015
- 06:39 PM Revision d0e973da (taxeditor): Add flag for displaying choose action in name details view #5260
- 06:02 PM bug #5371 (Worksforme): all name parts of taxa with flag doubtful = true are displayed in italic
- tested at the taxon "Crepis heterophylla" in the cichoriae production database.
The taxon which has been set dou... - 05:11 PM Revision c7f2a478 (utis-core): fixing bug regarding writing the last updated timestamp and writing also a log of timestamps
- 04:15 PM Revision df5f4832 (taxeditor): Fix possible NPE #4850
- 03:23 PM feature request #4716 (In Progress): Other dependencies to be updated
- 03:20 PM Revision 8a6a41cd (taxeditor): Fix link to default handler #5155
- 02:32 PM Revision 168cc689 (taxeditor): minor
- 12:40 PM Revision f2fdced6 (cdmlib): Add UUID delete method to occurrence service #5200
- 12:40 PM Revision e21e3b88 (taxeditor): Adapt to service changes #5200
- 12:34 PM Revision 6aa0af63 (cdmlib): fixing #5303
- 12:30 PM Revision 1b12bb24 (cdmlib): fixing #5303
- 11:56 AM Revision 3d8401d8 (cdmlib): Fix sequence and single read deletion #5200
- - adapted tests
- 11:56 AM Revision b122f530 (cdmlib): Add test for deleting SingleRead that is attached to multpile seuqences
- #5200
- 11:56 AM Revision 455c5da0 (cdmlib): Set singleRead to null when removing SingleReadAlignment from sequence
- to avoid "object would be re-saved" #5200
- 11:56 AM Revision b9e5fce5 (cdmlib): added DAO for SingleReads #5200
- 11:56 AM Revision c1a0b171 (cdmlib): Added test for taxon (name) <-> specimen association
- 10:34 AM Revision cf307878 (taxeditor): fixing #5319
- 10:26 AM Revision 50569a3a (taxeditor): fixing #5319
- 09:41 AM Revision 47ff0a08 (cdmlib): Revert "accept the change from a number to null in TimePeriod fields #5319"
- This reverts commit a3960fa7c279f2aa9fafbefde098c529e269d382.
- 09:31 AM Revision c12b01cf (taxeditor): fixing #5115
11/09/2015
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