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From 10/27/2015 to 11/25/2015

11/25/2015

06:48 PM bug #5250 (Resolved): Derivate search is slow
Assigning for review of the performance and also to check if the other use-cases (taxon selection, etc) still work fi... Cherian Mathew
06:46 PM bug #5250: Derivate search is slow
Another main cause of performance issues is the
~~~
listTypeDesignations
~~~
call in the DerivateLabelProvider cla...
Cherian Mathew
06:42 PM bug #5250: Derivate search is slow
The main reason for the performance is the remote loading of each derivate (using its uuid) even after the entire lis... Cherian Mathew
06:33 PM Revision 6bfd2385 (taxeditor): #5250 Refactor code for improving derivate search performance
Cherian Mathew
06:31 PM Revision 335bbd17 (taxeditor): Implement new load method for uuid lists
Cherian Mathew
06:31 PM Revision fbedbcd2 (cdmlib): Add load method for uuid lists
Cherian Mathew
02:42 PM feature request #4021 (New): H2 running in Server mode
Andreas Müller
02:41 PM feature request #4021 (Feedback): H2 running in Server mode
Can't see that this is an exact duplicate for #4073. However, move it to unassigned for further discussion
Andreas Müller
02:37 PM feature request #5396 (New): User interface to create a Remote Source
split from #4193
Andreas Müller
01:57 PM feature request #4716: Other dependencies to be updated
Stacktrace for above error is:
~~~
org.hibernate.HibernateException: could not reassociate uninitialized transient ...
Andreas Müller
01:50 PM feature request #4716: Other dependencies to be updated
Hallo Katja,
nach dem dependency upgrade bekomme ich ein Problem mit der Methode DescriptionServiceImplTest.testMov...
Andreas Müller
11:18 AM Revision bd70ceb2 (cdmlib): Set Unit/Notes and Gathering/Notes in ABCD import #5168
Patrick Plitzner
07:44 AM Revision f16eafb5 (cdmlib): Import missing parameters for ggbn ABCD import
- some refactoring Patrick Plitzner

11/24/2015

05:29 PM Revision 21ce1d0d (taxeditor): Revert update handler to earlier version
Cherian Mathew
04:03 PM Revision e8081706 (cdmlib): Fix import for max elevation
Patrick Plitzner
03:55 PM Revision 088ea145 (cdmlib): #4716 temporarily making 3 fieldnames lowercase to prevent from trouble with new hibernate naming strategy, needs to be reverted later, see #5369
Andreas Kohlbecker
03:12 PM Revision 90634148 (cdmlib): Minor
Andreas Müller
03:03 PM Revision e8ce1472 (cdmlib): Upgrade from aspectj 1.7.4 to 1.8.7 #4716
Andreas Müller
03:03 PM Revision 4e79c4bf (cdmlib): Minor generics changes for TcsXmlExport
Andreas Müller
02:20 PM Revision 5bb64b9f (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
02:19 PM Revision f512d3f1 (taxeditor): add delete configurator dialog for taxa and names bulkeditor
Katja Luther
02:14 PM Revision 5830445c (cdmlib): #4716 upgrading maven jetty plugin to latest, requires java 1.8
Andreas Kohlbecker
02:02 PM Revision 6b462070 (taxeditor): Move to simpler update process
Cherian Mathew
01:42 PM Revision f4f067bc (cdmlib): add the missing files
Katja Luther
01:18 PM Revision 946bbfb5 (cdmlib): Remove spring version from remote-webapp pom #4716
Andreas Müller
12:45 PM bug #5104 (Resolved): prevent MarkerTypes from being deleted when there are Marker entities using that type
test fixed r26650
Katja Luther
12:44 PM Revision ea969fcb (cdmlib): fix the term delete test
Katja Luther
12:05 PM bug #5394 (Rejected): Test if synonyms are imported correctly with ABCD import
split from #3509, for details see comments there
Patrick Plitzner
12:01 PM Revision c7a2c22e (taxeditor): Add repo URIs to update operation
Cherian Mathew
11:35 AM Revision 5e4f7643 (cdmlib): Update some more hibernate mapping nameings #4716 and #5369
Andreas Müller
11:15 AM Revision 1b592dc6 (taxeditor): change message if convert person 2 team is not possible #5272
Katja Luther
10:56 AM bug #5250 (In Progress): Derivate search is slow
Cherian Mathew
10:15 AM Revision d2274a1b (taxeditor): fix #4878
Katja Luther
09:44 AM Revision f4352549 (cdmlib): add LIKE to MatchMode #5391
Katja Luther
09:19 AM Revision 4043da12 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther

11/23/2015

06:14 PM Revision 7d743a99 (taxeditor): Remove eclipse env check
Cherian Mathew
05:34 PM Revision b645428a (taxeditor): Simplify update process
Cherian Mathew
05:24 PM Revision c55a96d8 (cdmlib): Move from hibernate-search to hibernate-search-orm #4716
Andreas Müller
05:23 PM Revision b2a91269 (cdmlib): #4716 upgrading spring xsd schema version to 4.0
Andreas Kohlbecker
05:07 PM Revision 763e9e67 (cdmlib): Cleanup
Cherian Mathew
05:06 PM Revision d153399a (taxeditor): Cleanup
Cherian Mathew
04:59 PM Revision a7d59765 (taxeditor): Correct update operation initialisation
Cherian Mathew
04:31 PM Revision 67fc6d9b (taxeditor): #5282 Use null session in referencing objects view
Cherian Mathew
04:29 PM Revision eedeeaee (taxeditor): #5160 Use new merge methods with uuids as parameters
Cherian Mathew
04:13 PM Revision 3e15b995 (cdmlib): Set failing DescriptionService test preliminary to ignore #4716
Andreas Müller
04:13 PM Revision a3a90b7c (cdmlib): Upgrade to hibernate 5.0.4 #4716
from 5.0.3 Andreas Müller
04:13 PM Revision 58136b31 (cdmlib): Fix upgrade issues after rebase #4716
Andreas Müller
04:13 PM Revision f5e0f43a (cdmlib): Add jta to pom to fix exception coming with hibernate 5.0.4 #4716
Andreas Müller
04:13 PM Revision eec2d79d (cdmlib): Fix issues after rebase #4716
Andreas Müller
04:13 PM Revision 975a7d74 (cdmlib): Fix compile issues after rebase #4716
Andreas Müller
04:13 PM Revision 515da9f2 (cdmlib): Add some more gitignore and comment ignore TaxonSearchTest #4716
Andreas Müller
04:13 PM Revision c5041b33 (cdmlib): Upgrading to srping 4.2.3, jodatime 2.9.1 and commons-collections 3.2.2
#4716 Andreas Müller
04:13 PM Revision b0865b1a (cdmlib): Remove dbunit dependency #4803
Andreas Müller
04:13 PM Revision 261f7549 (cdmlib): Update to hibernate 5 for cdmlib-remote and pring (no changes) #4716
Andreas Müller
04:13 PM Revision 8c34728e (cdmlib): Update to hibernate 5 for cdmlib-io #4716
Andreas Müller
04:13 PM Revision 69f17e7e (cdmlib): update gitignore
Andreas Müller
04:13 PM Revision 2638be38 (cdmlib): migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
* (except for hibernate search tests)
* including new spring-config structure
Andreas Müller
04:13 PM Revision 398bcf3e (cdmlib): Adapt cdmlib-persistence to new testing architecture #5370
Andreas Müller
04:13 PM Revision 53c8f824 (cdmlib): Add first version of cdmlib-test #5370
Andreas Müller
04:13 PM Revision 3dd6c00e (cdmlib): Upgrade to hibernate 5 with persistence tests running #4716
Andreas Müller
04:10 PM Revision b2639c6c (cdmlib): Fix all compile errors from services to remote (some only preliminary)
#4716 Andreas Müller
04:10 PM Revision c6a3dcb1 (cdmlib): Remove MultCollector class #4716
The original is now available through lucene 4.10 Andreas Müller
04:10 PM Revision 2622a38b (cdmlib): Further adapt to new jackson and new lucene version #4716
Andreas Müller
04:10 PM Revision 442f6aca (cdmlib): Hibernate, lucene and search upgradet to 4.3.11, 4.10.4 and 5.2.1 #4716
Only compiling, test not running due to leak in connection pooling for
tests
Andreas Müller
04:10 PM Revision 1f9b3225 (cdmlib): Some cleanups in hibernate user types
Andreas Müller
04:10 PM Revision 68573bd1 (cdmlib): Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702 Andreas Müller
04:10 PM Revision 21d1be03 (cdmlib): Fix bug for embeddable classes in AdvancedBeanInitializer #5383
Andreas Müller
04:10 PM Revision d49d676a (cdmlib): Fix associated specimen retrieval for name determination
- added test Patrick Plitzner
04:10 PM Revision 0fd0248b (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
Andreas Kohlbecker
04:10 PM Revision 95364eb4 (cdmlib): Added test for taxon (name) <-> specimen association
Patrick Plitzner
04:10 PM Revision a89899fb (cdmlib): fix #5341 and fixing deletion of specimen
Katja Luther
04:10 PM Revision 30a8e44b (cdmlib): removing commented testcases which are broken in spring 4 and unused in the cdm remote controllers
Andreas Kohlbecker
04:10 PM Revision ff8cf355 (cdmlib): Upgrade batik and c3p0 #4716
Andreas Müller
04:10 PM Revision 71e146f7 (cdmlib): Upgrade jaxb version and to new glassfish implementation and more spring
cleanup #4716 Andreas Müller
04:10 PM Revision 8a386b2c (cdmlib): Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702 Andreas Müller
04:02 PM Revision 8577462c (cdmlib): Reduce jena-tdl from 3.0.0. to 1.1.2 for now #4716
Andreas Müller
04:02 PM Revision 73e76701 (cdmlib): Update dependency versions for further dependencies #4716
commons-logging, commons-codec, jboss-logging, jena-tdb,
commons-beanutils, joda-time, ehcache-core, Saxon-HE,
hibern...
Andreas Müller
04:02 PM Revision e3562a7b (cdmlib): Update simple dependency versions #4716
httpcomponents, doxia, poi, jackson, slf4j, aspectjrt + weaver, wsdl4j,
guava, jaxen, xstream, xom, jtds, mysql (rema...
Andreas Müller
04:02 PM Revision a8ad5297 (cdmlib): Remove jdom from cdmlib-print pom
Andreas Müller
04:02 PM Revision 423460e5 (cdmlib): Update jdbc-driver versions #4716
Andreas Müller
04:02 PM Revision 27bb7378 (cdmlib): Upgrade hibernate3 maven plugin and ant plugin versions and dependencies
#4716 Andreas Müller
04:02 PM Revision 718b436c (cdmlib): Add spring-context to cdmlib-model
Andreas Müller
04:02 PM Revision 411b2214 (cdmlib): Change springframework to spring in persistence #4702
Andreas Müller
04:02 PM Revision cb57fc9c (cdmlib): Fix spring-jdbc dependency
Andreas Müller
04:02 PM Revision 44a80e96 (cdmlib): Add jdom2
Andreas Müller
04:02 PM Revision 629e7bc8 (cdmlib): Change from springframework to spring in parent-pom #4702
Andreas Müller
04:02 PM Revision 93c283c9 (cdmlib): Change from springframework to spring in cdmlib-io and -remote #4702
Andreas Müller
04:02 PM Revision 9542db61 (cdmlib): Remove spring-framework test dependency from cdmlib-services #4702
Andreas Müller
04:02 PM Revision 23e27cfd (cdmlib): Change springframework to spring in cdmlib-model #4702
Andreas Müller
04:01 PM Revision 2fb183d7 (cdmlib): Change springframework to spring in cdmlib-commons
Andreas Müller
03:38 PM Revision 1bb7e5ef (taxeditor): Add info dialog when no updates available
Cherian Mathew
03:21 PM bug #5048: cdm-server causes unusual high native memory consumption for jvm
Replying to [[comment6|a.kohlbecker]]:
> Just an Idea: Could this be related to the jsvc process which is starting t...
Andreas Kohlbecker
02:38 PM Revision d74e55d1 (cdmlib): #5338 Check monitor map for null key when getting value
Cherian Mathew
01:32 PM Revision cea412e7 (cdm-dataportal): fixing bug introduced by d9763fd
Andreas Kohlbecker
01:03 PM Revision b00a4a66 (taxeditor): Move update checks from P2Util to UpdateHandler
Cherian Mathew
12:08 PM Revision c77da3e3 (cdm-dataportal): updating layer data for the 'ETOPO1 Global Relief Model'
Andreas Kohlbecker
11:41 AM Revision 5006b30c (taxeditor): Generate metadata service without the authentication executor
Cherian Mathew
10:39 AM Revision d02ff6c0 (taxeditor): Revert cached services map to be local to configuration class
Cherian Mathew

11/20/2015

06:47 PM Revision 2061b426 (taxeditor): #5000 Fix typo error
Cherian Mathew
06:47 PM Revision fc09bcdb (taxeditor): #5000 Use new metadata service
Cherian Mathew
06:45 PM Revision c2cac51d (cdmlib): #5000 Add new metadata service
Cherian Mathew
02:23 PM bug #4962: improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
I think we can close this ticket since no further improvement is possible without solving #5387
Andreas Kohlbecker
02:06 PM bug #4962 (Resolved): improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
Improvements implemented:
* f36a078 [r26575 commenting performance measure print-out via Systemerr|* 256c8f8 r26574...
Andreas Kohlbecker
02:22 PM feature request #5387 (New): Completely avoid all cache strategies during read operations
The cdm make use of `CacheStrategies` in order to update titelCaches and taggedTitles of Taxa, Names, Authors, Refere... Andreas Kohlbecker
02:04 PM Revision f36a0784 (cdmlib): #4962 commenting performance measure print-out via System.err
Andreas Kohlbecker
01:52 PM Revision 256c8f84 (cdmlib): #4962 avoiding bean initialization in getChildNodesAtRank() as much as possible - performance improvement
Andreas Kohlbecker
10:49 AM feature request #4021 (Duplicate): H2 running in Server mode
duplicate of #4073
Cherian Mathew

11/19/2015

11:14 PM bug #4962: improve portal/classification/{taxon_uuid}/childNodesAt/{rank_uuid} web service
results of more detailed performance measures. In the following log the time (ms) of specific parts of the whole proc... Andreas Kohlbecker
03:40 PM Revision b4503332 (cdm-dataportal): #5385 openlayers maps adapt to parent DOM element width and the map aspect ratio can be set instead of fixed width and height
Andreas Kohlbecker
11:16 AM Revision 34e5c415 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
11:15 AM Revision 07d015cb (taxeditor): fix #4878
Katja Luther
10:51 AM Revision ad401f08 (cdmlib): revert chamges in MatchMode
Katja Luther
10:44 AM Revision 6f126f71 (cdmlib): revert chamges in MatchMode
Katja Luther
10:36 AM feature request #4837: responsive layout & theme
c.ring wrote:
> modification of theme CSS for full responsiveness handed over to Tobias Gehroldt (MfN)
Caroline un...
Andreas Kohlbecker
10:14 AM Revision e97140ed (cdmlib-apps): minor
U-BGBM\k.luther
08:48 AM Revision 828f332d (cdmlib-apps): changes for vernacular names import
U-BGBM\k.luther

11/18/2015

04:10 PM Revision c1fef20a (cdm-dataportal): flexible size for list of taxa managed by experts
Andreas Kohlbecker
03:51 PM task #5384 (New): consider update to openlayers 3.x
Openlayers 3 has a lot of improvements over version 2:
* high-dpi support
* better vector rendering engine
...
Andreas Kohlbecker
03:34 PM Revision 5b5051a9 (cdm-dataportal): fixing name render template for related_taxon
Andreas Kohlbecker
03:10 PM Revision 541d252e (cdmlib): Fix typo
Patrick Plitzner
03:08 PM Revision bf90783c (cdm-dataportal): #4313 changing label
Andreas Kohlbecker
03:05 PM Revision 403ac024 (cdmlib): Extended test for specimens associations
Patrick Plitzner
03:04 PM Revision 4f10c48b (cdmlib): Remove unused parameters
Patrick Plitzner
12:25 PM Revision 572aa6d2 (cdmlib): Add test for all possible specimen associations
Patrick Plitzner
11:44 AM Revision d9763fd3 (cdm-dataportal): #4313 display of expert details complete and layout fine tuning done
Andreas Kohlbecker
11:44 AM Revision 7663cd0b (cdm-dataportal): #4313 first implementation of the taxon experts tab
Andreas Kohlbecker
10:57 AM feature request #5174: web services for experts implemented
additional changes:
* 887fec0 r26450 relationship type as additinal filter option for TaxonNodeAgentRelation servic...
Andreas Kohlbecker
10:27 AM feature request #5174: web services for experts implemented
for reviewing please take the following REST services into account:
* http://test.e-taxonomy.eu/cdmserver/fauna_euro...
Andreas Kohlbecker
10:56 AM Revision 887fec08 (cdmlib): #4313 relationship type as additinal filter option for TaxonNodeAgentRelation services
Andreas Kohlbecker

11/17/2015

06:51 PM Revision 5e251525 (taxeditor): Add determination info to DerivateLabelProvider
Patrick Plitzner
04:43 PM Revision db6dfacc (taxeditor): Add missing transient service method
Patrick Plitzner
04:34 PM Revision 76be242c (taxeditor): Simplify selectionChanged method
Patrick Plitzner
04:33 PM Revision 9de4bfe6 (taxeditor): Add icon to DerivateView context menu
Patrick Plitzner
04:32 PM Revision 550eeb6f (cdmlib): Add new service method listDerminationEvents to occurrence service which
lists all determination events that contain the given specimen Patrick Plitzner
04:32 PM Revision cc1e6737 (cdmlib): Check for names and synonymy when checking specimen determinations
Patrick Plitzner
04:32 PM Revision e6d7d39f (cdmlib): Add java doc
Patrick Plitzner
04:09 PM Revision 45a894e6 (cdmlib): Clean up BeanInitNode embeddable issues #5383
Andreas Müller
03:54 PM Revision cd02d8bd (cdmlib): Fix bug for embeddable classes in AdvancedBeanInitializer #5383
Andreas Müller
03:30 PM Revision 3aa5ea5e (taxeditor): Streamline search method due to cdmlib service changes
Patrick Plitzner
03:18 PM feature request #5174 (Resolved): web services for experts implemented
all implemented:
* b014351 [r26440 implementing full stack of methods to expose TaxonNodeAgentRelations …|* fe33102 ...
Andreas Kohlbecker
03:09 PM Revision b014351b (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations throught the AgentController with filter options
Andreas Kohlbecker
02:46 PM Revision 3dea8ed1 (cdmlib): fixing #4878
Katja Luther
01:46 PM Revision cbd1f119 (taxeditor): Add missing pluging dependency to feature.xml
Patrick Plitzner
01:32 PM Revision 22a3e273 (taxeditor): Adapt transient service to cdmlib changes
Patrick Plitzner
01:29 PM Revision 42f8ab76 (cdmlib): Fix associated specimen retrieval for name determination
- added test Patrick Plitzner
12:55 PM Revision 604df0ab (cdmlib): Fix copy&paste error
Patrick Plitzner
12:35 PM Revision 848d3f7d (cdmlib): Fix failing tests
- adapted to new return type Patrick Plitzner
11:47 AM Revision e6e5ebdc (cdmlib): Extend service methods to retrieve specimens that are determiined as a
taxon name Patrick Plitzner
10:50 AM Revision df85b8bf (cdmlib): When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations Patrick Plitzner
10:48 AM Revision fa2bd652 (cdmlib): Add javadoc
Patrick Plitzner

11/16/2015

05:13 PM Revision 279996e5 (taxeditor): Remove unused classpath entry
Patrick Plitzner
04:51 PM Revision a187717b (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
Patrick Plitzner
04:42 PM Revision 3387bfe5 (cdmlib): Remove failing legacy test
Patrick Plitzner
04:18 PM Revision 76c823c7 (taxeditor): Add toggle for "link with taxon selection" to context menu of
DerivativeEditor Patrick Plitzner
03:12 PM Revision 15202dd0 (taxeditor): Fix test environment for webapp test
Cherian Mathew
03:12 PM Revision 1c945ab8 (taxeditor): Ignore cdmlib war file
Cherian Mathew
03:11 PM Revision 7a96337f (taxeditor): #4073 Add new project for lanuching embedded jetty server using cdmlib webapp
#4073 Add jetty server dependencies
#4073 Add stop start possibility for server
#4073 Add functionality to control ...
Cherian Mathew
03:05 PM Revision eee9b39a (cdmlib): Refactored import return type from boolean to ImportResult
Patrick Plitzner
03:05 PM Revision 1ae59e40 (cdmlib): Move import report to import state super class
Patrick Plitzner
03:01 PM Revision fe33102c (cdmlib): #4313 introducing AgentPortalController
Andreas Kohlbecker
03:01 PM Revision 798120f1 (cdmlib): #4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers
Andreas Kohlbecker
03:01 PM Revision 33b73396 (cdmlib): using long value for count in pager & easier access to utilty method
Andreas Kohlbecker
02:40 PM Revision a13b35df (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
02:39 PM Revision 07655893 (taxeditor): minor
Katja Luther
02:35 PM Revision f04ebb2b (taxeditor): Update eclipse compile / runtime to JavaSE-1.7
Conflicts:
eu.etaxonomy.taxeditor.application/.classpath
Cherian Mathew
02:31 PM Revision d0a4b949 (taxeditor): fixing #4808
Katja Luther
02:28 PM Revision ae1c072d (taxeditor): #4073 Add error callback for CDM Server start
Cherian Mathew
01:25 PM Revision c290a960 (cdmlib): minor
Katja Luther
01:24 PM Revision 27b69718 (cdmlib): fix merge description into another description
Katja Luther
12:49 PM Revision 42bbaccb (cdm-dataportal): Reorganize dataportal css
Patrick Plitzner
12:37 PM Revision 24b8816f (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
Katja Luther
12:36 PM Revision c1c463d7 (taxeditor): fix move whole description to another description and adding delete configurator to bulk editor
Katja Luther
10:38 AM Revision 8f065066 (taxeditor): Move "link with taxon selection" action to main toolbar
Patrick Plitzner
09:30 AM Revision 2d885c52 (cdmlib-apps): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps
U-BGBM\k.luther
09:30 AM Revision 7548e4de (cdmlib-apps): minor
U-BGBM\k.luther
08:11 AM Revision d8af4f9e (taxeditor): Remove report configuration from ABCD import wizard
Patrick Plitzner
08:08 AM Revision bda3782e (taxeditor): Show report text dialog after finishing import
Patrick Plitzner

11/13/2015

06:48 PM Revision 8c244d13 (taxeditor): #4073 Add webapp to editor project and fix file location issue
Cherian Mathew
05:27 PM Revision dcfe621d (taxeditor): #4073 Fix incorrect stop behaviour, Add mysql jdbc connector jar
Cherian Mathew
04:37 PM Revision 5111c428 (taxeditor): #4073 Simplify manged server ui
Cherian Mathew
03:16 PM Revision b0ca9585 (cdmlib-apps): Update app-import application contexts to work with spring-security 4
#4716 Andreas Müller
03:15 PM Revision 1542dee5 (cdmlib-apps): Import references as taxon descriptions in FauEu
* Until now they were imported as name descriptions Andreas Müller
02:34 PM Revision 32bfa802 (taxeditor): #4073 Add start / stop methods for managed server
Cherian Mathew

11/12/2015

06:51 PM Revision 7c932bae (taxeditor): #4073 Add functionality to control managed server in login dialog
Cherian Mathew
05:45 PM feature request #3742: Display altitude, distance to Ground and watersurface correctly in dataportal
display fixed by r26394 74ee6b5
Andreas Kohlbecker
05:43 PM Revision c08f7882 (cdm-dataportal): avoiding display of 'Exact location' for empty Point data
Andreas Kohlbecker
05:25 PM Revision 74ee6b54 (cdm-dataportal): #3742 displaying altitude, distance to Ground and watersurface correctly with ranges
Andreas Kohlbecker
04:36 PM Revision 5e2ad9e7 (taxeditor): #4073 Add stop start possibility for server
Cherian Mathew
03:35 PM Revision 07c6e912 (cdmlib): #2273 removing HACK: hardcoded distribution status colors for cyprus a no longer needed
Andreas Kohlbecker
03:35 PM Revision a3840b75 (cdmlib): removing obsoltete version definition in submodule pom.xml
Andreas Kohlbecker
03:19 PM Revision ea6faa96 (taxeditor): #4073 Add jetty server dependencies
Cherian Mathew
03:15 PM Revision 02b54e8c (taxeditor): Update eclipse compile / runtime to JavaSE-1.7
Cherian Mathew
11:02 AM task #5375 (In Progress): cdm-server without jsvc
jsvc is used to start the cdm-server as daemon. Jetty 8 is however no longer using jsvc it is using the [apache commo... Andreas Kohlbecker

11/11/2015

05:03 PM Revision d2ea9779 (taxeditor): Convert DerivateView to an EditorPart
Patrick Plitzner
04:45 PM feature request #4383: multiple issues with de-duplication of references in bibliography
detaching from parent ticket #4314
Andreas Kohlbecker
04:13 PM Revision 700c724c (taxeditor): #4073 Add new project for lanuching embedded jetty server using cdmlib webapp
Cherian Mathew
01:38 PM Revision 06a6dcf1 (taxeditor): Fix association creation
Patrick Plitzner
01:38 PM Revision 5403b045 (taxeditor): Remove unused class
Patrick Plitzner
11:07 AM Revision b92b3235 (taxeditor): Merge branch 'develop' into unify_derivative_views
Patrick Plitzner
10:38 AM Revision 2ae69503 (cdmlib): Add orphanRemoval to SingleReadAlignment set of Sequence #5200
Patrick Plitzner

11/10/2015

06:39 PM Revision d0e973da (taxeditor): Add flag for displaying choose action in name details view #5260
Patrick Plitzner
06:02 PM bug #5371 (Worksforme): all name parts of taxa with flag doubtful = true are displayed in italic
tested at the taxon "Crepis heterophylla" in the cichoriae production database.
The taxon which has been set dou...
Andreas Kohlbecker
05:11 PM Revision c7f2a478 (utis-core): fixing bug regarding writing the last updated timestamp and writing also a log of timestamps
Andreas Kohlbecker
04:15 PM Revision df5f4832 (taxeditor): Fix possible NPE #4850
Patrick Plitzner
03:23 PM feature request #4716 (In Progress): Other dependencies to be updated
Andreas Müller
03:20 PM Revision 8a6a41cd (taxeditor): Fix link to default handler #5155
Patrick Plitzner
02:32 PM Revision 168cc689 (taxeditor): minor
Katja Luther
12:40 PM Revision f2fdced6 (cdmlib): Add UUID delete method to occurrence service #5200
Patrick Plitzner
12:40 PM Revision e21e3b88 (taxeditor): Adapt to service changes #5200
Patrick Plitzner
12:34 PM Revision 6aa0af63 (cdmlib): fixing #5303
Katja Luther
12:30 PM Revision 1b12bb24 (cdmlib): fixing #5303
Katja Luther
11:56 AM Revision 3d8401d8 (cdmlib): Fix sequence and single read deletion #5200
- adapted tests Patrick Plitzner
11:56 AM Revision b122f530 (cdmlib): Add test for deleting SingleRead that is attached to multpile seuqences
#5200 Patrick Plitzner
11:56 AM Revision 455c5da0 (cdmlib): Set singleRead to null when removing SingleReadAlignment from sequence
to avoid "object would be re-saved" #5200 Patrick Plitzner
11:56 AM Revision b9e5fce5 (cdmlib): added DAO for SingleReads #5200
Patrick Plitzner
11:56 AM Revision c1a0b171 (cdmlib): Added test for taxon (name) <-> specimen association
Patrick Plitzner
10:34 AM Revision cf307878 (taxeditor): fixing #5319
Katja Luther
10:26 AM Revision 50569a3a (taxeditor): fixing #5319
Katja Luther
09:41 AM Revision 47ff0a08 (cdmlib): Revert "accept the change from a number to null in TimePeriod fields #5319"
This reverts commit a3960fa7c279f2aa9fafbefde098c529e269d382. Katja Luther
09:31 AM Revision c12b01cf (taxeditor): fixing #5115
Katja Luther

11/09/2015

12:22 PM Revision ef3f69eb (cdmlib): clean up csvNameExport
Katja Luther

11/06/2015

02:59 PM Revision 30d46a8d (utis-core): taxonomic status to accepted of accpted taxa in ENUS Client
Andreas Kohlbecker
02:57 PM Revision bca87cc0 (utis-core): taxonomic status to accepted of accpted taxa in ENUS Client
Andreas Kohlbecker
02:47 PM Revision cc711751 (utis-core): adding further missing data in ENUS Client
Andreas Kohlbecker
02:33 PM Revision c65ac449 (utis-core): fixing accordingTo literal for EUNIS_Client
Andreas Kohlbecker
02:00 PM Revision a3a844d8 (utis-core): removing unused classes
Andreas Kohlbecker
01:47 PM Revision 957d636b (utis-webapp): adding eunis as default value to the provider list
Andreas Kohlbecker
01:45 PM Revision 9b7fa6fb (utis-core): fixing query processing of EUNIS_Client which no longer has subchecklists
Andreas Kohlbecker
12:58 PM Revision ac912ef3 (utis-webapp): renaming EEA_BDC_Client to EUNIS client
Andreas Kohlbecker
12:55 PM Revision 7bfc9507 (utis-core): renaming EEA_BDC_Client to EUNIS client and removing subchecklist since this makes not much sense with this provider
Andreas Kohlbecker

11/05/2015

02:55 PM Revision e898ed12 (cdmlib): fixing cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/config/FeatureNodeDeletionConfigurator.java
Katja Luther
02:54 PM Revision f682ffdd (taxeditor): fixing #5341
Katja Luther
12:20 PM bug #4915 (Resolved): Abbrev title for person should never be orange
fixing with r26363
Katja Luther
12:19 PM bug #4944 (Resolved): "Protected" indication for references needs to be improved
adapted the colouring for all cache relevant parts (taxon, name, reference r26363)
@AM: Please have a look if everyt...
Katja Luther
12:12 PM Revision d812f38a (taxeditor): fixing #5341 and colouring for cache relevant fields #4915 and #4944
Katja Luther
12:09 PM Revision 3db5c325 (cdmlib): fix #5341 and fixing deletion of specimen
Katja Luther
12:09 PM Revision c9c3a2a4 (cdmlib): new nodeDeletionConfiguator to fit for taxonnode and feature node deletion
Katja Luther

11/04/2015

09:23 AM Revision 4e247b36 (cdm-dataportal): .gitignore
Andreas Kohlbecker
09:23 AM Revision 10055120 (cdm-dataportal): typo
Andreas Kohlbecker
09:23 AM Revision 0ed08d92 (cdm-dataportal): configuring new pom.xml for selenium tests and starting to adapt the headless-maven-tests.sh script
Andreas Kohlbecker
09:23 AM Revision 5cd83b6e (cdm-dataportal): moving test folder to project root
Andreas Kohlbecker

11/03/2015

04:15 PM Revision a0bbccce (cdm-dataportal): Fix some labels
Patrick Plitzner
11:59 AM Revision 612d9ce9 (cdmlib): Evaluate publish flag in portal controller
Patrick Plitzner
11:10 AM Revision eeef091f (cdmlib): Return type designations with associated taxa
Patrick Plitzner
11:07 AM Revision 4696db41 (cdmlib): Fix return type
Patrick Plitzner
08:48 AM Revision b82f869a (taxeditor): Fix type designation filter for derivative search
Patrick Plitzner
08:26 AM Revision c97430d7 (taxeditor): Fix label type info
Patrick Plitzner
07:57 AM Revision c8f76ae5 (taxeditor): Add type infop to derived unit label
Patrick Plitzner

11/02/2015

10:54 PM Revision 24d80857 (utis-client): instruction on how to use
Andreas Kohlbecker
06:41 PM Revision 8830229b (taxeditor): Do not expand type designation section automatically
Patrick Plitzner
06:12 PM Revision 07929589 (taxeditor): Remove types from taxon associations detail element
Patrick Plitzner
06:10 PM Revision db98babc (taxeditor): Initialize TypeDesignationSection
Patrick Plitzner
05:04 PM Revision d21a66e3 (taxeditor): Inherit from abstract type designation element
- label fix Patrick Plitzner
04:17 PM Revision 31f49547 (taxeditor): Remove extra remoting code
Patrick Plitzner
04:10 PM Revision eb9a2f74 (taxeditor): Hide SearchBar when linking to taxon editor
Patrick Plitzner
04:08 PM Revision e3b2b220 (utis-client): simple test implementetd
Andreas Kohlbecker
03:55 PM Revision 5947df8a (utis-client): using mustache template to add deployment descriptor to the final client pom.xml
Andreas Kohlbecker
03:10 PM Revision 368b5186 (utis-client): client api generation working
Andreas Kohlbecker
03:03 PM Revision 06f32144 (utis-webapp): ClassificationMixIn removed - it is now longer required since the tnr message model has changed
Andreas Kohlbecker
03:01 PM Revision f089f86e (taxeditor): Fix some labels and handle toggle states
Patrick Plitzner
02:59 PM Revision 3e617a49 (utis-core): model changes: TaxonName.fullName -> scientificName; Classification now is ordered list of HigherClassificationElements
Andreas Kohlbecker
02:42 PM Revision af0c6587 (taxeditor): Fix exception when using DerivativeEditor when no "real" RCP editor is
avtice Patrick Plitzner
02:11 PM Revision b99ebb39 (taxeditor): Merge branch 'develop' into unify_derivative_views
Conflicts:
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/detail/DetailsViewer.java
Patrick Plitzner
01:54 PM Revision 4a1ab701 (cdmlib): #5318
Katja Luther
11:49 AM Revision 4b61c2b2 (taxeditor): Add type designation collection elemetn to derived unit details view
Patrick Plitzner
09:33 AM Revision d85f4cfb (taxeditor): minor
Katja Luther
09:30 AM Revision 644a2d26 (taxeditor): #5325
Katja Luther

10/30/2015

11:01 PM Revision fb854eb9 (utis-client): new approach whereas the client generation is triggered via a bash script
Andreas Kohlbecker
06:17 PM Revision b907a74a (utis-client): first draft for an project to automatically create a client api to utis
Andreas Kohlbecker
04:53 PM Revision 015c50f8 (utis-webapp): Installation instructions
Andreas Kohlbecker
04:51 PM Revision 6cbbdab3 (utis-core): flexible selection of utis.home folder for development and production mode
Andreas Kohlbecker
04:31 PM Revision cc7c531b (taxeditor): #5297 Implement client side remoting progress monitor feedback mechanism, Add test for monitor feedback timeout
#5297 Add test for monitor feedback timeout Cherian Mathew
04:30 PM Revision ac7c4c35 (cdmlib): #5297 Move monitor thread api to super interface, Implement monitor feedback timeout
#5297 Add monitor feedback timeout, Cleanup code Cherian Mathew
03:41 PM Revision d83d37cd (utis-webapp): using version 1.2.0-SNAPSHOT of utis-core
Andreas Kohlbecker
03:40 PM Revision 8055278c (utis-core): utis.home folder the location for sore data adapts to system environment
Andreas Kohlbecker
03:11 PM Revision 0684526c (utis-webapp): modifications in logging
Andreas Kohlbecker
03:10 PM Revision 2322a6bc (utis-webapp): fixing bug which prevented from finding ClientClasses
Andreas Kohlbecker
03:09 PM Revision c2b0dfd0 (utis-webapp): using utis-core 1.1.2 and adding comment regarding remote debugging
Andreas Kohlbecker
03:06 PM Revision 3a7bfc4b (utis-core): setting version to 1.2.0-SNAPSHOT for dev branch
Andreas Kohlbecker
03:06 PM Revision 1f4c2592 (utis-core): Merge tag '1.1.2' into develop
release tag 1.1.2 Andreas Kohlbecker
03:05 PM Revision 5bcc9e8f (utis-core): Merge branch 'release/1.1.2'
Andreas Kohlbecker
03:05 PM Revision 7e368459 (utis-core): setting release version in pom.xml to 1.1.2
Andreas Kohlbecker
02:53 PM Revision 2f6e2fa2 (utis-core): commenting test for TDBStore
Andreas Kohlbecker
02:51 PM Revision 23014753 (utis-core): completely removing all apache jena dependencies, keeping TDBStore.java as TDBStore.java.hidden
Andreas Kohlbecker
02:49 PM Revision 96693562 (utis-core): completely removing all apache jena dependencies, keeping SparqlClient.java as SparqlClient.java.hidden
Andreas Kohlbecker
10:16 AM Revision 1676c012 (cdmlib): Add datasource for unit tests to launch configuration
Cherian Mathew
12:00 AM Revision 96b0307e (utis-webapp): configurtion logging
Andreas Kohlbecker
12:00 AM Revision 83f0a3ee (utis-webapp): updating to utis-core 1.1.1
Andreas Kohlbecker

10/29/2015

11:59 PM Revision 7d0da716 (utis-webapp): ignoring broken GBIF client
Andreas Kohlbecker
11:41 PM Revision 9af3f6af (utis-core): reverting pom version back to 1.2.0-SNAPSHOT
Andreas Kohlbecker
11:40 PM Revision 834f97d5 (utis-core): Merge tag '1.1.1' into develop
release tag 1.1.1 Andreas Kohlbecker
11:39 PM Revision aeabe587 (utis-core): Merge branch 'release/1.1.1'
Andreas Kohlbecker
11:39 PM Revision caad6632 (utis-core): setting pom to hotfix release version 1.1.1
Andreas Kohlbecker
11:38 PM Revision deeccd97 (utis-core): better detection of synonyms to avoid adding the accepted taxon as its own synonym
Andreas Kohlbecker
11:36 PM Revision 5909ec82 (utis-core): disabling automatic execution of the jaxb2 maven plugin
Andreas Kohlbecker
06:34 PM Revision 7ec48af1 (utis-core): bumping development version to 1.2.0-SNAPSHOT
Andreas Kohlbecker
06:28 PM Revision 837b04ac (utis-core): Merge tag '1.1.0' into develop
release 1.1.0 Andreas Kohlbecker
06:27 PM Revision d022bdb6 (utis-core): Merge branch 'release/1.1.0'
Andreas Kohlbecker
06:27 PM Revision 77a2b636 (utis-core): setting project version for release to 1.1.0
Andreas Kohlbecker
06:22 PM Revision 97b8da2f (utis-core): avoiding NPE
Andreas Kohlbecker
06:22 PM Revision 8c4ea30c (utis-core): fixing probelm in genus_test
Andreas Kohlbecker
06:20 PM Revision 37817d9f (utis-core): adding taxon url to result
Andreas Kohlbecker
06:01 PM Revision c1e4fe4e (utis-core): resetting CHECK_UPDATE_MINUTES to once a day & fixing missing subchecklistInfo in responses of the EEA_BDC_Client
Andreas Kohlbecker
05:46 PM Revision 79ec3c00 (taxeditor): Fix test by catching expected exception
Cherian Mathew
05:44 PM Revision 162c502c (utis-core): removing useless tests
Andreas Kohlbecker
05:27 PM Revision 50781539 (utis-core): easier switching between rdf download locations & adding support for genus resolution
Andreas Kohlbecker
05:01 PM Revision 4c4e93bd (taxeditor): Add logs
Cherian Mathew
04:58 PM Revision a179ac89 (taxeditor): #5297 Implement monitor feedback, Add corresponding tests
#5297 Add inconsistent monitor feedback test Cherian Mathew
04:55 PM Revision eeedb131 (cdmlib): #5297 Make result, feedback objects in remoting monitor serializable, Update test service with monitor feedback
Cherian Mathew
04:07 PM Revision c520990d (utis-webapp): following the changes in utis-core, using now the ClientFactory
Andreas Kohlbecker
04:04 PM Revision 4a13ca5f (utis-core): implementation of a manager for neo4j stores, the ClientManager has been turned into ClientFactory
Andreas Kohlbecker
02:32 PM Revision a014602f (utis-core): cration of a ClientManager to provide quasi singleton beans if client classes
Andreas Kohlbecker
01:40 PM Revision 2edbd588 (taxeditor): Pre-select classification for remote moving operations
Patrick Plitzner
01:32 PM Revision ea3b1f1c (taxeditor): Fix possible NPE and widget disposed exception
Patrick Plitzner
12:59 PM Revision ed818f5d (cdmlib): Fix NPE in test
Patrick Plitzner
11:25 AM Revision 954f2633 (utis-webapp): last adaption to changes in the project name and structure in drf-workflow which is now utis-core
Andreas Kohlbecker
11:10 AM Revision 8f96bb65 (taxeditor): Remove identifier and taxon associations from bulk editor details view
- reduce space taken by taxon associaton section #5348 Patrick Plitzner
11:10 AM Revision 4fdd8520 (taxeditor): Show taxon associations only when they exist
Patrick Plitzner
11:04 AM Revision c87762cf (taxeditor): Handle image loading
- add label to indicate that image was not found
- refactored code
Patrick Plitzner
11:04 AM Revision a644d73a (taxeditor): Add image preview to media simple view
Patrick Plitzner
11:04 AM Revision 96755ebc (taxeditor): Trim code
Patrick Plitzner
10:40 AM Revision cc872960 (utis-core): automatic updating of the eea rdf data implemented (poll interval at 1 minute for testing)
Andreas Kohlbecker
10:40 AM Revision b142d49c (utis-core): automatic updating of the eea rdf data implemented (poll interval at 1 minute for testing)
Andreas Kohlbecker
10:37 AM feature request #5366: Implement less strict check for compatibility between taxeditor and target cdmserver
Added a preference to disable the timestamp check (r26316) and allow the taxeditor to connect to cdmservers with the ... Cherian Mathew
10:31 AM feature request #5366 (New): Implement less strict check for compatibility between taxeditor and target cdmserver
Following the implementation of #5302, it may be required to ease the restrictions for certain scenarios e.g. if deve... Cherian Mathew
10:35 AM Revision 54fc44a1 (taxeditor): #5366 Add preference for disabling services api timestamp check
Cherian Mathew
10:33 AM Revision b20c081f (utis-webapp): adapting to changes in the project name and structure in drf-workflow which is now utis-core
Andreas Kohlbecker

10/28/2015

05:15 PM feature request #5365 (Closed): Add delete configurator to Media View image gallery
we may need to discuss how the default configuration for deleting media from an image galery should look like. Delete... Patrick Plitzner
05:09 PM Revision 9bfdcf39 (cdmlib): Return correct match strategy #5337
Patrick Plitzner
05:08 PM Revision a8124871 (taxeditor): Fixed persistency of Matching preferences #5337
Patrick Plitzner
04:51 PM Revision 791e6768 (cdmlib): Fix typo
Patrick Plitzner
04:51 PM Revision 1fd5542e (cdmlib): Add amplificatiion ressult to updated objects when deleting a single
read Patrick Plitzner
03:27 PM Revision 2131fffa (taxeditor): Convert MobotOpenUrlPreferences and BulkEditorPreferencePage to
FieldEditorPreferencePage (#5336, #5338) Patrick Plitzner
03:23 PM Revision 42c4238c (taxeditor): #5297 Integrate remoting monitor cancel functionality in ui
Cherian Mathew
03:22 PM Revision 43111c8e (cdmlib): Merge branch 'ticket-5297' into develop
Cherian Mathew
03:21 PM Revision 1c7b9181 (cdmlib): #5297 Add cancel and waitForFeedback functionality
Correct work units Cherian Mathew
12:05 PM Revision 4149811a (utis-core): commenting out yourkit profiler reladed lines to avoid compilation problems
Andreas Kohlbecker
11:53 AM Revision d11716c6 (cdmlib): Fix moving of derivatives with null parent (+test)
Patrick Plitzner
11:24 AM bug #5048: cdm-server causes unusual high native memory consumption for jvm
Just an Idea: Could this be related to the jsvc process which is starting the JVM as a linux service?
The edit-test...
Andreas Kohlbecker
11:18 AM bug #5104 (In Progress): prevent MarkerTypes from being deleted when there are Marker entities using that type
fixed with r26304, but have to fix the test.
Katja Luther
10:17 AM Revision 52345582 (taxeditor): minor
Katja Luther
09:41 AM Revision 8ef15f41 (taxeditor): last changes for #5325
Katja Luther
09:35 AM Revision 06cfae86 (cdmlib): fix #5104 and #5328
Katja Luther

10/27/2015

05:24 PM Revision 93590159 (taxeditor): #5297 Add remoting progress monitoring
#5297 Change active seesion variable to a inheritable thread local variable and add relevant tests
Add monitered ope...
Cherian Mathew
04:24 PM Revision 3087df1b (cdmlib): #5297 Refactor ProgressMonitorController, Add Remoting Progress monitor
#5297 Add progress monitor service, Add test services
#5297 Add monit import method
#5297 Update no. of work units
...
Cherian Mathew
04:22 PM feature request #5362 (New): Shorten/Enhance URL exception text
I would add it to the end in brackets, not as a prefix. Instead as prefix we could have something like: "Error in URI... Patrick Plitzner
03:35 PM Revision 8495c653 (taxeditor): Merge branch 'develop' into unify_derivative_views
Patrick Plitzner
03:35 PM Revision b43b1993 (taxeditor): Allow null as parent when moving derivatives
Patrick Plitzner
03:23 PM Revision 48a7f02a (utis-core): renaming project and packages to cybertaxonomy.org/utis/
Andreas Kohlbecker
03:08 PM Revision 55e09b37 (cdmlib): Allow null for parent when moving derivatives
Patrick Plitzner
02:27 PM Revision 905038e2 (taxeditor): Removed "New Specimen" option from main menu
Patrick Plitzner
02:19 PM Revision b4b02e3e (taxeditor): Removed option and preferences for directly opening specimen after
creation. Patrick Plitzner
02:15 PM Revision 329832d3 (taxeditor): Remove double-click support for opening specimen from the factual data
view Patrick Plitzner
02:13 PM Revision e4e1656c (taxeditor): Add support for generic SpecimenOrObservationBase class to
EntitySelectionElement and selection wizard Patrick Plitzner
11:49 AM Revision cf0a8f3f (taxeditor): Fix and refactor addImageGallerHandler
Patrick Plitzner
11:30 AM Revision b0c4a3aa (utis-core): gathering classification information implemented with test
Andreas Kohlbecker
10:46 AM Revision 4ec9f8ca (taxeditor): Merge branch 'develop' into unify_derivative_views
Patrick Plitzner
10:45 AM Revision f65c57fa (taxeditor): Implement handler for creating (non-)taxon associated FieldUnits
Patrick Plitzner
10:35 AM Revision def5cf3f (utis-core): further cleaning up
Andreas Kohlbecker
10:28 AM Revision a93145b5 (utis-core): cleaning up: removing remains from SPARQL client implementations
Andreas Kohlbecker
10:18 AM Revision 99b66a4f (utis-core): cleaning up old TODOs
Andreas Kohlbecker
10:13 AM Revision 7413db32 (utis-core): implementing MatchingNameString and MatchingNameType
Andreas Kohlbecker
09:06 AM Revision 9e235ff9 (utis-core): upgrading to neo4j 2.0.4 and first working implementation of all search modes, all tests successful
Andreas Kohlbecker
08:26 AM Revision 7f7b4382 (taxeditor): Add dynamic context menu entry for FieldUnit creation
Patrick Plitzner
 

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