Activity
From 08/05/2015 to 09/03/2015
09/03/2015
- 07:07 PM Revision 94b8c8af (taxeditor): #5187 Use new move methods with uuids as args
- 07:06 PM Revision 77c22958 (cdmlib): #5187 Add move methods with uuids as args
- 06:42 PM Revision cad55660 (cdmlib): Correct setting of status when moving derivates
- 06:31 PM Revision 025f3eb9 (taxeditor): Update operation for move taxon nodes
- 06:23 PM Revision 2a868994 (cdmlib): Make new move method write on commit
- 05:54 PM Revision 41736211 (taxeditor): Add unimplemented methods
- 05:54 PM Revision 44ba1ad7 (cdmlib): Revert back move method with entities as arguments
- 05:42 PM Revision 4b242b1d (taxeditor): Correct merge
- 05:11 PM Revision d637e4ba (taxeditor): Merge branch 'develop' into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.editor/plugin.xml
eu.etaxonomy.taxedito... - 03:38 PM Revision 392048d6 (taxeditor): #5188 Add special for deleting sequence
- 03:38 PM Revision cd49ec22 (taxeditor): #5186 Fix erros in sequence merge and creating new specimen
- 03:37 PM Revision 09c7e4e6 (cdmlib): #5188 Fix issues with deleting specimens , sequences, single reads
- 12:49 PM Revision 6b630b5f (taxeditor): minor
- 12:35 PM Revision 98c7c2f1 (taxeditor): moving taxonnode with drag & drop as predecessor fixed
- 12:09 PM Revision a9afeb56 (taxeditor): #5138 Add test for normal Person load case
- 11:57 AM Revision 31d3e34d (taxeditor): change preferences page for taxonnode sort
- 07:57 AM Revision f5e182d4 (taxeditor): adapting transient service implementation to changes in cdmlib
- - deprecated method removed
09/02/2015
- 03:49 PM Revision 59592442 (cdmlib): adapting test to modified test data
- 03:27 PM Revision 7ff16b32 (cdmlib): fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage
- 03:27 PM Revision 64787652 (cdmlib): removing System.out.println
- 03:27 PM Revision db637fb3 (cdmlib): #5177 out-commented code snipped to enable sql logging for performance debugging
- 03:27 PM Revision ff24ddbd (cdmlib): typo in comment
- 02:54 PM Revision 84a43ef0 (taxeditor): fixing #5150
- 01:49 PM Revision 281f389b (taxeditor): error handling in deleteHandler/operation of navigator
- 12:27 PM Revision 36b5f7a3 (taxeditor): better messaging when convert person to team does not work
- 12:02 PM Revision 73be66a0 (cdmlib): set the test to ignore, because the funcionality is not implemented yet.
- 12:02 PM Revision b95fcee4 (cdmlib): revert the local changes
- 12:02 PM Revision 28f177b1 (cdmlib): minor
- 11:38 AM Revision fbd92259 (taxeditor): Implementation of AlignmentEditorPasteHandler changed.
- 11:34 AM Revision 812f4a8d (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into actualBranch
- 11:33 AM Revision 95ee1b51 (taxeditor): moving more than one taxon node, merge of team and person, reusing name for new taxon
- 11:29 AM Revision ab9f98b3 (taxeditor): Paste action for AlignmentEditor added.
- 11:29 AM Revision 0e24f823 (taxeditor): Add space to message
- 11:08 AM Revision 73bc3754 (cdmlib): Enhance ABCD import report
- 11:03 AM Revision f4f5cd63 (taxeditor): #5181 Fix incorrect load of CdmServiceCacher when connecting via Datasource view
- 10:48 AM Revision 30df1c38 (cdmlib): adding a convertmergeStrategy because of a different handling of merge and convert
- 10:48 AM Revision 6ae5ca99 (cdmlib): changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person
- 10:48 AM Revision 6d62d023 (cdmlib): adding a ConvertMergeStrategy
09/01/2015
- 05:45 PM Revision 4df2d57c (taxeditor): Ignoring test until #5138 is fixed
- 05:27 PM Revision 4ca1afec (taxeditor): Merge remote-tracking branch 'origin' into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.application/pom.xml
eu.e... - 05:23 PM Revision 5e6e427a (taxeditor): #5138 Add test for cascade error
- 01:42 PM Revision 97fd3d96 (taxeditor): Fix NPE
- 11:53 AM Revision 57831463 (cdmlib): Merge branch 'develop' into abcd
- 11:25 AM Revision dc3fd428 (cdmlib): #5040 - adding parameters to transmission engine webservice to set targetAreaLevel, lowerRank & upperRank
- 11:17 AM Revision 48584197 (taxeditor): Avoid exception loop when taxon name is null (#4996)
- 10:24 AM Revision 7f8351e8 (taxeditor): Do not show taxon navigator menu entries when nothing is selected
- 10:23 AM Revision c514b54e (taxeditor): Trim code
- 08:24 AM Revision a6e724f8 (cdmlib): Add test for non-parsabel taxon name
- 08:24 AM Revision 94fe584f (cdmlib): Refine rank parsing
- - if rank cannot be parsed the taxon will be created as is with a
single taxon node without any parent taxon node but...
08/31/2015
- 11:35 PM Revision 0eef1621 (cdm-dataportal): #5112 - documentation in the admin settings regarding the marked area filter and its effect on the distribution area hierarchy.
- 11:08 PM Revision f22bf4ad (cdmlib): #5112 - hiding fall back areas from the hierachchic distribution representation
- 03:50 PM Revision 04a445b3 (cdmlib): Add new test for name parsing
- 03:50 PM Revision a4964af7 (cdmlib): Increase reference titlecache in test DBs
- 11:45 AM Revision 4b57e9fb (cdmlib): #5070 - adding missing part in init stategy for second level derivatives
08/30/2015
08/29/2015
08/28/2015
- 12:38 PM Revision 37d7dfe9 (cdm-server): adding option to allow forcably updating the database schema version
- 12:16 PM Revision 2561020a (cdm-server): minor change in text written to log
- 12:04 PM Revision bdb3dded (cdm-server): updating links to http://cybertaxonomy.eu/
- 11:22 AM Revision 5647aaea (cdm-server): running all cdm-webapp instances from unpackes webapplication
- - the war file is unzipped by the bootloader before starting the instances
- 11:19 AM Revision 6254fafb (cdm-server): restoring StartupQueue which was removed before
08/27/2015
- 06:11 PM Revision da1d3851 (taxeditor): #5009 Fix post polytomous key delete operation event handling
- 06:07 PM Revision fb109faa (cdmlib): Replace load with findByUuid for delete with uuid(s) as argument.
- 06:05 PM Revision 49a9d8f8 (cdm-server): #4958 - code refacoring preserverd after reverting change sets
- 06:03 PM Revision 3a193852 (cdm-server): new eclipse launcher
- 05:06 PM Revision 5eff05c8 (cdm-server): Revert "Revert "Revert "#4958 parallel starting of instances to speed up the initial start up"""
- This reverts commit caccde4bf7f795adcce8e0967df6690f3ef9638e.
- 04:30 PM Revision caccde4b (cdm-server): Revert "Revert "#4958 parallel starting of instances to speed up the initial start up""
- This reverts commit eb676073dbb9cd9fad245a3fc91a7e3e604627cc.
- 04:14 PM Revision 6c9b7962 (cdmlib): #5161 Add initListener method to CdmBase object
- 04:12 PM Revision b4d31af3 (taxeditor): #5161 Initialize listeners on cdm entities before put in cache
- 04:12 PM Revision 76fe3732 (taxeditor): #5161 Fix problem of new entity not refreshed
- 01:04 PM Revision 123de1cc (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into actualBranch
- 01:01 PM Revision 01effd90 (taxeditor): fix #5171
08/26/2015
- 06:39 PM Revision 14bbe452 (taxeditor): Shared functionality moved from AlignmentEditorCopyHandler to AlignmentModelUtils in LibrAlign.
- 04:14 PM Revision 1afe3ed2 (taxeditor): JavaDoc extended.
- Different LibrAlign model action used in AlignmentEditorCutHandler.
- 04:07 PM Revision 65fe133d (taxeditor): Cut action for AlignmentEditor implemented.
- 02:55 PM Revision 0d8019de (taxeditor): Check for disposed widget
- 02:55 PM Revision 1226f24c (taxeditor): #5143, #5144 Improve load performance for name editor
- 02:55 PM Revision 6e2297e3 (taxeditor): Move Base operations test class to right package
- 01:23 PM Revision 4bef5400 (taxeditor): Add PDE runtime environment to target platform (provides Plug-In Spy)
- 01:13 PM Revision 1878ece9 (taxeditor): Shared clipboard added to AlignmentEditor. (Should be moved to a global EDITor class in the future.)
- 12:36 PM Revision 1400c5b2 (cdmlib): add @Audited to startNumber
- 12:30 PM Revision 48f67449 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into actualBranch
- 12:29 PM Revision e82bceda (taxeditor): close the polytomouskey-editor if the key is deleted
- 11:52 AM Revision 4e400041 (taxeditor): AbstractFocusedAlignmentAreaHandler added.
- 11:03 AM Revision 317a1bcb (taxeditor): Merge branch 'develop' into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/input/AgentEditorInput.... - 08:15 AM Revision 02679036 (taxeditor): Disable MediaView for bulk editor (#5162)
- - bulk editor does only activate media view when showing taxa
- code trimming
08/25/2015
- 08:32 PM Revision 4ec9f3b6 (taxeditor): Some general methods moved from AlignmentEditor to SWTUtils in bioinfweb.commons.
- 08:13 PM Revision 479060ec (taxeditor): AlignmentEditorCopyHandler now sets current action status.
- 05:42 PM Revision 94d3e32a (taxeditor): Move property tester to editor plugin
- 05:38 PM Revision a0f46df5 (taxeditor): AlignmentEditorCopyHandler now offers copying functionality as a static method.
- Copying not performed, if no nucleotides are selected.
- 05:28 PM Revision c0e388f7 (taxeditor): Moved functionality to be shared from AlignmentEditorCopyHandler to AlignmentEditor.
- AlignmentEditorCopyHandler refactored.
- 05:17 PM Revision afa09948 (taxeditor): Initial implementation of AlignmentCopyHandler finished.
- Minor changes.
- 05:10 PM Revision acb315d9 (taxeditor): Replace deprecated method
- 03:04 PM Revision 7929348c (taxeditor): Add Copy functionality to AlignmentEditor
- 01:56 PM Revision 4293f24c (cdmlib): changes for deleting polytomous key nodes
- 01:52 PM Revision 8bd9a808 (taxeditor): Merge branch 'develop' into LibrAlign
- 01:28 PM Revision 0bb254ee (taxeditor): #5160 Use new merge method with ids as arguments
- Conflicts:
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/input/AgentEditorInput.... - 01:09 PM Revision 3a8e076a (taxeditor): #5160 Use new merge method with ids as arguments
- 01:03 PM Revision 0d5ac546 (cdmlib): #5160 Add new merge method with id's as arguments
- 10:21 AM Revision 4d36bf6f (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- 10:18 AM Revision 6f727089 (taxeditor): fix #5153
- 09:50 AM Revision 97c86758 (taxeditor): fix #5153
- 08:36 AM Revision 221a1f2e (taxeditor): Externalize Strings
- 08:22 AM Revision 75ebabd0 (taxeditor): Merge develop into branch
- 08:15 AM Revision 59aac23b (taxeditor): Change order of controls
- 08:06 AM Revision b13d085b (taxeditor): Use web icon for URL button
- 08:06 AM Revision 98fbf545 (taxeditor): Create constant for default column number in detail sections
- 08:05 AM Revision 1fbf88c8 (taxeditor): Split up control creation of TextWithLabelElement
- - this fixes layout problems when inserting a separate button for
opening links
08/24/2015
- 07:44 PM Revision 1fd12570 (taxeditor): Trim code
- 07:43 PM Revision e96340a6 (taxeditor): Remove equal width from columns
- 06:57 PM Revision 09152959 (taxeditor): Test implementation of Copy action added to AlignmentEditor.
- 05:17 PM Revision da3cc7e3 (taxeditor): Correct properties file load and server info test
- 02:33 PM Revision c69c2dcd (taxeditor): Add entity type to CdmChangeEvent and fixes #5139
- 01:02 PM Revision 2743a292 (taxeditor): Externalize strings
- 11:58 AM Revision 15a62a24 (taxeditor): #4073 Initial implementation of local cdm-server
- 11:34 AM Revision 7d7c5562 (taxeditor): Merge branch 'develop' into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServic... - 11:11 AM Revision 6560d987 (taxeditor): Warn user that URL will not be saved in bold and red (#5065, #5141)
- 10:44 AM Revision c5273839 (taxeditor): Add OS and java info to MessagingUtils stacktrace
- 10:43 AM Revision c269a745 (taxeditor): Change order parameters in DetailsView for sources (#5133)
- 10:39 AM Revision c8938223 (taxeditor): Support UUID search in bulk editors (#5103)
- 10:39 AM Revision caddd4f3 (taxeditor): Trim code
- 10:39 AM Revision 3c258b8a (taxeditor): Remove comments
- 10:39 AM Revision 9e0f8df5 (taxeditor): Handle ampersand correctly in section titles (#5142)
- 10:35 AM Revision 4219586b (taxeditor): Fix application ID
08/21/2015
- 10:50 AM Revision 4d5d904c (cdmlib-apps): Add annual CoL source
- 10:48 AM Revision e7c60aae (cdmlib): minor
- 10:15 AM Revision 2a0f3d06 (taxeditor): #4717 Correct java exec called for macosx
- 08:46 AM Revision 42a0c5ab (taxeditor): #4717 Correct macosx dir structure
08/20/2015
- 08:54 PM Revision 15a394a5 (cdmlib): Adapt rank split for CoL to higher>species
- 08:47 PM Revision 73406d40 (cdmlib-apps): Adapt CoL import Activator to latest changes
- 08:47 PM Revision 2271bdb0 (cdmlib-apps): Adapt BM datasources to new SQL Server
- 06:59 PM Revision 47def4dd (taxeditor): #4717 Correct macosx java path
- 06:27 PM Revision 5fce47c0 (taxeditor): #4717 Correct dir relative path to java exec for mac osx
- 05:52 PM Revision 5a7b73b8 (taxeditor): #4717 Correct dir for changing permissions
- 05:48 PM Revision 07598008 (taxeditor): #4717 Add seperate product file for jre bundle
- 05:08 PM Revision 11adbf4d (cdmlib): Fix CoL import (taxon relationship split)
- 12:55 PM Revision 4b0488d0 (taxeditor): fix for #5114
- 10:37 AM Revision 757b1a9f (taxeditor): fix #5153
08/19/2015
08/18/2015
- 04:17 PM Revision 99d52dfc (taxeditor): Merge branch 'hotfix/3.7.1'
- 04:14 PM Revision 02d55e51 (taxeditor): updating poms for branch'hotfix/3.7.1' with non-snapshot versions
- 04:13 PM Revision 0ae514f3 (taxeditor): Revert project versions to 3.7.1-SNAPSHOT
- 04:12 PM Revision ba3a1a0f (taxeditor): Updated version in pom / project files to taxeditor version : 3.7.1 and cdmlib version :
- 04:11 PM Revision d03c44e0 (taxeditor): changes for move descriptions and description elements
- 04:10 PM Revision 83819bfb (taxeditor): Updated version in pom / project files to taxeditor version : 3.7.1-SNAPSHOT and cdmlib version :
- 04:09 PM Revision 77202a8d (taxeditor): updating poms for 3.7.1 branch with snapshot versions
- 02:56 PM Revision b7c9ffee (taxeditor): Merge branch 'develop' into LibrAlign
- 02:45 PM Revision 6950e783 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- 02:26 PM Revision e8f9b86d (taxeditor): small changes for ideas for better drag and drop in taxonnavigator
- 02:09 PM Revision 8f6ecf94 (taxeditor): white spaces
- 01:47 PM Revision 40243bd5 (taxeditor): Correct config for molecular plugin
- 01:40 PM Revision 69373790 (taxeditor): changes for move descriptions and description elements
- 01:35 PM Revision ab499326 (taxeditor): minor
- 07:51 AM Revision 926fd5b3 (taxeditor): Remove comments
08/17/2015
- 06:00 PM Revision 3650a540 (cdmlib): Check capabilites of BioCase provider for supported ABCD schemas
- 02:56 PM Revision 7f0642d4 (taxeditor): Rename Derivative View to Derivative Editor
- 12:59 PM Revision 3141e8b0 (taxeditor): Minor changes.
- 12:56 PM Revision f2218c81 (taxeditor): Fixed NPE when loading single reads without attached pherogram.
- 12:52 PM Revision 1bb3e750 (taxeditor): test commit
- 10:38 AM Revision 5d4927e5 (taxeditor): Added missing molecular plugin projects
- 10:19 AM Revision af5377be (taxeditor): white space changes
- 09:38 AM Revision 1d767e3d (taxeditor): Renamed branch
08/13/2015
- 02:13 PM Revision 7dd8460f (taxeditor): minor
- 02:12 PM Revision 24a7765e (taxeditor): minor
- 02:09 PM Revision 1924310e (taxeditor): fix jenkins
- 01:58 PM Revision e1300033 (taxeditor): fix jenkins
- 01:31 PM Revision 117eb67f (taxeditor): fix #2480
- 01:29 PM Revision 651bf830 (taxeditor): minor
- 01:20 PM Revision 1dc79a5e (taxeditor): fix delete polytomouskeynode and improve merge in bulk editor
- 09:36 AM Revision 9628de9a (cdmlib-apps): taxonomicSpecialist and groupCoordinator import
08/12/2015
- 03:32 PM Revision 2e4b9441 (cdmlib): Fix broken test
- 10:57 AM Revision 585fe354 (cdmlib): adding saving of synonym and taxon for swapSynonymAndAcceptedTaxon
- 10:57 AM Revision 0e3abb12 (cdmlib): whitespace
- 10:38 AM Revision 44dc26aa (cdmlib): Fix UniqueKey issue for sequence ciations
08/11/2015
- 10:31 AM Revision 5bb57df1 (taxeditor): Revert last change
- 09:43 AM Revision 224112ba (taxeditor): Fix dependencies for LibrALign
- - added swt packages to imported packages
- 08:41 AM Revision 41d011b3 (taxeditor): Depenedency management
- - added javax.swing and org.eclipse swt to dependencies
- 07:02 AM Revision b1fc3d3b (taxeditor): Remove unused folder
08/10/2015
08/07/2015
- 05:34 PM Revision cf1a7b62 (cdmlib): minor
- 05:33 PM Revision 2e7c5d28 (cdmlib-apps): fix compilation error in app-import
- 05:28 PM Revision 33ce2380 (cdmlib-apps): Latest changes to CoL import activator
- 05:25 PM Revision 3857f9cb (cdmlib): Adding filter functionality to stream converter (not yet ready)
- 04:10 PM Revision aed321e2 (taxeditor): #5139 Add refresh of classification when new taxon is direct child or root node
- 04:05 PM Revision fe805a6c (cdmlib): Revert final qualifier after discussion in #5102
- 02:11 PM Revision cfb00eab (taxeditor): #5134, #5136 (and potentially #5135) Fix incorrect clean up of session manager and Check for class in new taxon wizard
08/06/2015
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