Activity
From 06/07/2015 to 07/06/2015
07/06/2015
- 08:56 PM Revision 6bcf4c7f (cdmlib-apps): cacheUpdater Caryophyllales
- 08:54 PM Revision ff722416 (cdmlib): minor
- 06:34 PM Revision 7a4d764d (cdmlib): cacheUpdater Caryophyllales
- 05:48 PM Revision c239e0b3 (cdmlib): cacheUpdater for caryophyllales
- 05:17 PM Revision 09ded97c (cdm-dataportal): restoring white space which was lost due to an edit before.
- 05:14 PM Revision 7011a46f (cdm-dataportal): adapting test to changes which must have happened in cdmlib
- Cannot really reconstruct but the data shown in portal looks ok. More foonotes are magically shown. This must be a si...
- 04:51 PM Revision a38682a7 (cdmlib): Stash updated for bkp
- 03:59 PM bug #5063: Fix CoL import (split in parts++)
- Some first implementation handling DB based mapping and configurator for splitted import (not yet ready): [24713:24714]
- 03:51 PM bug #5063 (Closed): Fix CoL import (split in parts++)
- Currently the import is failing to import the hierarchy. Also performance is very bad, so we may want to improve the ...
- 03:59 PM Revision e5c282bc (cdmlib): Remove unneccessary check
- 03:49 PM Revision d823746c (cdmlib): Log exceptions during import in the report file
- 03:46 PM Revision 72f1cc5a (cdmlib-apps): Adapt ColDwcaImportActivator to latest import changes
- 03:45 PM Revision 9236bfec (cdmlib): Improve DwC-A import for large datasets
- 03:11 PM Revision 3156d799 (taxeditor): Display URI parsing errors
- 03:10 PM Revision 9f089935 (taxeditor): Remove comments
- 03:10 PM Revision d68a10c6 (cdm-dataportal): now really cleaning the target folder for selenium tests run via the headless-maven-tests.sh
- - this avoids accumulation of screnshots as jenkins artifacts
- 03:01 PM Revision 7b15b2e1 (cdm-dataportal): cleaning the target folder for selenium tests run by maven
- - this avoids accumulation of screnshots as jenkins artifacts
- 01:39 PM Revision d3746fc4 (cdmlib): Extend tests for GGBN import.
- Checking field unit data.
- 11:21 AM Revision 2b771a30 (cdm-dataportal): fixing layout issue with extra whitespace added by distributions status
- 10:25 AM Revision 881919d2 (cdm-vaadin): Adapt to changed 'save' call in services layer
- 10:04 AM Revision ff2ef28d (cdmlib): Merge branch 'master' into abcd
07/05/2015
07/04/2015
- 02:21 AM Revision 91593c59 (cdmlib-apps): minor
- 02:06 AM Revision 26868685 (cdmlib): minor
07/03/2015
- 10:29 PM Revision 6ebbd650 (cdmlib): Caryophyllales stuff
- 10:10 PM Revision 29f605f3 (cdmlib-apps): Caryophyllales stuff
- 06:25 PM Revision 1175f901 (taxeditor): #5054 Update Term Editor to be remoting compatible
- 04:26 PM Revision b4a380dc (taxeditor): AlignmentEditor.createTestContents() marked as deprecated.
- 01:23 PM Revision b5df9df2 (cdmlib-apps): Try to fix compile/merge error
- 01:21 PM Revision d182b05e (cdmlib-apps): Fix compiling error
- 01:16 PM Revision c5a20308 (cdmlib-apps): Merge remote-tracking branch 'origin/master'
- Conflicts:
cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/faunaEuropaea/FaunaEuropaeaDistributionImport.java - 01:08 PM Revision f84594b1 (cdmlib-apps): Clean FE Distribution Import
- 01:02 PM Revision 194e3888 (cdmlib-apps): Adapt FEimport to new save return type.
- 12:56 PM Revision cc12702e (cdmlib-apps): Adapt FEimport to new save return type.
- 12:52 PM Revision 53eff720 (cdmlib): Allow to split DwCA imports in parts (first steps)
- 12:48 PM Revision 6546f8b2 (cdmlib-apps): Split Col Activator in parts
- 12:48 PM Revision 6f9a99a3 (cdmlib-apps): Add new destinations
- 12:28 PM Revision 24adf92d (taxeditor): InternalError thrown, if a single read alignment shall be saved that contains new single reads, which have been added in the AlignmentEditor. (Implementation does not make sense before the decision whether #4740, #4745 or #4746 shall be implemented.)
- 12:20 PM Revision eaa4e421 (taxeditor): Error message added, if a pherogram URL loaded from CDM cannot be processed correctly.
- 12:09 PM Revision 85cfbf6f (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/TaxonEditorInput.java - 12:09 PM Revision eacfe31f (taxeditor): Fixed NPE, if a single read has a pherogram object without URI.
- 12:04 PM Revision 2c5de69d (taxeditor): #5056 Adapt editor to service layer 'save' method refactoring in cdmlib
- 12:01 PM Revision 26b857a9 (cdmlib): #5056 Refactored 'save' call to return saved entity
- 11:44 AM Revision bb1997d0 (taxeditor): #5054 Integrate remoting session in Term Editor
- This commit also fixes a loading bug in the CdmServiceCacher, adds a test for creating term vocabulary and adapts to ...
07/02/2015
- 03:57 PM Revision 5060cf7d (cdmlib-apps): Improve BfnXmlImportActivator
- 03:51 PM Revision b5e25778 (cdmlib-apps): New or changed destination
- 01:15 PM feature request #5055 (Closed): Integrate Luna installation instruction into standard installation instructions
- Standard instruction for installing the Editor Deverloper environment can be found at http://cybertaxonomy.eu/taxedit...
- 01:11 PM Revision 1f2cc436 (taxeditor): Adjustments to recent changes in LibrAlign.
- (The additional project https://secure.bioinfweb.info/Code/svn/LibrAlign / trunk / main / info.bioinfweb.libralign.bi...
- 11:39 AM Revision 487e442c (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServic... - 11:21 AM Revision 3c4d1aba (taxeditor): Make editor compatible with latest cdmlib service layer updates
- 11:01 AM Revision 233a8fe2 (taxeditor): #5012 Adding remoting session and updating save methods for Bulk Editor
- Replace properties file with xml file
#5012 updates for making Bulk Editor remoting capable - 10:58 AM Revision ddf0581b (cdmlib): #5012 Add service layer updates for remoting calls from the Bulk Editor
- 10:16 AM Revision 21938046 (cdmlib): removed named areas to avoid test failure
- 09:50 AM Revision 9950252b (cdmlib): Add test for importing two dna units with associated units
- 09:50 AM Revision 578ebc1e (cdmlib): Reset prefix after importing associated units
- 09:50 AM Revision 32512895 (cdmlib): Do not close system.out
- 09:49 AM Revision 3494aea3 (cdmlib): Add test for importing two dna units with associated units
- 09:47 AM Revision 1b4d595b (cdmlib): Reset prefix after importing associated units
- 09:46 AM Revision 46713e68 (cdmlib): Do not close system.out
07/01/2015
- 06:06 PM Revision 36f17651 (taxeditor): Minor changes in implementation of AlignmentEditor.
- 06:03 PM Revision 70ab6696 (taxeditor): ShowPherogramHandler now also handles single reads without attached pherograms.
- 05:44 PM Revision 93e9b94f (taxeditor): Fix compile error in FeatureDistributionDetailElement
- 05:34 PM Revision 1ef6ef7a (taxeditor): Support for empty alignments and single reads without pherograms added to AlignmentEditor.
- DerivateLabelProvider now used to label single read sequences.
- 03:45 PM Revision 1d706311 (cdmlib): test for fallbackArea rule in DescriptionUtility.filterDistrubution for EuroPlusMed - #4408
- 03:01 PM Revision 3f10973b (cdmlib): implementing fallbackArea rule into DescriptionUtility.filterDistrubution for EuroPlusMed - #4408
- 03:01 PM Revision a0d252eb (cdmlib): adapting tests to changes in EuroPlusMedCondensedDistributionComposer and DescriptionUtils
- - testGetWebServiceUrlCountry() : removing restriction on specific order of area status parameters
- testGetConde... - 12:28 PM Revision 7508605c (cdm-dataportal): implementing a new hook to alter the merged taxon profile feature tree
- 11:52 AM Revision 18727898 (cdm-dataportal): distributions now with status information
- - status hidden per css
- status label on area active on mouse hover - 11:50 AM Revision f78fda81 (cdm-dataportal): code documentation cosmetics
- 11:42 AM Revision cb1e8099 (cdmlib): Ignore createTestData()
- 11:38 AM Revision 4e838f9b (cdmlib): Add accidentally removed test file
- 11:34 AM Revision 5e20d614 (taxeditor): Class path edited to include new modules from LibrAlign and TIC.
- 11:31 AM Revision fa849b89 (taxeditor): Adjustments to recent architecture changes in TIC and LibrAlign. (TIC top level project referenced from now on.)
- The following projects need to be checked out into the workspace from now on:
- https://secure.bioinfweb.info/Code/sv... - 11:09 AM Revision 136811ac (taxeditor): merge-update from trunk
- 11:04 AM Revision 84ab49d7 (cdmlib): Extend step-by-step deletion test
- - Used correct single read deletion method.
- Created test file - 10:55 AM Revision eeb06b41 (cdmlib): Soften association type matching.
- 10:55 AM Revision 8d1e4195 (cdmlib): Map preparation material to derivation event description
- 10:55 AM Revision 9577e96c (cdmlib): Test import of sparse ABCD file
- 10:55 AM Revision 2d73d2e2 (cdmlib): Fix potential NPE
- 10:55 AM Revision 5aa71050 (cdmlib): Add method for single read deletion
- 10:55 AM Revision a1d53662 (cdmlib): Fix singleton constructor with specimen types
- 09:44 AM Revision 94465d21 (taxeditor): Fix deletion of single reads in Derivative Editor
- 09:44 AM Revision 1bdc3970 (taxeditor): Add missing transient method
- 09:28 AM Revision ca363adb (cdmlib): Do not set consensus sequence of single read alignment to null when
- deleting the alignment
- 09:27 AM Revision 50cb78ae (cdmlib): Add delete method for SingleReads
- 09:27 AM Revision 24422e7d (cdmlib): Remove comments
- 09:23 AM Revision 6747184a (taxeditor): Map preparation materials to derivation event description
06/30/2015
- 04:09 PM feature request #5050 (Resolved): revise the subAreaPreference rule for filtering Distributions
- fixing all issues mentioned in this ticket:
* [r24598 applying subAreaPreference rule exclusively for maps|* r24597]... - 10:50 AM feature request #5050 (In Progress): revise the subAreaPreference rule for filtering Distributions
- 10:33 AM feature request #5050 (Closed): revise the subAreaPreference rule for filtering Distributions
- The _subAreaPreference_ rule for filtering Distributions is implemented in the `DescriptionUtility.filterDistribution...
- 04:05 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- there was a bug with the sub areas labels, which is fixed now:
* r24601 - correcting the cleanup of sub areas labes... - 10:40 AM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- I created a new ticket for the issues with the subAreaPreference rule #5050
So that this ticket can be in principle ... - 04:04 PM Revision 8690cfe6 (cdmlib): correcting the cleanup of sub areas labes in condensed distributions
- 03:40 PM Revision 4a983d6e (cdmlib): applying subAreaPreference exclusively for maps
- 03:40 PM Revision eb4c21f9 (cdmlib): subAreaPreference Rule can be run completely separately
- - also reoving old unused code
- removing documentation on osoltete rule
- removing all missleading errors on... - 03:17 PM Revision bdc49784 (cdmlib): Fix potential NPE
- 03:04 PM Revision 9efdbc29 (taxeditor): merge-update from trunk
- 02:34 PM Revision d6feff56 (taxeditor): Add check to display statistice only when cache is alive
- 01:47 PM Revision 23a2223a (taxeditor): Make background of icon transparent
- 01:21 PM Revision 18c0b932 (cdmlib): Evaluate unit association type in ABCD import
- - added test
- correctly set derivative hierarchy - 11:27 AM feature request #4366 (In Progress): Transmissionengine Distribution: implement rules for source references
- 11:27 AM bug #4134 (In Progress): Transmissionengine Distribution seems to miss distributions for higher Taxa
- 09:49 AM Revision e0084606 (cdmlib): Check if primer or amplification already exist
- 09:49 AM Revision adab4473 (cdmlib): Evaluate UnitAssociationType during import
- Current rule for the relation between the imported unit and its
associated units:
- "same population" => sibling rel... - 09:49 AM Revision 921e3d54 (cdmlib): Add find- and countByTitle() methods to primer and amplification service
- 09:49 AM Revision 3a97226d (cdmlib): Split up test for unit associations
- 09:49 AM Revision cc19179c (cdmlib): Fix potential NPE
- 09:49 AM Revision e8255db1 (cdmlib): Parse sample designation in ABCD GGBN import
- 09:49 AM Revision 7920002e (cdmlib): Move up name parsing
- 09:49 AM Revision ed743b53 (cdmlib): Import associated units
- - Set derivation event correctly
- adapted test - 09:49 AM Revision 7b3adf28 (cdmlib): Import associated units via BioCase query
- 09:49 AM Revision 87460b5e (cdmlib): Move prefix parsing to utility method and import state
- 09:49 AM Revision c95e3daf (cdmlib): Move unit parsing to utility class
- 09:49 AM Revision 2574e41b (cdmlib): Import associated units in ABCD import
- Worked on the order of importing units especially when associated units
are present.
Adapted test. - 09:49 AM Revision bbf54111 (cdmlib): - added missing columns for derivative import
- 09:49 AM Revision 891ced88 (cdmlib): ??
- 09:49 AM Revision 47f461b2 (cdmlib): Adapt to method parameter change
- 09:49 AM Revision 631a9c22 (cdmlib): Import associated units in ABCD import
- First changes
- 09:49 AM Revision 64260466 (cdmlib): Refactor ABCD import
- Moved class variables to import state
- 09:49 AM Revision 3f1d496b (cdmlib): - fixed date parsing
- - fixed primer saving
- added new parameters to test - 09:49 AM Revision 0fff86a8 (cdmlib): - added preservation/preparation parameters
- - fixed parsing of unitID
- 09:49 AM Revision 25cbf231 (cdmlib): - correctly connected primer, amplification, single reads and sequences
- - parsed UnitAssociation to correctly set specimen data
- added UnitAssociationParser - 09:49 AM Revision 2bc696d1 (cdmlib): - refactored dna parsing
- - added utility classes and person parser
- adapted test
- added parsing of more molecular parameters - 09:33 AM bug #5048 (Closed): cdm-server causes unusual high native memory consumption for jvm
- Our cdm-server are suffering from memory problems! Evidence for this can bee seen st least since the middle of last w...
- 08:27 AM feature request #5047 (Duplicate): option to show empty distribution maps
- Hallo
es sollte die Karte auch angezeigt werden, wenn keine Distributionsdaten vorhanden sind. Hintergrund: ich ...
06/29/2015
- 11:31 PM Revision 006a8952 (cdmlib-apps): latest changes to BfN Import
- 09:38 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- und nun zu Punkt 1) hierzu gibt es anscheinend widersprüchliche Anforderungen und weitere Tickets:
**1. #3904 Euro... - 09:07 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- 3.)
> vor Br und Hs(S) fehlt das kleine n. (nBr, nHs(S))
fixed by correctly assigning INTRODUCED_NATURALIZED to ... - 05:54 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- Replying to [[comment22|a.kohlbecker]]:
1.)
> dass z.B Au(A) und Au(L) nicht zu Au(A L) zusammengeführt wurden. En... - 12:08 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- Hallo Eckhard,
so, der Import ist gelaufen, es kann jetzt getestet werden.
Was ich auf http://test.e-taxonomy.eu/... - 09:06 PM Revision ee91f8de (cdmlib): correctly assigning INTRODUCED_NATURALIZED to n=naturalizes for condensed distribution - #3907
- 06:49 PM Revision 3eacaedc (cdmlib-apps): Add rl_animalis datasource
- 06:46 PM Revision d58180a5 (taxeditor): Add missing file from last commit
- 06:44 PM Revision e9c96f29 (taxeditor): #5010, #5046 Integrate remoting in polytomous key editor
- 05:58 PM Revision a06a017b (taxeditor): Move test file to correct location
- 05:44 PM Revision e962bf9d (cdmlib): fixing sort order in condensed distribution - #3907
- 05:44 PM Revision e8cfab4d (cdmlib): removing obsolete warning from log - #3907
- 04:49 PM Revision 9a23effa (cdmlib): #5009 Add service method to update all nodes
- 04:32 PM Revision 6018d7fe (cdmlib): fixing bug that occurred with empty distributions- #5041
- 04:09 PM Revision 0a72efb6 (taxeditor): #5009 Update plugin to use remoting handlers
- 04:02 PM Revision 12f71b09 (taxeditor): Add icon for switching to advanced media view
- 03:25 PM Revision 3419670f (taxeditor): merge-update from trunk
- 03:21 PM Revision 75291bc4 (taxeditor): Rename classes according to convention
- 03:21 PM Revision 5fe42cdd (taxeditor): #5009 : Add handler for update all nodes operation
- 03:20 PM Revision 410227bb (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.cdmlib/src/main/java/eu/etaxonomy/cdm/api/lazyloading/CdmLazyLoader.java
eu.etaxo... - 03:20 PM Revision 510d3be7 (cdm-dataportal): fixing position of name relationships for the accepted taxon - #5038
- 02:54 PM Revision 41b4bfc9 (cdm-dataportal): implementing display of name relationships for the accepted taxon - #5038
- 02:53 PM Revision 3e1ed38c (taxeditor): Update transient services with new delete method
- 02:39 PM Revision 501725be (taxeditor): merge-update from trunk
- 02:31 PM Revision 91a8d98c (taxeditor): #5009 Add operations and corresponding tests for delete / update nodes actions
- #5009 : missed in last commit
- 02:31 PM Revision fc14119f (taxeditor): #5009 Correct test and test data
- 02:31 PM Revision 986bf16c (taxeditor): #5009 Add delete handler / operation for polytomous key view with corresponding test class
- 02:30 PM Revision c4756086 (cdmlib-apps): Change redlist local logins
- 02:29 PM Revision 8783a193 (cdmlib-apps): Add redlist animalia datasource
- 02:28 PM Revision 5901681d (cdmlib): Add default delete method for uuid collections and implement update nodes method in polytomouse key service
- 02:26 PM Revision 275ada95 (cdmlib-apps): Remove local diptera db from destinations
- 02:26 PM Revision 72060b99 (taxeditor): Show abbreviated title cache for authors and refernce in taxon details
- view
- 01:48 PM Revision a0b6521f (cdmlib-apps): Minor improve E+M import
- 01:47 PM Revision 191f2328 (taxeditor): Show URI parsing exceptions below URI text field (fixes #5055, #5003, #4587)
- 01:45 PM Revision 7cb50f58 (taxeditor): Avoid duplication of edited team member (#4997)
- 01:43 PM Revision d04de77a (taxeditor): Add no marker without a markerType (#4588)
- 01:41 PM Revision 6296db4b (taxeditor): Add ticket number to TODO
- 01:35 PM Revision 0409a9a0 (taxeditor): Refresh view after media view has been switched
- 01:35 PM Revision 91eae82f (taxeditor): Add MediaViewSwitch to media collection elements
- Refactored code to use a static method that creates the IAction object.
This can be added by the GUI element itself. - 01:35 PM Revision da32e3d6 (taxeditor): Add button for advanced media view to media attached to desccriptions
- 01:35 PM Revision 025f1554 (taxeditor): Remove duplicate code for advanced media view (#4862)
- Refactored code and added interface and abstract class to avoid
duplicate code. - 01:35 PM Revision a77acb74 (taxeditor): Remove comments
- 01:14 PM Revision b99ec95c (taxeditor): Remove comments
- 01:14 PM Revision 2b7c8786 (taxeditor): Fix typo
- 01:13 PM Revision c685c176 (cdmlib): Further fix DistributionTree.matchesLevels #5041
- 12:47 PM Revision bb2ee826 (taxeditor): Move xml validation to base test class
- 11:24 AM Revision 971b7c3a (taxeditor): Remove manual session creation and re-enable failing tests
- 11:14 AM Revision 43854311 (taxeditor): Ignore failing tests to check if other tests fail
- 10:40 AM Revision 90dae518 (taxeditor): Add logs to debug test issue on integration jenkins
06/28/2015
- 04:51 PM Revision 7d53a990 (cdmlib): Fix DistributionTree.matchesLevels #5041
- 02:32 PM Revision 1eece533 (cdmlib): Fix label order marker types in imports
06/27/2015
- 03:13 PM Revision be19c04e (cdmlib): Fix ClassCastException in call to distributionInfo service #5041
06/26/2015
- 10:41 PM Revision 0cf0b572 (taxeditor): Fix test by making sure that all entities are loaded in sessions
- 09:28 PM feature request #3904: EuroMed: Implement filtering rules for distributions
- New area hierarchy implemented by r24461
- 05:45 PM feature request #3904 (New): EuroMed: Implement filtering rules for distributions
- Hallo Eckhard,
in meiner Datenbank wurden die _E+M Areas_ am 20 Mai 2015 angelegt, sind also relativ aktuell.
Für ... - 09:26 PM Revision 4a5ee6fe (cdmlib-apps): Adapt EM area hierarchy to filtering rules #3904
- Also moving hidden area functionality from activator to occurrence
import class. - 09:25 PM Revision 57df1e7e (cdmlib): Add getTermByIdInVoc method to vocabularies
- 08:04 PM Revision bad845a9 (cdmlib): Improve transmission engine parameters for web service (#5040)
- 08:03 PM Revision 52f172cb (cdmlib-apps): Improve transmissionengine parameters in E+M import activator #3979
- 08:01 PM bug #5040 (Closed): Allow transmission engine webservice to define area level
- Currently the namedAreaLevel to be used for transmission engine is hardcoded to TDWGLevel3 in DescriptionListControll...
- 07:46 PM Revision 7dadeb2b (cdmlib-apps): Update hidden area list #3979
- 07:27 PM Revision a34899e5 (cdmlib-apps): Cleanup Flora Malesiana configurator
- 07:24 PM Revision 3b077794 (cdmlib): Fix umlaut bug in parser test
- 07:00 PM Revision c16ec678 (cdmlib): Fix unparsed sections and subsections #4764
- 06:57 PM bug #5039 (New): Update script for section.idInVoc to include (bot.)/zool.
- Section and Subsection idInVoc has been taken from abbrev label. Those databases which switched abbrevLabel to purely...
- 06:04 PM Revision 8a0d251d (taxeditor): Remove unnecessary call to session debugger
- 05:49 PM Revision 000c4b35 (taxeditor): #5036 Add missing command for polytomous key delete
- 05:09 PM Revision 0a7bd050 (taxeditor): #5034 Add tests for handler / operations architecture
- Fix test
- 05:02 PM Revision 42358e6e (taxeditor): Adjustments to recent changes in TIC. (EDITor Code from now on written against unreleased TIC 2.x.)
- 04:38 PM Revision 610855da (cdmlib): #5034 Add methods for testing handler / operations architecture
- 03:28 PM Revision 0f7684f6 (cdm-dataportal): avoiding extra spacing added by legends below map - #4166
- 03:12 PM Revision 112716b9 (taxeditor): Fix LanguageString issue with test data
- 03:11 PM Revision bb3317c0 (taxeditor): Add log4j extras to apply expression filters
- 01:45 PM Revision 1f36c510 (cdm-dataportal): avoiding extra spacing added by legends below map - #4166
- 12:20 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- r24443 documentation on the condensed distribution
* help page
* info icon next of the condensed distribution sti... - 12:19 PM Revision 423486b0 (cdm-dataportal): documentation on the condensed distribution - #3907
- - help page
- info icon next of the condensed distribution sting on the taxon page - 12:02 PM Revision 79b2f591 (cdmlib): Fix updateSortindex test for TaxonNode javassist objects
- 11:37 AM Revision 721dde11 (taxeditor): Move test data to be compatible with last commit
- 11:34 AM Revision bdde50e7 (taxeditor): Move test classes to right packages
- 11:24 AM Revision 933331e0 (cdmlib): #5032 Add new test service for remoting clients
- 11:20 AM Revision 44acc7e5 (taxeditor): #5028,#5032 Add implementation and use of new test service and Set http invoker read timeout to 0 (never )
- 09:58 AM Revision a5d56f1e (cdm-dataportal): aligning test data with changed field names *AuthorTeam -> *Authorship #4968
- 09:56 AM Revision b85d5cc1 (cdm-dataportal): aligning test data with changed field names *AuthorTeam -> *Authorship #4968
06/25/2015
- 11:56 PM Revision 6a6ae886 (cdmlib): Fix possible but in FeatureNode sortindex creation
- See similar issue in TaxonNode sortindex creation.
- 11:47 PM Revision f37d249f (cdmlib): minor
- 11:40 PM Revision 2fb0b459 (cdmlib): minor
- 11:40 PM Revision 3a35f0e6 (cdmlib): Fix sortindex computation in TaxonNode
- After commit from 2015-06-18 the sortindex was computed slightly
different. In some cases the parent was not deproxie... - 11:13 PM feature request #3907 (Resolved): EuroMed: implement condensed "status" string of distribution information
- r24431 condensed distribution implemented in dataportal
this feature is now ready to be reviewed
@Eckhard:
1. B... - 06:41 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- r24428 : some bugfixes in CondensedDistribution composition code
- 04:34 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- cdmlib part implemented:
* [r24423 composition of condensed distribution fully implemented - #3907|* r24422] base... - 03:25 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- **Overview on the distribution status which are actually used int Euro+Med:**
_The unused status are separated fr... - 11:00 PM Revision bda17f32 (cdm-dataportal): condensed distribution implemented - #3907
- - option in taxon page settings to enable the condensed distribution string
- native areas in bold by css - 11:00 PM Revision 0d2c9bab (cdm-dataportal): fixing #4977: advanced search with distribution filter is broken
- 10:20 PM Revision f90b297d (cdmlib-apps): Add error handling to Euro+Med Activator #3979
- 09:50 PM Revision dec0b265 (cdm-dataportal): fixing location and content of a settings decription
- 06:39 PM Revision c59da264 (cdmlib): some bugfixes in CondensedDistribution composition code - #3907
- 05:21 PM Revision c8d37de7 (taxeditor): Fix remoting code compilation errors
- 04:30 PM Revision 8a2faa05 (cdmlib): minor documentation cleaning
- 04:30 PM Revision ae5c7985 (cdmlib): composition of condensed distribution fully implemented - #3907
- 04:30 PM Revision 0570a827 (cdmlib): base framework for condensedDistributions implemented - #4911
- 04:30 PM Revision 03c4eee9 (cdmlib): performance: avoiding second distribution filtering when creating the DistributionServiceRequestParameterString - #4911
- 04:30 PM Revision 85976c83 (cdmlib): replacing 'non-java-doc by {@inheritDoc}
- 04:20 PM Revision 7115f486 (cdmlib-apps): Cleanup BfnXmlImport
- 03:34 PM Revision 4cea6554 (taxeditor): Fix remaining test erros for collection call changes from #5031
- 03:12 PM Revision 9b7145e0 (cdmlib): Clean up transmission engine and BerlinModelTransformer
- 03:11 PM Revision 9a6fb38b (cdmlib-apps): Improve E+M-Activator and E+M occurrence import
- 02:46 PM Revision e09f9c40 (taxeditor): #5031 Update remoting code to be compatible with new common service collection calls
- 02:21 PM Revision 3e0da563 (cdmlib): #5031 Corrected common service / dao collection methods to use uuid + fieldName
- 12:34 PM feature request #5030 (Duplicate): Implement new dto object for TaxonNavigator
- Since the performance of the taxon navigator is quite slow when remote loading taxon nodes, it is required to have a ...
- 10:31 AM Revision e74b4be3 (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- 09:36 AM Revision 06abbea1 (cdmlib): Fix classloading priority of patched hibernate class
- 09:36 AM Revision 61e836d6 (cdmlib): #5025 : Add new cdm entity identifier object and use case in taxon node service
- 01:14 AM Revision 89dc0db4 (cdmlib-apps): Improve E+M import post methods #3979
- 01:10 AM Revision b4027377 (cdmlib): Improve E+M post import methods #3979
- 01:08 AM Revision 249ab8e3 (cdmlib-apps): Improve E+M import for transmission engine #3979
- 01:08 AM Revision e6e385c2 (cdmlib): Improve distribution transmission engine for E+M import #3979
06/24/2015
- 06:53 PM Revision 7f777e9c (cdmlib-apps): Add users and roles to E+M import #3979
- 06:52 PM Revision c31b52c2 (cdmlib): Add publisher role uuid and clean up FirstDataInserter #3979
- 05:42 PM Revision ea7b7584 (taxeditor): #5025 : Implement load of UpdateResult using new cdm entity identifier
- 05:12 PM Revision a96b340e (cdmlib-apps): Add hidden areas to Euro+Med import #3979 .5
- 05:11 PM Revision 31e6213c (cdmlib): Add hidden area related UUIDs to BerlinModelImport #3979 .5
- 04:46 PM Revision 514f7053 (cdmlib-apps): Add E+M shapefile attributes import to E+M import #3979
- 04:39 PM Revision 86e3fef5 (cdmlib): Add E+M vocabulary uuid to E+M-Transformer
- 03:30 PM Revision 5eb0a68d (cdmlib): Add isImport request to import configurator
- 03:28 PM Revision c4f9c344 (cdmlib-apps): Add Distribution transmission engine to E+M import #3979
- 03:25 PM Revision abc846c0 (cdmlib-apps): Cleanup Euro+Med Activator
- 02:57 PM task #4911: improve performance of distributionInfoFor service
- this was not closed in Release 3.5.2
Applying another improvement which is only in git at the moment: d798947 (UPDA... - 02:19 PM Revision 5bf5b601 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- 02:19 PM Revision 297bf978 (taxeditor): Empty text fields return empty string and not null
- 02:17 PM Revision 8d268297 (cdmlib): #5025 : Add CdmBase id+Class objects to UpdateResult
- 01:08 PM Revision b1f9db96 (taxeditor): Revert "index on develop: 6992bef Rename NonViralName authorteams to authorship #4968"
- This reverts commit 32cded397931ad359f7818fdfb91a113a074342e.
- 11:41 AM feature request #3907 (In Progress): EuroMed: implement condensed "status" string of distribution information
- 11:38 AM Revision d1f86977 (cdm-vaadin): cdmlib.version updated to 3.6.3-SNAPSHOT making use of the new profile 'align-cdmlib-version'
- 11:24 AM Revision ff4582ba (cdm-vaadin): mvn profile 'align-cdmlib-version' with maven-replacer-plugin to update the cdmlib.version property
- - this profile can be activated by supplying -Dalign-cdmlib-version as argument to the mvn command
for example: mvn... - 09:40 AM Revision 19a8bfe7 (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF
eu.etaxonom... - 09:26 AM Revision 3237a360 (taxeditor): Enable tests again
- 09:06 AM Revision 698cfb0e (taxeditor): #4074 : Fix initialisation, use and disposal of mocke session owner
06/23/2015
- 06:47 PM Revision 472bf5b2 (cdmlib-apps): Adapt pom to new version in cdmlib-app
- 06:39 PM Revision 48014773 (cdmlib-apps): Rename NonViralName authorteams to authorship #4968
- 06:34 PM Revision 6992befa (taxeditor): Rename NonViralName authorteams to authorship #4968
- 06:22 PM Revision 8b7b09a5 (taxeditor): Update cdmlib version to 3.6.3-SNAPSHOT
- 06:13 PM Revision e62f0e9d (taxeditor): Fix initialisation of mock session owner
- 05:58 PM Revision 4851a3ca (taxeditor): Some actions for adjusting pherogram displaying added.
- 05:56 PM Revision a067b731 (cdmlib): Solve merge conflict for CdmTransactionalIntegrationTest
- 05:56 PM Revision bd8e017a (cdmlib): Cleanup dao test classes
- 05:56 PM Revision 236ab161 (cdmlib): Rename remaining occurrences of xxxAuthorTeam #4968
- Rename remaining occurrences of combinationAuthorTeam and
basionymAuthorTeam in code and other files - 05:56 PM Revision ce7c7aa3 (cdmlib): Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968
- 04:56 PM Revision 7beeb84b (cdmlib): 3.6.2 has just been released, setting version to 3.6.3-SNAPSHOT
- 04:53 PM Revision 10672e78 (cdmlib): Fix ignored test in TaxonDaoHibernateImplTest #2815
- 04:50 PM task #5022: Check for dependencies from codehaus.org
- second candidate: com.itextpdf:itextpdf.jar:5.0.2
- 11:23 AM task #5022: Check for dependencies from codehaus.org
- First candidate is yjp-controller-api-redist and this has been uploaded to the EDIT MAven repository - http://cyberta...
- 11:21 AM task #5022 (Closed): Check for dependencies from codehaus.org
- With the shutdown of codehaus.org the dependencies which were being downloaded from codehaus (http://dist.codehaus.or...
- 03:25 PM Revision 76b05b1c (cdmlib): #5007 : Correct setting of updated objects when deleting taxon
- 03:06 PM Revision 9632d60d (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.navigation/src/main/java/eu/etaxonomy/taxeditor/navigation/navigator/TaxonNodeComp... - 02:45 PM Revision c555b209 (taxeditor): Delete renamed file
- 01:26 PM Revision 4cf77d2c (cdmlib): Fix ignored test in DescriptionElementDao #2815
- Remaining tasks
- 01:18 PM Revision 530ba367 (taxeditor): Fix remaining conflict
- 01:15 PM Revision d2fa54b8 (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/operation/DeleteTaxonOpera... - 01:11 PM Revision 76456771 (taxeditor): PherogramViewPart that is started from within AlignmentEditor now uses a shared pherogram model to display cut positions.
- 01:01 PM Revision ea8a5aa2 (taxeditor): Fix issues with merge conflicts
- 10:39 AM Revision 20b683b4 (cdm-webapp): notes on a possible solution to the auto-clean problem
- 10:31 AM feature request #5021 (Rejected): TreeNodeDropAdapterAssistant should use RemotingMoveTaxonNodeHandler
- Currently the TreeNodeDropAdapterAssistant duplicates most of the functionality implemented in the RemotingMoveTaxonN...
- 10:28 AM Revision b090df35 (taxeditor): #5007 : Rename move taxon node handler
- 10:27 AM Revision b42ce39a (cdm-webapp): bumping cdm dependencies to 3.6.3-SNAPSHOT
- 10:25 AM Revision a359b43b (cdm-webapp): solving conflict in cdmlib version
- 10:25 AM feature request #5020 (New): [MASTER] Refactor / Redesign
- This ticket consists of the sections of editor code which should be refactored or redesigned
- 10:22 AM Revision 7a1c4784 (cdm-webapp): merging release/3.6.2
- 10:18 AM Revision a1056a0c (cdm-webapp): explanation why auto-clean is disabled
- 10:16 AM Revision eb2adc6c (cdm-server): [maven-release-plugin] prepare for next development iteration
- 10:16 AM Revision 2263c567 (cdm-server): [maven-release-plugin] prepare release cdm-server-3.6.2
- 10:09 AM Revision 790395af (taxeditor): Fixes from Katja for commit issue
- 09:40 AM Revision fd336918 (cdm-webapp): updating poms for branch'release/3.6.2' with non-snapshot versions
- 09:39 AM Revision f3d07c11 (cdm-webapp): disabling auto-clean, it otherwise deletes the artifact to be deployed
- 09:31 AM Revision 6c511765 (taxeditor): #5007 : Integrated remoting handler / operations for taxon navigator ui
06/22/2015
- 06:21 PM Revision 6dbfba88 (taxeditor): Position properties of LibrAlign pherogram models are now connected to according CDM node properties (yet untested).
- 06:02 PM Revision 6fa9c9e0 (cdmlib): Cleanup Identifiable service
- 05:15 PM Revision 9be6a364 (cdm-webapp): setting dependencies to 3.6.2
- 05:12 PM Revision 196c706d (cdm-webapp): updating poms for 3.6.3-SNAPSHOT development
- 05:12 PM Revision c2dbd664 (cdm-webapp): updating poms for 3.6.2 branch with snapshot versions
- 05:03 PM Revision f2608024 (cdm-webapp): configuring project for jgitflow-maven-plugin
- 05:00 PM Revision 525b64ac (cdm-webapp): udating the versions to 3.6.2-SNAPTSHOT, since 3.6.1 has release already
- 04:58 PM Revision b13da0b9 (taxeditor): #5007 : Add remoting handler / operations for the taxon navigator
- 04:36 PM Revision ae85a8ea (taxeditor): Fix problem with non persisted taxon titleCache change: #5018
- 03:57 PM Revision 496b2672 (cdm-vaadin): Updating develop poms back to pre merge state
- 03:57 PM Revision f41f0a13 (cdm-vaadin): Merge branch 'master' into develop
- 03:57 PM Revision 397817ea (cdm-vaadin): updating develop poms to master versions to avoid merge conflicts
- 03:57 PM Revision f3bd3381 (cdm-vaadin): Merge branch 'release/3.6.2'
- 03:50 PM Revision 2f56c6db (taxeditor): adapt service call to model change
- 03:49 PM Revision e1623027 (taxeditor): adapt transient service methods to cdmlib changes
- 03:48 PM Revision 4c33ecde (cdm-vaadin): updating poms for branch'release/3.6.2' with non-snapshot versions
- 03:33 PM Revision 3bf96cb2 (cdmlib): updating version for release 3.6.2
- 02:58 PM Revision 92e4b107 (taxeditor): - update parent scroll form on property change (fixes #4881)
- 02:58 PM Revision ff0e2f7c (taxeditor): - removed initial expand of sections
- 02:58 PM Revision b48bc2d5 (taxeditor): - fixed potential NPE
- 02:58 PM Revision 015a151c (taxeditor): - fixed potential NPE
- 02:58 PM Revision 3128f1e0 (taxeditor): - changed type of "Materials & Methods" to text instead of DefinedTerm
- - fixed label
- 02:58 PM Revision c0c6e635 (taxeditor): - split off "Preparation/Preservation section" from dna sample general
- section
- 02:41 PM Revision a4bd052f (cdmlib): Copy DeterminationEvent data when moving derivates
- 01:16 PM Revision c951d62c (taxeditor): Adjustments to recent changes in LibrAlign.
- 12:51 PM Revision c36e67ab (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/referencingobjects/Refe... - 11:51 AM Revision fc873cb0 (cdmlib-apps): Fix pesi and app-imports pom version
- 11:38 AM Revision 0f2408d8 (cdm-vaadin): upgrading the cdmlib dependency to 3.6.2
- 11:31 AM Revision 1706bc52 (taxeditor): fixed conflicts from last commit
- 11:30 AM Revision 562118a0 (taxeditor): all delete methods need an Uuid as argument
- Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServic... - 11:27 AM Revision 45dcb303 (cdmlib-apps): Fix eflora pom version
- 11:25 AM Revision 812371a9 (cdm-vaadin): updating poms for 3.6.3-SNAPSHOT development
- 11:23 AM Revision e6ed7de3 (cdm-vaadin): disabling pushReleases true for testing
- 11:21 AM Revision faadd8d7 (cdm-vaadin): resetting project version to 3.6.2-SNAPSHOT
- 10:52 AM Revision 6a0c3c1d (taxeditor): change delete argument to UUID
- 10:33 AM Revision 32b21ed7 (cdmlib): bumping project version to 3.6.2-SNAPSHOT, 3.6.1 has already been released
- 10:33 AM Revision 4cbd3451 (cdmlib): bumping project version to 3.6.2-SNAPSHOT, 3.6.1 has already been released
- 10:32 AM Revision 44993ce4 (taxeditor): add empty test folder
06/19/2015
- 07:30 PM feature request #5016 (New): Use asynchronous loading for images
- Loading images for image rich higher taxa takes time. We may try to improve performance by spliiting loading into
... - 07:22 PM feature request #5015 (New): Use treeindex for loading of aggregated images
- Loading images for image rich higher taxa takes time. We may try to improve performance by using the treeindex
... - 04:19 PM task #4338 (New): [MASTER] Handle abbreviated title and protected cache correctly in TaxEditor
- 03:20 PM Revision 83a1a479 (taxeditor): TaxonNavigator : added refresh of navigator on data change
- TaxonNavigatorLabels : new interface with label strings used by taxon navigator handlers
RemotingChangeAcceptedTaxonT... - 03:15 PM Revision 61fc1843 (taxeditor): add empty test folder
- 03:06 PM Revision 1643e04c (taxeditor): fix 2 of the merge issues
- 02:51 PM Revision 92e55e8b (cdmlib): fix titleCache for et al. teams #4967
- 02:45 PM Revision a52587ac (cdm-vaadin): fixing bug with pushReleases
- 02:34 PM Revision 842b5671 (cdm-vaadin): Updated cdmlib version in pom of develop branch to 3.6.2-SNAPSHOT
- 02:34 PM Revision 7ba31d29 (cdm-vaadin): updating poms for 3.6.3-SNAPSHOT development
- 02:34 PM Revision 9893a3ce (cdm-vaadin): Changed project version to 3.6.2-SNAPSHOT
- 01:46 PM Revision 348a9e4c (cdmlib): add non-absolute test to isServiceAvailable #4587
- 01:06 PM Revision 80607d26 (cdm-vaadin): upgrading dependency jsch.agent.version of jgit-flow plugin to 0.1.53 in order have ssl key exchange algorithms compatible with openssh 6.7
- 12:42 PM Revision ecce3492 (taxeditor): Actions for creating and updating the consensus sequence in AlignmentEditor implemented.
- 12:30 PM Revision eb522fd8 (cdm-vaadin): setting mavn prerequisites
- 12:02 PM Revision f4f0f913 (cdmlib): fix parsing of names with teams in name and reference #2223
- 11:11 AM Revision d8c84690 (taxeditor): AbstractAlignmentEditorHandler added.
- 10:43 AM Revision ae7e2680 (taxeditor): ICdmDataChangeService, CdmUIDataChangeService, CdmDataChangeService : added new data change service with different services for the ui and non-ui states
- CdmApplicationState, CdmStore : added data change service to app state
CdmChangeEvent, ICdmChangeListener : added cha... - 10:43 AM Revision 5904a60f (taxeditor): RemotingCdmUpdateOperation : corrected exception handling
- RemotingChangeAcceptedTaxonToSynonymOperation : new remoting operation class
server.properties : server properties fo... - 10:42 AM Revision 323a4942 (taxeditor): rebase from remoting-4.0 branch
- 10:41 AM Revision 6c610cc5 (taxeditor): plugin.xml : updated plugin for new remoting handlers
- RemotingCdmHandler, RemotingCdmOperation, RemotingCdmUpdateOperation : new handler / operation architecture
RemotingC... - 09:49 AM Revision ae586e95 (cdm-vaadin): bumping jgit-flow plugin to 1.0-m5.1
- 09:00 AM Revision 5d8a1bb8 (taxeditor): made compatible with cdmlib superclass
06/18/2015
- 03:59 PM Revision a42b3f42 (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- Conflicts:
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServic... - 03:52 PM feature request #4074 (In Progress): [MASTER] Setup testing framework for remoting
- 03:33 PM Revision acc28c93 (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- 03:28 PM Revision b275ef1e (taxeditor): all delete methods need an Uuid as argument
- 03:24 PM Revision a153e34f (taxeditor): corrected pom merge
- 03:22 PM Revision 16016d51 (taxeditor): Merge remote-tracking branch 'origin/develop' into develop
- 03:17 PM Revision dde2b107 (taxeditor): Merge branch 'develop' of wp5.e-taxonomy.eu:/var/git/taxeditor into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/.gitignore
eu.etaxonomy.taxedito... - 03:15 PM Revision 36ce3c34 (taxeditor): change delete argument to UUID
- 03:04 PM Revision 64528d1a (taxeditor): minor
- 02:59 PM Revision 817fbd3d (cdmlib): minor
- 02:50 PM Revision e064cc19 (cdmlib): forgot to check in the changes
- 02:46 PM Revision 0a32c706 (cdmlib): - add @Audited to all type properties
- - add taxonNodeComparator for rank and alphabetical orderedVocabularyDao
- change delete() methods arguments to UUIDs - 02:29 PM Revision e1c012ef (taxeditor): setting root logger setting to WARN
- 02:08 PM Revision c6ee1b2a (taxeditor): removed programmatic log level setting
- 02:05 PM bug #4884: Update Reference_AUD.refType to allow NULL
- update script does not exist yet!
- 11:56 AM bug #4884: Update Reference_AUD.refType to allow NULL
- in the update script the Reference_AUD.reftype allows NULL, but that creates a new column reftype. We need to allow N...
- 01:55 PM Revision a622e4c0 (taxeditor): corrected remote source to use initialzed cdm server
- 01:18 PM Revision 8b391072 (cdmlib): Merge branch 'RankSpecificRootNodes-1'
- 01:11 PM Revision c570e284 (cdmlib): Fixing test for listRankSpecificRootNodes
- 12:58 PM Revision f0909be0 (taxeditor): setting root loffer level to warn
- 11:58 AM Revision 844234ce (cdmlib): add @Audited to the argument type
- 11:48 AM Revision b03505f7 (cdmlib): fix listRankSpecificRootNodes behavior for ranks in between and some
- additional tests
- 11:28 AM Revision 0fd7ff08 (taxeditor): CdmRemoteSourceBase : using user service for db checks
- httpInvokerServiceClients.xml : updated database service config
HttpInvokerServicesTest : added polytomous key servic... - 11:22 AM Revision bbd51e1c (cdmlib): Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib
- 11:14 AM Revision a743d2da (cdmlib): IUserService, UserService : added db check methods
- remoting-services : moved database service to be included in security filter
- 10:31 AM Revision 9b9184c5 (cdmlib): Merge branch 'RankSpecificRootNodes-1'
- 09:45 AM Revision 04f2494e (taxeditor): CdmApplicationState:New class to handle application state
- CdmStore, BaseRemotingTest : using new application state class
TaxonNavigatorTest : ignoring test for now
TaxonNaviga...
06/17/2015
- 07:31 PM Revision 5ae3fb8d (cdmlib): Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib
- 06:38 PM Revision d2decaca (cdmlib): some additional test for #2778
- 06:29 PM Revision c92c5c63 (cdmlib): add some tests for rankSpecificRootNodes, related to #2778
- 06:27 PM Revision 4ad1d8de (taxeditor): ignoring bin folder
- 05:04 PM Revision b9fda8f7 (cdmlib): Merge branch 'RankSpecificRootNodes-1' of https://dev.e-taxonomy.eu/git/cdmlib into RankSpecificRootNodes-1
- 04:55 PM Revision f989e265 (cdmlib): avoiding LEFT OUTER JOIN by splitting query in two
- 04:29 PM Revision 58d848ab (cdmlib): adding support for https in UriUtils
- 04:23 PM Revision 4794624d (cdmlib): adding support for https in UriUtils
- 03:52 PM Revision 61ec9fa7 (taxeditor): merge-update from trunk
- 03:34 PM Revision d39efa8a (cdmlib): avoiding LEFT OUTER JOIN by splitting query in two
- 03:31 PM Revision c31e35b4 (taxeditor): ToggleInsertOverwriteHandler now also triggers enabling and disabling of ToggleLeftRightInsertionHandler when the insert key is used instead of the tool bar button.
- Actions for cutting pherograms on the left and right ends added.
Action for reverse complementing single reads added.... - 03:07 PM Revision cc6163c2 (cdmlib): cleanup dataset
- 02:42 PM Revision b464e37e (cdmlib): fix testdata for #2778
- 02:34 PM Revision 3a36d17c (cdmlib): fixing missing LanguageString in test dataset for #2778. However, test
- still fails.
- 01:07 PM Revision 5262dcd6 (cdmlib): test commit
- 12:30 PM Revision 957c3a5f (cdmlib): fix #4976 Titlecache for new vocabularies not filled correctly
06/16/2015
- 06:05 PM Revision dbaef697 (cdmlib): only a test
- 06:05 PM Revision 4a226647 (cdmlib): only a test
- 06:00 PM Revision 57e02195 (cdm-server): only a test
- 06:00 PM Revision 2e0a922e (cdm-server): only a test
- 04:20 PM Revision 53ec4369 (cdmlib): fix #4976 Titlecache for new vocabularies not filled correctly
- 04:16 PM Revision 97ecfa0d (cdmlib): minor cleanup
- 04:14 PM Revision 92b1e8d1 (cdmlib): minor cleanup
- 02:04 PM Revision d24b444b (taxeditor): Merge branch 'develop' of ssh://dev.e-taxonomy.eu/var/git/taxeditor into develop
- 01:53 PM Revision d84f59dd (taxeditor): fixing for compatibility with merged cdmlib
- 10:24 AM Revision 35bff1e0 (taxeditor): removing properties file from repo
- 10:18 AM Revision e70b1617 (taxeditor): eu.etaxonomy.taxeditor.cdmlib/.classpath,MANIFEST.MF : removed cdm-server jar from classpath
- OperationTestBase, TaxonNameEditorTest, : refactoring
MockConversationEnabled : class to mock interface IConversatio...
06/15/2015
- 04:21 PM Revision 63c9393a (taxeditor): removed reference to cdm-server
- 04:11 PM Revision 79e8baa5 (taxeditor): - added transient service methods
- 03:47 PM Revision 122836c3 (taxeditor): add empty folder
- 03:44 PM Revision 6210ec4b (cdmlib): merging test file from remote master
- 03:08 PM Revision 19333d7c (taxeditor): - fixed order of team members #4936
- 02:57 PM Revision 645129f4 (cdmlib): DescriptionServiceImpl : added dao delete of description
- OccurrenceServiceDeepDeleteTest : removed extra delete call
TaxonServiceImplTest : added testing of taxon.removeDescr... - 02:57 PM Revision 95d79544 (cdmlib): correcting wrong merge
- 02:57 PM Revision c2235141 (cdmlib): pushing delete to end of method to fix problem with merge
- 02:47 PM Revision 0849a0f4 (cdmlib): Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib
- 02:31 PM Revision 2d308c81 (taxeditor): - fixed NPE (#4937)
- 02:09 PM Revision 3191afdc (cdmlib): implementing modifications requested in #2880
- 02:03 PM Revision 91029fdf (cdm-dataportal): removing unused web service url constant
- 01:36 PM Revision 9df1cbb4 (cdmlib): - correctly cleaned up between test invocations
- 01:33 PM Revision fe2289e3 (cdmlib): - added missing table column to test DB
- 12:46 PM Revision d4770c1f (taxeditor): - removed inBetween target for Derivative Editor (fixes #4966)
- 12:23 PM Revision 6dca0c72 (cdmlib): implementing test to reproduce issue #2778 - the test runs succesfully, so the issue is already solved
- 12:20 PM Revision b390d5fb (cdmlib): providing a example implementation of createTestDataSet()
- 10:52 AM Revision 169640eb (taxeditor): Icons added for insert/overwrite button in AlignmentEditor tool bar.
- Insert left/right in pherogram disabled when switching to overwrite mode.
- 09:56 AM Revision 70f4317c (taxeditor): - removed test folder
- 09:49 AM Revision 697258f0 (taxeditor): Merge branch 'develop' of https://dev.e-taxonomy.eu/git/taxeditor into develop
- 09:46 AM Revision 66710185 (taxeditor): - removed test folder from classpatch
- 09:05 AM Revision e5154356 (cdmlib): - added test for "ignoreAuthorship" option
- 09:05 AM Revision beba0b4b (cdmlib): - text formatting
- 09:04 AM Revision 45b5cb33 (cdmlib): - re-enabled dna quality parsing
06/14/2015
06/12/2015
- 06:36 PM Revision ca47ea76 (cdm-dataportal): Option to switch on/off Taxon profile picture placeholder - #3470
- 05:39 PM Revision 5975c6e4 (cdmlib): pushing delete to end of method to fix problem with merge
- 05:37 PM Revision 6f838c04 (taxeditor): fix umlaute in key menus and add gitignore for rcp.target
- 03:01 PM Revision 5c781bd3 (taxeditor): BaseRemotingTest, RemotingSessionAwareTest : made abstract since there are not runnable tests
- CdmEntitySessionManagerTest (.xml) : fixed test data
- 02:29 PM Revision df390232 (taxeditor): RemotingSessionAwareTest : added new class which handles pre-config of test classes which require a session
- *Test.java : set super class to RemotingSessionAwareTest
*.xml : removed DefinedTermBase entites from datasets so tha... - 12:50 PM Revision 73ec4722 (cdmlib): Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib into remoting-4.0
- Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java - 12:48 PM Revision 52c1b80c (cdmlib): reverting back last change
- 12:26 PM Revision 6f79ba7b (cdmlib): CdmCacher : corrected initializing of default cache
- defaultApplicationContext : replaced component scan of cache with specific bean initialization
- 10:36 AM Revision 76bbeb60 (cdm-dataportal): fixing uuid for Achilla - #4983
06/11/2015
- 05:50 PM Revision 115e458f (taxeditor): fixed issues with resource loading for maven int tests
- 03:39 PM Revision 55a1a227 (taxeditor): Further adjustments to recent changes in LibrAlign.
- 03:38 PM Revision 3f140bb9 (cdm-dataportal): implemented selenium test for PolytomousKeys #4983
- 02:33 PM Revision f5a93446 (cdmlib): fixing bug in last commit regarding #4974 (AdvancedBeanInitializer causes error with eu.etaxonomy.cdm.model.description.KeyStatement)
- 01:17 PM Revision eea4ad97 (cdmlib-apps): minor
- 01:16 PM Revision 256d7534 (cdmlib): fixing #4974 (AdvancedBeanInitializer causes error with eu.etaxonomy.cdm.model.description.KeyStatement)
- 11:31 AM Revision e147bff0 (cdmlib): adapt csv export for caryophyllales
- 10:50 AM Revision 608f7100 (taxeditor): corrected merge to latest snapshot version
- updated hibernate config file and test db
setup testing framework with jetty and maven
06/10/2015
- 05:04 PM Revision b75202ab (cdm-server): Updating develop poms back to pre merge state
- 05:04 PM Revision b3842d63 (cdm-server): Merge branch 'master' into develop
- 05:04 PM Revision c94e798b (cdm-server): updating develop poms to master versions to avoid merge conflicts
- 05:04 PM Revision 3b0e0aee (cdm-server): Merge branch 'release/3.6.1'
- 05:03 PM Revision cb75150e (cdm-server): no deploy since this is only a test
- 02:55 PM Revision 0a974916 (cdm-server): pinning cdm-webapp version to 3.6.0 for testing only
- 02:00 PM Revision d6a1dad2 (cdm-server): updating poms for branch'release/3.6.1' with non-snapshot versions
- 01:59 PM feature request #4766: Repair Methods for the cdm instance
- we may also integrate this as a validation rule -> #4981
- 01:57 PM Revision aa2c0090 (cdm-server): cleaning up the pom.xml
- 01:57 PM Revision c7a06725 (cdm-server): updating poms for 3.6.2-SNAPSHOT development
- 01:47 PM Revision 096415c0 (cdm-server): replacing maven-release plugin with jgitflow-maven-plugin
06/09/2015
- 04:46 PM Revision 6837a06b (cdmlib): minor
- 04:13 PM Revision e42918a8 (cdmlib): - added test to ignore because data base conflicts for later tests
- 04:06 PM Revision 1f0572cb (cdmlib-apps): updated BgmbInstancesUpdater
- 03:59 PM Revision a72ff755 (cdmlib): - added test to ignore because data base conflicts for later tests
- 02:37 PM task #4978 (New): Further performance improvement of portal/taxon/{uuid}/media
- successor to #4179 (improve performance of portal/taxon/{uuid}/media)
I tested on test (ca. 0.5s and product... - 02:34 PM feature request #2711: Proper handling of cdm webservice HTTP status codes
- see also [#4977#note-4]
in case of errors in the search web service the result says "No matching entries found". It ... - 02:23 PM Revision fe646ea5 (cdmlib): - cleanup DB after test run
- 02:04 PM Revision 29dfb224 (cdmlib-apps): in preparation for ticket #4950
- 01:55 PM Revision 58696fe1 (cdmlib-apps): latest FM activator changes
- 01:54 PM Revision 0a4c0a67 (cdmlib-apps): latest FotG activator changes
- 01:20 PM Revision d2ca4afe (cdm-dataportal): fixing #4977: advanced search with distribution filter is broken
- 12:57 PM bug #4965 (In Progress): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
- This solution probably works only with [[MySQL]] but we should support at least all supported database types.
I jus... - 12:22 PM bug #4965 (Resolved): unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
- r24150 : implementing getDatabase() in WrappedCdmDataSource for `ComboPooledDataSource`
this allows us to use the ... - 12:52 PM Revision 56e63c4b (cdmlib): minor
- 12:51 PM Revision 8e4c4d7c (cdmlib): add override
- 12:19 PM Revision 7fa91bbc (cdmlib): disabling sql tracing in logs
- 12:18 PM Revision 0357b240 (cdmlib): fixing #4965 unsupported method getDatabase() in WrappedCdmDataSource breaks forceSchemaUpdate
- 09:43 AM bug #3098 (In Progress): CdmPermissionEvaluator can test for multiple permissions
- 09:42 AM bug #3098: CdmPermissionEvaluator can test for multiple permissions
- SecurityTest.testHasPermissions() still is failing when it is not ignored.
- 09:40 AM Revision db49def5 (cdmlib): - added more ggbn ABCD parameters to import and test
- 09:32 AM Revision c5485129 (taxeditor): fixed classpath issues and issues from last merge
- 09:22 AM Revision 902d7875 (taxeditor): changed output dir to classes
06/08/2015
- 04:50 PM Revision 76543dac (taxeditor): Adjustments to recent changes in LibrAlign.
- 03:04 PM feature request #4257 (In Progress): specimen map should zoom to area of distribution
- 01:57 PM Revision 45ab0adb (taxeditor): merge-update from trunk
- 01:52 PM Revision e479cceb (cdm-server): Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdm-server into ticket-4963
- 01:46 PM Revision 91a93eb2 (taxeditor): merge-update from trunk
- 01:18 PM Revision e7c0aec6 (cdmlib): corrected duplicate methods and unimplemented method issue
- 01:08 PM Revision 1f478638 (cdmlib): Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib into remoting-4.0
- Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java
cdmlib-model/src/main/java/eu/... - 01:00 PM Revision efedd195 (taxeditor): fixed manifest versions
- 12:22 PM Revision 439d94c3 (taxeditor): new .gitignore file
- 12:20 PM Revision 7b2caa7b (taxeditor): removed test source from classpath
- 12:13 PM Revision 9ee1c500 (taxeditor): fixed update to snapshot
- 12:06 PM bug #4583 (In Progress): zoological names with book as nomref shown with undesirable comma
- 10:28 AM Revision f407988d (cdmlib): - added more parameters to GGBN parser and test
- 10:26 AM Revision 36ea2506 (taxeditor): corrected cdmlib version to snapshot
Also available in: Atom