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From 10/29/2015 to 11/27/2015

11/27/2015

05:49 PM Revision ab0430b9 (cdmlib): #4716 IndexDocValue related issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful - commit of missing file
Andreas Kohlbecker
05:41 PM Revision c05e5f35 (cdmlib-apps): merged FaunaEu transformer
U-BGBM\k.luther
05:21 PM Revision 6acc30f5 (cdmlib-apps): Add doc for user defined FauEu area import
Andreas Müller
05:00 PM Revision a399b702 (cdmlib-apps): changes for fauna europaea import
U-BGBM\k.luther
04:47 PM Revision 7c19e84a (cdmlib-apps): Make FauEU area YU a user defined area #5409
Andreas Müller
04:30 PM Revision 8096b11a (cdmlib): #4716 IndexDocValue relates issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful
Andreas Kohlbecker
04:27 PM Revision 4a11928f (cdmlib-apps): Fix FauEu mapping for Baleares #5407
Andreas Müller
03:53 PM feature request #5356: Handle exceptions which require reconnect
This can be added to the exception handling in eu.etaxonomy.taxeditor.ApplicationWorkbenchAdvisor.
Cherian Mathew
11:48 AM Revision 4ed38c9b (taxeditor): #5207 Add validation of credentials on target server before starting application context
Cherian Mathew
09:51 AM Revision f5f19dc6 (cdmlib): TaxonServiceSearchTest: assertions no longer unnessecarily doing object comparision, relying on auto boxing is better!
Andreas Kohlbecker

11/26/2015

05:44 PM feature request #5209 (Resolved): Improve server availability check
Cherian Mathew
05:42 PM feature request #5209 (In Progress): Improve server availability check
The two main exceptions to handle are
* RemoteConnectFailureException : for when the connection to the remote serve...
Cherian Mathew
03:19 PM Revision d6cf924b (taxeditor): Cleanup code
Cherian Mathew
03:18 PM Revision 0f8ea4a2 (taxeditor): Adds async refresh of server
Cherian Mathew
03:15 PM Revision 65e61086 (taxeditor): #5209 Beautify error messages related to connection / access to remote server
Cherian Mathew
03:04 PM bug #5211 (New): Error when creating new taxon /problem with sortindex in taxon tree
Andreas Müller
03:03 PM bug #5211 (In Progress): Error when creating new taxon /problem with sortindex in taxon tree
Andreas Müller
10:05 AM Revision e6df36cc (cdmlib): first steps to make lucene working again
Andreas Kohlbecker
10:03 AM Revision f860a925 (cdmlib): disabling unnecesary component scan
Andreas Kohlbecker
10:02 AM Revision 43e6b43d (cdmlib): #4716 fixing setup of cdmlib-remote-webapp
- swagger disabled due to https://github.com/springfox/springfox/issues/1055
- eu.etaxonomy.cdm.remote.config.Cdm...
Andreas Kohlbecker

11/25/2015

06:48 PM bug #5250 (Resolved): Derivate search is slow
Assigning for review of the performance and also to check if the other use-cases (taxon selection, etc) still work fi... Cherian Mathew
06:46 PM bug #5250: Derivate search is slow
Another main cause of performance issues is the
~~~
listTypeDesignations
~~~
call in the DerivateLabelProvider cla...
Cherian Mathew
06:42 PM bug #5250: Derivate search is slow
The main reason for the performance is the remote loading of each derivate (using its uuid) even after the entire lis... Cherian Mathew
06:33 PM Revision 6bfd2385 (taxeditor): #5250 Refactor code for improving derivate search performance
Cherian Mathew
06:31 PM Revision 335bbd17 (taxeditor): Implement new load method for uuid lists
Cherian Mathew
06:31 PM Revision fbedbcd2 (cdmlib): Add load method for uuid lists
Cherian Mathew
02:42 PM feature request #4021 (New): H2 running in Server mode
Andreas Müller
02:41 PM feature request #4021 (Feedback): H2 running in Server mode
Can't see that this is an exact duplicate for #4073. However, move it to unassigned for further discussion
Andreas Müller
02:37 PM feature request #5396 (New): User interface to create a Remote Source
split from #4193
Andreas Müller
01:57 PM feature request #4716: Other dependencies to be updated
Stacktrace for above error is:
~~~
org.hibernate.HibernateException: could not reassociate uninitialized transient ...
Andreas Müller
01:50 PM feature request #4716: Other dependencies to be updated
Hallo Katja,
nach dem dependency upgrade bekomme ich ein Problem mit der Methode DescriptionServiceImplTest.testMov...
Andreas Müller
11:18 AM Revision bd70ceb2 (cdmlib): Set Unit/Notes and Gathering/Notes in ABCD import #5168
Patrick Plitzner
07:44 AM Revision f16eafb5 (cdmlib): Import missing parameters for ggbn ABCD import
- some refactoring Patrick Plitzner

11/24/2015

05:29 PM Revision 21ce1d0d (taxeditor): Revert update handler to earlier version
Cherian Mathew
04:03 PM Revision e8081706 (cdmlib): Fix import for max elevation
Patrick Plitzner
03:55 PM Revision 088ea145 (cdmlib): #4716 temporarily making 3 fieldnames lowercase to prevent from trouble with new hibernate naming strategy, needs to be reverted later, see #5369
Andreas Kohlbecker
03:12 PM Revision 90634148 (cdmlib): Minor
Andreas Müller
03:03 PM Revision e8ce1472 (cdmlib): Upgrade from aspectj 1.7.4 to 1.8.7 #4716
Andreas Müller
03:03 PM Revision 4e79c4bf (cdmlib): Minor generics changes for TcsXmlExport
Andreas Müller
02:20 PM Revision 5bb64b9f (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
02:19 PM Revision f512d3f1 (taxeditor): add delete configurator dialog for taxa and names bulkeditor
Katja Luther
02:14 PM Revision 5830445c (cdmlib): #4716 upgrading maven jetty plugin to latest, requires java 1.8
Andreas Kohlbecker
02:02 PM Revision 6b462070 (taxeditor): Move to simpler update process
Cherian Mathew
01:42 PM Revision f4f067bc (cdmlib): add the missing files
Katja Luther
01:18 PM Revision 946bbfb5 (cdmlib): Remove spring version from remote-webapp pom #4716
Andreas Müller
12:45 PM bug #5104 (Resolved): prevent MarkerTypes from being deleted when there are Marker entities using that type
test fixed r26650
Katja Luther
12:44 PM Revision ea969fcb (cdmlib): fix the term delete test
Katja Luther
12:05 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import
split from #3509, for details see comments there
Patrick Plitzner
12:01 PM Revision c7a2c22e (taxeditor): Add repo URIs to update operation
Cherian Mathew
11:35 AM Revision 5e4f7643 (cdmlib): Update some more hibernate mapping nameings #4716 and #5369
Andreas Müller
11:15 AM Revision 1b592dc6 (taxeditor): change message if convert person 2 team is not possible #5272
Katja Luther
10:56 AM bug #5250 (In Progress): Derivate search is slow
Cherian Mathew
10:15 AM Revision d2274a1b (taxeditor): fix #4878
Katja Luther
09:44 AM Revision f4352549 (cdmlib): add LIKE to MatchMode #5391
Katja Luther
09:19 AM Revision 4043da12 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther

11/23/2015

06:14 PM Revision 7d743a99 (taxeditor): Remove eclipse env check
Cherian Mathew
05:34 PM Revision b645428a (taxeditor): Simplify update process
Cherian Mathew
05:24 PM Revision c55a96d8 (cdmlib): Move from hibernate-search to hibernate-search-orm #4716
Andreas Müller
05:23 PM Revision b2a91269 (cdmlib): #4716 upgrading spring xsd schema version to 4.0
Andreas Kohlbecker
05:07 PM Revision 763e9e67 (cdmlib): Cleanup
Cherian Mathew
05:06 PM Revision d153399a (taxeditor): Cleanup
Cherian Mathew
04:59 PM Revision a7d59765 (taxeditor): Correct update operation initialisation
Cherian Mathew
04:31 PM Revision 67fc6d9b (taxeditor): #5282 Use null session in referencing objects view
Cherian Mathew
04:29 PM Revision eedeeaee (taxeditor): #5160 Use new merge methods with uuids as parameters
Cherian Mathew
04:13 PM Revision 3e15b995 (cdmlib): Set failing DescriptionService test preliminary to ignore #4716
Andreas Müller
04:13 PM Revision a3a90b7c (cdmlib): Upgrade to hibernate 5.0.4 #4716
from 5.0.3 Andreas Müller
04:13 PM Revision 58136b31 (cdmlib): Fix upgrade issues after rebase #4716
Andreas Müller
04:13 PM Revision f5e0f43a (cdmlib): Add jta to pom to fix exception coming with hibernate 5.0.4 #4716
Andreas Müller
04:13 PM Revision eec2d79d (cdmlib): Fix issues after rebase #4716
Andreas Müller
04:13 PM Revision 975a7d74 (cdmlib): Fix compile issues after rebase #4716
Andreas Müller
04:13 PM Revision 515da9f2 (cdmlib): Add some more gitignore and comment ignore TaxonSearchTest #4716
Andreas Müller
04:13 PM Revision c5041b33 (cdmlib): Upgrading to srping 4.2.3, jodatime 2.9.1 and commons-collections 3.2.2
#4716 Andreas Müller
04:13 PM Revision b0865b1a (cdmlib): Remove dbunit dependency #4803
Andreas Müller
04:13 PM Revision 261f7549 (cdmlib): Update to hibernate 5 for cdmlib-remote and pring (no changes) #4716
Andreas Müller
04:13 PM Revision 8c34728e (cdmlib): Update to hibernate 5 for cdmlib-io #4716
Andreas Müller
04:13 PM Revision 69f17e7e (cdmlib): update gitignore
Andreas Müller
04:13 PM Revision 2638be38 (cdmlib): migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
* (except for hibernate search tests)
* including new spring-config structure
Andreas Müller
04:13 PM Revision 398bcf3e (cdmlib): Adapt cdmlib-persistence to new testing architecture #5370
Andreas Müller
04:13 PM Revision 53c8f824 (cdmlib): Add first version of cdmlib-test #5370
Andreas Müller
04:13 PM Revision 3dd6c00e (cdmlib): Upgrade to hibernate 5 with persistence tests running #4716
Andreas Müller
04:10 PM Revision b2639c6c (cdmlib): Fix all compile errors from services to remote (some only preliminary)
#4716 Andreas Müller
04:10 PM Revision c6a3dcb1 (cdmlib): Remove MultCollector class #4716
The original is now available through lucene 4.10 Andreas Müller
04:10 PM Revision 2622a38b (cdmlib): Further adapt to new jackson and new lucene version #4716
Andreas Müller
04:10 PM Revision 442f6aca (cdmlib): Hibernate, lucene and search upgradet to 4.3.11, 4.10.4 and 5.2.1 #4716
Only compiling, test not running due to leak in connection pooling for
tests
Andreas Müller
04:10 PM Revision 1f9b3225 (cdmlib): Some cleanups in hibernate user types
Andreas Müller
04:10 PM Revision 68573bd1 (cdmlib): Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702 Andreas Müller
04:10 PM Revision 21d1be03 (cdmlib): Fix bug for embeddable classes in AdvancedBeanInitializer #5383
Andreas Müller
04:10 PM Revision d49d676a (cdmlib): Fix associated specimen retrieval for name determination
- added test Patrick Plitzner
04:10 PM Revision 0fd0248b (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
Andreas Kohlbecker
04:10 PM Revision 95364eb4 (cdmlib): Added test for taxon (name) <-> specimen association
Patrick Plitzner
04:10 PM Revision a89899fb (cdmlib): fix #5341 and fixing deletion of specimen
Katja Luther
04:10 PM Revision 30a8e44b (cdmlib): removing commented testcases which are broken in spring 4 and unused in the cdm remote controllers
Andreas Kohlbecker
04:10 PM Revision ff8cf355 (cdmlib): Upgrade batik and c3p0 #4716
Andreas Müller
04:10 PM Revision 71e146f7 (cdmlib): Upgrade jaxb version and to new glassfish implementation and more spring
cleanup #4716 Andreas Müller
04:10 PM Revision 8a386b2c (cdmlib): Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702 Andreas Müller
04:02 PM Revision 8577462c (cdmlib): Reduce jena-tdl from 3.0.0. to 1.1.2 for now #4716
Andreas Müller
04:02 PM Revision 73e76701 (cdmlib): Update dependency versions for further dependencies #4716
commons-logging, commons-codec, jboss-logging, jena-tdb,
commons-beanutils, joda-time, ehcache-core, Saxon-HE,
hibern...
Andreas Müller
04:02 PM Revision e3562a7b (cdmlib): Update simple dependency versions #4716
httpcomponents, doxia, poi, jackson, slf4j, aspectjrt + weaver, wsdl4j,
guava, jaxen, xstream, xom, jtds, mysql (rema...
Andreas Müller
04:02 PM Revision a8ad5297 (cdmlib): Remove jdom from cdmlib-print pom
Andreas Müller
04:02 PM Revision 423460e5 (cdmlib): Update jdbc-driver versions #4716
Andreas Müller
04:02 PM Revision 27bb7378 (cdmlib): Upgrade hibernate3 maven plugin and ant plugin versions and dependencies
#4716 Andreas Müller
04:02 PM Revision 718b436c (cdmlib): Add spring-context to cdmlib-model
Andreas Müller
04:02 PM Revision 411b2214 (cdmlib): Change springframework to spring in persistence #4702
Andreas Müller
04:02 PM Revision cb57fc9c (cdmlib): Fix spring-jdbc dependency
Andreas Müller
04:02 PM Revision 44a80e96 (cdmlib): Add jdom2
Andreas Müller
04:02 PM Revision 629e7bc8 (cdmlib): Change from springframework to spring in parent-pom #4702
Andreas Müller
04:02 PM Revision 93c283c9 (cdmlib): Change from springframework to spring in cdmlib-io and -remote #4702
Andreas Müller
04:02 PM Revision 9542db61 (cdmlib): Remove spring-framework test dependency from cdmlib-services #4702
Andreas Müller
04:02 PM Revision 23e27cfd (cdmlib): Change springframework to spring in cdmlib-model #4702
Andreas Müller
04:01 PM Revision 2fb183d7 (cdmlib): Change springframework to spring in cdmlib-commons
Andreas Müller
03:38 PM Revision 1bb7e5ef (taxeditor): Add info dialog when no updates available
Cherian Mathew
03:21 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
Replying to [[comment6|a.kohlbecker]]:
> Just an Idea: Could this be related to the jsvc process which is starting t...
Andreas Kohlbecker
02:38 PM Revision d74e55d1 (cdmlib): #5338 Check monitor map for null key when getting value
Cherian Mathew
01:32 PM Revision cea412e7 (cdm-dataportal): fixing bug introduced by d9763fd
Andreas Kohlbecker
01:03 PM Revision b00a4a66 (taxeditor): Move update checks from P2Util to UpdateHandler
Cherian Mathew
12:08 PM Revision c77da3e3 (cdm-dataportal): updating layer data for the 'ETOPO1 Global Relief Model'
Andreas Kohlbecker
11:41 AM Revision 5006b30c (taxeditor): Generate metadata service without the authentication executor
Cherian Mathew
10:39 AM Revision d02ff6c0 (taxeditor): Revert cached services map to be local to configuration class
Cherian Mathew

11/20/2015

06:47 PM Revision 2061b426 (taxeditor): #5000 Fix typo error
Cherian Mathew
06:47 PM Revision fc09bcdb (taxeditor): #5000 Use new metadata service
Cherian Mathew
06:45 PM Revision c2cac51d (cdmlib): #5000 Add new metadata service
Cherian Mathew
02:23 PM bug #4962: improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
I think we can close this ticket since no further improvement is possible without solving #5387
Andreas Kohlbecker
02:06 PM bug #4962 (Resolved): improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
Improvements implemented:
* f36a078 [r26575 commenting performance measure print-out via Systemerr|* 256c8f8 r26574...
Andreas Kohlbecker
02:22 PM feature request #5387 (New): Completely avoid all cache strategies during read operations
The cdm make use of `CacheStrategies` in order to update titelCaches and taggedTitles of Taxa, Names, Authors, Refere... Andreas Kohlbecker
02:04 PM Revision f36a0784 (cdmlib): #4962 commenting performance measure print-out via System.err
Andreas Kohlbecker
01:52 PM Revision 256c8f84 (cdmlib): #4962 avoiding bean initialization in getChildNodesAtRank() as much as possible - performance improvement
Andreas Kohlbecker
10:49 AM feature request #4021 (Duplicate): H2 running in Server mode
duplicate of #4073
Cherian Mathew

11/19/2015

11:14 PM bug #4962: improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
results of more detailed performance measures. In the following log the time (ms) of specific parts of the whole proc... Andreas Kohlbecker
03:40 PM Revision b4503332 (cdm-dataportal): #5385 openlayers maps adapt to parent DOM element width and the map aspect ratio can be set instead of fixed width and height
Andreas Kohlbecker
11:16 AM Revision 34e5c415 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
11:15 AM Revision 07d015cb (taxeditor): fix #4878
Katja Luther
10:51 AM Revision ad401f08 (cdmlib): revert chamges in MatchMode
Katja Luther
10:44 AM Revision 6f126f71 (cdmlib): revert chamges in MatchMode
Katja Luther
10:36 AM feature request #4837: responsive layout & theme
c.ring wrote:
> modification of theme CSS for full responsiveness handed over to Tobias Gehroldt (MfN)
Caroline un...
Andreas Kohlbecker
10:14 AM Revision e97140ed (cdmlib-apps): minor
U-BGBM\k.luther
08:48 AM Revision 828f332d (cdmlib-apps): changes for vernacular names import
U-BGBM\k.luther

11/18/2015

04:10 PM Revision c1fef20a (cdm-dataportal): flexible size for list of taxa managed by experts
Andreas Kohlbecker
03:51 PM task #5384 (New): consider update to openlayers 3.x
Openlayers 3 has a lot of improvements over version 2:
* high-dpi support
* better vector rendering engine
...
Andreas Kohlbecker
03:34 PM Revision 5b5051a9 (cdm-dataportal): fixing name render template for related_taxon
Andreas Kohlbecker
03:10 PM Revision 541d252e (cdmlib): Fix typo
Patrick Plitzner
03:08 PM Revision bf90783c (cdm-dataportal): #4313 changing label
Andreas Kohlbecker
03:05 PM Revision 403ac024 (cdmlib): Extended test for specimens associations
Patrick Plitzner
03:04 PM Revision 4f10c48b (cdmlib): Remove unused parameters
Patrick Plitzner
12:25 PM Revision 572aa6d2 (cdmlib): Add test for all possible specimen associations
Patrick Plitzner
11:44 AM Revision d9763fd3 (cdm-dataportal): #4313 display of expert details complete and layout fine tuning done
Andreas Kohlbecker
11:44 AM Revision 7663cd0b (cdm-dataportal): #4313 first implementation of the taxon experts tab
Andreas Kohlbecker
10:57 AM feature request #5174: web services for experts implemented
additional changes:
* 887fec0 r26450 relationship type as additinal filter option for TaxonNodeAgentRelation servic...
Andreas Kohlbecker
10:27 AM feature request #5174: web services for experts implemented
for reviewing please take the following REST services into account:
* http://test.e-taxonomy.eu/cdmserver/fauna_euro...
Andreas Kohlbecker
10:56 AM Revision 887fec08 (cdmlib): #4313 relationship type as additinal filter option for TaxonNodeAgentRelation services
Andreas Kohlbecker

11/17/2015

06:51 PM Revision 5e251525 (taxeditor): Add determination info to DerivateLabelProvider
Patrick Plitzner
04:43 PM Revision db6dfacc (taxeditor): Add missing transient service method
Patrick Plitzner
04:34 PM Revision 76be242c (taxeditor): Simplify selectionChanged method
Patrick Plitzner
04:33 PM Revision 9de4bfe6 (taxeditor): Add icon to DerivateView context menu
Patrick Plitzner
04:32 PM Revision 550eeb6f (cdmlib): Add new service method listDerminationEvents to occurrence service which
lists all determination events that contain the given specimen Patrick Plitzner
04:32 PM Revision cc1e6737 (cdmlib): Check for names and synonymy when checking specimen determinations
Patrick Plitzner
04:32 PM Revision e6d7d39f (cdmlib): Add java doc
Patrick Plitzner
04:09 PM Revision 45a894e6 (cdmlib): Clean up BeanInitNode embeddable issues #5383
Andreas Müller
03:54 PM Revision cd02d8bd (cdmlib): Fix bug for embeddable classes in AdvancedBeanInitializer #5383
Andreas Müller
03:30 PM Revision 3aa5ea5e (taxeditor): Streamline search method due to cdmlib service changes
Patrick Plitzner
03:18 PM feature request #5174 (Resolved): web services for experts implemented
all implemented:
* b014351 [r26440 implementing full stack of methods to expose TaxonNodeAgentRelations …|* fe33102 ...
Andreas Kohlbecker
03:09 PM Revision b014351b (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations throught the AgentController with filter options
Andreas Kohlbecker
02:46 PM Revision 3dea8ed1 (cdmlib): fixing #4878
Katja Luther
01:46 PM Revision cbd1f119 (taxeditor): Add missing pluging dependency to feature.xml
Patrick Plitzner
01:32 PM Revision 22a3e273 (taxeditor): Adapt transient service to cdmlib changes
Patrick Plitzner
01:29 PM Revision 42f8ab76 (cdmlib): Fix associated specimen retrieval for name determination
- added test Patrick Plitzner
12:55 PM Revision 604df0ab (cdmlib): Fix copy&paste error
Patrick Plitzner
12:35 PM Revision 848d3f7d (cdmlib): Fix failing tests
- adapted to new return type Patrick Plitzner
11:47 AM Revision e6e5ebdc (cdmlib): Extend service methods to retrieve specimens that are determiined as a
taxon name Patrick Plitzner
10:50 AM Revision df85b8bf (cdmlib): When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations Patrick Plitzner
10:48 AM Revision fa2bd652 (cdmlib): Add javadoc
Patrick Plitzner

11/16/2015

05:13 PM Revision 279996e5 (taxeditor): Remove unused classpath entry
Patrick Plitzner
04:51 PM Revision a187717b (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
Patrick Plitzner
04:42 PM Revision 3387bfe5 (cdmlib): Remove failing legacy test
Patrick Plitzner
04:18 PM Revision 76c823c7 (taxeditor): Add toggle for "link with taxon selection" to context menu of
DerivativeEditor Patrick Plitzner
03:12 PM Revision 15202dd0 (taxeditor): Fix test environment for webapp test
Cherian Mathew
03:12 PM Revision 1c945ab8 (taxeditor): Ignore cdmlib war file
Cherian Mathew
03:11 PM Revision 7a96337f (taxeditor): #4073 Add new project for lanuching embedded jetty server using cdmlib webapp
#4073 Add jetty server dependencies
#4073 Add stop start possibility for server
#4073 Add functionality to control ...
Cherian Mathew
03:05 PM Revision eee9b39a (cdmlib): Refactored import return type from boolean to ImportResult
Patrick Plitzner
03:05 PM Revision 1ae59e40 (cdmlib): Move import report to import state super class
Patrick Plitzner
03:01 PM Revision fe33102c (cdmlib): #4313 introducing AgentPortalController
Andreas Kohlbecker
03:01 PM Revision 798120f1 (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
Andreas Kohlbecker
03:01 PM Revision 33b73396 (cdmlib): using long value for count in pager & easier access to utilty method
Andreas Kohlbecker
02:40 PM Revision a13b35df (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
02:39 PM Revision 07655893 (taxeditor): minor
Katja Luther
02:35 PM Revision f04ebb2b (taxeditor): Update eclipse compile / runtime to JavaSE-1.7
Conflicts:
eu.etaxonomy.taxeditor.application/.classpath
Cherian Mathew
02:31 PM Revision d0a4b949 (taxeditor): fixing #4808
Katja Luther
02:28 PM Revision ae1c072d (taxeditor): #4073 Add error callback for CDM Server start
Cherian Mathew
01:25 PM Revision c290a960 (cdmlib): minor
Katja Luther
01:24 PM Revision 27b69718 (cdmlib): fix merge description into another description
Katja Luther
12:49 PM Revision 42bbaccb (cdm-dataportal): Reorganize dataportal css
Patrick Plitzner
12:37 PM Revision 24b8816f (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
12:36 PM Revision c1c463d7 (taxeditor): fix move whole description to another description and adding delete configurator to bulk editor
Katja Luther
10:38 AM Revision 8f065066 (taxeditor): Move "link with taxon selection" action to main toolbar
Patrick Plitzner
09:30 AM Revision 2d885c52 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
U-BGBM\k.luther
09:30 AM Revision 7548e4de (cdmlib-apps): minor
U-BGBM\k.luther
08:11 AM Revision d8af4f9e (taxeditor): Remove report configuration from ABCD import wizard
Patrick Plitzner
08:08 AM Revision bda3782e (taxeditor): Show report text dialog after finishing import
Patrick Plitzner

11/13/2015

06:48 PM Revision 8c244d13 (taxeditor): #4073 Add webapp to editor project and fix file location issue
Cherian Mathew
05:27 PM Revision dcfe621d (taxeditor): #4073 Fix incorrect stop behaviour, Add mysql jdbc connector jar
Cherian Mathew
04:37 PM Revision 5111c428 (taxeditor): #4073 Simplify manged server ui
Cherian Mathew
03:16 PM Revision b0ca9585 (cdmlib-apps): Update app-import application contexts to work with spring-security 4
#4716 Andreas Müller
03:15 PM Revision 1542dee5 (cdmlib-apps): Import references as taxon descriptions in FauEu
* Until now they were imported as name descriptions Andreas Müller
02:34 PM Revision 32bfa802 (taxeditor): #4073 Add start / stop methods for managed server
Cherian Mathew

11/12/2015

06:51 PM Revision 7c932bae (taxeditor): #4073 Add functionality to control managed server in login dialog
Cherian Mathew
05:45 PM feature request #3742: Display altitude, distance to Ground and watersurface correctly in dataportal
display fixed by r26394 74ee6b5
Andreas Kohlbecker
05:43 PM Revision c08f7882 (cdm-dataportal): avoiding display of 'Exact location' for empty Point data
Andreas Kohlbecker
05:25 PM Revision 74ee6b54 (cdm-dataportal): #3742 displaying altitude, distance to Ground and watersurface correctly with ranges
Andreas Kohlbecker
04:36 PM Revision 5e2ad9e7 (taxeditor): #4073 Add stop start possibility for server
Cherian Mathew
03:35 PM Revision 07c6e912 (cdmlib): #2273 removing HACK: hardcoded distribution status colors for cyprus a no longer needed
Andreas Kohlbecker
03:35 PM Revision a3840b75 (cdmlib): removing obsoltete version definition in submodule pom.xml
Andreas Kohlbecker
03:19 PM Revision ea6faa96 (taxeditor): #4073 Add jetty server dependencies
Cherian Mathew
03:15 PM Revision 02b54e8c (taxeditor): Update eclipse compile / runtime to JavaSE-1.7
Cherian Mathew
11:02 AM task #5375 (In Progress): cdm-server without jsvc
jsvc is used to start the cdm-server as daemon. Jetty 8 is however no longer using jsvc it is using the [apache commo... Andreas Kohlbecker

11/11/2015

05:03 PM Revision d2ea9779 (taxeditor): Convert DerivateView to an EditorPart
Patrick Plitzner
04:45 PM feature request #4383: multiple issues with de-duplication of references in bibliography
detaching from parent ticket #4314
Andreas Kohlbecker
04:13 PM Revision 700c724c (taxeditor): #4073 Add new project for lanuching embedded jetty server using cdmlib webapp
Cherian Mathew
01:38 PM Revision 06a6dcf1 (taxeditor): Fix association creation
Patrick Plitzner
01:38 PM Revision 5403b045 (taxeditor): Remove unused class
Patrick Plitzner
11:07 AM Revision b92b3235 (taxeditor): Merge branch 'develop' into unify_derivative_views
Patrick Plitzner
10:38 AM Revision 2ae69503 (cdmlib): Add orphanRemoval to SingleReadAlignment set of Sequence #5200
Patrick Plitzner

11/10/2015

06:39 PM Revision d0e973da (taxeditor): Add flag for displaying choose action in name details view #5260
Patrick Plitzner
06:02 PM bug #5371 (Worksforme): all name parts of taxa with flag doubtful = true are displayed in italic
tested at the taxon "Crepis heterophylla" in the cichoriae production database.
The taxon which has been set dou...
Andreas Kohlbecker
05:11 PM Revision c7f2a478 (utis-core): fixing bug regarding writing the last updated timestamp and writing also a log of timestamps
Andreas Kohlbecker
04:15 PM Revision df5f4832 (taxeditor): Fix possible NPE #4850
Patrick Plitzner
03:23 PM feature request #4716 (In Progress): Other dependencies to be updated
Andreas Müller
03:20 PM Revision 8a6a41cd (taxeditor): Fix link to default handler #5155
Patrick Plitzner
02:32 PM Revision 168cc689 (taxeditor): minor
Katja Luther
12:40 PM Revision f2fdced6 (cdmlib): Add UUID delete method to occurrence service #5200
Patrick Plitzner
12:40 PM Revision e21e3b88 (taxeditor): Adapt to service changes #5200
Patrick Plitzner
12:34 PM Revision 6aa0af63 (cdmlib): fixing #5303
Katja Luther
12:30 PM Revision 1b12bb24 (cdmlib): fixing #5303
Katja Luther
11:56 AM Revision 3d8401d8 (cdmlib): Fix sequence and single read deletion #5200
- adapted tests Patrick Plitzner
11:56 AM Revision b122f530 (cdmlib): Add test for deleting SingleRead that is attached to multpile seuqences
#5200 Patrick Plitzner
11:56 AM Revision 455c5da0 (cdmlib): Set singleRead to null when removing SingleReadAlignment from sequence
to avoid "object would be re-saved" #5200 Patrick Plitzner
11:56 AM Revision b9e5fce5 (cdmlib): added DAO for SingleReads #5200
Patrick Plitzner
11:56 AM Revision c1a0b171 (cdmlib): Added test for taxon (name) <-> specimen association
Patrick Plitzner
10:34 AM Revision cf307878 (taxeditor): fixing #5319
Katja Luther
10:26 AM Revision 50569a3a (taxeditor): fixing #5319
Katja Luther
09:41 AM Revision 47ff0a08 (cdmlib): Revert "accept the change from a number to null in TimePeriod fields #5319"
This reverts commit a3960fa7c279f2aa9fafbefde098c529e269d382. Katja Luther
09:31 AM Revision c12b01cf (taxeditor): fixing #5115
Katja Luther

11/09/2015

12:22 PM Revision ef3f69eb (cdmlib): clean up csvNameExport
Katja Luther

11/06/2015

02:59 PM Revision 30d46a8d (utis-core): taxonomic status to accepted of accpted taxa in ENUS Client
Andreas Kohlbecker
02:57 PM Revision bca87cc0 (utis-core): taxonomic status to accepted of accpted taxa in ENUS Client
Andreas Kohlbecker
02:47 PM Revision cc711751 (utis-core): adding further missing data in ENUS Client
Andreas Kohlbecker
02:33 PM Revision c65ac449 (utis-core): fixing accordingTo literal for EUNIS_Client
Andreas Kohlbecker
02:00 PM Revision a3a844d8 (utis-core): removing unused classes
Andreas Kohlbecker
01:47 PM Revision 957d636b (utis-webapp): adding eunis as default value to the provider list
Andreas Kohlbecker
01:45 PM Revision 9b7fa6fb (utis-core): fixing query processing of EUNIS_Client which no longer has subchecklists
Andreas Kohlbecker
12:58 PM Revision ac912ef3 (utis-webapp): renaming EEA_BDC_Client to EUNIS client
Andreas Kohlbecker
12:55 PM Revision 7bfc9507 (utis-core): renaming EEA_BDC_Client to EUNIS client and removing subchecklist since this makes not much sense with this provider
Andreas Kohlbecker

11/05/2015

02:55 PM Revision e898ed12 (cdmlib): fixing cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/FeatureNodeDeletionConfigurator.java
Katja Luther
02:54 PM Revision f682ffdd (taxeditor): fixing #5341
Katja Luther
12:20 PM bug #4915 (Resolved): Abbrev title for person should never be orange
fixing with r26363
Katja Luther
12:19 PM bug #4944 (Resolved): "Protected" indication for references needs to be improved
adapted the colouring for all cache relevant parts (taxon, name, reference r26363)
@AM: Please have a look if everyt...
Katja Luther
12:12 PM Revision d812f38a (taxeditor): fixing #5341 and colouring for cache relevant fields #4915 and #4944
Katja Luther
12:09 PM Revision 3db5c325 (cdmlib): fix #5341 and fixing deletion of specimen
Katja Luther
12:09 PM Revision c9c3a2a4 (cdmlib): new nodeDeletionConfiguator to fit for taxonnode and feature node deletion
Katja Luther

11/04/2015

09:23 AM Revision 4e247b36 (cdm-dataportal): .gitignore
Andreas Kohlbecker
09:23 AM Revision 10055120 (cdm-dataportal): typo
Andreas Kohlbecker
09:23 AM Revision 0ed08d92 (cdm-dataportal): configuring new pom.xml for selenium tests and starting to adapt the headless-maven-tests.sh script
Andreas Kohlbecker
09:23 AM Revision 5cd83b6e (cdm-dataportal): moving test folder to project root
Andreas Kohlbecker

11/03/2015

04:15 PM Revision a0bbccce (cdm-dataportal): Fix some labels
Patrick Plitzner
11:59 AM Revision 612d9ce9 (cdmlib): Evaluate publish flag in portal controller
Patrick Plitzner
11:10 AM Revision eeef091f (cdmlib): Return type designations with associated taxa
Patrick Plitzner
11:07 AM Revision 4696db41 (cdmlib): Fix return type
Patrick Plitzner
08:48 AM Revision b82f869a (taxeditor): Fix type designation filter for derivative search
Patrick Plitzner
08:26 AM Revision c97430d7 (taxeditor): Fix label type info
Patrick Plitzner
07:57 AM Revision c8f76ae5 (taxeditor): Add type infop to derived unit label
Patrick Plitzner

11/02/2015

10:54 PM Revision 24d80857 (utis-client): instruction on how to use
Andreas Kohlbecker
06:41 PM Revision 8830229b (taxeditor): Do not expand type designation section automatically
Patrick Plitzner
06:12 PM Revision 07929589 (taxeditor): Remove types from taxon associations detail element
Patrick Plitzner
06:10 PM Revision db98babc (taxeditor): Initialize TypeDesignationSection
Patrick Plitzner
05:04 PM Revision d21a66e3 (taxeditor): Inherit from abstract type designation element
- label fix Patrick Plitzner
04:17 PM Revision 31f49547 (taxeditor): Remove extra remoting code
Patrick Plitzner
04:10 PM Revision eb9a2f74 (taxeditor): Hide SearchBar when linking to taxon editor
Patrick Plitzner
04:08 PM Revision e3b2b220 (utis-client): simple test implementetd
Andreas Kohlbecker
03:55 PM Revision 5947df8a (utis-client): using mustache template to add deployment descriptor to the final client pom.xml
Andreas Kohlbecker
03:10 PM Revision 368b5186 (utis-client): client api generation working
Andreas Kohlbecker
03:03 PM Revision 06f32144 (utis-webapp): ClassificationMixIn removed - it is now longer required since the tnr message model has changed
Andreas Kohlbecker
03:01 PM Revision f089f86e (taxeditor): Fix some labels and handle toggle states
Patrick Plitzner
02:59 PM Revision 3e617a49 (utis-core): model changes: TaxonName.fullName -> scientificName; Classification now is ordered list of HigherClassificationElements
Andreas Kohlbecker
02:42 PM Revision af0c6587 (taxeditor): Fix exception when using DerivativeEditor when no "real" RCP editor is
avtice Patrick Plitzner
02:11 PM Revision b99ebb39 (taxeditor): Merge branch 'develop' into unify_derivative_views
Conflicts:
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/detail/DetailsViewer.java
Patrick Plitzner
01:54 PM Revision 4a1ab701 (cdmlib): #5318
Katja Luther
11:49 AM Revision 4b61c2b2 (taxeditor): Add type designation collection elemetn to derived unit details view
Patrick Plitzner
09:33 AM Revision d85f4cfb (taxeditor): minor
Katja Luther
09:30 AM Revision 644a2d26 (taxeditor): #5325
Katja Luther

10/30/2015

11:01 PM Revision fb854eb9 (utis-client): new approach whereas the client generation is triggered via a bash script
Andreas Kohlbecker
06:17 PM Revision b907a74a (utis-client): first draft for an project to automatically create a client api to utis
Andreas Kohlbecker
04:53 PM Revision 015c50f8 (utis-webapp): Installation instructions
Andreas Kohlbecker
04:51 PM Revision 6cbbdab3 (utis-core): flexible selection of utis.home folder for development and production mode
Andreas Kohlbecker
04:31 PM Revision cc7c531b (taxeditor): #5297 Implement client side remoting progress monitor feedback mechanism, Add test for monitor feedback timeout
#5297 Add test for monitor feedback timeout Cherian Mathew
04:30 PM Revision ac7c4c35 (cdmlib): #5297 Move monitor thread api to super interface, Implement monitor feedback timeout
#5297 Add monitor feedback timeout, Cleanup code Cherian Mathew
03:41 PM Revision d83d37cd (utis-webapp): using version 1.2.0-SNAPSHOT of utis-core
Andreas Kohlbecker
03:40 PM Revision 8055278c (utis-core): utis.home folder the location for sore data adapts to system environment
Andreas Kohlbecker
03:11 PM Revision 0684526c (utis-webapp): modifications in logging
Andreas Kohlbecker
03:10 PM Revision 2322a6bc (utis-webapp): fixing bug which prevented from finding ClientClasses
Andreas Kohlbecker
03:09 PM Revision c2b0dfd0 (utis-webapp): using utis-core 1.1.2 and adding comment regarding remote debugging
Andreas Kohlbecker
03:06 PM Revision 3a7bfc4b (utis-core): setting version to 1.2.0-SNAPSHOT for dev branch
Andreas Kohlbecker
03:06 PM Revision 1f4c2592 (utis-core): Merge tag '1.1.2' into develop
release tag 1.1.2 Andreas Kohlbecker
03:05 PM Revision 5bcc9e8f (utis-core): Merge branch 'release/1.1.2'
Andreas Kohlbecker
03:05 PM Revision 7e368459 (utis-core): setting release version in pom.xml to 1.1.2
Andreas Kohlbecker
02:53 PM Revision 2f6e2fa2 (utis-core): commenting test for TDBStore
Andreas Kohlbecker
02:51 PM Revision 23014753 (utis-core): completely removing all apache jena dependencies, keeping TDBStore.java as TDBStore.java.hidden
Andreas Kohlbecker
02:49 PM Revision 96693562 (utis-core): completely removing all apache jena dependencies, keeping SparqlClient.java as SparqlClient.java.hidden
Andreas Kohlbecker
10:16 AM Revision 1676c012 (cdmlib): Add datasource for unit tests to launch configuration
Cherian Mathew
12:00 AM Revision 96b0307e (utis-webapp): configurtion logging
Andreas Kohlbecker
12:00 AM Revision 83f0a3ee (utis-webapp): updating to utis-core 1.1.1
Andreas Kohlbecker

10/29/2015

11:59 PM Revision 7d0da716 (utis-webapp): ignoring broken GBIF client
Andreas Kohlbecker
11:41 PM Revision 9af3f6af (utis-core): reverting pom version back to 1.2.0-SNAPSHOT
Andreas Kohlbecker
11:40 PM Revision 834f97d5 (utis-core): Merge tag '1.1.1' into develop
release tag 1.1.1 Andreas Kohlbecker
11:39 PM Revision aeabe587 (utis-core): Merge branch 'release/1.1.1'
Andreas Kohlbecker
11:39 PM Revision caad6632 (utis-core): setting pom to hotfix release version 1.1.1
Andreas Kohlbecker
11:38 PM Revision deeccd97 (utis-core): better detection of synonyms to avoid adding the accepted taxon as its own synonym
Andreas Kohlbecker
11:36 PM Revision 5909ec82 (utis-core): disabling automatic execution of the jaxb2 maven plugin
Andreas Kohlbecker
06:34 PM Revision 7ec48af1 (utis-core): bumping development version to 1.2.0-SNAPSHOT
Andreas Kohlbecker
06:28 PM Revision 837b04ac (utis-core): Merge tag '1.1.0' into develop
release 1.1.0 Andreas Kohlbecker
06:27 PM Revision d022bdb6 (utis-core): Merge branch 'release/1.1.0'
Andreas Kohlbecker
06:27 PM Revision 77a2b636 (utis-core): setting project version for release to 1.1.0
Andreas Kohlbecker
06:22 PM Revision 97b8da2f (utis-core): avoiding NPE
Andreas Kohlbecker
06:22 PM Revision 8c4ea30c (utis-core): fixing probelm in genus_test
Andreas Kohlbecker
06:20 PM Revision 37817d9f (utis-core): adding taxon url to result
Andreas Kohlbecker
06:01 PM Revision c1e4fe4e (utis-core): resetting CHECK_UPDATE_MINUTES to once a day & fixing missing subchecklistInfo in responses of the EEA_BDC_Client
Andreas Kohlbecker
05:46 PM Revision 79ec3c00 (taxeditor): Fix test by catching expected exception
Cherian Mathew
05:44 PM Revision 162c502c (utis-core): removing useless tests
Andreas Kohlbecker
05:27 PM Revision 50781539 (utis-core): easier switching between rdf download locations & adding support for genus resolution
Andreas Kohlbecker
05:01 PM Revision 4c4e93bd (taxeditor): Add logs
Cherian Mathew
04:58 PM Revision a179ac89 (taxeditor): #5297 Implement monitor feedback, Add corresponding tests
#5297 Add inconsistent monitor feedback test Cherian Mathew
04:55 PM Revision eeedb131 (cdmlib): #5297 Make result, feedback objects in remoting monitor serializable, Update test service with monitor feedback
Cherian Mathew
04:07 PM Revision c520990d (utis-webapp): following the changes in utis-core, using now the ClientFactory
Andreas Kohlbecker
04:04 PM Revision 4a13ca5f (utis-core): implementation of a manager for neo4j stores, the ClientManager has been turned into ClientFactory
Andreas Kohlbecker
02:32 PM Revision a014602f (utis-core): cration of a ClientManager to provide quasi singleton beans if client classes
Andreas Kohlbecker
01:40 PM Revision 2edbd588 (taxeditor): Pre-select classification for remote moving operations
Patrick Plitzner
01:32 PM Revision ea3b1f1c (taxeditor): Fix possible NPE and widget disposed exception
Patrick Plitzner
12:59 PM Revision ed818f5d (cdmlib): Fix NPE in test
Patrick Plitzner
11:25 AM Revision 954f2633 (utis-webapp): last adaption to changes in the project name and structure in drf-workflow which is now utis-core
Andreas Kohlbecker
11:10 AM Revision 8f96bb65 (taxeditor): Remove identifier and taxon associations from bulk editor details view
- reduce space taken by taxon associaton section #5348 Patrick Plitzner
11:10 AM Revision 4fdd8520 (taxeditor): Show taxon associations only when they exist
Patrick Plitzner
11:04 AM Revision c87762cf (taxeditor): Handle image loading
- add label to indicate that image was not found
- refactored code
Patrick Plitzner
11:04 AM Revision a644d73a (taxeditor): Add image preview to media simple view
Patrick Plitzner
11:04 AM Revision 96755ebc (taxeditor): Trim code
Patrick Plitzner
10:40 AM Revision cc872960 (utis-core): automatic updating of the eea rdf data implemented (poll interval at 1 minute for testing)
Andreas Kohlbecker
10:40 AM Revision b142d49c (utis-core): automatic updating of the eea rdf data implemented (poll interval at 1 minute for testing)
Andreas Kohlbecker
10:37 AM feature request #5366: Implement less strict check for compatibility between taxeditor and target cdmserver
Added a preference to disable the timestamp check (r26316) and allow the taxeditor to connect to cdmservers with the ... Cherian Mathew
10:31 AM feature request #5366 (New): Implement less strict check for compatibility between taxeditor and target cdmserver
Following the implementation of #5302, it may be required to ease the restrictions for certain scenarios e.g. if deve... Cherian Mathew
10:35 AM Revision 54fc44a1 (taxeditor): #5366 Add preference for disabling services api timestamp check
Cherian Mathew
10:33 AM Revision b20c081f (utis-webapp): adapting to changes in the project name and structure in drf-workflow which is now utis-core
Andreas Kohlbecker
 

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