Activity
From 07/21/2015 to 08/19/2015
08/19/2015
08/18/2015
- 04:17 PM Revision 99d52dfc (taxeditor): Merge branch 'hotfix/3.7.1'
- 04:14 PM Revision 02d55e51 (taxeditor): updating poms for branch'hotfix/3.7.1' with non-snapshot versions
- 04:13 PM Revision 0ae514f3 (taxeditor): Revert project versions to 3.7.1-SNAPSHOT
- 04:12 PM Revision ba3a1a0f (taxeditor): Updated version in pom / project files to taxeditor version : 3.7.1 and cdmlib version :
- 04:11 PM Revision d03c44e0 (taxeditor): changes for move descriptions and description elements
- 04:10 PM Revision 83819bfb (taxeditor): Updated version in pom / project files to taxeditor version : 3.7.1-SNAPSHOT and cdmlib version :
- 04:09 PM Revision 77202a8d (taxeditor): updating poms for 3.7.1 branch with snapshot versions
- 02:56 PM Revision b7c9ffee (taxeditor): Merge branch 'develop' into LibrAlign
- 02:45 PM Revision 6950e783 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- 02:26 PM Revision e8f9b86d (taxeditor): small changes for ideas for better drag and drop in taxonnavigator
- 02:09 PM Revision 8f6ecf94 (taxeditor): white spaces
- 01:47 PM Revision 40243bd5 (taxeditor): Correct config for molecular plugin
- 01:40 PM Revision 69373790 (taxeditor): changes for move descriptions and description elements
- 01:35 PM Revision ab499326 (taxeditor): minor
- 07:51 AM Revision 926fd5b3 (taxeditor): Remove comments
08/17/2015
- 06:00 PM Revision 3650a540 (cdmlib): Check capabilites of BioCase provider for supported ABCD schemas
- 02:56 PM Revision 7f0642d4 (taxeditor): Rename Derivative View to Derivative Editor
- 01:29 PM bug #5149: Remove UNIQUE index on Sequence_Reference.citations_id column
- citations was @OneToMany before refactoring the molecular package. Seems like I forgot to add the remove index comma...
- 11:39 AM bug #5149 (Closed): Remove UNIQUE index on Sequence_Reference.citations_id column
- Summary was: "some Sequence_Reference tables have UNIQUE index on citations_id column"
I already deleted this on... - 12:59 PM Revision 3141e8b0 (taxeditor): Minor changes.
- 12:56 PM Revision f2218c81 (taxeditor): Fixed NPE when loading single reads without attached pherogram.
- 12:52 PM Revision 1bb3e750 (taxeditor): test commit
- 10:38 AM Revision 5d4927e5 (taxeditor): Added missing molecular plugin projects
- 10:19 AM Revision af5377be (taxeditor): white space changes
- 09:38 AM Revision 1d767e3d (taxeditor): Renamed branch
08/13/2015
- 02:13 PM Revision 7dd8460f (taxeditor): minor
- 02:12 PM Revision 24a7765e (taxeditor): minor
- 02:09 PM Revision 1924310e (taxeditor): fix jenkins
- 01:58 PM Revision e1300033 (taxeditor): fix jenkins
- 01:31 PM Revision 117eb67f (taxeditor): fix #2480
- 01:29 PM Revision 651bf830 (taxeditor): minor
- 01:20 PM Revision 1dc79a5e (taxeditor): fix delete polytomouskeynode and improve merge in bulk editor
- 09:36 AM Revision 9628de9a (cdmlib-apps): taxonomicSpecialist and groupCoordinator import
08/12/2015
- 03:32 PM Revision 2e4b9441 (cdmlib): Fix broken test
- 10:57 AM Revision 585fe354 (cdmlib): adding saving of synonym and taxon for swapSynonymAndAcceptedTaxon
- 10:57 AM Revision 0e3abb12 (cdmlib): whitespace
- 10:38 AM Revision 44dc26aa (cdmlib): Fix UniqueKey issue for sequence ciations
08/11/2015
- 11:10 AM task #4232 (In Progress): Check all Comparators for fulfilling the Comparator contract
- The IdentifiableEntity.compareTo method needs to be updated.
First of all I added the test of equality of the uuids.... - 10:31 AM Revision 5bb57df1 (taxeditor): Revert last change
- 09:43 AM Revision 224112ba (taxeditor): Fix dependencies for LibrALign
- - added swt packages to imported packages
- 08:41 AM Revision 41d011b3 (taxeditor): Depenedency management
- - added javax.swing and org.eclipse swt to dependencies
- 07:02 AM Revision b1fc3d3b (taxeditor): Remove unused folder
08/10/2015
08/07/2015
- 05:34 PM Revision cf1a7b62 (cdmlib): minor
- 05:33 PM Revision 2e7c5d28 (cdmlib-apps): fix compilation error in app-import
- 05:28 PM Revision 33ce2380 (cdmlib-apps): Latest changes to CoL import activator
- 05:25 PM Revision 3857f9cb (cdmlib): Adding filter functionality to stream converter (not yet ready)
- 04:10 PM Revision aed321e2 (taxeditor): #5139 Add refresh of classification when new taxon is direct child or root node
- 04:05 PM Revision fe805a6c (cdmlib): Revert final qualifier after discussion in #5102
- 02:11 PM Revision cfb00eab (taxeditor): #5134, #5136 (and potentially #5135) Fix incorrect clean up of session manager and Check for class in new taxon wizard
- 11:36 AM bug #5132 (Worksforme): Remove EDITor documentation from web
- The TaxEditor documentation on the web is very much outdated and will not be updated in future. We should remove it f...
08/06/2015
- 04:01 PM Revision 43527305 (taxeditor): #5130 Extend import wizards to import data via remoting and Add tests for the same
- 03:57 PM Revision 8f443c62 (cdmlib): #5130 Extend cdmlib import architecture to allow for remoting and Add import methods to IOService
08/04/2015
- 06:39 PM task #5129: Implement export for remoting
- Extended cdmlib exports and added new IO service to allow for remote exports - r25248.
Implemented remoting ui usin... - 06:34 PM Revision 26d19e4f (taxeditor): #5129 Extend export ui for remoting
- 06:29 PM Revision 37380884 (cdmlib): #5129 Extend export classes to allow for remote exports
- 06:10 PM Revision 573aae9a (taxeditor): #5029 Add dev remote source quick connect
08/03/2015
- 01:33 PM task #5129 (In Progress): Implement export for remoting
- 01:33 PM task #5129 (Worksforme): Implement export for remoting
- This will essential involve adding a new service for export and extending the current export architecture to allow fo...
07/30/2015
- 05:35 PM feature request #4072 (In Progress): [MASTER] Implement import / export / print publishing for remoting
- 05:07 PM task #5123: Integrate remoting capability in Checklist Editor
- Initial setup of remoting session in Checklist Editor done in r25246, but an existing null pointer exception prevents...
- 03:22 PM task #5123 (In Progress): Integrate remoting capability in Checklist Editor
- 03:22 PM task #5123 (Closed): Integrate remoting capability in Checklist Editor
- Integrate remoting capability in Checklist Editor
- 04:58 PM Revision cd335a3a (taxeditor): #5123, #5124 Make ChecklistEditor remoting session aware and fix performance issue with available distribution pereference page
- 03:06 PM Revision 068cf826 (taxeditor): #5122 Implement Null Entity Session and integrate it in required preference pages
- 12:55 PM Revision 09dcb999 (taxeditor): #5209 Implement auto selection of last successfully connected server / instance
- 12:47 PM Revision ac23ea9b (taxeditor): #5029 Add login info to application title bar
- 10:58 AM Revision 1b626d51 (taxeditor): #5029 Add functionality for login to remember credentials, reconnect and switch user
- 10:27 AM Revision abcbf7be (cdmlib): Correct default cache initialisation
07/29/2015
- 05:34 PM Revision eb676073 (cdm-server): Revert "#4958 parallel starting of instances to speed up the initial start up"
- This reverts commit c5c2e735159c8bc1bec2fdee5a5cfb432caedb84.
- 03:29 PM Revision c5c2e735 (cdm-server): #4958 parallel starting of instances to speed up the initial start up
- 11:03 AM Revision 431bcefd (utis-core): switching back to production server
- 11:01 AM Revision a257f80c (utis-webapp): adding webapp context path '/eubon-utis/' to pom.xml
- 10:33 AM Revision 215aa8d5 (utis-core): renaming query.name to query.queryString
07/28/2015
- 03:47 PM Revision 1ac5db02 (taxeditor): Correct test method call
- 03:33 PM Revision 9d1baebb (taxeditor): #5209 Add version ui elements to advanced view, Make port text field editable for localhost servers
- 02:15 PM Revision 19c39bf4 (taxeditor): #5029 Implement oneclick login for remoting
- 02:02 PM Revision 0656b8a5 (cdm-dataportal): #4904 avoiding unnecesary instantiation of description elements
- 12:23 PM Revision e08df6c4 (cdm-dataportal): #4904 fixing a couple of bugs
- 12:22 PM Revision 3ea85ac1 (cdm-dataportal): #4904 caching toc links to speedup the tests
- 11:01 AM Revision 59fe3c8e (cdm-dataportal): using JavascriptExecutor to count and get elements from the feature blocks
- - this is much much much more faster
- also loading text of drupalBlocks only if required
07/27/2015
- 09:21 PM Revision 54e11d16 (cdm-dataportal): #4904 avoiding unsessecary creation of footnotes BaseElements and footnotekey LinkElements
- 06:14 PM Revision b33ee150 (cdm-dataportal): #4904 creating lists of footnotes, footnotekeys and sources only when needed, and methos to check existance of these elements
- 04:12 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- in [#4292#note-10] FranckTheeten mentioned potential problems that could arise from having multiple layers in one sha...
- 04:10 PM feature request #2489: strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- the approach suggested in comment 1 is not fully sufficient, since the 'areas' that exist of multiple polygons will s...
- 03:51 PM Revision 7a47e8eb (cdm-dataportal): #4384 removing duplicate definition of webservice uri constant CDM_WS_TERM
- 03:38 PM Revision 9506fd1f (cdm-dataportal): #3470 cleaning up after release
- 02:55 PM Revision 858acef8 (cdm-dataportal): ignoring set of assertions in test until #4411 is decided
- 01:15 PM Revision 330d08aa (cdm-dataportal): #2988 distribution_hierarchy: lowest defined level style will be reused for all following levels
- 12:26 PM Revision 97ac3d38 (cdm-dataportal): #2988 bug fixing and introducing constant for default value for DISTRIBUTION_ORDER_MODE
- 11:47 AM Revision 8c671a1c (cdm-dataportal): #2988 fixing problem in update function
07/24/2015
- 11:03 PM Revision 07d2dbb6 (cdm-dataportal): #2988 using for DISTRIBUTION_ORDER_MODE 'TREE' as default, this was actually the default set by the install profile
- 10:23 PM Revision 90a6166e (cdm-dataportal): #3364 Simple search runs by default on the selected single classification
- 04:31 PM Revision 284fb36d (cdm-dataportal): #2988 using new setting variable instead of old one
- 04:23 PM Revision 7c74c5f5 (cdmlib): #2988 avoiding NPE and allowing empty omitlevels (bug fix)
- 04:04 PM Revision f5bc56a0 (cdm-dataportal): #2988 settings to choose area levels to be hidden in hierarchic distribution
- 03:33 PM Revision 9e775b38 (taxeditor): Fix URI Syntax error for new serialised model map
- 03:33 PM Revision e3ae7dfd (taxeditor): Fix compile error in FeaturDistributionDetailElement
- 03:25 PM Revision 5c1b6092 (taxeditor): Fix compile error in FeaturDistributionDetailElement
- 03:15 PM Revision 1eb23529 (cdmlib): Remove filter from stream partitioner
- 02:48 PM Revision 65345976 (cdm-dataportal): #4411 complete rewrite of the hierarchically orderd distributions
- 11:19 AM bug #4409: fallback areas are not adressable in the shape file
- the distribution map is now ok
Eckhard. please can you confirm that?
- 09:55 AM Revision 1bbf337c (cdmlib): minor code cleaning
07/23/2015
- 05:41 PM feature request #3904 (Resolved): EuroMed: Implement filtering rules for distributions
- all sub tickets are on status review now
- 05:39 PM bug #4409 (Resolved): fallback areas are not adressable in the shape file
- Replying to [[comment4|a.kohlbecker]]:
> The above changes have been applied to the shapefile and the updated shapef... - 05:31 PM bug #4409: fallback areas are not adressable in the shape file
- The above changes have been applied to the shapefile and the updated shapefile has been send to Tervuren in order to ...
- 04:57 PM bug #4409: fallback areas are not adressable in the shape file
- even after solving #4408 this is still not working. The cause for this that the fallback areas **Ju*, *Cz*, *IJ** and...
- 04:07 PM Revision 9995ecd9 (cdmlib): #4408 fixing a bug regarding fallback areas and adding more tests
- 03:30 PM Revision 0d2d1f78 (taxeditor): #5061 Add force refresh of p2 repositories before checking for updates
- 03:24 PM Revision 14c928ca (cdmlib): adding IdInVocabulary to the toString representation of NamedAreas
- 02:45 PM Revision 65e3bf45 (taxeditor): Add access to service cacher
- 02:09 PM Revision aa05eb6f (taxeditor): Correct serialised cdm map location
- 01:54 PM Revision 5a49a28f (taxeditor): #4932 Remove autowired members, Use serliaised cdm model map
- 01:37 PM Revision 6fbf1bd3 (cdm-dataportal): #4408 adapting portal to renamed controller parameter
- 01:34 PM Revision f1b276ef (cdmlib): #4408 removing occurences of fallbackAreaMarkerType in methods and renaming parameter in controller
- 10:23 AM Revision a2ae5990 (cdmlib): #4408 - updating documentation on Marked area filter regarding fallback areas
07/22/2015
- 05:55 PM Revision e29dff1d (cdmlib): merging fallbackAreaFilter rule into hiddenArea rule
- 05:55 PM Revision d3aad025 (cdmlib): all rules separated
- 05:55 PM Revision 591d1518 (cdmlib): minor refactoring
- 05:55 PM Revision 62769777 (cdmlib): disnetangling DescriptionUtility.filterDistributions()
- 05:55 PM Revision 8a2e7680 (cdmlib): fixing broken pager of getNamedAreasInUse
- 04:23 PM Revision f091e9f5 (taxeditor): #5061 Add force refresh of p2 repositories before checking for updates
- 04:03 PM Revision a9b5194c (taxeditor): Add button to open URLs in external browser (#5062)
- 03:54 PM Revision 9e1269fc (cdmlib): #5100 Fix default language for remoting
- 03:19 PM Revision fb1ea4dd (cdmlib): Fix delete to return null if node corresponding to uuid does not exist
- 03:10 PM Revision ea537ede (taxeditor): Fix Polytomous Key duplicate entry issue
- 02:24 PM Revision 991ee108 (cdmlib): Intialise addresses in declaration to avoid orphan cascade issue
- 12:54 PM feature request #4880: implement indicator that shows the amount/percentage of indexed cdm entities
- re-evaluate in 3.10
- 12:41 PM bug #4582: image gallery settings have no effect
- may become obsolete, see #5083
- 12:34 PM bug #4223: Advanced search returns unexpected results
- Handle together with search refactoring
- 12:17 PM feature request #3742 (Resolved): Display altitude, distance to Ground and watersurface correctly in dataportal
- 12:02 PM bug #3061: Lecototype typeReference not rendered correctly
- issue 1) is fixed issue 2) is still open
- 11:56 AM feature request #2985: Improve Specimen details display
- Review issue 1 in milestone 3.9. Issue 2 is not that important but probably fast to implement.
- 11:44 AM Revision 64564a32 (taxeditor): Rename aggregator to lib
- 11:13 AM Revision 8c601b0a (taxeditor): Add lib folder to dependency plugin
- 11:07 AM Revision 37c755a8 (cdmlib): Avoid concurrent modification during deep delete.
- - cloned derivation events of child derivatives
- added test - 11:05 AM bug #5104 (Closed): prevent MarkerTypes from being deleted when there are Marker entities using that type
- In the taxeditor it is possible to delete MarkerTypes even if this type is in use. Missing marker types are causing i...
- 10:55 AM Revision 562a6ac4 (cdm-dataportal): crosslinking the different admin sections regarding distributions
- 10:45 AM Revision a4d4f430 (taxeditor): Add missing properties file
- 10:27 AM Revision 104f6c96 (taxeditor): Integrate molecular plugins
- 09:39 AM Revision 9bc47800 (taxeditor): Add remoting operation / handlers for key list editor
07/21/2015
- 03:34 PM Revision fafcfbcb (taxeditor): New operation abstract class for merge
- 03:11 PM feature request #5088: Redirect automatically to according page when search result has exactly one matching item
- AK + AM: this makes sense for all searches except for the free text search.
So we will implement this feature for al... - 02:58 PM task #3749: Check if all molecular data is shown correctly in data portal [also DISCUSS]
- We need a general discussion how Campanula specimen portal and the generic specimen portal should interact/live in pa...
- 01:52 PM Revision 9e7acfac (taxeditor): Revert change for proxy since it breaks the name editor
- 01:46 PM Revision 399fd1a8 (taxeditor): Merge branch 'LibrAlign' into develop
- 01:10 PM Revision 568f7fa0 (taxeditor): Set security context for tests
- 12:45 PM Revision 3713d82e (taxeditor): Remove duplicate webapp war
- 12:38 PM Revision 1eb2001d (taxeditor): Enhance handling of simple and advanced media view
- - Buffer URI string in case of parsing errors
- disable toggling when media conists of more than one representation
... - 12:38 PM Revision e6712138 (taxeditor): Change color when error occurs
- 12:38 PM Revision 008510d1 (taxeditor): Disable Termeditor menu if CdmStore is disconnected
- 12:38 PM Revision 23a531ea (taxeditor): Add missing null check
- 12:38 PM Revision 244aacc4 (taxeditor): Remove cdmViewer extension usage
- 12:38 PM Revision 591b5a5a (taxeditor): Add @Override
- 12:38 PM Revision ad894907 (taxeditor): Set Visibility according to CdmStore connection
- 12:38 PM Revision 4c16f296 (taxeditor): Generalize cdmViewer extension point
- Refactored parameters to be based on commands.
- 12:25 PM Revision 9ca25430 (taxeditor): Fixed NPE when saving an alignment with a read without attached pherogram.
- 12:06 PM Revision 54108154 (taxeditor): #5098 : Fix issue with authentication when using search bar
- 11:41 AM Revision c076dec7 (cdmlib-apps): Fix compilation error in appimport
- 11:26 AM Revision 5aba9cda (cdmlib): Add support for ABCD 2.0.6 in UnitAssociationParser
- 11:19 AM Revision 2386ea10 (taxeditor): Enhance handling of simple and advanced media view
- - Buffer URI string in case of parsing errors
- disable toggling when media conists of more than one representation
... - 11:12 AM Revision 0fc5061e (taxeditor): Change color when error occurs
- 11:08 AM Revision 087a68ae (taxeditor): Disable Termeditor menu if CdmStore is disconnected
- 11:08 AM Revision 7697f64e (taxeditor): Add missing null check
- 11:08 AM Revision d54a2f48 (taxeditor): Remove cdmViewer extension usage
- 11:08 AM Revision e58a5e6b (taxeditor): Add @Override
- 11:08 AM Revision 517ffc77 (taxeditor): Set Visibility according to CdmStore connection
- 11:08 AM Revision 8e0d364a (taxeditor): Generalize cdmViewer extension point
- Refactored parameters to be based on commands.
- 10:42 AM Revision 6a3c8a34 (taxeditor): Correct tests to account for change in cache loader mechanism
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